Query 018745
Match_columns 351
No_of_seqs 313 out of 1826
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 1.4E-42 4.7E-47 330.9 16.1 228 114-341 1-228 (293)
2 4b4t_J 26S protease regulatory 100.0 2.4E-39 8.1E-44 321.0 16.7 208 113-335 145-360 (405)
3 4b4t_I 26S protease regulatory 100.0 1.2E-38 4.2E-43 317.3 15.8 208 113-335 179-394 (437)
4 4b4t_M 26S protease regulatory 100.0 2.2E-38 7.6E-43 317.3 15.9 209 113-335 178-393 (434)
5 4b4t_L 26S protease subunit RP 100.0 4.3E-38 1.5E-42 315.5 16.7 207 113-335 178-393 (437)
6 4b4t_H 26S protease regulatory 100.0 5.9E-38 2E-42 315.0 16.5 209 113-335 206-421 (467)
7 4b4t_K 26S protease regulatory 100.0 3.9E-37 1.3E-41 308.0 15.1 207 113-335 169-385 (428)
8 3cf2_A TER ATPase, transitiona 100.0 3.1E-34 1.1E-38 305.6 6.7 177 143-335 505-689 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.4E-32 4.7E-37 293.0 16.7 207 112-335 200-413 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 9.3E-28 3.2E-32 231.4 20.1 205 113-335 9-221 (322)
11 2x8a_A Nuclear valosin-contain 100.0 5.6E-28 1.9E-32 228.3 14.5 205 114-335 8-224 (274)
12 3cf0_A Transitional endoplasmi 99.9 2.6E-28 8.8E-33 232.6 10.3 207 112-334 11-226 (301)
13 3eie_A Vacuolar protein sortin 99.9 1.9E-27 6.5E-32 228.5 15.7 206 111-334 13-225 (322)
14 2ce7_A Cell division protein F 99.9 1.7E-27 5.7E-32 241.4 15.6 207 111-334 11-226 (476)
15 2qp9_X Vacuolar protein sortin 99.9 6.9E-27 2.4E-31 228.2 15.6 205 113-335 48-259 (355)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.6E-27 1.6E-31 216.6 13.3 175 144-334 34-219 (262)
17 1lv7_A FTSH; alpha/beta domain 99.9 3.4E-26 1.2E-30 211.8 18.7 209 110-334 6-222 (257)
18 3h4m_A Proteasome-activating n 99.9 1E-26 3.5E-31 217.7 15.3 210 111-334 12-228 (285)
19 2zan_A Vacuolar protein sortin 99.9 3.8E-26 1.3E-30 229.4 14.8 207 111-335 129-343 (444)
20 3hu3_A Transitional endoplasmi 99.9 1.4E-25 4.7E-30 228.2 14.9 176 144-336 233-414 (489)
21 2dhr_A FTSH; AAA+ protein, hex 99.9 7.7E-26 2.6E-30 230.4 12.9 207 111-334 26-241 (499)
22 1ixz_A ATP-dependent metallopr 99.9 5.7E-25 1.9E-29 203.3 13.3 207 111-334 11-226 (254)
23 3b9p_A CG5977-PA, isoform A; A 99.9 1.2E-24 4E-29 205.1 15.5 180 147-342 52-244 (297)
24 3d8b_A Fidgetin-like protein 1 99.9 1.2E-24 4E-29 212.3 15.1 181 146-343 114-307 (357)
25 2r62_A Cell division protease 99.9 1.2E-26 4.1E-31 215.7 0.6 207 111-334 6-223 (268)
26 3vfd_A Spastin; ATPase, microt 99.9 2E-24 7E-29 212.5 16.0 216 111-343 110-338 (389)
27 1iy2_A ATP-dependent metallopr 99.9 7.6E-24 2.6E-28 198.8 13.8 207 111-334 35-250 (278)
28 1ypw_A Transitional endoplasmi 99.9 6.3E-26 2.2E-30 243.0 -0.9 176 145-335 507-689 (806)
29 1ypw_A Transitional endoplasmi 99.9 1.2E-21 4E-26 210.0 18.6 208 110-334 198-412 (806)
30 2c9o_A RUVB-like 1; hexameric 99.8 1.2E-22 4.2E-27 204.2 -5.0 173 145-334 59-257 (456)
31 1d2n_A N-ethylmaleimide-sensit 99.8 1.2E-18 4.1E-23 162.5 12.7 170 140-330 55-228 (272)
32 3syl_A Protein CBBX; photosynt 99.8 1.1E-17 3.7E-22 157.8 16.0 154 146-325 64-233 (309)
33 1g41_A Heat shock protein HSLU 99.7 3.7E-17 1.3E-21 164.0 9.2 134 148-307 49-188 (444)
34 3m6a_A ATP-dependent protease 99.7 1.9E-16 6.5E-21 162.7 14.1 166 148-330 107-297 (543)
35 1ofh_A ATP-dependent HSL prote 99.7 1.6E-16 5.6E-21 149.0 11.4 156 147-308 48-212 (310)
36 1jbk_A CLPB protein; beta barr 99.6 2.2E-16 7.4E-21 136.1 8.4 135 147-307 41-194 (195)
37 3pfi_A Holliday junction ATP-d 99.6 4.2E-15 1.4E-19 142.1 17.1 158 147-331 53-219 (338)
38 3hws_A ATP-dependent CLP prote 99.6 2.4E-16 8.1E-21 153.2 8.0 159 148-309 50-267 (363)
39 1l8q_A Chromosomal replication 99.6 1.7E-15 5.9E-20 144.5 9.2 181 112-328 7-198 (324)
40 3uk6_A RUVB-like 2; hexameric 99.6 3.1E-14 1.1E-18 137.3 17.9 152 146-325 67-288 (368)
41 2p65_A Hypothetical protein PF 99.6 6E-15 2E-19 127.2 9.1 124 147-297 41-183 (187)
42 1hqc_A RUVB; extended AAA-ATPa 99.6 2.1E-14 7.3E-19 135.9 13.5 157 147-329 36-201 (324)
43 3pvs_A Replication-associated 99.5 5.7E-14 1.9E-18 141.2 15.1 142 150-328 51-204 (447)
44 3u61_B DNA polymerase accessor 99.5 6.4E-14 2.2E-18 133.2 14.1 152 111-308 21-175 (324)
45 2z4s_A Chromosomal replication 99.5 9.1E-15 3.1E-19 146.5 7.8 183 111-330 100-297 (440)
46 1um8_A ATP-dependent CLP prote 99.5 5E-14 1.7E-18 137.3 12.7 105 147-251 70-177 (376)
47 1r6b_X CLPA protein; AAA+, N-t 99.5 1.9E-13 6.4E-18 145.0 17.9 158 148-331 206-391 (758)
48 3pxg_A Negative regulator of g 99.5 9E-14 3.1E-18 140.2 14.1 141 149-331 201-367 (468)
49 1sxj_A Activator 1 95 kDa subu 99.5 2E-14 6.9E-19 146.5 9.2 152 148-328 76-241 (516)
50 1qvr_A CLPB protein; coiled co 99.5 6.2E-14 2.1E-18 150.9 13.3 156 148-330 190-373 (854)
51 2chg_A Replication factor C sm 99.5 3.3E-13 1.1E-17 118.7 15.3 145 151-330 40-195 (226)
52 4fcw_A Chaperone protein CLPB; 99.5 1.9E-13 6.4E-18 128.6 13.7 156 150-328 48-258 (311)
53 3pxi_A Negative regulator of g 99.5 2.3E-13 8E-18 144.5 13.8 125 147-313 199-340 (758)
54 3pxi_A Negative regulator of g 99.4 1.6E-12 5.4E-17 138.1 17.4 154 148-326 519-701 (758)
55 2qby_B CDC6 homolog 3, cell di 99.4 4.6E-13 1.6E-17 129.3 11.1 151 147-330 43-236 (384)
56 1njg_A DNA polymerase III subu 99.4 2.2E-12 7.7E-17 114.4 14.0 150 147-325 43-214 (250)
57 3bos_A Putative DNA replicatio 99.4 3.3E-13 1.1E-17 121.1 8.6 147 148-330 51-208 (242)
58 2chq_A Replication factor C sm 99.4 1.2E-12 4.2E-17 122.7 12.5 144 152-330 41-195 (319)
59 2v1u_A Cell division control p 99.4 8.7E-13 3E-17 126.7 11.7 141 147-312 42-215 (387)
60 3te6_A Regulatory protein SIR3 99.4 1.7E-12 6E-17 125.0 13.1 139 147-312 43-212 (318)
61 1r6b_X CLPA protein; AAA+, N-t 99.4 1.3E-12 4.4E-17 138.5 12.7 156 150-326 489-692 (758)
62 1sxj_D Activator 1 41 kDa subu 99.4 2.9E-12 1E-16 122.2 12.4 141 151-326 60-222 (353)
63 1g8p_A Magnesium-chelatase 38 99.4 5.2E-13 1.8E-17 127.5 6.6 144 150-309 46-230 (350)
64 1sxj_B Activator 1 37 kDa subu 99.3 4.4E-12 1.5E-16 119.2 11.9 144 147-326 41-196 (323)
65 1iqp_A RFCS; clamp loader, ext 99.3 1.1E-11 3.7E-16 116.7 11.7 141 151-326 48-199 (327)
66 3n70_A Transport activator; si 99.3 8.1E-12 2.8E-16 105.9 8.1 91 148-278 23-116 (145)
67 1jr3_A DNA polymerase III subu 99.3 4.9E-11 1.7E-15 114.5 14.6 145 147-326 36-208 (373)
68 3ec2_A DNA replication protein 99.3 3.3E-12 1.1E-16 111.4 5.4 102 110-224 4-112 (180)
69 1in4_A RUVB, holliday junction 99.3 4.4E-11 1.5E-15 115.1 13.7 157 147-330 49-214 (334)
70 2bjv_A PSP operon transcriptio 99.3 2.3E-12 8E-17 119.1 4.4 160 149-331 29-225 (265)
71 1sxj_E Activator 1 40 kDa subu 99.3 5.3E-11 1.8E-15 113.9 14.0 145 147-325 35-223 (354)
72 2r44_A Uncharacterized protein 99.3 1.5E-11 5E-16 117.4 10.0 142 150-313 47-200 (331)
73 1qvr_A CLPB protein; coiled co 99.2 3.2E-11 1.1E-15 129.8 13.5 157 150-326 589-796 (854)
74 2qby_A CDC6 homolog 1, cell di 99.2 6.4E-11 2.2E-15 113.3 13.8 141 147-312 43-211 (386)
75 1fnn_A CDC6P, cell division co 99.2 6.5E-11 2.2E-15 114.0 13.4 148 151-325 46-224 (389)
76 1a5t_A Delta prime, HOLB; zinc 99.2 1.4E-10 4.9E-15 111.5 15.6 146 145-325 20-191 (334)
77 1sxj_C Activator 1 40 kDa subu 99.2 6.6E-11 2.2E-15 113.6 12.9 150 147-333 45-205 (340)
78 3co5_A Putative two-component 99.2 6.9E-12 2.4E-16 106.2 2.2 90 149-278 27-116 (143)
79 3f9v_A Minichromosome maintena 99.1 3.2E-12 1.1E-16 132.7 -0.9 139 151-312 329-491 (595)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 2.2E-11 7.5E-16 124.0 5.0 139 150-311 42-196 (500)
81 4akg_A Glutathione S-transfera 99.1 5.5E-11 1.9E-15 139.9 7.5 142 149-312 1267-1432(2695)
82 1ojl_A Transcriptional regulat 99.1 8E-11 2.7E-15 112.1 7.1 133 147-304 23-179 (304)
83 2w58_A DNAI, primosome compone 99.0 4.1E-10 1.4E-14 99.5 8.4 106 109-225 18-128 (202)
84 2gno_A DNA polymerase III, gam 99.0 1.8E-09 6.3E-14 103.1 13.2 129 149-311 18-152 (305)
85 3cmw_A Protein RECA, recombina 99.0 8.7E-10 3E-14 125.2 11.0 75 150-228 1083-1176(1706)
86 2qgz_A Helicase loader, putati 99.0 2.1E-10 7.1E-15 109.6 4.7 104 111-225 119-227 (308)
87 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.2E-09 4E-14 105.4 6.9 122 145-285 119-242 (331)
88 2kjq_A DNAA-related protein; s 98.8 5.8E-09 2E-13 89.2 8.0 58 148-224 35-95 (149)
89 1w5s_A Origin recognition comp 98.8 1.5E-08 5.2E-13 98.2 10.2 142 148-311 49-228 (412)
90 1tue_A Replication protein E1; 98.8 1.9E-08 6.5E-13 91.1 8.6 40 135-176 46-85 (212)
91 1svm_A Large T antigen; AAA+ f 98.7 2.7E-08 9.1E-13 97.9 9.1 122 145-302 165-287 (377)
92 2r2a_A Uncharacterized protein 98.7 4.4E-08 1.5E-12 88.0 8.0 126 148-297 4-150 (199)
93 3k1j_A LON protease, ATP-depen 98.6 5.3E-08 1.8E-12 100.9 7.2 26 150-175 61-86 (604)
94 3thg_A Ribulose bisphosphate c 98.6 2.9E-08 1E-12 79.6 3.3 44 298-341 5-48 (107)
95 3cmu_A Protein RECA, recombina 98.5 2.8E-07 9.5E-12 106.2 11.1 79 145-227 1423-1520(2050)
96 2qen_A Walker-type ATPase; unk 98.5 9.1E-07 3.1E-11 83.3 12.0 157 150-330 32-240 (350)
97 2fna_A Conserved hypothetical 98.5 3.9E-06 1.3E-10 79.0 15.7 35 150-184 31-65 (357)
98 1u0j_A DNA replication protein 98.3 2.2E-06 7.4E-11 80.4 10.7 41 134-175 90-130 (267)
99 4akg_A Glutathione S-transfera 98.3 2.9E-06 9.8E-11 100.5 12.5 138 149-307 645-789 (2695)
100 2cvh_A DNA repair and recombin 98.2 8.5E-06 2.9E-10 71.9 11.1 40 145-184 16-55 (220)
101 1ye8_A Protein THEP1, hypothet 98.1 3E-05 1E-09 67.9 11.3 27 151-177 2-28 (178)
102 1ny5_A Transcriptional regulat 98.0 3.8E-06 1.3E-10 82.4 5.9 158 150-331 161-355 (387)
103 3vkg_A Dynein heavy chain, cyt 98.0 5.9E-06 2E-10 98.7 7.7 140 150-310 1305-1468(3245)
104 1n0w_A DNA repair protein RAD5 98.0 2.4E-05 8.3E-10 70.0 9.2 83 144-226 19-133 (243)
105 3hr8_A Protein RECA; alpha and 97.9 2.8E-05 9.6E-10 75.7 9.5 82 145-226 57-153 (356)
106 3cmu_A Protein RECA, recombina 97.9 2.8E-05 9.7E-10 89.8 10.8 82 145-226 728-824 (2050)
107 3dzd_A Transcriptional regulat 97.9 1.3E-05 4.3E-10 78.2 6.9 158 150-331 153-346 (368)
108 1qhx_A CPT, protein (chloramph 97.9 1.5E-05 5.3E-10 68.2 6.3 34 149-182 3-36 (178)
109 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.4E-05 2.5E-09 66.0 10.9 37 145-181 19-58 (235)
110 3vkg_A Dynein heavy chain, cyt 97.8 0.00012 4.1E-09 87.7 13.5 139 150-307 605-749 (3245)
111 1xp8_A RECA protein, recombina 97.8 0.00016 5.5E-09 70.5 11.6 82 145-226 70-166 (366)
112 2rhm_A Putative kinase; P-loop 97.7 2.4E-05 8.3E-10 67.6 5.1 34 146-179 2-35 (193)
113 1g5t_A COB(I)alamin adenosyltr 97.7 6E-05 2E-09 67.5 7.7 73 150-222 29-130 (196)
114 2p5t_B PEZT; postsegregational 97.7 0.00012 4.2E-09 67.0 10.1 55 131-185 13-68 (253)
115 1gvn_B Zeta; postsegregational 97.7 5.1E-05 1.7E-09 71.4 7.5 62 125-186 8-70 (287)
116 3trf_A Shikimate kinase, SK; a 97.7 2.1E-05 7.2E-10 67.9 4.3 33 149-181 5-37 (185)
117 3f8t_A Predicted ATPase involv 97.7 6.4E-06 2.2E-10 83.1 1.1 124 151-302 241-385 (506)
118 2z43_A DNA repair and recombin 97.7 4.4E-05 1.5E-09 72.8 6.5 83 144-226 102-217 (324)
119 1jr3_D DNA polymerase III, del 97.7 0.00031 1.1E-08 66.8 12.1 148 147-330 16-176 (343)
120 2ehv_A Hypothetical protein PH 97.7 0.00015 5.1E-09 65.0 9.0 26 145-170 26-51 (251)
121 3cmw_A Protein RECA, recombina 97.7 8.4E-05 2.9E-09 84.9 8.9 82 145-226 728-824 (1706)
122 1pzn_A RAD51, DNA repair and r 97.6 0.00012 4E-09 70.9 8.7 82 144-225 126-244 (349)
123 1v5w_A DMC1, meiotic recombina 97.6 7E-05 2.4E-09 72.1 7.1 83 144-226 117-233 (343)
124 2zr9_A Protein RECA, recombina 97.6 3.7E-05 1.3E-09 74.5 5.0 82 145-226 57-153 (349)
125 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00012 4.1E-09 67.5 8.1 39 148-186 3-44 (260)
126 4a74_A DNA repair and recombin 97.6 8.6E-05 2.9E-09 65.7 6.8 29 145-173 21-49 (231)
127 2dr3_A UPF0273 protein PH0284; 97.6 0.00028 9.7E-09 63.0 10.3 38 145-182 19-59 (247)
128 3iij_A Coilin-interacting nucl 97.6 4E-05 1.4E-09 66.0 4.4 35 146-180 8-42 (180)
129 3vaa_A Shikimate kinase, SK; s 97.6 4E-05 1.4E-09 67.4 4.4 36 146-181 22-57 (199)
130 3umf_A Adenylate kinase; rossm 97.6 4.9E-05 1.7E-09 69.0 4.9 35 144-178 24-58 (217)
131 3lda_A DNA repair protein RAD5 97.6 0.00013 4.5E-09 72.0 8.3 82 145-226 174-287 (400)
132 1kag_A SKI, shikimate kinase I 97.5 5.1E-05 1.7E-09 64.6 4.0 31 149-179 4-34 (173)
133 2cdn_A Adenylate kinase; phosp 97.5 6.7E-05 2.3E-09 65.8 4.8 35 146-180 17-51 (201)
134 3io5_A Recombination and repai 97.5 0.00011 3.7E-09 70.7 6.4 82 145-227 25-126 (333)
135 1tev_A UMP-CMP kinase; ploop, 97.5 5.5E-05 1.9E-09 65.1 4.0 31 149-179 3-33 (196)
136 2iyv_A Shikimate kinase, SK; t 97.5 5E-05 1.7E-09 65.5 3.7 31 151-181 4-34 (184)
137 3kb2_A SPBC2 prophage-derived 97.5 7.6E-05 2.6E-09 63.0 4.6 31 151-181 3-33 (173)
138 2zts_A Putative uncharacterize 97.5 0.00039 1.3E-08 62.1 9.4 38 145-182 26-67 (251)
139 2a5y_B CED-4; apoptosis; HET: 97.5 0.0016 5.4E-08 66.3 14.9 25 147-171 150-174 (549)
140 1z6t_A APAF-1, apoptotic prote 97.5 0.00086 2.9E-08 68.2 12.9 24 148-171 146-169 (591)
141 2c95_A Adenylate kinase 1; tra 97.5 7E-05 2.4E-09 64.8 4.1 33 148-180 8-40 (196)
142 1qf9_A UMP/CMP kinase, protein 97.5 8.9E-05 3E-09 63.7 4.5 33 148-180 5-37 (194)
143 1zuh_A Shikimate kinase; alpha 97.5 8E-05 2.7E-09 63.3 4.1 31 150-180 8-38 (168)
144 1ly1_A Polynucleotide kinase; 97.4 5.8E-05 2E-09 64.2 3.2 30 149-178 2-32 (181)
145 1y63_A LMAJ004144AAA protein; 97.4 7.4E-05 2.5E-09 64.9 3.9 32 149-180 10-42 (184)
146 1u94_A RECA protein, recombina 97.4 0.00015 5.2E-09 70.4 6.5 82 145-226 59-155 (356)
147 3cm0_A Adenylate kinase; ATP-b 97.4 7.9E-05 2.7E-09 64.1 3.9 31 149-179 4-34 (186)
148 1aky_A Adenylate kinase; ATP:A 97.4 9E-05 3.1E-09 66.0 4.3 33 148-180 3-35 (220)
149 2r6a_A DNAB helicase, replicat 97.4 0.00065 2.2E-08 67.7 11.0 38 145-182 199-240 (454)
150 1via_A Shikimate kinase; struc 97.4 9.4E-05 3.2E-09 63.4 4.1 30 151-180 6-35 (175)
151 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.6E-09 64.6 4.5 32 149-180 18-49 (202)
152 3lw7_A Adenylate kinase relate 97.4 8.9E-05 3E-09 62.2 3.7 29 151-180 3-31 (179)
153 2bwj_A Adenylate kinase 5; pho 97.4 9E-05 3.1E-09 64.3 3.8 33 148-180 11-43 (199)
154 1zp6_A Hypothetical protein AT 97.4 8.3E-05 2.9E-09 64.3 3.5 40 145-184 5-44 (191)
155 2vli_A Antibiotic resistance p 97.4 7.8E-05 2.7E-09 63.9 3.2 30 149-178 5-34 (183)
156 1ukz_A Uridylate kinase; trans 97.4 0.00011 3.8E-09 64.3 4.1 34 147-180 13-46 (203)
157 1zd8_A GTP:AMP phosphotransfer 97.4 9.1E-05 3.1E-09 66.4 3.7 34 147-180 5-38 (227)
158 2i1q_A DNA repair and recombin 97.4 0.00019 6.5E-09 67.9 5.8 29 145-173 94-122 (322)
159 1kht_A Adenylate kinase; phosp 97.3 9.9E-05 3.4E-09 63.4 3.3 26 149-174 3-28 (192)
160 3tlx_A Adenylate kinase 2; str 97.3 0.00013 4.5E-09 66.5 4.3 34 147-180 27-60 (243)
161 3sfz_A APAF-1, apoptotic pepti 97.3 0.0018 6.1E-08 70.7 13.9 26 147-172 145-170 (1249)
162 1e6c_A Shikimate kinase; phosp 97.3 0.00012 4.1E-09 62.1 3.6 30 151-180 4-33 (173)
163 2orw_A Thymidine kinase; TMTK, 97.3 0.00014 4.8E-09 63.9 4.1 31 150-180 4-37 (184)
164 2ze6_A Isopentenyl transferase 97.3 0.00017 6E-09 66.3 4.7 32 151-182 3-34 (253)
165 2bbw_A Adenylate kinase 4, AK4 97.3 0.0002 6.7E-09 65.1 4.9 32 148-179 26-57 (246)
166 2q6t_A DNAB replication FORK h 97.3 0.0016 5.4E-08 64.7 11.7 39 144-182 195-237 (444)
167 1ak2_A Adenylate kinase isoenz 97.3 0.00018 6.2E-09 64.9 4.5 33 148-180 15-47 (233)
168 3dl0_A Adenylate kinase; phosp 97.3 0.00015 5E-09 64.2 3.7 30 151-180 2-31 (216)
169 3fb4_A Adenylate kinase; psych 97.3 0.00016 5.4E-09 63.9 3.9 30 151-180 2-31 (216)
170 2pt5_A Shikimate kinase, SK; a 97.3 0.00017 5.9E-09 60.9 3.9 30 151-180 2-31 (168)
171 4eun_A Thermoresistant glucoki 97.2 0.00023 8E-09 62.5 4.7 32 147-178 27-58 (200)
172 1cke_A CK, MSSA, protein (cyti 97.2 0.00024 8.2E-09 63.1 4.8 31 149-179 5-35 (227)
173 2b8t_A Thymidine kinase; deoxy 97.2 0.00034 1.2E-08 63.7 5.7 73 150-223 13-100 (223)
174 1knq_A Gluconate kinase; ALFA/ 97.2 0.00027 9.3E-09 60.3 4.7 31 149-179 8-38 (175)
175 3sr0_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 64.1 4.0 29 151-179 2-30 (206)
176 3be4_A Adenylate kinase; malar 97.2 0.00019 6.3E-09 64.1 3.6 31 150-180 6-36 (217)
177 1zak_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 64.2 3.4 32 148-179 4-35 (222)
178 2pez_A Bifunctional 3'-phospho 97.2 0.00034 1.2E-08 60.1 5.1 38 147-184 3-43 (179)
179 2v54_A DTMP kinase, thymidylat 97.2 0.00024 8E-09 61.9 4.0 34 148-181 3-37 (204)
180 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00021 7.1E-09 69.6 4.0 30 150-179 25-54 (359)
181 3jvv_A Twitching mobility prot 97.2 0.0011 3.9E-08 64.2 9.1 68 150-221 124-205 (356)
182 3crm_A TRNA delta(2)-isopenten 97.2 0.0015 5E-08 62.8 9.6 35 148-182 4-38 (323)
183 2pbr_A DTMP kinase, thymidylat 97.1 0.0004 1.4E-08 59.6 4.8 31 151-181 2-35 (195)
184 3uie_A Adenylyl-sulfate kinase 97.1 0.0012 3.9E-08 58.0 7.6 39 147-185 23-64 (200)
185 1e4v_A Adenylate kinase; trans 97.1 0.00031 1E-08 62.3 3.9 30 151-180 2-31 (214)
186 1vma_A Cell division protein F 97.1 0.0027 9.2E-08 60.3 10.6 36 147-182 102-140 (306)
187 3bh0_A DNAB-like replicative h 97.1 0.0042 1.4E-07 58.8 11.9 38 144-181 63-103 (315)
188 2wwf_A Thymidilate kinase, put 97.1 0.0002 6.9E-09 62.7 2.5 30 147-176 8-37 (212)
189 3r20_A Cytidylate kinase; stru 97.0 0.00042 1.5E-08 63.5 4.5 32 148-179 8-39 (233)
190 2z0h_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 59.6 4.5 31 151-181 2-35 (197)
191 3ake_A Cytidylate kinase; CMP 97.0 0.00057 2E-08 59.5 4.9 30 151-180 4-33 (208)
192 2jaq_A Deoxyguanosine kinase; 97.0 0.00041 1.4E-08 60.1 3.9 28 151-178 2-29 (205)
193 1uf9_A TT1252 protein; P-loop, 97.0 0.00039 1.3E-08 60.3 3.8 31 148-179 7-37 (203)
194 1nn5_A Similar to deoxythymidy 97.0 0.00025 8.7E-09 62.1 2.5 29 147-175 7-35 (215)
195 2plr_A DTMP kinase, probable t 97.0 0.00047 1.6E-08 60.1 4.3 28 149-176 4-31 (213)
196 3dm5_A SRP54, signal recogniti 97.0 0.0019 6.6E-08 64.5 9.2 70 148-221 99-191 (443)
197 1nks_A Adenylate kinase; therm 97.0 0.00029 1E-08 60.4 2.7 24 151-174 3-26 (194)
198 1jjv_A Dephospho-COA kinase; P 97.0 0.00043 1.5E-08 60.7 3.8 29 150-179 3-31 (206)
199 2xb4_A Adenylate kinase; ATP-b 97.0 0.00048 1.6E-08 61.8 4.1 30 151-180 2-31 (223)
200 2if2_A Dephospho-COA kinase; a 97.0 0.00041 1.4E-08 60.7 3.5 30 151-181 3-32 (204)
201 1vht_A Dephospho-COA kinase; s 97.0 0.0006 2.1E-08 60.4 4.6 32 148-180 3-34 (218)
202 2qt1_A Nicotinamide riboside k 96.9 0.00042 1.4E-08 60.9 3.3 35 145-179 17-52 (207)
203 2fz4_A DNA repair protein RAD2 96.9 0.0024 8.2E-08 57.9 8.5 33 151-183 110-142 (237)
204 1m7g_A Adenylylsulfate kinase; 96.9 0.002 7E-08 56.8 7.6 39 147-185 23-65 (211)
205 1rz3_A Hypothetical protein rb 96.9 0.0014 4.7E-08 57.7 6.4 36 146-181 19-57 (201)
206 1uj2_A Uridine-cytidine kinase 96.9 0.00067 2.3E-08 61.9 4.4 31 147-177 20-50 (252)
207 3bgw_A DNAB-like replicative h 96.9 0.0046 1.6E-07 61.6 10.6 38 145-182 193-233 (444)
208 1q57_A DNA primase/helicase; d 96.9 0.0036 1.2E-07 63.0 9.8 38 145-182 238-279 (503)
209 3a8t_A Adenylate isopentenyltr 96.8 0.0023 7.7E-08 61.8 7.7 35 148-182 39-73 (339)
210 2eyu_A Twitching motility prot 96.8 0.0012 4.2E-08 61.1 5.5 28 146-173 22-49 (261)
211 2grj_A Dephospho-COA kinase; T 96.8 0.00078 2.7E-08 59.6 3.9 31 150-180 13-43 (192)
212 4e22_A Cytidylate kinase; P-lo 96.8 0.00091 3.1E-08 61.2 4.4 30 149-178 27-56 (252)
213 2r8r_A Sensor protein; KDPD, P 96.8 0.0013 4.5E-08 60.1 5.4 33 150-182 7-42 (228)
214 2h92_A Cytidylate kinase; ross 96.8 0.0009 3.1E-08 59.1 4.1 32 149-180 3-34 (219)
215 1q3t_A Cytidylate kinase; nucl 96.8 0.0012 4E-08 59.6 4.8 33 147-179 14-46 (236)
216 1g41_A Heat shock protein HSLU 96.7 0.0033 1.1E-07 62.8 8.5 90 212-307 250-345 (444)
217 1ltq_A Polynucleotide kinase; 96.7 0.00084 2.9E-08 62.4 3.8 30 149-178 2-32 (301)
218 3kl4_A SRP54, signal recogniti 96.7 0.0029 9.8E-08 63.1 7.8 36 148-183 96-134 (433)
219 2f6r_A COA synthase, bifunctio 96.7 0.00092 3.2E-08 62.4 3.9 32 148-180 74-105 (281)
220 3zvl_A Bifunctional polynucleo 96.7 0.001 3.5E-08 65.7 4.4 32 147-178 256-287 (416)
221 3c8u_A Fructokinase; YP_612366 96.7 0.0017 5.7E-08 57.4 5.4 29 146-174 19-47 (208)
222 3nwj_A ATSK2; P loop, shikimat 96.7 0.00097 3.3E-08 61.6 3.9 32 150-181 49-80 (250)
223 2qor_A Guanylate kinase; phosp 96.7 0.00097 3.3E-08 58.6 3.7 29 146-174 9-37 (204)
224 2j41_A Guanylate kinase; GMP, 96.7 0.0011 3.7E-08 57.6 4.0 27 147-173 4-30 (207)
225 3foz_A TRNA delta(2)-isopenten 96.7 0.0015 5E-08 62.5 5.0 36 147-182 8-43 (316)
226 3asz_A Uridine kinase; cytidin 96.7 0.001 3.5E-08 58.4 3.6 33 147-179 4-38 (211)
227 2axn_A 6-phosphofructo-2-kinas 96.6 0.0021 7.3E-08 65.4 6.1 30 147-176 33-62 (520)
228 2yvu_A Probable adenylyl-sulfa 96.6 0.0015 5E-08 56.4 4.3 36 147-182 11-49 (186)
229 1vt4_I APAF-1 related killer D 96.6 0.018 6.1E-07 63.4 13.1 24 149-172 150-173 (1221)
230 3tr0_A Guanylate kinase, GMP k 96.6 0.0016 5.3E-08 56.6 4.1 27 147-173 5-31 (205)
231 3tqc_A Pantothenate kinase; bi 96.5 0.0032 1.1E-07 60.2 6.5 38 137-174 80-117 (321)
232 2ewv_A Twitching motility prot 96.5 0.0022 7.4E-08 62.5 5.4 28 146-173 133-160 (372)
233 2iut_A DNA translocase FTSK; n 96.5 0.028 9.6E-07 57.8 13.6 33 151-183 216-255 (574)
234 2bdt_A BH3686; alpha-beta prot 96.5 0.002 6.8E-08 55.6 4.2 26 150-175 3-28 (189)
235 4a1f_A DNAB helicase, replicat 96.5 0.0068 2.3E-07 58.4 8.3 38 145-182 42-82 (338)
236 3d3q_A TRNA delta(2)-isopenten 96.5 0.0019 6.4E-08 62.5 4.2 33 149-181 7-39 (340)
237 3tau_A Guanylate kinase, GMP k 96.4 0.0016 5.4E-08 57.7 3.5 28 147-174 6-33 (208)
238 1kgd_A CASK, peripheral plasma 96.4 0.0021 7.1E-08 55.5 4.0 26 149-174 5-30 (180)
239 1sq5_A Pantothenate kinase; P- 96.4 0.0033 1.1E-07 59.3 5.5 38 137-174 68-105 (308)
240 3a00_A Guanylate kinase, GMP k 96.4 0.0018 6.3E-08 56.1 3.3 26 149-174 1-26 (186)
241 3fdi_A Uncharacterized protein 96.3 0.0027 9.2E-08 56.4 4.3 30 150-179 7-36 (201)
242 3gmt_A Adenylate kinase; ssgci 96.3 0.0025 8.4E-08 58.3 4.1 30 151-180 10-39 (230)
243 2jeo_A Uridine-cytidine kinase 96.3 0.0027 9.3E-08 57.5 4.3 32 145-176 21-52 (245)
244 1odf_A YGR205W, hypothetical 3 96.3 0.0059 2E-07 57.4 6.6 30 145-174 27-56 (290)
245 3exa_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 60.5 4.1 33 149-181 3-35 (322)
246 3e70_C DPA, signal recognition 96.2 0.027 9.3E-07 53.8 10.8 27 147-173 127-153 (328)
247 2j37_W Signal recognition part 96.2 0.012 4.3E-07 59.6 8.7 36 147-182 99-137 (504)
248 1lvg_A Guanylate kinase, GMP k 96.1 0.0028 9.6E-08 55.7 3.3 27 148-174 3-29 (198)
249 3kw6_A 26S protease regulatory 96.1 0.0023 7.8E-08 48.1 2.3 39 297-335 2-44 (78)
250 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0048 1.6E-07 59.0 5.1 69 150-222 172-250 (330)
251 1x6v_B Bifunctional 3'-phospho 96.1 0.0081 2.8E-07 62.5 7.1 38 148-185 51-91 (630)
252 4eaq_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 55.8 4.6 34 146-179 23-58 (229)
253 2krk_A 26S protease regulatory 96.0 0.002 7E-08 49.7 1.7 40 297-336 10-53 (86)
254 3eph_A TRNA isopentenyltransfe 96.0 0.005 1.7E-07 60.8 4.8 32 149-180 2-33 (409)
255 1zu4_A FTSY; GTPase, signal re 96.0 0.027 9.3E-07 53.6 9.8 37 146-182 102-141 (320)
256 1znw_A Guanylate kinase, GMP k 96.0 0.0044 1.5E-07 54.6 3.9 30 145-174 16-45 (207)
257 2yhs_A FTSY, cell division pro 95.9 0.065 2.2E-06 54.2 12.6 29 145-173 289-317 (503)
258 3hdt_A Putative kinase; struct 95.9 0.0051 1.7E-07 55.7 4.1 31 149-179 14-44 (223)
259 1gtv_A TMK, thymidylate kinase 95.9 0.0027 9.1E-08 55.5 2.1 24 151-174 2-25 (214)
260 1z6g_A Guanylate kinase; struc 95.9 0.0044 1.5E-07 55.4 3.5 28 146-173 20-47 (218)
261 3thx_B DNA mismatch repair pro 95.9 0.033 1.1E-06 60.4 10.9 24 148-171 672-695 (918)
262 3thx_A DNA mismatch repair pro 95.9 0.045 1.5E-06 59.5 11.9 22 150-171 663-684 (934)
263 1a7j_A Phosphoribulokinase; tr 95.9 0.0029 9.8E-08 59.5 2.3 38 148-185 4-44 (290)
264 2xxa_A Signal recognition part 95.9 0.028 9.5E-07 55.9 9.5 38 147-184 98-139 (433)
265 4gp7_A Metallophosphoesterase; 95.9 0.0033 1.1E-07 53.9 2.4 22 147-168 7-28 (171)
266 1w4r_A Thymidine kinase; type 95.9 0.0046 1.6E-07 55.1 3.4 35 149-183 20-57 (195)
267 1ex7_A Guanylate kinase; subst 95.9 0.0071 2.4E-07 53.3 4.6 24 151-174 3-26 (186)
268 1tf7_A KAIC; homohexamer, hexa 95.8 0.053 1.8E-06 54.8 11.6 25 145-169 35-59 (525)
269 1htw_A HI0065; nucleotide-bind 95.8 0.007 2.4E-07 51.8 4.3 29 145-173 29-57 (158)
270 3aez_A Pantothenate kinase; tr 95.8 0.0063 2.2E-07 57.8 4.4 29 146-174 87-115 (312)
271 1nlf_A Regulatory protein REPA 95.8 0.0045 1.6E-07 57.1 3.2 29 145-173 26-54 (279)
272 1j8m_F SRP54, signal recogniti 95.8 0.025 8.6E-07 53.2 8.3 35 149-183 98-135 (297)
273 1ls1_A Signal recognition part 95.7 0.03 1E-06 52.5 8.7 34 148-181 97-133 (295)
274 1ewq_A DNA mismatch repair pro 95.7 0.051 1.7E-06 57.8 11.3 23 150-172 577-599 (765)
275 3ice_A Transcription terminati 95.7 0.028 9.4E-07 55.5 8.5 25 149-173 174-198 (422)
276 1cr0_A DNA primase/helicase; R 95.7 0.0065 2.2E-07 56.3 4.0 30 144-173 30-59 (296)
277 2qmh_A HPR kinase/phosphorylas 95.7 0.0045 1.6E-07 55.6 2.7 31 149-180 34-64 (205)
278 1sky_E F1-ATPase, F1-ATP synth 95.7 0.016 5.5E-07 58.3 6.9 23 151-173 153-175 (473)
279 1g8f_A Sulfate adenylyltransfe 95.7 0.0081 2.8E-07 61.1 4.7 53 122-175 369-421 (511)
280 3ney_A 55 kDa erythrocyte memb 95.7 0.0071 2.4E-07 53.9 3.8 26 149-174 19-44 (197)
281 4b3f_X DNA-binding protein smu 95.6 0.0083 2.8E-07 62.3 4.8 33 151-183 207-242 (646)
282 4f4c_A Multidrug resistance pr 95.6 0.042 1.5E-06 61.7 10.8 29 146-174 441-469 (1321)
283 2gks_A Bifunctional SAT/APS ki 95.6 0.024 8.1E-07 58.0 8.1 61 124-185 348-411 (546)
284 3b9q_A Chloroplast SRP recepto 95.6 0.017 6E-07 54.5 6.6 28 146-173 97-124 (302)
285 2ocp_A DGK, deoxyguanosine kin 95.6 0.0079 2.7E-07 54.1 4.0 26 149-174 2-27 (241)
286 1s96_A Guanylate kinase, GMP k 95.6 0.0078 2.7E-07 54.2 3.9 29 146-174 13-41 (219)
287 1bif_A 6-phosphofructo-2-kinas 95.5 0.015 5.2E-07 57.9 6.2 30 147-176 37-66 (469)
288 3lnc_A Guanylate kinase, GMP k 95.5 0.0041 1.4E-07 55.6 1.7 28 146-173 24-52 (231)
289 3upu_A ATP-dependent DNA helic 95.5 0.014 4.9E-07 57.9 5.8 23 151-173 47-69 (459)
290 2v9p_A Replication protein E1; 95.5 0.0099 3.4E-07 56.5 4.4 29 145-173 122-150 (305)
291 2v3c_C SRP54, signal recogniti 95.5 0.01 3.6E-07 58.9 4.7 36 148-183 98-136 (432)
292 2j9r_A Thymidine kinase; TK1, 95.5 0.029 9.8E-07 50.7 7.1 33 150-182 29-64 (214)
293 2ius_A DNA translocase FTSK; n 95.5 0.16 5.5E-06 51.5 13.4 33 151-183 169-208 (512)
294 1wb9_A DNA mismatch repair pro 95.4 0.069 2.4E-06 57.1 11.0 23 150-172 608-630 (800)
295 3v9p_A DTMP kinase, thymidylat 95.4 0.023 8E-07 51.5 6.2 34 148-181 24-64 (227)
296 2og2_A Putative signal recogni 95.3 0.025 8.7E-07 54.8 6.7 28 146-173 154-181 (359)
297 1c9k_A COBU, adenosylcobinamid 95.3 0.014 4.9E-07 51.2 4.4 32 152-184 2-33 (180)
298 2i3b_A HCR-ntpase, human cance 95.3 0.01 3.5E-07 52.2 3.5 23 151-173 3-25 (189)
299 3p32_A Probable GTPase RV1496/ 95.3 0.06 2.1E-06 51.6 9.3 34 147-180 77-113 (355)
300 1m8p_A Sulfate adenylyltransfe 95.3 0.019 6.6E-07 59.0 6.0 39 146-184 393-435 (573)
301 1p5z_B DCK, deoxycytidine kina 95.2 0.0044 1.5E-07 56.6 1.0 28 147-174 22-49 (263)
302 2oap_1 GSPE-2, type II secreti 95.2 0.0086 2.9E-07 60.8 3.1 26 149-174 260-285 (511)
303 4edh_A DTMP kinase, thymidylat 95.2 0.021 7.3E-07 51.1 5.4 33 149-181 6-41 (213)
304 3kta_A Chromosome segregation 95.2 0.013 4.4E-07 50.0 3.7 26 150-175 27-52 (182)
305 1np6_A Molybdopterin-guanine d 95.2 0.014 4.9E-07 50.7 4.0 26 148-173 5-30 (174)
306 1rj9_A FTSY, signal recognitio 95.2 0.015 5.3E-07 54.9 4.5 26 148-173 101-126 (304)
307 1p9r_A General secretion pathw 95.1 0.039 1.3E-06 54.5 7.5 25 150-174 168-192 (418)
308 4i1u_A Dephospho-COA kinase; s 95.1 0.014 4.6E-07 52.6 3.7 31 150-181 10-40 (210)
309 3e1s_A Exodeoxyribonuclease V, 95.1 0.019 6.5E-07 59.0 5.2 34 149-182 204-240 (574)
310 3tmk_A Thymidylate kinase; pho 95.0 0.025 8.6E-07 50.9 5.2 33 148-180 4-36 (216)
311 1xjc_A MOBB protein homolog; s 95.0 0.017 5.8E-07 50.2 3.9 33 149-181 4-39 (169)
312 2ffh_A Protein (FFH); SRP54, s 94.8 0.098 3.4E-06 51.8 9.5 35 148-182 97-134 (425)
313 2onk_A Molybdate/tungstate ABC 94.8 0.015 5E-07 53.1 3.2 27 146-173 22-48 (240)
314 2px0_A Flagellar biosynthesis 94.8 0.019 6.7E-07 53.9 4.0 37 147-183 103-143 (296)
315 2cbz_A Multidrug resistance-as 94.7 0.014 4.9E-07 52.9 2.9 28 146-173 28-55 (237)
316 3tif_A Uncharacterized ABC tra 94.7 0.015 5E-07 52.8 2.9 27 147-173 29-55 (235)
317 2pcj_A ABC transporter, lipopr 94.6 0.013 4.3E-07 52.8 2.1 27 147-173 28-54 (224)
318 1b0u_A Histidine permease; ABC 94.5 0.017 5.8E-07 53.3 2.8 27 147-173 30-56 (262)
319 3tqf_A HPR(Ser) kinase; transf 94.5 0.028 9.5E-07 49.4 4.0 28 150-178 17-44 (181)
320 3lv8_A DTMP kinase, thymidylat 94.4 0.026 8.9E-07 51.5 3.9 25 149-173 27-51 (236)
321 2f1r_A Molybdopterin-guanine d 94.4 0.018 6.1E-07 49.9 2.6 25 150-174 3-27 (171)
322 1mv5_A LMRA, multidrug resista 94.4 0.019 6.4E-07 52.3 2.8 28 146-173 25-52 (243)
323 2zu0_C Probable ATP-dependent 94.4 0.022 7.6E-07 52.7 3.3 27 146-172 43-69 (267)
324 3b85_A Phosphate starvation-in 94.4 0.017 5.8E-07 51.5 2.4 24 149-172 22-45 (208)
325 2o8b_B DNA mismatch repair pro 94.3 0.25 8.6E-06 54.1 12.0 22 149-170 789-810 (1022)
326 2olj_A Amino acid ABC transpor 94.3 0.02 7E-07 52.9 2.8 28 146-173 47-74 (263)
327 2ghi_A Transport protein; mult 94.3 0.021 7.1E-07 52.6 2.9 28 146-173 43-70 (260)
328 3fvq_A Fe(3+) IONS import ATP- 94.2 0.023 7.8E-07 55.2 3.2 27 147-173 28-54 (359)
329 3vkw_A Replicase large subunit 94.2 0.099 3.4E-06 52.1 7.9 25 147-171 159-183 (446)
330 2d2e_A SUFC protein; ABC-ATPas 94.2 0.022 7.4E-07 52.1 2.9 26 147-172 27-52 (250)
331 1g6h_A High-affinity branched- 94.2 0.018 6.2E-07 52.9 2.3 27 147-173 31-57 (257)
332 2gk6_A Regulator of nonsense t 94.2 0.024 8.1E-07 58.7 3.5 23 151-173 197-219 (624)
333 2ixe_A Antigen peptide transpo 94.2 0.021 7.4E-07 52.9 2.9 28 146-173 42-69 (271)
334 3ch4_B Pmkase, phosphomevalona 94.2 0.025 8.5E-07 50.6 3.1 29 147-175 9-37 (202)
335 1ji0_A ABC transporter; ATP bi 94.2 0.019 6.5E-07 52.2 2.3 26 148-173 31-56 (240)
336 3ld9_A DTMP kinase, thymidylat 94.2 0.036 1.2E-06 50.1 4.2 33 147-179 19-55 (223)
337 2ff7_A Alpha-hemolysin translo 94.1 0.019 6.7E-07 52.4 2.3 27 147-173 33-59 (247)
338 1lw7_A Transcriptional regulat 94.1 0.027 9.4E-07 54.0 3.5 28 149-176 170-197 (365)
339 2pze_A Cystic fibrosis transme 94.1 0.02 6.7E-07 51.7 2.3 27 147-173 32-58 (229)
340 3cr8_A Sulfate adenylyltranfer 94.1 0.023 7.7E-07 58.3 3.0 29 146-174 366-394 (552)
341 3d31_A Sulfate/molybdate ABC t 94.1 0.024 8.1E-07 54.8 3.0 27 147-173 24-50 (348)
342 2it1_A 362AA long hypothetical 94.1 0.027 9.2E-07 54.7 3.3 27 147-173 27-53 (362)
343 2yz2_A Putative ABC transporte 94.1 0.024 8.1E-07 52.4 2.9 27 147-173 31-57 (266)
344 2yyz_A Sugar ABC transporter, 94.1 0.027 9.4E-07 54.6 3.4 27 147-173 27-53 (359)
345 1vpl_A ABC transporter, ATP-bi 94.1 0.024 8.2E-07 52.2 2.8 28 146-173 38-65 (256)
346 1sgw_A Putative ABC transporte 94.0 0.018 6.2E-07 51.7 1.9 25 149-173 35-59 (214)
347 3rlf_A Maltose/maltodextrin im 94.0 0.028 9.6E-07 55.0 3.3 27 147-173 27-53 (381)
348 3gfo_A Cobalt import ATP-bindi 94.0 0.021 7.1E-07 53.3 2.3 27 147-173 32-58 (275)
349 1v43_A Sugar-binding transport 94.0 0.029 9.8E-07 54.7 3.3 27 147-173 35-61 (372)
350 2f9l_A RAB11B, member RAS onco 94.0 0.031 1.1E-06 48.1 3.3 23 150-172 6-28 (199)
351 4g1u_C Hemin import ATP-bindin 94.0 0.022 7.4E-07 52.8 2.3 27 147-173 35-61 (266)
352 1oix_A RAS-related protein RAB 93.9 0.031 1.1E-06 48.1 3.1 24 150-173 30-53 (191)
353 3e2i_A Thymidine kinase; Zn-bi 93.9 0.025 8.5E-07 51.3 2.5 34 149-182 28-64 (219)
354 2p67_A LAO/AO transport system 93.9 0.18 6.1E-06 48.0 8.7 28 146-173 53-80 (341)
355 1z47_A CYSA, putative ABC-tran 93.8 0.027 9.3E-07 54.6 2.9 27 147-173 39-65 (355)
356 2qi9_C Vitamin B12 import ATP- 93.8 0.024 8E-07 52.1 2.3 27 147-173 24-50 (249)
357 1oxx_K GLCV, glucose, ABC tran 93.8 0.024 8.2E-07 54.8 2.4 27 147-173 29-55 (353)
358 2nq2_C Hypothetical ABC transp 93.8 0.024 8.2E-07 52.1 2.3 27 147-173 29-55 (253)
359 3vlf_B 26S protease regulatory 93.8 0.014 4.9E-07 44.9 0.6 37 299-335 2-42 (88)
360 2ihy_A ABC transporter, ATP-bi 93.8 0.024 8.3E-07 52.9 2.3 27 147-173 45-71 (279)
361 2vp4_A Deoxynucleoside kinase; 93.8 0.025 8.6E-07 50.6 2.3 27 146-172 17-43 (230)
362 1g29_1 MALK, maltose transport 93.8 0.029 9.8E-07 54.7 2.9 26 148-173 28-53 (372)
363 4tmk_A Protein (thymidylate ki 93.7 0.045 1.5E-06 49.0 3.8 25 149-173 3-27 (213)
364 3sop_A Neuronal-specific septi 93.7 0.039 1.3E-06 51.1 3.5 23 151-173 4-26 (270)
365 1nrj_B SR-beta, signal recogni 93.7 0.048 1.6E-06 47.4 4.0 25 149-173 12-36 (218)
366 2dyk_A GTP-binding protein; GT 93.6 0.041 1.4E-06 44.9 3.2 22 151-172 3-24 (161)
367 1w36_D RECD, exodeoxyribonucle 93.6 0.04 1.4E-06 56.9 3.7 24 150-173 165-188 (608)
368 1yrb_A ATP(GTP)binding protein 93.6 0.083 2.8E-06 47.4 5.4 35 147-181 12-48 (262)
369 1f2t_A RAD50 ABC-ATPase; DNA d 93.5 0.045 1.5E-06 45.9 3.4 25 149-173 23-47 (149)
370 2ged_A SR-beta, signal recogni 93.5 0.056 1.9E-06 45.8 3.9 26 147-172 46-71 (193)
371 1z2a_A RAS-related protein RAB 93.4 0.047 1.6E-06 44.8 3.3 24 149-172 5-28 (168)
372 3gd7_A Fusion complex of cysti 93.4 0.039 1.3E-06 54.1 3.2 26 147-172 45-70 (390)
373 2qm8_A GTPase/ATPase; G protei 93.4 0.058 2E-06 51.5 4.3 28 146-173 52-79 (337)
374 2ce2_X GTPase HRAS; signaling 93.4 0.045 1.6E-06 44.4 3.1 22 151-172 5-26 (166)
375 1kao_A RAP2A; GTP-binding prot 93.3 0.049 1.7E-06 44.4 3.2 23 150-172 4-26 (167)
376 2bbs_A Cystic fibrosis transme 93.3 0.036 1.2E-06 52.0 2.7 28 146-173 61-88 (290)
377 4f4c_A Multidrug resistance pr 93.3 0.23 7.7E-06 55.9 9.5 28 146-173 1102-1129(1321)
378 2pjz_A Hypothetical protein ST 93.2 0.038 1.3E-06 51.1 2.7 25 149-173 30-54 (263)
379 1tf7_A KAIC; homohexamer, hexa 93.2 0.041 1.4E-06 55.6 3.1 29 145-173 277-305 (525)
380 1upt_A ARL1, ADP-ribosylation 93.2 0.068 2.3E-06 44.0 4.0 26 147-172 5-30 (171)
381 3aji_B S6C, proteasome (prosom 93.2 0.024 8.2E-07 42.8 1.0 38 299-336 2-43 (83)
382 1ek0_A Protein (GTP-binding pr 93.2 0.053 1.8E-06 44.4 3.3 23 150-172 4-26 (170)
383 4hlc_A DTMP kinase, thymidylat 93.2 0.096 3.3E-06 46.4 5.2 32 150-181 3-36 (205)
384 1u8z_A RAS-related protein RAL 93.2 0.054 1.8E-06 44.2 3.3 23 150-172 5-27 (168)
385 3l0o_A Transcription terminati 93.2 0.25 8.5E-06 48.7 8.4 23 151-173 177-199 (427)
386 2wjy_A Regulator of nonsense t 93.1 0.046 1.6E-06 58.4 3.5 23 151-173 373-395 (800)
387 2zej_A Dardarin, leucine-rich 93.1 0.042 1.4E-06 46.7 2.5 21 151-171 4-24 (184)
388 2wji_A Ferrous iron transport 93.1 0.052 1.8E-06 45.2 3.1 22 150-171 4-25 (165)
389 3hjn_A DTMP kinase, thymidylat 93.1 0.093 3.2E-06 46.1 4.8 32 151-182 2-36 (197)
390 2gza_A Type IV secretion syste 93.0 0.044 1.5E-06 52.8 2.9 26 149-174 175-200 (361)
391 1z0j_A RAB-22, RAS-related pro 93.0 0.057 2E-06 44.3 3.2 24 150-173 7-30 (170)
392 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.058 2E-06 44.8 3.2 23 150-172 8-30 (177)
393 2nzj_A GTP-binding protein REM 93.0 0.055 1.9E-06 44.7 3.1 23 149-171 4-26 (175)
394 2wsm_A Hydrogenase expression/ 93.0 0.068 2.3E-06 46.6 3.8 26 149-174 30-55 (221)
395 1z08_A RAS-related protein RAB 93.0 0.06 2E-06 44.3 3.2 24 149-172 6-29 (170)
396 3nh6_A ATP-binding cassette SU 93.0 0.04 1.4E-06 52.2 2.4 28 146-173 77-104 (306)
397 1g16_A RAS-related protein SEC 92.9 0.057 1.9E-06 44.3 3.1 23 150-172 4-26 (170)
398 3tui_C Methionine import ATP-b 92.9 0.054 1.8E-06 52.7 3.3 27 147-173 52-78 (366)
399 1ky3_A GTP-binding protein YPT 92.9 0.061 2.1E-06 44.7 3.3 24 149-172 8-31 (182)
400 3bc1_A RAS-related protein RAB 92.9 0.063 2.1E-06 45.0 3.3 25 148-172 10-34 (195)
401 1r2q_A RAS-related protein RAB 92.9 0.063 2.2E-06 43.9 3.3 23 150-172 7-29 (170)
402 1r8s_A ADP-ribosylation factor 92.8 0.069 2.4E-06 43.7 3.4 21 152-172 3-23 (164)
403 2nr8_A Kinesin-like protein KI 92.8 0.13 4.6E-06 49.8 5.9 77 109-204 69-145 (358)
404 1c1y_A RAS-related protein RAP 92.8 0.066 2.3E-06 43.8 3.3 23 150-172 4-26 (167)
405 2lkc_A Translation initiation 92.7 0.08 2.7E-06 43.9 3.8 24 148-171 7-30 (178)
406 2erx_A GTP-binding protein DI- 92.7 0.063 2.2E-06 44.0 3.1 22 150-171 4-25 (172)
407 1dek_A Deoxynucleoside monopho 92.7 0.056 1.9E-06 49.5 2.9 27 151-177 3-29 (241)
408 3q85_A GTP-binding protein REM 92.7 0.065 2.2E-06 44.1 3.1 20 151-170 4-23 (169)
409 2obl_A ESCN; ATPase, hydrolase 92.7 0.084 2.9E-06 50.8 4.3 30 147-176 69-98 (347)
410 2wjg_A FEOB, ferrous iron tran 92.6 0.065 2.2E-06 45.1 3.1 23 150-172 8-30 (188)
411 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.061 2.1E-06 53.8 3.3 26 148-173 137-162 (460)
412 1z0f_A RAB14, member RAS oncog 92.6 0.071 2.4E-06 44.1 3.3 25 149-173 15-39 (179)
413 2y8e_A RAB-protein 6, GH09086P 92.6 0.068 2.3E-06 44.3 3.1 23 150-172 15-37 (179)
414 3clv_A RAB5 protein, putative; 92.6 0.087 3E-06 44.3 3.8 25 148-172 6-30 (208)
415 2hf9_A Probable hydrogenase ni 92.6 0.088 3E-06 46.0 4.0 25 149-173 38-62 (226)
416 2dpy_A FLII, flagellum-specifi 92.6 0.1 3.5E-06 51.8 4.8 31 146-176 154-184 (438)
417 3q72_A GTP-binding protein RAD 92.5 0.062 2.1E-06 44.1 2.7 20 151-170 4-23 (166)
418 2a9k_A RAS-related protein RAL 92.5 0.075 2.6E-06 44.3 3.3 23 150-172 19-41 (187)
419 1pui_A ENGB, probable GTP-bind 92.5 0.037 1.3E-06 47.8 1.3 26 146-171 23-48 (210)
420 2xzl_A ATP-dependent helicase 92.4 0.066 2.3E-06 57.2 3.5 21 151-171 377-397 (802)
421 2hxs_A RAB-26, RAS-related pro 92.4 0.066 2.2E-06 44.5 2.8 23 149-171 6-28 (178)
422 3con_A GTPase NRAS; structural 92.4 0.077 2.6E-06 44.8 3.3 23 150-172 22-44 (190)
423 4dsu_A GTPase KRAS, isoform 2B 92.4 0.078 2.7E-06 44.4 3.2 23 150-172 5-27 (189)
424 2fn4_A P23, RAS-related protei 92.3 0.075 2.6E-06 44.1 3.1 23 150-172 10-32 (181)
425 2efe_B Small GTP-binding prote 92.3 0.081 2.8E-06 44.0 3.2 23 150-172 13-35 (181)
426 2atv_A RERG, RAS-like estrogen 92.3 0.096 3.3E-06 44.7 3.8 25 148-172 27-51 (196)
427 1m7b_A RND3/RHOE small GTP-bin 92.3 0.076 2.6E-06 44.9 3.1 24 149-172 7-30 (184)
428 2oil_A CATX-8, RAS-related pro 92.3 0.081 2.8E-06 44.9 3.3 25 148-172 24-48 (193)
429 2bme_A RAB4A, RAS-related prot 92.3 0.077 2.6E-06 44.5 3.1 24 149-172 10-33 (186)
430 3tw8_B RAS-related protein RAB 92.3 0.074 2.5E-06 44.1 2.9 23 149-171 9-31 (181)
431 3qks_A DNA double-strand break 92.2 0.099 3.4E-06 46.0 3.8 27 149-175 23-49 (203)
432 3kkq_A RAS-related protein M-R 92.1 0.089 3E-06 44.0 3.3 24 149-172 18-41 (183)
433 3t1o_A Gliding protein MGLA; G 92.1 0.088 3E-06 44.3 3.3 24 150-173 15-38 (198)
434 1mh1_A RAC1; GTP-binding, GTPa 92.1 0.091 3.1E-06 43.8 3.3 23 150-172 6-28 (186)
435 2g6b_A RAS-related protein RAB 92.0 0.094 3.2E-06 43.6 3.3 25 148-172 9-33 (180)
436 3tkl_A RAS-related protein RAB 92.0 0.094 3.2E-06 44.3 3.3 24 149-172 16-39 (196)
437 3a1s_A Iron(II) transport prot 91.9 0.29 9.9E-06 44.6 6.7 22 150-171 6-27 (258)
438 2x77_A ADP-ribosylation factor 91.9 0.092 3.1E-06 44.4 3.1 24 147-170 20-43 (189)
439 2gf9_A RAS-related protein RAB 91.9 0.096 3.3E-06 44.3 3.3 24 149-172 22-45 (189)
440 3bwd_D RAC-like GTP-binding pr 91.9 0.12 4.1E-06 43.0 3.8 24 149-172 8-31 (182)
441 2xau_A PRE-mRNA-splicing facto 91.9 0.2 7E-06 53.1 6.4 23 150-172 110-132 (773)
442 2cxx_A Probable GTP-binding pr 91.8 0.084 2.9E-06 44.3 2.8 22 151-172 3-24 (190)
443 2c9o_A RUVB-like 1; hexameric 91.8 0.51 1.7E-05 46.6 8.9 80 213-321 296-391 (456)
444 1xx6_A Thymidine kinase; NESG, 91.8 0.17 5.7E-06 44.5 4.8 33 149-181 8-43 (191)
445 1svi_A GTP-binding protein YSX 91.8 0.11 3.7E-06 44.0 3.4 24 149-172 23-46 (195)
446 3dz8_A RAS-related protein RAB 91.7 0.1 3.5E-06 44.4 3.2 25 149-173 23-47 (191)
447 1moz_A ARL1, ADP-ribosylation 91.7 0.11 3.9E-06 43.3 3.5 24 147-170 16-39 (183)
448 3b1v_A Ferrous iron uptake tra 91.7 0.29 9.8E-06 45.2 6.5 23 150-172 4-26 (272)
449 1x3s_A RAS-related protein RAB 91.7 0.11 3.6E-06 43.9 3.3 23 150-172 16-38 (195)
450 3pqc_A Probable GTP-binding pr 91.7 0.09 3.1E-06 44.2 2.8 23 150-172 24-46 (195)
451 3c5c_A RAS-like protein 12; GD 91.6 0.11 3.6E-06 44.3 3.2 23 150-172 22-44 (187)
452 2gj8_A MNME, tRNA modification 91.6 0.11 3.7E-06 43.8 3.3 23 150-172 5-27 (172)
453 2iwr_A Centaurin gamma 1; ANK 91.6 0.089 3E-06 43.8 2.7 23 150-172 8-30 (178)
454 2bov_A RAla, RAS-related prote 91.6 0.11 3.7E-06 44.3 3.3 23 150-172 15-37 (206)
455 3t5g_A GTP-binding protein RHE 91.6 0.1 3.5E-06 43.6 3.1 23 150-172 7-29 (181)
456 3euj_A Chromosome partition pr 91.6 0.12 4.2E-06 52.0 4.1 28 146-174 27-54 (483)
457 2a5j_A RAS-related protein RAB 91.5 0.11 3.8E-06 44.1 3.3 24 149-172 21-44 (191)
458 1z06_A RAS-related protein RAB 91.5 0.11 3.8E-06 43.9 3.2 24 149-172 20-43 (189)
459 3b6e_A Interferon-induced heli 91.5 0.14 4.8E-06 44.0 3.9 24 150-173 49-72 (216)
460 1m2o_B GTP-binding protein SAR 91.5 0.12 3.9E-06 44.3 3.3 23 150-172 24-46 (190)
461 1nij_A Hypothetical protein YJ 91.5 0.31 1.1E-05 45.8 6.6 24 150-173 5-28 (318)
462 1vg8_A RAS-related protein RAB 91.4 0.11 3.8E-06 44.3 3.2 26 148-173 7-32 (207)
463 1zd9_A ADP-ribosylation factor 91.4 0.11 3.9E-06 44.0 3.3 24 149-172 22-45 (188)
464 3ihw_A Centg3; RAS, centaurin, 91.4 0.11 3.9E-06 44.1 3.2 23 150-172 21-43 (184)
465 3reg_A RHO-like small GTPase; 91.4 0.12 3.9E-06 44.0 3.3 25 148-172 22-46 (194)
466 1ko7_A HPR kinase/phosphatase; 91.4 0.12 4.1E-06 49.2 3.6 29 149-178 144-172 (314)
467 3iby_A Ferrous iron transport 91.4 0.32 1.1E-05 44.3 6.4 22 151-172 3-24 (256)
468 2www_A Methylmalonic aciduria 91.4 0.14 4.7E-06 49.1 4.1 25 149-173 74-98 (349)
469 2p5s_A RAS and EF-hand domain 91.3 0.14 4.6E-06 43.9 3.6 26 147-172 26-51 (199)
470 3cph_A RAS-related protein SEC 91.3 0.12 4E-06 44.4 3.3 25 148-172 19-43 (213)
471 3qkt_A DNA double-strand break 91.3 0.11 3.9E-06 49.3 3.4 25 149-173 23-47 (339)
472 3k53_A Ferrous iron transport 91.3 0.12 4E-06 47.2 3.4 23 150-172 4-26 (271)
473 4ag6_A VIRB4 ATPase, type IV s 91.3 0.19 6.6E-06 48.4 5.1 32 149-180 35-69 (392)
474 2fg5_A RAB-22B, RAS-related pr 91.2 0.1 3.4E-06 44.5 2.7 26 147-172 21-46 (192)
475 1ksh_A ARF-like protein 2; sma 91.2 0.13 4.6E-06 43.1 3.4 26 147-172 16-41 (186)
476 1zbd_A Rabphilin-3A; G protein 91.2 0.12 4E-06 44.3 3.1 24 149-172 8-31 (203)
477 3qf7_A RAD50; ABC-ATPase, ATPa 91.2 0.12 4.2E-06 49.7 3.5 24 150-173 24-47 (365)
478 1qhl_A Protein (cell division 91.2 0.053 1.8E-06 49.2 0.9 24 152-175 30-53 (227)
479 3oes_A GTPase rhebl1; small GT 91.2 0.12 4E-06 44.4 3.1 24 149-172 24-47 (201)
480 2qag_B Septin-6, protein NEDD5 91.1 0.11 3.6E-06 51.7 3.1 26 147-172 38-65 (427)
481 2bcg_Y Protein YP2, GTP-bindin 91.0 0.12 4.2E-06 44.3 3.1 24 149-172 8-31 (206)
482 3bfv_A CAPA1, CAPB2, membrane 91.0 0.63 2.1E-05 42.7 8.1 37 147-183 80-120 (271)
483 1gwn_A RHO-related GTP-binding 91.0 0.13 4.3E-06 44.9 3.1 24 149-172 28-51 (205)
484 1yqt_A RNAse L inhibitor; ATP- 90.9 0.14 4.8E-06 52.1 3.9 27 147-173 45-71 (538)
485 1bg2_A Kinesin; motor protein, 90.9 0.2 6.8E-06 47.9 4.6 52 111-166 44-95 (325)
486 1zj6_A ADP-ribosylation factor 90.9 0.15 5.3E-06 42.9 3.5 25 147-171 14-38 (187)
487 2yv5_A YJEQ protein; hydrolase 90.8 0.13 4.6E-06 48.1 3.3 23 150-173 166-188 (302)
488 2gf0_A GTP-binding protein DI- 90.8 0.18 6.1E-06 42.6 3.9 25 148-172 7-31 (199)
489 2orv_A Thymidine kinase; TP4A 90.8 0.43 1.5E-05 43.5 6.5 33 149-181 19-54 (234)
490 2ew1_A RAS-related protein RAB 90.8 0.13 4.6E-06 44.6 3.1 24 149-172 26-49 (201)
491 1t5c_A CENP-E protein, centrom 90.7 0.19 6.6E-06 48.4 4.4 53 110-166 43-95 (349)
492 2fh5_B SR-beta, signal recogni 90.7 0.16 5.4E-06 43.9 3.5 25 149-173 7-31 (214)
493 3lxx_A GTPase IMAP family memb 90.7 0.13 4.5E-06 45.7 3.1 24 149-172 29-52 (239)
494 1u0l_A Probable GTPase ENGC; p 90.7 0.11 3.8E-06 48.6 2.6 24 150-173 170-193 (301)
495 2atx_A Small GTP binding prote 90.7 0.14 4.8E-06 43.4 3.1 23 150-172 19-41 (194)
496 1fzq_A ADP-ribosylation factor 90.6 0.16 5.3E-06 43.0 3.3 25 148-172 15-39 (181)
497 2rcn_A Probable GTPase ENGC; Y 90.6 0.14 4.8E-06 49.6 3.3 24 150-173 216-239 (358)
498 2fu5_C RAS-related protein RAB 90.6 0.083 2.8E-06 44.2 1.5 24 149-172 8-31 (183)
499 2qnr_A Septin-2, protein NEDD5 90.6 0.11 3.8E-06 48.6 2.5 23 150-172 19-41 (301)
500 1knx_A Probable HPR(Ser) kinas 90.5 0.13 4.4E-06 48.9 3.0 29 149-178 147-175 (312)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=1.4e-42 Score=330.90 Aligned_cols=228 Identities=88% Similarity=1.393 Sum_probs=189.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCCh
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~ 193 (351)
+|+++.+++|++++|++++..+++|+|+..++.+.|+++|||||||||||++|++||++++.+++.++++++.+++.|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEE
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~ 273 (351)
+..+++.|..|.+.++...||||||||||++.+++++..+....++.+..+|++++|+...+++++.+......+++||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999877778899999999999999877655566677888999999999988878887776666788899999
Q ss_pred EeCCCCCCcchhccCCcceEEEeCCCHHHHHHHHHHhhcCCCCCHHHHHHHhcCCCCCCccccchhhc
Q 018745 274 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKFPVPLM 341 (351)
Q Consensus 274 TTN~~~~Ld~aLlR~gRfd~~i~~P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g~dldf~galr~ 341 (351)
|||+++.||++++|+|||++.+++|+.++|.+|++.++...+++.+.+++++++|+|++|+|++++|+
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~ 228 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRA 228 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999998875
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=320.95 Aligned_cols=208 Identities=17% Similarity=0.211 Sum_probs=171.4
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHh-hhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITKNF-MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~-l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
-+|+++.|-..+..++.+.+...+...- +...++++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|.|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 4567877766666677766666554332 234589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc-cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
+++++++++|..| +..+||||||||||+++++|.... ......+.+...|++.+| ++ ....+|+
T Consensus 225 ese~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD--------g~---~~~~~V~ 289 (405)
T 4b4t_J 225 EGSRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD--------GF---ETSKNIK 289 (405)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH--------TT---TCCCCEE
T ss_pred hHHHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh--------cc---CCCCCeE
Confidence 9999999999999 899999999999999998875322 111122222234444444 44 6678899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
||+|||+|+.|||||+||||||+.|++ |+.++|.+|++.+++. .+++++.+++.++||+|+||.-
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999999996 9999999999988876 3677999999999999999864
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=317.31 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=168.7
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
-+|+++.|-....+++.+.+...+.. .++...++++|+|+|||||||||||++|+|||++++.+|+.++++++.++|.|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 35677776655566666655554432 23344589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc-chhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~-~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
+++++++.+|..| +..+||||||||+|+++.+|..... ...........|++.+| + .....+|+
T Consensus 259 esek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD--------g---~~~~~~Vi 323 (437)
T 4b4t_I 259 DGPRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD--------G---FDDRGDVK 323 (437)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH--------H---CCCSSSEE
T ss_pred hHHHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh--------C---cCCCCCEE
Confidence 9999999999999 8899999999999999998853221 11111112223444344 3 35677899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
||+|||+++.|||||+||||||+.|++ |+.++|.+|++.+++. .+++++.+++.++||+|+||.-
T Consensus 324 VIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp EEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred EEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999996 9999999999998865 3677999999999999999974
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=317.32 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=169.5
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-....+++.+.+...+.. .++...|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|.|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 35678777655666666655554432 22344589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
+++++++.+|..| +..+||||||||+|+++++|.+.. ....+.+..++..+++ +++++ ....+|+|
T Consensus 258 ese~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~~~--~~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViV 323 (434)
T 4b4t_M 258 EGAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSE--KSGDREVQRTMLELLN-----QLDGF---SSDDRVKV 323 (434)
T ss_dssp HHHHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSSGG--GGTTHHHHHHHHHHHH-----HHTTS---CSSCSSEE
T ss_pred hHHHHHHHHHHHH----HhcCCeEEeecchhhhhhccCCCC--CCCchHHHHHHHHHHH-----Hhhcc---CCCCCEEE
Confidence 9999999999999 889999999999999999886321 2222223333333433 11144 56678999
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
|+|||+++.|||||+||||||+.|++ |+.++|.+|++.+++. .+++++.+++.++||+|+||.-
T Consensus 324 IaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 324 LAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp EEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred EEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999996 9999999999888754 4678999999999999999864
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-38 Score=315.49 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=168.7
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-.....++.+.+...+.. ..+...++++|+|+|||||||||||++|+|||++++++|+.++++++.++|.|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 35677777655566666655554432 22334589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc--chhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
+++++++.+|..| +..+||||||||+|+++.+|..... .....+ +...|++.+| ++ ....++
T Consensus 258 ese~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~-~l~~lL~~lD--------g~---~~~~~v 321 (437)
T 4b4t_L 258 ESARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQR-TLMELLTQMD--------GF---DNLGQT 321 (437)
T ss_dssp HHHHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHH-HHHHHHHHHH--------SS---SCTTSS
T ss_pred HHHHHHHHHHHHH----HhcCCceeeeecccccccccccCCCCcchHHHH-HHHHHHHHhh--------cc---cCCCCe
Confidence 9999999999999 8999999999999999998853221 111222 2234444444 44 556789
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+||+|||+|+.|||||+||||||+.|++ |+.++|.+|++.+++. .+++++.+++.++||+|+||.-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence 9999999999999999999999999996 9999999999988865 3677999999999999999863
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=314.99 Aligned_cols=209 Identities=17% Similarity=0.239 Sum_probs=170.1
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-..+.+++.+.+...+.. ..+...++++|+|||||||||||||+||++||++++.+|+.++++++.++|.|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 45677777656666666655554432 22334589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
+++++++.+|..| +..+||||||||+|+++.+|+.... ........++..+++ .+++.....+|+|
T Consensus 286 esek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~--------~lDg~~~~~~ViV 351 (467)
T 4b4t_H 286 EGARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELIT--------QLDGFDPRGNIKV 351 (467)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHH--------HHHSSCCTTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHH--------HhhccCCCCcEEE
Confidence 9999999999999 8999999999999999988853221 111222233333443 3333366788999
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
|+|||+++.||+||+||||||+.|++ |+.++|.+|++.+++. .+++++.+++.++||+|+||.-
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 99999999999999999999999996 9999999999988875 3677899999999999999864
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=307.95 Aligned_cols=207 Identities=17% Similarity=0.247 Sum_probs=169.1
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-..+.+++.+.+...+.. .++...|+++|+|+|||||||||||++|++||++++.+++.++++++.++|.|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 35677766555566666655554432 33344589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
++++.++++|..| +..+||||||||+|+++..|.+.. ......+.+ ..|++.+| ++ ....+|
T Consensus 249 e~e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l-~~lL~~ld--------g~---~~~~~v 312 (428)
T 4b4t_K 249 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRIL-IELLTQMD--------GF---DQSTNV 312 (428)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHH-HHHHHHHH--------HS---CSSCSE
T ss_pred hhHHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHH-HHHHHHhh--------CC---CCCCCE
Confidence 9999999999999 889999999999999998885221 122233333 34555555 44 556789
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC---CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~---P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+||+|||+++.|||||+||||||+.|++ |+.++|.+|++.+++. .+++.+.+++.++||+|+||.-
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999999999999999975 7999999999988865 3667899999999999999864
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.1e-34 Score=305.62 Aligned_cols=177 Identities=21% Similarity=0.368 Sum_probs=129.7
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..+.++|+|+|||||||||||++|+++|++++.+++.++.+++.++|.|+++++++++|..| +..+||||||||||
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiD 580 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD 580 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGG
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhh
Confidence 34788999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cccCCCCCC--ccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--C
Q 018745 223 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 298 (351)
Q Consensus 223 ~l~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P 298 (351)
++++.|+.. .......+.++ +|+..+| ++ ....+|+||+|||+|+.||+|++||||||+.+++ |
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~-~lL~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp GCC--------------CHHHH-HHHHHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHhhccCCCCCCCchHHHHHHH-HHHHHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 999988632 12223334443 5555555 44 5567899999999999999999999999999996 9
Q ss_pred CHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCccc
Q 018745 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf 335 (351)
+.++|.+|++.++++. +++++.+++.++||+|+||.-
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~ 689 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH
Confidence 9999999999988764 566889999999999999964
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.4e-32 Score=292.98 Aligned_cols=207 Identities=19% Similarity=0.282 Sum_probs=172.2
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHH-hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
..+|+++.|-.....++.+.+...+... .+...++++|+|||||||||||||+||++||++++.+++.++++++.+++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 3456777776666666666555544432 234568999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|++++.++.+|..| ++..||||||||||+++.++++ .......+ +...|+.+++ ++ ....+|+
T Consensus 280 gese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~-~~~~~~~r-iv~~LL~~md--------g~---~~~~~V~ 342 (806)
T 3cf2_A 280 GESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGEVERR-IVSQLLTLMD--------GL---KQRAHVI 342 (806)
T ss_dssp THHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTT-CCCTTHHH-HHHHHHTHHH--------HC---CGGGCEE
T ss_pred hHHHHHHHHHHHHH----HHcCCeEEEEehhcccccccCC-CCChHHHH-HHHHHHHHHh--------cc---cccCCEE
Confidence 99999999999999 8899999999999999998863 22333333 3446666666 44 4456899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
||+|||+++.||++|+|+||||+.+++ |+.++|.+|++.+++. .+++.+.++..++||+|+||.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~ 413 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999999996 9999999999998865 4778999999999999999864
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.3e-28 Score=231.43 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=158.6
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-..+...+.+.+...+....+...+..+|+++|||||||||||++|+++|+++ +.+++.++++++.+.+.|
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhh
Confidence 3567777754455555544444433333323345677999999999999999999999999 899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
+.++.++.+|..+ +..+|+||||||+|.+...+.. .......+.+ ..|+..++ +. .....++.|
T Consensus 89 ~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~-~~ll~~ld--------~~--~~~~~~v~v 152 (322)
T 1xwi_A 89 ESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSE-NESEAARRIK-TEFLVQMQ--------GV--GVDNDGILV 152 (322)
T ss_dssp SCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSS-CCTTHHHHHH-HHHHHHHH--------CS--SSCCTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCcEEEeecHHHhcccccc-ccchHHHHHH-HHHHHHHh--------cc--cccCCCEEE
Confidence 9999999999998 7889999999999999987752 2233333333 34555555 22 013567899
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC--C---HHHHHHHhcCCCCCCccc
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~--~---~~~l~~l~~gf~g~dldf 335 (351)
|+|||+++.||++++| ||+..+++ |+.++|.+|++.++..... + .+.+++.++||+|+||..
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999 89988886 9999999999998876533 3 556778889999999864
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=228.25 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=150.1
Q ss_pred ccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCC
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge 192 (351)
+|+++.+-..+.+++.+.+..+.. +..+...++..|+|++|+||||||||+|+++||.+++..++.+++.++.+.+.|+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhH
Confidence 456655543444444443333332 1223345788899999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEE
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II 272 (351)
.++.++.+|..+ ....|+++|+||+|.++..++.. ......+.+ ..++..++ +. .....++++
T Consensus 88 ~~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~-~~~l~~Ls--------gg---~~~~~~i~i 150 (274)
T 2x8a_A 88 SERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDR-ETGASVRVV-NQLLTEMD--------GL---EARQQVFIM 150 (274)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEETCTTTCC----------CTTHH-HHHHHHHH--------TC---CSTTCEEEE
T ss_pred HHHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCCC-cchHHHHHH-HHHHHhhh--------cc---cccCCEEEE
Confidence 889999999998 67889999999999987665421 111111222 23333333 32 445668899
Q ss_pred EEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-------CCCCHHHHHHH--hcCCCCCCccc
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIGK 335 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-------~~~~~~~l~~l--~~gf~g~dldf 335 (351)
++||+|+.||+|++||||||+.+++ |+.++|.+|++.+++. ..++.+.++.. ++||+|+||.-
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 9999999999999999999999996 9999999999988743 35667888876 45999999974
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=2.6e-28 Score=232.62 Aligned_cols=207 Identities=18% Similarity=0.286 Sum_probs=157.2
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
..+|+++.|...+...+.+.+...+.. ..+...+++++.++|||||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 345677776543444444333222111 1112236788999999999999999999999999999999999999988888
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
|+.++.++.+|..| ....|++|||||+|.+...+++.. ......+ +...|+..++ ++ ....+
T Consensus 91 g~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~-~~~~lL~~l~--------~~---~~~~~ 154 (301)
T 3cf0_A 91 GESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADR-VINQILTEMD--------GM---STKKN 154 (301)
T ss_dssp TTCTTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH-HHHHHHHHHH--------SS---CTTSS
T ss_pred CchHHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHH-HHHHHHHHhh--------cc---cCCCC
Confidence 88888999999998 778899999999999876543111 0111222 2334555555 33 33567
Q ss_pred ceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 269 v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
+.||+|||+++.||++++|+|||+..+++ |+.++|.+|++.+++.. +++.+.++..+.+|+|++|.
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~ 226 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT 226 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999998886 99999999999888653 56688999999999999775
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=1.9e-27 Score=228.47 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=157.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
...+|+++.+...+...+.+.+........+...+..++.++|||||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc
Confidence 34457787776555555554444443333232345677899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|+.++.++.+|..+ +..+|+||||||||.+...++. .+.....+ +...|+..++ +. .....++.
T Consensus 93 g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~-~~~~ll~~l~--------~~--~~~~~~v~ 156 (322)
T 3eie_A 93 GESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGE-GESEASRR-IKTELLVQMN--------GV--GNDSQGVL 156 (322)
T ss_dssp GGHHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHH-HHHHHHHHHG--------GG--GTSCCCEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEechhhhhhccCCC-CcchHHHH-HHHHHHHHhc--------cc--cccCCceE
Confidence 99999999999998 7889999999999999987742 22222233 3344555555 22 12356789
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC--C---HHHHHHHhcCCCCCCcc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~--~---~~~l~~l~~gf~g~dld 334 (351)
||+|||+++.||++++| ||+..+++ |+.++|.+|++.++..... + .+.+++.++||+|++|.
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999 89888885 9999999999999876542 3 45677888999999986
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.7e-27 Score=241.39 Aligned_cols=207 Identities=18% Similarity=0.233 Sum_probs=155.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
...+|+++.|......++.+. +..+. ...+...+.+.|+|+||+||||||||+||+++|++++.+++.++++++.+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 345677777653333333322 11111 0112345788999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
.|..+..++.+|..| ....||||||||+|++...++... ......+.+ ..|+..++ ++ ....
T Consensus 90 ~g~~~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l-~~LL~~ld--------~~---~~~~ 153 (476)
T 2ce7_A 90 VGVGAARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTL-NQLLVEMD--------GF---DSKE 153 (476)
T ss_dssp TTHHHHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHH-HHHHHHHH--------HS---CGGG
T ss_pred hcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHH-HHHHHHHh--------cc---CCCC
Confidence 999999999999999 778999999999999988764211 111122222 33444444 22 2345
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
++.||+|||+++.||++++|+|||++.+.+ |+.++|.+|++.+++.. +++.+.++..+.||+|++|.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~ 226 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE 226 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH
Confidence 789999999999999999999999999886 99999999998887653 55678899999999998875
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=6.9e-27 Score=228.18 Aligned_cols=205 Identities=18% Similarity=0.241 Sum_probs=151.5
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge 192 (351)
.+|+++.+-..+...+.+.+...+....+...+.+++.++|||||||||||++|+++|++++.+++.++++++.+.+.|+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch
Confidence 45667666544444554444444333333333567789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEE
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II 272 (351)
.++.++.+|..+ ....|+||||||+|.+...++. .+.....+ +...|+..++ +. .....+++||
T Consensus 128 ~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~-~~~~ll~~l~--------~~--~~~~~~v~vI 191 (355)
T 2qp9_X 128 SEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGE-GESEASRR-IKTELLVQMN--------GV--GNDSQGVLVL 191 (355)
T ss_dssp CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHH-HHHHHHHHHH--------HC--C---CCEEEE
T ss_pred HHHHHHHHHHHH----HHcCCeEEEEechHhhcccCCC-CcchHHHH-HHHHHHHHhh--------cc--cccCCCeEEE
Confidence 999999999998 7789999999999999887652 22233333 3345555555 22 0124678999
Q ss_pred EEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CC---HHHHHHHhcCCCCCCccc
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~---~~~l~~l~~gf~g~dldf 335 (351)
+|||+++.||++++| ||+..+++ |+.++|.+|++.++.... ++ .+.|++.++||+|++|.-
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999 89888886 999999999999987654 23 567888899999999864
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=4.6e-27 Score=216.65 Aligned_cols=175 Identities=23% Similarity=0.355 Sum_probs=130.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.+.+.|.++|||||||||||++|+++|++++.+++.++++.+.+.+.+.....++.+|..+ ....|++|||||+|.
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA 109 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence 3668889999999999999999999999999999999999999989898888999999988 677899999999999
Q ss_pred ccCCCCCCcc---chhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--C
Q 018745 224 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 298 (351)
Q Consensus 224 l~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P 298 (351)
+..++..... .......+ ..|++.++ +. ....++.+|+|||.++.+|++++|+|||+..+++ |
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l-~~ll~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTL-NQLLVEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------------CHHH-HHHHHHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred hhccccccccCccchhHHHHH-HHHHHHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 9876641110 11111122 22333333 22 3356789999999999999999999999999885 9
Q ss_pred CHHHHHHHHHHhhcCCCCC------HHHHHHHhcCCCCCCcc
Q 018745 299 TREDRIGVCKGIFRNDNVA------DDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~~~~------~~~l~~l~~gf~g~dld 334 (351)
+.++|.+|++.++...++. .+.++..+.||++.+|.
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence 9999999999888655443 25677778899998765
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=3.4e-26 Score=211.80 Aligned_cols=209 Identities=18% Similarity=0.223 Sum_probs=152.4
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~ 188 (351)
...++|+++.+...+.+.+.+. +..+.. ..+...+.+.|.++||+||||||||++|+++|++++.+++.++++.+.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 3445677877754333333321 111111 11123366788999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc-chhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~-~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
+.|...+.++.+|..+ ....|++|||||+|.+...+..... ...........++..++ +. ....
T Consensus 85 ~~~~~~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~--------~~---~~~~ 149 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD--------GF---EGNE 149 (257)
T ss_dssp CCCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH--------TC---CSSS
T ss_pred hhhhhHHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh--------Cc---ccCC
Confidence 9999999999999998 6778999999999999876642111 11111122234444444 32 3456
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
++.||+|||+++.+|++++|++||++.+.+ |+.++|.+|++.+++.. ..+...++..+.||++++|.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 789999999999999999999999998885 99999999998887653 44466778888889888876
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1e-26 Score=217.73 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=157.8
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..++|+++.+-......+.+.+..... ...+...+...+.++|||||||||||++|+++|++++.+++.++++++...+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 345677777753333333332222111 1112233677889999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
.|+....++.+|..+ ....|+||||||+|.+..++.+.. ..........|..+++ .+.+.....++
T Consensus 92 ~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~--------~~~~~~~~~~~ 157 (285)
T 3h4m_A 92 IGEGASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLA--------EMDGFDARGDV 157 (285)
T ss_dssp TTHHHHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHH--------HHHTTCSSSSE
T ss_pred cchHHHHHHHHHHHH----HHcCCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHH--------HhhCCCCCCCE
Confidence 999999999999988 788999999999999987765221 1111222333444443 22112345678
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
.||+|||.++.++++++|++||+..+.+ |+.++|.+|++.++... ..+.+.++..+.+|++.+|.
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999998886 99999999999888653 45688999999999998876
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=3.8e-26 Score=229.41 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=146.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~s~l~s~~ 189 (351)
...+|+++.|-..+...+.+.+...+....+...+..+|+++|||||||||||++|+++|+++ +.+++.++++++.+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 344567776653333333333322222111111234677999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
.|+.++.++.+|..+ ....|+||||||||.+.+.+... ......+ +...|+..++ +.. ....++
T Consensus 209 ~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~-~~~~lL~~l~--------~~~--~~~~~v 272 (444)
T 2zan_A 209 LGESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARR-IKTEFLVQMQ--------GVG--VDNDGI 272 (444)
T ss_dssp ---CCCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCC-CCGGGHH-HHHHHHTTTT--------CSS--CCCSSC
T ss_pred cchHHHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCc-cccHHHH-HHHHHHHHHh--------Ccc--cCCCCE
Confidence 999989999999988 77899999999999998877522 2233333 3344555444 320 135679
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC-----CHHHHHHHhcCCCCCCccc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~-----~~~~l~~l~~gf~g~dldf 335 (351)
+||+|||+++.||++++| ||+..+++ |+.++|.+|++.++...+. +.+.++..++||+|+||..
T Consensus 273 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp EEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999 89888885 9999999999999866432 3567888899999999864
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.4e-25 Score=228.17 Aligned_cols=176 Identities=21% Similarity=0.312 Sum_probs=150.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.+.+.|.++|||||||||||++|+++|++++.+++.++++.+.+.+.|+....++.+|..| ....|++|||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 3678899999999999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
+..++.. .. ......+...|+.+++ +. ....++.||+|||+++.||++++|+|||+..+++ |+.+
T Consensus 309 l~~~~~~-~~-~~~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKREK-TH-GEVERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTTS-CC-CHHHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hcccccc-cc-chHHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 9987752 22 2233445556777776 33 3456789999999999999999999999998886 9999
Q ss_pred HHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 302 ~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
+|.+|++.+++.. ..+.+.++..+.+|++++|.-.
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence 9999999888653 4557889999999999988643
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=7.7e-26 Score=230.40 Aligned_cols=207 Identities=18% Similarity=0.244 Sum_probs=154.8
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..++|+++.+......++.+- +..+. ...+...+.+.|+|+||+||||||||+||++||.+++.+++.++++++.+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 566788887753333333321 11111 1112234778899999999999999999999999999999999999999989
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
.|...+.++.+|..+ ....||++||||||.+...++... ......+.+. .|+..++ +. ....
T Consensus 105 ~g~~~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-~LL~~Ld--------g~---~~~~ 168 (499)
T 2dhr_A 105 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-QLLVEMD--------GF---EKDT 168 (499)
T ss_dssp TTHHHHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-HHHHHGG--------GC---CSSC
T ss_pred hhhHHHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-HHHHHhc--------cc---ccCc
Confidence 998888899999887 567899999999999987664210 1111122222 3333333 33 4456
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
.+++|++||+++.||++++|||||++.+.+ |+.++|.+|++.+++.. .++...++..+.||+|++|.
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~ 241 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 241 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHH
T ss_pred cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHH
Confidence 689999999999999999999999999986 99999999999887643 44577888889999998875
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=5.7e-25 Score=203.27 Aligned_cols=207 Identities=18% Similarity=0.247 Sum_probs=148.6
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..++|+++.+...+..++.+ +..... ...+...+...|+|++|+||||||||+|++++|..++..++.+++..+.+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 45667787765333333322 111111 1122334678889999999999999999999999999999999988887777
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCC--ccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~--~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
.+...+.++.+|+.+ ....|++++|||+|.+...+... .......+.+ ..++..++ +. ....
T Consensus 90 ~~~~~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-~~ll~~l~--------g~---~~~~ 153 (254)
T 1ixz_A 90 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-NQLLVEMD--------GF---EKDT 153 (254)
T ss_dssp TTHHHHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHH-HHHHHHHH--------TC---CTTC
T ss_pred hhHHHHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHH-HHHHHHHh--------CC---CCCC
Confidence 887778888888887 56789999999999987665311 0111112222 23333333 22 3345
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcc
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dld 334 (351)
.++++++||+|+.||++++|++||++.+++ |+.++|.+|++.+.+. ..++...++..++||+|++|.
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 226 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 226 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 578899999999999999999999999996 9999999999887754 345578899999999998875
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1.2e-24 Score=205.14 Aligned_cols=180 Identities=17% Similarity=0.282 Sum_probs=137.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
.++.++||+||||||||++|+++|++++.+++.++++.+...+.|+.+..++.+|..+ ....|++|||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhcc
Confidence 4578999999999999999999999999999999999999999999999999999888 778999999999999987
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHH
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 304 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~ 304 (351)
.+.. .......+ +...|+..++ +........++.||+|||+++.++++++| ||+..+++ |+.++|.
T Consensus 128 ~~~~-~~~~~~~~-~~~~ll~~l~--------~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSS-SEHEASRR-LKTEFLVEFD--------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHH-HHHHHHHHHH--------HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred cccc-CcchHHHH-HHHHHHHHHh--------cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 7642 11122222 2334444555 22111223568999999999999999998 78777774 9999999
Q ss_pred HHHHHhhcCCC--CC---HHHHHHHhcCCCCCCcc------ccchhhcc
Q 018745 305 GVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIG------KFPVPLMM 342 (351)
Q Consensus 305 ~Il~~~~~~~~--~~---~~~l~~l~~gf~g~dld------f~galr~~ 342 (351)
+|++.++...+ ++ .+.++..+.||+|++|. +.+|+|.+
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998876543 33 44577788999998874 34666654
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=212.30 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=140.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.+.++++|||||||||||++|+++|++++.+++.++++++.+.+.|+.++.++.+|..+ ....|++|||||||.+.
T Consensus 114 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLL 189 (357)
T ss_dssp GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHT
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhh
Confidence 35689999999999999999999999999999999999999999999999999999888 77889999999999998
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHH
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 303 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R 303 (351)
..+.. ..... ...+...|+..++ +.. .....++.||+|||+++.|+++++| ||+..+++ |+.++|
T Consensus 190 ~~~~~-~~~~~-~~~~~~~lL~~l~--------~~~-~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 190 SQRGD-GEHES-SRRIKTEFLVQLD--------GAT-TSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp BC-------CH-HHHHHHHHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred ccCCC-CcchH-HHHHHHHHHHHHh--------ccc-ccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 87642 11222 2333344555555 221 1224678999999999999999998 88877775 999999
Q ss_pred HHHHHHhhcCCC--CC---HHHHHHHhcCCCCCCccc------cchhhccC
Q 018745 304 IGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIGK------FPVPLMMQ 343 (351)
Q Consensus 304 ~~Il~~~~~~~~--~~---~~~l~~l~~gf~g~dldf------~galr~~q 343 (351)
.+|++.++...+ ++ .+.+++.++||++++|.. .+++|+++
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999998886643 33 455778889999998763 46777654
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=1.2e-26 Score=215.66 Aligned_cols=207 Identities=17% Similarity=0.204 Sum_probs=146.7
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..++|+++.+...+...+.+.+. .+. ...+...+.+.|.++|||||||||||++|+++|++++.+++.++++.+.+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 34567787776555555544222 111 1112223677889999999999999999999999999999999999998888
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc---chhhhHHHHHHHHHhhcCCccccCCCCcccC-C
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKE-E 265 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~---~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~-~ 265 (351)
.|..+..++.+|..+ ....|++|||||+|.+...+..... .....+.+ ..++. .+.+.. .
T Consensus 85 ~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~----~~ll~--------~l~~~~~~ 148 (268)
T 2r62_A 85 VGLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTL----NQLLA--------EMDGFGSE 148 (268)
T ss_dssp SSSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSST----TTTTT--------TTTCSSCS
T ss_pred cchHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHH----HHHHH--------HhhCcccC
Confidence 888777778888888 6678999999999999876531100 00000011 11111 221112 2
Q ss_pred CCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 266 ~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
..++.||+|||.++.+|++++|++||+..+++ |+.++|.+|++.+++.. ..+.+.++..+.||+|++|.
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 34589999999999999999999999988885 99999999999887653 34466777788888887765
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=212.47 Aligned_cols=216 Identities=17% Similarity=0.227 Sum_probs=143.7
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
+..+|++++|...+...+.+.+........+......++.++|||||||||||++|++||++++.+++.++++.+...+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 44567888876433333333222222111111112245689999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|+.+..++.+|..+ ....|+||||||||.+...+.. .......+ +...|+..++ +. ......++.
T Consensus 190 g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~~~~~-~~~~~~~~-~~~~ll~~l~--------~~-~~~~~~~v~ 254 (389)
T 3vfd_A 190 GEGEKLVRALFAVA----RELQPSIIFIDQVDSLLCERRE-GEHDASRR-LKTEFLIEFD--------GV-QSAGDDRVL 254 (389)
T ss_dssp --CHHHHHHHHHHH----HHSSSEEEEEETGGGGC---------CTHHH-HHHHHHHHHH--------HH-C-----CEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEECchhhcccCCC-ccchHHHH-HHHHHHHHhh--------cc-cccCCCCEE
Confidence 99999999999998 7889999999999999877642 11222233 3334444444 22 011246789
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CC---HHHHHHHhcCCCCCCcc------ccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIG------KFP 337 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~---~~~l~~l~~gf~g~dld------f~g 337 (351)
||+|||+++.|+++++| ||+..+++ |+.++|.+|++.++...+ ++ .+.++..++||++++|. +.+
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998 88876665 999999999998887644 33 44677788999998874 346
Q ss_pred hhhccC
Q 018745 338 VPLMMQ 343 (351)
Q Consensus 338 alr~~q 343 (351)
++|++.
T Consensus 333 ~~rel~ 338 (389)
T 3vfd_A 333 PIRELK 338 (389)
T ss_dssp HHHTSC
T ss_pred HHHhhh
Confidence 677643
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.90 E-value=7.6e-24 Score=198.80 Aligned_cols=207 Identities=18% Similarity=0.255 Sum_probs=147.7
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..++|+++.+...+..++.+ +..... ...+...+...|.|++|+||||||||+|++++|..++..++.+++..+.+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 45667777765333322221 111111 1112334677889999999999999999999999999999999988887777
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
.+...+.++.+|+.+ ....|++++|||+|.+...+.... ......+.+. .++..++ +. ....
T Consensus 114 ~~~~~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-~ll~~ls--------gg---~~~~ 177 (278)
T 1iy2_A 114 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-QLLVEMD--------GF---EKDT 177 (278)
T ss_dssp TTHHHHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHH-HHHHHHT--------TC---CTTC
T ss_pred hhHHHHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-HHHHHHh--------CC---CCCC
Confidence 777777888888887 567899999999998876553110 0111122222 2333333 22 3344
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcc
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dld 334 (351)
.++++++||+++.||++++|++||++.+++ |+.++|.+|++.+.+. ..++...++..++||+|++|.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 578899999999999999999999999886 9999999999887754 345577888889999998876
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=6.3e-26 Score=243.04 Aligned_cols=176 Identities=22% Similarity=0.349 Sum_probs=143.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
++.++.++|||||||||||+||+++|++++.+++.++++++.++|.|+.++.++.+|..| +...||||||||||++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 7788999999999999
Q ss_pred cCCCCCCcc-chhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 225 AGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 225 ~~~r~~~~~-~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
...+++... .......+...|+..++ +. ....++.||+|||+++.||+|++|||||++.+++ |+.+
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~~ld--------~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred hhhccCCCCCcchhHHHHHHHHHHHHh--------cc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHH
Confidence 988763211 12222333344454444 33 4567899999999999999999999999988886 9999
Q ss_pred HHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCccc
Q 018745 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 302 ~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf 335 (351)
+|.+|++.+++.. .++.+.+++.+++|+|++|.-
T Consensus 652 ~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~ 689 (806)
T 1ypw_A 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp HHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHH
T ss_pred HHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHH
Confidence 9999999888653 455677888899999998853
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=1.2e-21 Score=210.01 Aligned_cols=208 Identities=19% Similarity=0.266 Sum_probs=165.8
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~ 188 (351)
...++|+++.|.......+.+.+...+.. ..+...+++++.++||+||||||||+||+++|.+++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 34466788887666666665554443332 23345578899999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
+.|+.+..++.+|..+ ....|++|||||+|.+...++. .... ..+.+...|+.+++ +. .....
T Consensus 278 ~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~-~~~~-~~~~~~~~Ll~ll~--------g~---~~~~~ 340 (806)
T 1ypw_A 278 LAGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGE-VERRIVSQLLTLMD--------GL---KQRAH 340 (806)
T ss_dssp STTHHHHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTSC-CCSH-HHHHHHHHHHHHHH--------SS---CTTSC
T ss_pred hhhhHHHHHHHHHHHH----HhcCCcEEEeccHHHhhhcccc-ccch-HHHHHHHHHHHHhh--------hh---ccccc
Confidence 9999999999999998 7778999999999999987652 2222 33344556677776 43 34567
Q ss_pred ceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 269 v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
+.+|+|||+++.+|+++.|++||+..+.+ |+.++|.+|++.++... ..+...++..+.+|+++++.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~ 412 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHH
Confidence 89999999999999999999999998885 99999999999887653 44577888889999988764
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=1.2e-22 Score=204.20 Aligned_cols=173 Identities=10% Similarity=0.031 Sum_probs=110.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+..+|+++|||||||||||++|+++|++++ .+++.++++++.+++.|+.++ +++.|..|.. .+...||+|||||+|
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid 136 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVT 136 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechh
Confidence 455679999999999999999999999999 999999999999999999887 8888887621 125679999999999
Q ss_pred cccCCCCCCccchhhhHHHH------------------HHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 223 AGAGRMGGTTQYTVNNQMVN------------------ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~------------------~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
+++.++...... ....... ..++.-++ . .+......+.|++|||+++.+|++
T Consensus 137 ~l~~~r~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~--------~-~~~~~~~~v~i~attn~~~~ld~a 206 (456)
T 2c9o_A 137 ELTPCETENPMG-GYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ--------K-ERVEAGDVIYIEANSGAVKRQGRC 206 (456)
T ss_dssp EEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHH--------H-TTCCTTEEEEEETTTCCEEEEEEE
T ss_pred hcccccCCCCCC-CcchHHHHHHHHHhccccchhHhhhHHHHHHHh--------h-ccCCCCCEEEEEcCCCCcccCChh
Confidence 999887522110 0000000 01111111 0 011223345666999999999999
Q ss_pred hccCCcceE----EEeCCCH--HHHHHHHHHhhcCCCCCHHHHHHHhcCCCCCCcc
Q 018745 285 LIRDGRMEK----FYWAPTR--EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 285 LlR~gRfd~----~i~~P~~--e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g~dld 334 (351)
++|+||||+ .+..|+. ++|.+|++.+... +.+.+++.++| |+||.
T Consensus 207 ~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~ 257 (456)
T 2c9o_A 207 DTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDIL 257 (456)
T ss_dssp TTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC------------
T ss_pred hcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHH
Confidence 999999998 4444643 5577776544322 34555555666 55554
No 31
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=1.2e-18 Score=162.46 Aligned_cols=170 Identities=11% Similarity=0.127 Sum_probs=116.1
Q ss_pred hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChH----HHHHHHHHHHHHHHHhCCceE
Q 018745 140 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 140 ~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~----~~ir~~f~~A~~~~~~~~p~I 215 (351)
.+...+.+.+.++|||||||||||++|+++|++++.+++.+++++ .+.|... ..++.+|..+ ....+++
T Consensus 55 ~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~v 127 (272)
T 1d2n_A 55 QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQLSC 127 (272)
T ss_dssp HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSEEE
T ss_pred HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCCcE
Confidence 333345577899999999999999999999999999999887764 3344332 4566777776 6678999
Q ss_pred EEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEE
Q 018745 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (351)
Q Consensus 216 L~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i 295 (351)
|||||+|.+++.+.... .. ...+...|..+++ .. .....++.||+|||.++.+++..++ +||+..+
T Consensus 128 l~iDEid~l~~~~~~~~--~~-~~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i 193 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGP--RF-SNLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTI 193 (272)
T ss_dssp EEECCHHHHTTCBTTTT--BC-CHHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEE
T ss_pred EEEEChhhhhccCCCCh--hH-HHHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceEE
Confidence 99999999976653111 11 2233345555555 21 1124567899999999988884333 5999999
Q ss_pred eCCCHHHHHHHHHHhhcCCCCCHHHHHHHhcCCCC
Q 018745 296 WAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 330 (351)
Q Consensus 296 ~~P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g 330 (351)
.+|+..+|.+|...+.+...++.+.+..++....|
T Consensus 194 ~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 194 HVPNIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp ECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred cCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 99877777666555544455665555555444333
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.1e-17 Score=157.80 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=116.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC-------CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg-------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~I 218 (351)
.+.+..+|||||||||||++|+++|++++ .+++.++++.+.+.+.|.....+...|..+ .+++|||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 35567899999999999999999999983 378999999999999999888888887776 5789999
Q ss_pred cccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcceE
Q 018745 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 293 (351)
Q Consensus 219 DEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRfd~ 293 (351)
||+|.+...+.+ ..........|+++++ ....++.+|+|||..+ .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~----~~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCc----ccccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 999999865531 1123344556777776 2245678999998654 35688887 8887
Q ss_pred EEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHh
Q 018745 294 FYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV 325 (351)
Q Consensus 294 ~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~ 325 (351)
.+.+ |+.+++.+|++.++...+ ++.+.+..+.
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~ 233 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALR 233 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7775 999999999988886543 4454444443
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.69 E-value=3.7e-17 Score=164.03 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.|+++||+||||||||++|+++|+.++.+++.++++.+.+ +|.|+ .+..++.+|..|... +++||+|.+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~~ 120 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKNR 120 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhhh
Confidence 5689999999999999999999999999999999999887 69995 789999999988332 3489998876
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEE-eCCCCCCcchhccCCcceEEEeC--CCHH-
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYWA--PTRE- 301 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~T-TN~~~~Ld~aLlR~gRfd~~i~~--P~~e- 301 (351)
....+ .... .+...|+..+| ++ .....+ +++ ||+++.||+||+|+||||+.|++ |+..
T Consensus 121 ~~~~~----~~e~-rvl~~LL~~~d--------g~---~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~ 182 (444)
T 1g41_A 121 ARAED----VAEE-RILDALLPPAK--------NQ---WGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchh----hHHH-HHHHHHHHHhh--------cc---cccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence 44321 2222 23334444444 44 222233 555 99999999999999999999997 7776
Q ss_pred HHHHHH
Q 018745 302 DRIGVC 307 (351)
Q Consensus 302 ~R~~Il 307 (351)
.|.+|+
T Consensus 183 ~~~ei~ 188 (444)
T 1g41_A 183 MGVEIM 188 (444)
T ss_dssp ------
T ss_pred chhhhh
Confidence 577765
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.68 E-value=1.9e-16 Score=162.74 Aligned_cols=166 Identities=19% Similarity=0.280 Sum_probs=109.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~I 218 (351)
.+..+||+||||||||++|++||..++.+++.++++.+.. .+.|.....+.+.|..+ ....| +|||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 4568999999999999999999999999999998876533 34455555555566655 33445 9999
Q ss_pred cccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc--CCCCCceEEEEeCCCCCCcchhccCCcceEEEe
Q 018745 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (351)
Q Consensus 219 DEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~--~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~ 296 (351)
||||.+...+.+. ....|++++++.....+...+.. ....++.+|+|||+++.++++|++ ||+. +.
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v-i~ 249 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEI-IN 249 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEE-EE
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcce-ee
Confidence 9999987654311 23456666664332222111111 223678999999999999999998 8864 55
Q ss_pred C--CCHHHHHHHHHHhhcC------------CCCCHHHHHHHhcCCCC
Q 018745 297 A--PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG 330 (351)
Q Consensus 297 ~--P~~e~R~~Il~~~~~~------------~~~~~~~l~~l~~gf~g 330 (351)
+ |+.+++.+|++.++.. -.++.+.+..++..|++
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 4 9999999998887621 13457788888887775
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.67 E-value=1.6e-16 Score=148.97 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=109.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc-CCCCC-hHHHHHHHHHHHHHHHH-hCCceEEEeccccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLMINDLDA 223 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~ 223 (351)
..|.++||+||||||||++|+++|+.++.+++.++++.+.+ .+.|. ....++.++..+...+. ...+++|||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 35679999999999999999999999999999999988765 55543 23456666654311112 23578999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEE----eCCCCCCcchhccCCcceEEEeC--
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA-- 297 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~T----TN~~~~Ld~aLlR~gRfd~~i~~-- 297 (351)
+.....+ .........+...|+.+++...... ..+.....++.+|++ ++.+..+++++++ ||+..+.+
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEec---ccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9876532 2234444455667777777321100 011123457788888 4678889999985 88876776
Q ss_pred CCHHHHHHHHH
Q 018745 298 PTREDRIGVCK 308 (351)
Q Consensus 298 P~~e~R~~Il~ 308 (351)
|+.+++.+|++
T Consensus 202 ~~~~~~~~il~ 212 (310)
T 1ofh_A 202 LSAADFERILT 212 (310)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 89999999987
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=2.2e-16 Score=136.12 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCcccc--CCCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s--~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
..+..++|+||||||||++|+++++++ +.+++.++...+.. .+.+.....++.++... .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 346789999999999999999999987 67778887766642 33344444555555544 1356789
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~g 289 (351)
+|+|||+|.+........... +...|..+++ ..++.+|++||.++ .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~~~-----~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAMD-----AGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CCC-----CHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchHH-----HHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 999999999875542111111 1122223333 24578999999886 78999997
Q ss_pred cceEEEeC--CCHHHHHHHH
Q 018745 290 RMEKFYWA--PTREDRIGVC 307 (351)
Q Consensus 290 Rfd~~i~~--P~~e~R~~Il 307 (351)
||+. +.+ |+.+++.+|+
T Consensus 176 r~~~-i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEE-EECCCCCHHHHHTTC
T ss_pred Hhce-eecCCCCHHHHHHHh
Confidence 7874 454 9999998875
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=4.2e-15 Score=142.13 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
+.+..+||+||||||||++|+++|++++.+++.+++..+. ....+...+.. ...+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN------LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh------ccCCCEEEEechhhcCH
Confidence 4566899999999999999999999999999999887552 12223322222 46789999999997642
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCC----c-ccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM----Y-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~----~-~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
.....|+..+++.....+.+. . -....+++.+|++||+...++++|++ ||+..+.+ |+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 123445555553221111100 0 00112358899999999999999987 78777776 99
Q ss_pred HHHHHHHHHHhhcCCC--CCHHHHHHHhcCCCCC
Q 018745 300 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ 331 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~g~ 331 (351)
.+++.++++..+...+ ++.+.+..++..+.|.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 9999999988876544 5566677777655443
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=2.4e-16 Score=153.22 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=108.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~-~~Ge~-~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.+.++||+||||||||++|++||+.++.+++.++++.+... +.|.. ...++..|..+...+....+++|||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 56899999999999999999999999999999999887643 55554 45566666654222234568999999999998
Q ss_pred CCCCCC-ccchhhhHHHHHHHHHhhcCCccccCCCCc---------ccCCCCCceEEEEeCCC----------CC-----
Q 018745 226 GRMGGT-TQYTVNNQMVNATLMNIADNPTCVQLPGMY---------NKEENPRVPIIVTGNDF----------ST----- 280 (351)
Q Consensus 226 ~~r~~~-~~~~~~~~~v~~~L~~lld~~~~~~l~~~~---------~~~~~~~v~II~TTN~~----------~~----- 280 (351)
..+.+. .......+.+...|+.+++.. .+.++... ......++++|+|+|.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~-~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~g 208 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGT-VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIG 208 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC-----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC---
T ss_pred ccccccccccccchHHHHHHHHHHhcCc-eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCC
Confidence 776422 223334445777888888821 11111000 01234667788887753 11
Q ss_pred ------------------------------CcchhccCCcceEEEeC--CCHHHHHHHHHH
Q 018745 281 ------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCKG 309 (351)
Q Consensus 281 ------------------------------Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~ 309 (351)
+.|+|+ +||+..+.. |+.+++.+|+..
T Consensus 209 f~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~--~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 209 FGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI--GRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ---------CCSCHHHHHHTCCHHHHHHHTCCHHHH--TTCCEEEECCCCCHHHHHHHHHS
T ss_pred ccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh--cccCeeeecCCCCHHHHHHHHHH
Confidence 677777 589998875 899999998765
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=1.7e-15 Score=144.50 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=106.5
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~ 188 (351)
.|+|++++.+.. . ......++.+...++ +.+.+++||||||||||+||+++++++ +.+++.+++..+...
T Consensus 7 ~~~f~~fv~g~~--~----~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 7 KYTLENFIVGEG--N----RLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp TCCSSSCCCCTT--T----HHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCcccCCCCCc--H----HHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 467777763211 1 112233444544433 346789999999999999999999998 889999987765332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
+.+.........|... ...+++|||||+|.+...+. ....|..+++ .. .....
T Consensus 80 ~~~~~~~~~~~~~~~~-----~~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~--------~~---~~~~~ 132 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNM-----YKSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN--------TL---YLLEK 132 (324)
T ss_dssp HHHHHHHTCHHHHHHH-----HHTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH--------HH---HHTTC
T ss_pred HHHHHHcCcHHHHHHH-----hcCCCEEEEcCcccccCChH-----------HHHHHHHHHH--------HH---HHCCC
Confidence 2111100001112211 23588999999998764321 1112233332 11 01122
Q ss_pred ceEEEEeCCCC---CCcchhccCCcce--EEEeC-CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCC
Q 018745 269 VPIIVTGNDFS---TLYAPLIRDGRME--KFYWA-PTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (351)
Q Consensus 269 v~II~TTN~~~---~Ld~aLlR~gRfd--~~i~~-P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf 328 (351)
..||+++|.+. .++++|.+ ||. ..+.+ |+.+++.+|++..+... .++.+.+..++...
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVS--RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred eEEEEecCChHHHHHhhhHhhh--cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 34444555544 68899987 664 56666 57889999998887643 45666666666555
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.59 E-value=3.1e-14 Score=137.30 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=96.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC--ccEEeccCccccCCCC--------------------------------
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAG-------------------------------- 191 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs~s~l~s~~~G-------------------------------- 191 (351)
..++.++|||||||||||++|+++|++++. +++.+++..+.+.+.+
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 146 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDV 146 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhh
Confidence 344689999999999999999999999975 6777776654443322
Q ss_pred -----------------ChHHHHHHHHHHHHHHHH-hC----CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhh
Q 018745 192 -----------------EPAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (351)
Q Consensus 192 -----------------e~~~~ir~~f~~A~~~~~-~~----~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~ll 249 (351)
+....++..+..+..... .+ .|+||||||+|.+.. .....|..++
T Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~l 213 (368)
T 3uk6_A 147 INSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRAL 213 (368)
T ss_dssp HTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHHT
T ss_pred hhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHHh
Confidence 223445555555433222 22 278999999997641 1233455555
Q ss_pred cCCccccCCCCcccCCCCCceEEEEe-----------CCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCC--C
Q 018745 250 DNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND--N 315 (351)
Q Consensus 250 d~~~~~~l~~~~~~~~~~~v~II~TT-----------N~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~--~ 315 (351)
++ ....+++++|. |.+..+++++++ ||..+.. .|+.+++.+|++..+... .
T Consensus 214 e~-------------~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 214 ES-------------DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp TC-------------TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred hC-------------cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 52 12233333333 357889999998 6665322 389999999998877654 3
Q ss_pred CCHHHHHHHh
Q 018745 316 VADDDIVKLV 325 (351)
Q Consensus 316 ~~~~~l~~l~ 325 (351)
++.+.+..++
T Consensus 279 ~~~~~l~~l~ 288 (368)
T 3uk6_A 279 MSEDAYTVLT 288 (368)
T ss_dssp BCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4544444333
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.56 E-value=6e-15 Score=127.16 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCcccc--CCCCChHHHHHHHHHHHHHHHH-hCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIK-KGKM 213 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s--~~~Ge~~~~ir~~f~~A~~~~~-~~~p 213 (351)
..+..++|+||||||||++|+++++++ +.+++.++...+.. .+.+.....++.++..+ . ...+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence 345689999999999999999999997 66777777655542 23333444455555554 3 3478
Q ss_pred eEEEecccccccCCCC-CCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhcc
Q 018745 214 CCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 287 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~-~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR 287 (351)
++|||||+|.+...+. ...+.. +...|..+++ ..++.+|++||.++ .++++++|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~-----~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALD-----AGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCC-----THHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred eEEEEeCHHHhcccccccccchH-----HHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999999999875543 111111 1222333333 24678999999875 68999998
Q ss_pred CCcceEEEeC
Q 018745 288 DGRMEKFYWA 297 (351)
Q Consensus 288 ~gRfd~~i~~ 297 (351)
||+. +.+
T Consensus 177 --R~~~-i~i 183 (187)
T 2p65_A 177 --RFQQ-ILV 183 (187)
T ss_dssp --HEEE-EEC
T ss_pred --hcCc-ccC
Confidence 8886 555
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.56 E-value=2.1e-14 Score=135.90 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=102.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
+.+..+||+||||||||++|++++++++.+++.++++.+.. ...+...+..+ ...+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 34578999999999999999999999999999888775522 12222222221 35788999999987642
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-----CCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-----~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
. ....|+.++++.....+.+.... ....++.+|++||++..+++++.+ ||+..+.+ |+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 1 12334444442211111111000 012467899999999999999986 77655664 99
Q ss_pred HHHHHHHHHHhhcCC--CCCHHHHHHHhcCCC
Q 018745 300 REDRIGVCKGIFRND--NVADDDIVKLVDTFP 329 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~ 329 (351)
.+++.++++.++... .++.+.+..++....
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 201 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRRSR 201 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc
Confidence 999999998887654 455555555554433
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.54 E-value=5.7e-14 Score=141.16 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=99.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~ 229 (351)
..+|||||||||||++|++||+.++.+++.+++.. ...+.++..+..+........+++|||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 58999999999999999999999999999888642 23466788888875544567899999999998753221
Q ss_pred CCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe--CCCCCCcchhccCCcceEEEe-CCCHHHHHHH
Q 018745 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 306 (351)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT--N~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~I 306 (351)
..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++.++
T Consensus 124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 12333344 1346677666 445689999998 5554332 3999999999
Q ss_pred HHHhhcC-------C--CCCHHHHHHHhcCC
Q 018745 307 CKGIFRN-------D--NVADDDIVKLVDTF 328 (351)
Q Consensus 307 l~~~~~~-------~--~~~~~~l~~l~~gf 328 (351)
++..+.. . .++.+.+..++...
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~ 204 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELV 204 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHC
Confidence 9888765 2 35555555555443
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=6.4e-14 Score=133.24 Aligned_cols=152 Identities=20% Similarity=0.276 Sum_probs=101.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
+.-+|+++++. .-.....++++. ..+.|..+|++||||||||++|+++|++++.+++.++++..
T Consensus 21 rP~~~~~ivg~---------~~~~~~l~~~l~--~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~----- 84 (324)
T 3u61_B 21 RPSTIDECILP---------AFDKETFKSITS--KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC----- 84 (324)
T ss_dssp CCCSTTTSCCC---------HHHHHHHHHHHH--TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----
T ss_pred CCCCHHHHhCc---------HHHHHHHHHHHH--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----
Confidence 33356666664 122233444444 34567789999999999999999999999999999997653
Q ss_pred CChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 191 GEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
+ ...++..+........ .+.+.+|||||+|.+.+ ......|..+++. ...++
T Consensus 85 ~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~-------------~~~~~ 137 (324)
T 3u61_B 85 K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEA-------------YSSNC 137 (324)
T ss_dssp C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHH-------------HGGGC
T ss_pred C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHh-------------CCCCc
Confidence 1 3445554444311111 23789999999997641 1123345555551 12456
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHH
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 308 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~ 308 (351)
.+|+|||.+..+++++++ ||.. +.+ |+.++|.+|++
T Consensus 138 ~iI~~~n~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~ 175 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQS--RCRV-ITFGQPTDEDKIEMMK 175 (324)
T ss_dssp EEEEEESSGGGSCTTHHH--HSEE-EECCCCCHHHHHHHHH
T ss_pred EEEEEeCCccccCHHHHh--hCcE-EEeCCCCHHHHHHHHH
Confidence 899999999999999998 5653 554 99898766643
No 45
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=9.1e-15 Score=146.46 Aligned_cols=183 Identities=15% Similarity=0.264 Sum_probs=105.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
..|+|++.+.+. ...+ ....++.+...++. +..++||||||||||+||++|++++ +..++.+++..+
T Consensus 100 ~~~tfd~fv~g~--~n~~----a~~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 100 PDYTFENFVVGP--GNSF----AYHAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp TTCSGGGCCCCT--TTHH----HHHHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCChhhcCCCC--chHH----HHHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 346778876321 1111 23334444444432 6689999999999999999999998 788888887655
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC
Q 018745 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~ 265 (351)
...+.+.........|... ....+++|||||+|.+.++.. . ...|+.+++ .. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~----~~~~~~vL~IDEi~~l~~~~~-------~----q~~l~~~l~--------~l---~- 224 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFREK----YRKKVDILLIDDVQFLIGKTG-------V----QTELFHTFN--------EL---H- 224 (440)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HTTTCSEEEEECGGGGSSCHH-------H----HHHHHHHHH--------HH---H-
T ss_pred HHHHHHHHHcccHHHHHHH----hcCCCCEEEEeCcccccCChH-------H----HHHHHHHHH--------HH---H-
Confidence 3211100000000111111 122789999999998765321 1 122333333 11 0
Q ss_pred CCCceEEEEeCC-CCC---CcchhccCCcce--EEEeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCC
Q 018745 266 NPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 266 ~~~v~II~TTN~-~~~---Ld~aLlR~gRfd--~~i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g 330 (351)
..+..||+||++ +.. ++++|++ ||. ..+.+ |+.++|.+|++..+... .++.+.+..++....|
T Consensus 225 ~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g 297 (440)
T 2z4s_A 225 DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD 297 (440)
T ss_dssp TTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS
T ss_pred HCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 123356666665 443 7888887 564 44554 99999999998877533 3444444444444433
No 46
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=5e-14 Score=137.30 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
..+..+|||||||||||++|+++|+.++.+++.+++..+. ..+.|.. ...+...+..+...+....+++|||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3457899999999999999999999999999999988775 4555543 3445555544321123457899999999998
Q ss_pred cCCCCCC-ccchhhhHHHHHHHHHhhcC
Q 018745 225 AGRMGGT-TQYTVNNQMVNATLMNIADN 251 (351)
Q Consensus 225 ~~~r~~~-~~~~~~~~~v~~~L~~lld~ 251 (351)
...+.+. .........+...|+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp --------------CHHHHHHHHHHHHC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhc
Confidence 8764321 11122223356778888873
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=1.9e-13 Score=145.00 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=109.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 215 (351)
.+..+||+||||||||++|+++|+.+ +..++.++.+.+. ..+.|+.+..++.+|..+ ....+++
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCeE
Confidence 45689999999999999999999987 5667777777665 457788888898888887 6667899
Q ss_pred EEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-----CCCcchhccCCc
Q 018745 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (351)
Q Consensus 216 L~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-----~~Ld~aLlR~gR 290 (351)
|||||+|.+.+...... . ..... +++. .+ ....++.+|++||.+ -.+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~~-~---~~~~~----~~L~--------~~---l~~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASG-G---QVDAA----NLIK--------PL---LSSGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSSS-C---HHHHH----HHHS--------SC---SSSCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCCc-c---hHHHH----HHHH--------HH---HhCCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 99999999987654111 1 11111 2222 11 224567899999864 367899998 8
Q ss_pred ceEEEeC--CCHHHHHHHHHHhhcC------CCCCH---HHHHHHhcCCCCC
Q 018745 291 MEKFYWA--PTREDRIGVCKGIFRN------DNVAD---DDIVKLVDTFPGQ 331 (351)
Q Consensus 291 fd~~i~~--P~~e~R~~Il~~~~~~------~~~~~---~~l~~l~~gf~g~ 331 (351)
|.. +.+ |+.+++.+|++.+... ..++. +.++.++.+|...
T Consensus 341 f~~-i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~ 391 (758)
T 1r6b_X 341 FQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIND 391 (758)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTT
T ss_pred ceE-EEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccc
Confidence 884 554 9999999998876532 23443 3455556665443
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.51 E-value=9e-14 Score=140.23 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~I 218 (351)
+..+||+||||||||++|+++|+.+ +.+++.++++ ..+.|+.+..++.+|..+ ....++||||
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iLfi 273 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIILFI 273 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEEEE
Confidence 4578999999999999999999997 7778877776 566677667788888887 6678999999
Q ss_pred cccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcceE
Q 018745 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 293 (351)
Q Consensus 219 DEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRfd~ 293 (351)
| +... ....|... .....+.+|++||..+ .+|++++| ||..
T Consensus 274 D------~~~~-----------a~~~L~~~---------------L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~ 319 (468)
T 3pxg_A 274 D------AAID-----------ASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RFQP 319 (468)
T ss_dssp C------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE
T ss_pred e------Cchh-----------HHHHHHHh---------------hcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc
Confidence 9 1100 11111111 1244688999999987 69999998 8875
Q ss_pred EEeC--CCHHHHHHHHHHhhcC----C--CCC---HHHHHHHhcCCCCC
Q 018745 294 FYWA--PTREDRIGVCKGIFRN----D--NVA---DDDIVKLVDTFPGQ 331 (351)
Q Consensus 294 ~i~~--P~~e~R~~Il~~~~~~----~--~~~---~~~l~~l~~gf~g~ 331 (351)
+.+ |+.+++.+|++.+... . .++ ...+..++.+|.+.
T Consensus 320 -i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 320 -IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp -EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred -ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 554 9999999999987754 2 333 34455666666654
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2e-14 Score=146.53 Aligned_cols=152 Identities=16% Similarity=0.217 Sum_probs=93.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChH-------HHHHHHHHHHHHHH-HhCCceEEEec
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADII-KKGKMCCLMIN 219 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~-------~~ir~~f~~A~~~~-~~~~p~IL~ID 219 (351)
.++++||+||||||||++|+++|++++.+++.++++.+......+.. ..++..|..+.+.. ....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 56899999999999999999999999999999998876432110000 00111121110000 13578999999
Q ss_pred ccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC--CCcchhccCCcceEEEe-
Q 018745 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW- 296 (351)
Q Consensus 220 EID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~--~Ld~aLlR~gRfd~~i~- 296 (351)
|+|.+..... . ....|.++++ ..++++|++||+.. .+ +++.| +...+.
T Consensus 156 Eid~l~~~~~-----~-----~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l-~~l~~---r~~~i~f 206 (516)
T 1sxj_A 156 EVDGMSGGDR-----G-----GVGQLAQFCR---------------KTSTPLILICNERNLPKM-RPFDR---VCLDIQF 206 (516)
T ss_dssp SGGGCCTTST-----T-----HHHHHHHHHH---------------HCSSCEEEEESCTTSSTT-GGGTT---TSEEEEC
T ss_pred CCCccchhhH-----H-----HHHHHHHHHH---------------hcCCCEEEEEcCCCCccc-hhhHh---ceEEEEe
Confidence 9999875421 0 1234444544 13456787777654 33 34544 223444
Q ss_pred -CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCC
Q 018745 297 -APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (351)
Q Consensus 297 -~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf 328 (351)
.|+.+++.+++..++... .++.+.+..+++..
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 499999999988776543 45555566555443
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=6.2e-14 Score=150.91 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=97.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 214 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~-~~p~ 214 (351)
.+.+++|+||||||||++|+++|+.+ +.+++.++.+.+. ..+.|+.+..++.+|..+ .. ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCCe
Confidence 34578999999999999999999998 8889999988886 467788888888888887 54 4789
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC----CCcchhccCCc
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGR 290 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~----~Ld~aLlR~gR 290 (351)
||||||+|.+.+...... .......|..+++ ..++.+|++||.++ .++++|.| |
T Consensus 266 iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCccc-----hHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 999999999876543111 1112222333333 34578999999775 47999998 7
Q ss_pred ceEEEe--CCCHHHHHHHHHHhhc------CCCCC---HHHHHHHhcCCCC
Q 018745 291 MEKFYW--APTREDRIGVCKGIFR------NDNVA---DDDIVKLVDTFPG 330 (351)
Q Consensus 291 fd~~i~--~P~~e~R~~Il~~~~~------~~~~~---~~~l~~l~~gf~g 330 (351)
|+. +. .|+.+++.+|++.++. ...++ ...+..++.+|..
T Consensus 324 f~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 324 FQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred Cce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 775 44 3999999999876654 22333 3345566666654
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.50 E-value=3.3e-13 Score=118.71 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=93.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~IL~IDEID~ 223 (351)
.++|+||||||||++++++++++ ...++.++++... ....++......... .....+++|+|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 3445666654321 112233222222000 0025789999999987
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
+... ....|..+++ ....++.+|+|||.+..+++++.+ |+. .+.+ |+.+
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~ 164 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKE 164 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHH
Confidence 6421 1234455555 123467899999999999999987 566 4554 8899
Q ss_pred HHHHHHHHhhcCC--CCCHHHHHHHhcCCCC
Q 018745 302 DRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 302 ~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g 330 (351)
+..++++..+... .++.+.+..++....|
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 165 AMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999988877533 4556666555543333
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.49 E-value=1.9e-13 Score=128.62 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=101.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC------------CCChHHHHHHHHHHHHHHHHhCCce
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------------AGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~------------~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
..+||+||||||||++|+++|+.+ +.+++.++++.+.... .|... ...+..+ +.....+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~---~~~~~~~---~~~~~~~ 121 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE---GGQLTEA---VRRRPYS 121 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT---CCHHHHH---HHHCSSE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc---cchHHHH---HHhCCCe
Confidence 579999999999999999999998 4568888877654321 11100 0112222 2345568
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-----------------
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND----------------- 277 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~----------------- 277 (351)
+|||||+|.+.. .+...|+.++++..... .........++.+|+|||.
T Consensus 122 vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~ 186 (311)
T 4fcw_A 122 VILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYER 186 (311)
T ss_dssp EEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSST
T ss_pred EEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccHHH
Confidence 999999987632 23455666666332110 1001122346779999998
Q ss_pred ---------CCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-----------CCCCHHHHHHHhc-CC
Q 018745 278 ---------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TF 328 (351)
Q Consensus 278 ---------~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-----------~~~~~~~l~~l~~-gf 328 (351)
...++++|+ +||+..+.. |+.+++.+|++.++.. ..++.+.+..+++ .|
T Consensus 187 l~~~~~~~~~~~~~~~l~--~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 187 IRDEVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp HHHHTHHHHHHHSCHHHH--TTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCHHHH--hcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence 457788888 489877775 8899999998776543 2455677777766 55
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=2.3e-13 Score=144.48 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=87.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 216 (351)
+.+..+||+||||||||++|+++|+.+ +..++.++. ..++.|+.+..++.+|..+ ....++||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEE
Confidence 344579999999999999999999997 677777666 4567777778899999988 67889999
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 291 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRf 291 (351)
||| +... ....|.. . .....+.+|+|||..+ .+|+++.| ||
T Consensus 272 fiD------~~~~-----------~~~~L~~-----------~----l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AAID-----------ASNILKP-----------S----LARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CC-----------C----TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cchh-----------HHHHHHH-----------H----HhcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 1000 1111111 1 2245689999999988 79999999 88
Q ss_pred eEEEeC--CCHHHHHHHHHHhhcC
Q 018745 292 EKFYWA--PTREDRIGVCKGIFRN 313 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~~~~~ 313 (351)
.. +++ |+.+++.+|++.+...
T Consensus 318 ~~-i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QP-IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EE-EECCCCCHHHHHHHHHHTTTT
T ss_pred cE-EEeCCCCHHHHHHHHHHHHHH
Confidence 54 665 9999999999977654
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=1.6e-12 Score=138.13 Aligned_cols=154 Identities=11% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCc-EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 148 VPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 148 ~p~-glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.|. .+||+||||||||++|+++|+.+ +.+++.++++++.+.+..... .++... +...+++|||||||.
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEK 590 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccc
Confidence 344 69999999999999999999998 678999999999877665411 112222 456778999999986
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC------------CcchhccCCcc
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRM 291 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~------------Ld~aLlR~gRf 291 (351)
+. ..+...|++++++-.... .........++.+|+|||.+.. +.|+|+ +||
T Consensus 591 ~~-------------~~~~~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~--~Rl 653 (758)
T 3pxi_A 591 AH-------------PDVFNILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI--NRI 653 (758)
T ss_dssp SC-------------HHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH--TTS
T ss_pred cC-------------HHHHHHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH--hhC
Confidence 52 234456677776321111 0111234567899999997655 677777 489
Q ss_pred eEEEeC--CCHHHHHHHHHHhhcC-----------CCCCHHHHHHHhc
Q 018745 292 EKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD 326 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~~~~~-----------~~~~~~~l~~l~~ 326 (351)
+..+.+ |+.+++.+|++.++.. -.++.+.+..+++
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 877776 8889999997665532 1345666666654
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=4.6e-13 Score=129.27 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh-----------CCccEEeccCccc-c-----------------CCCCCh-HHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 196 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l-----------g~~~i~vs~s~l~-s-----------------~~~Ge~-~~~ 196 (351)
..|..++|+||||||||++|+++++++ +..++.+++.... + ...+.. ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999988 8888888865432 1 001111 122
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHH-HHHhhcCCccccCCCCcccCCCCCceEEEEe
Q 018745 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT-LMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (351)
Q Consensus 197 ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~-L~~lld~~~~~~l~~~~~~~~~~~v~II~TT 275 (351)
+..++... ....+ +|||||+|.+..... . .. +..+++ . . .++.+|+||
T Consensus 123 ~~~l~~~l----~~~~~-vlilDEi~~l~~~~~----~--------~~~l~~l~~---------~----~-~~~~iI~~t 171 (384)
T 2qby_B 123 IDKIKNGT----RNIRA-IIYLDEVDTLVKRRG----G--------DIVLYQLLR---------S----D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHH----SSSCE-EEEEETTHHHHHSTT----S--------HHHHHHHHT---------S----S-SCEEEEEEC
T ss_pred HHHHHHHh----ccCCC-EEEEECHHHhccCCC----C--------ceeHHHHhc---------C----C-cceEEEEEE
Confidence 22222222 33334 999999998764321 0 11 223333 1 1 678999999
Q ss_pred CCC---CCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCH---HHHHHHhcCCCC
Q 018745 276 NDF---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVAD---DDIVKLVDTFPG 330 (351)
Q Consensus 276 N~~---~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~---~~l~~l~~gf~g 330 (351)
|.. +.+++++.+ ||...+.+ |+.++..+|++..+.. ..++. +.+++.+...+|
T Consensus 172 ~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 172 NDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp SSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 988 688999887 55445554 8999999998876542 34443 345555554444
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=2.2e-12 Score=114.38 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=90.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccC----------------cccc--CCCCChHHHHHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------ELES--GNAGEPAKLIRQRYREAADII 208 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s----------------~l~s--~~~Ge~~~~ir~~f~~A~~~~ 208 (351)
+.|..++|+||||||||+++++++++++......... .+.. .........++.++.......
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 3456899999999999999999999885432110000 0000 000112233444443320000
Q ss_pred HhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccC
Q 018745 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~ 288 (351)
....+.+|+|||+|.+.. .....|+.+++ ....++.+|+|||++..+++++.++
T Consensus 123 ~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp SSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred hcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHHH
Confidence 134579999999987521 12234455555 2245678999999999999998874
Q ss_pred CcceEEEeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHh
Q 018745 289 GRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLV 325 (351)
Q Consensus 289 gRfd~~i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~ 325 (351)
+ ..+.+ |+.++..++++..+... .++.+.+..++
T Consensus 177 --~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 177 --C-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp --S-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred --h-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3 34554 89999999998887644 34444444443
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.41 E-value=3.3e-13 Score=121.08 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
.+..++|+||||||||++|+++++++. ..++.++..++...... .+. ....+.+|||||+|.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------TGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------hccCCCEEEEeccccc
Confidence 467999999999999999999999874 67788887776543311 111 1246789999999987
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC----CCcchhccCCcceEEEeC--C
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGRMEKFYWA--P 298 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~----~Ld~aLlR~gRfd~~i~~--P 298 (351)
..... ....|..+++ .. .....+.+|+|||... .+++++.++......+.+ |
T Consensus 117 ~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~ 174 (242)
T 3bos_A 117 AGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPM 174 (242)
T ss_dssp TTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCC
T ss_pred cCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCC
Confidence 54311 1122333333 11 0112233677776433 456778763322366665 9
Q ss_pred CHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCC
Q 018745 299 TREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g 330 (351)
+.+++.+++..++... .++.+.+..++..+.|
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 9999999998887643 4667777777765554
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=1.2e-12 Score=122.73 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=95.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH--hCCceEEEecccccc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG 224 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~IL~IDEID~l 224 (351)
+|||||||||||++|+++++++ +..++.++++..... .. ++........... ...+.+|+|||+|.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DV----VRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TT----SSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HH----HHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 9999999999999999999987 345677776653221 11 1222222210001 256899999999876
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHH
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 302 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~ 302 (351)
... ....|..+++ ....++.+|++||.+..+++++.+ |+. .+.+ |+.++
T Consensus 115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA 165 (319)
T ss_dssp CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHH
T ss_pred CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHH
Confidence 321 1223444444 224567899999999999999987 454 3443 89999
Q ss_pred HHHHHHHhhcCCCC--CHHHHHHHhcCCCC
Q 018745 303 RIGVCKGIFRNDNV--ADDDIVKLVDTFPG 330 (351)
Q Consensus 303 R~~Il~~~~~~~~~--~~~~l~~l~~gf~g 330 (351)
+.+++..++...++ +.+.+..++....|
T Consensus 166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999888876544 56677766654433
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=8.7e-13 Score=126.66 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=88.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---------CCccEEeccCccccC----------------CCCChH-HHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPA-KLIRQR 200 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s~----------------~~Ge~~-~~ir~~ 200 (351)
..+..++||||||||||++++++++++ +..++.+++....+. ..|.+. ..+..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 556799999999999999999999998 778888887653211 112211 222222
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-
Q 018745 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF- 278 (351)
Q Consensus 201 f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~- 278 (351)
+.. +. .+.|++|||||+|.+...+. .+ ..|..+++.. ... ....++.+|++||++
T Consensus 122 ~~~----l~~~~~~~vlilDEi~~l~~~~~--------~~---~~l~~l~~~~-----~~~---~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 122 VKR----LSRLRGIYIIVLDEIDFLPKRPG--------GQ---DLLYRITRIN-----QEL---GDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHH----HTTSCSEEEEEEETTTHHHHSTT--------HH---HHHHHHHHGG-----GCC--------CEEEEECSCST
T ss_pred HHH----HhccCCeEEEEEccHhhhcccCC--------CC---hHHHhHhhch-----hhc---CCCceEEEEEEECCCc
Confidence 222 23 45589999999998754320 11 2233333300 011 114578899999988
Q ss_pred --CCCcchhccCCcceE-EEeC--CCHHHHHHHHHHhhc
Q 018745 279 --STLYAPLIRDGRMEK-FYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 279 --~~Ld~aLlR~gRfd~-~i~~--P~~e~R~~Il~~~~~ 312 (351)
+.+++++.+ ||.. .+.+ |+.++..+|++..+.
T Consensus 179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 788889887 5543 4444 889999999887754
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.7e-12 Score=124.99 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=90.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccccC----------C------CCChHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------N------AGEPAKLIRQR 200 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s~----------~------~Ge~~~~ir~~ 200 (351)
..|..++||||||||||++++++++++ .+.++.+++..+.+. . .+.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999998 356778887654321 1 23345566666
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
|.... -....++||+|||+|.+. . . ..|.++++ |......++.+|+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~---~----q--------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL---S----E--------KILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC---C----T--------HHHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh---c----c--------hHHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 66520 025678999999999987 1 1 12222222 01134567899999999875
Q ss_pred Ccchhcc--CCcce-EEEeC--CCHHHHHHHHHHhhc
Q 018745 281 LYAPLIR--DGRME-KFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 281 Ld~aLlR--~gRfd-~~i~~--P~~e~R~~Il~~~~~ 312 (351)
.+..|-+ ..||. ..+.. ++.++..+|++..+.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 4433321 13564 33443 999999999766653
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.39 E-value=1.3e-12 Score=138.53 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceEEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLMIN 219 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~-----~~Ge~~~~i-----r~~f~~A~~~~~~~~p~IL~ID 219 (351)
..+||+||||||||++|+++|+.++.+++.++++++... ..|.+...+ ..+... ++...+++||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEEEe
Confidence 479999999999999999999999999999998887542 333221111 111222 245668999999
Q ss_pred ccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC--------------------
Q 018745 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------------- 279 (351)
Q Consensus 220 EID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-------------------- 279 (351)
|||.+. ..+...|++++++..... .........++.||+|||...
T Consensus 565 Ei~~~~-------------~~~~~~Ll~~le~~~~~~--~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAH-------------PDVFNILLQVMDNGTLTD--NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSC-------------HHHHHHHHHHHHHSEEEE--TTTEEEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccC-------------HHHHHHHHHHhcCcEEEc--CCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 998652 124556777777321110 000112236688999999854
Q ss_pred -----CCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-----------CCCCHHHHHHHhc
Q 018745 280 -----TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD 326 (351)
Q Consensus 280 -----~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-----------~~~~~~~l~~l~~ 326 (351)
.++|+|+. ||+..+.+ |+.+++.+|++.++.. -.++.+.+..+++
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAE 692 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHH
Confidence 57788874 89888876 8899999998777641 1355666666654
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=2.9e-12 Score=122.19 Aligned_cols=141 Identities=13% Similarity=0.192 Sum_probs=91.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC------CccEEeccCccccCCCCChHHHHHHHHHHHHHH------------HHhCC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGK 212 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~------------~~~~~ 212 (351)
.+|||||||||||++|+++|++++ ..++.+++++.. ....+++........ .....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999864 346666665431 122333332222110 01235
Q ss_pred ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce
Q 018745 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (351)
Q Consensus 213 p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd 292 (351)
+.+|||||+|.+... ....|+.+++ .......+|++||.++.+++++.+ |+.
T Consensus 134 ~~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCc
Confidence 679999999876421 1234555555 112456788899999999999987 565
Q ss_pred EEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHhc
Q 018745 293 KFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVD 326 (351)
Q Consensus 293 ~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~ 326 (351)
. +.+ |+.++..++++..+...+ ++.+.+..+++
T Consensus 186 ~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~ 222 (353)
T 1sxj_D 186 K-FRFKALDASNAIDRLRFISEQENVKCDDGVLERILD 222 (353)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred e-EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3 443 889999999988876554 55555554444
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.36 E-value=5.2e-13 Score=127.46 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=79.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEE----eccCcc---------------------ccCCCCChHHHH------H
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGEL---------------------ESGNAGEPAKLI------R 198 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~----vs~s~l---------------------~s~~~Ge~~~~i------r 198 (351)
.++|||||||||||++|+++++.++..... +++... .....+.+...+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 359999999999999999999998631100 011100 000011111111 1
Q ss_pred HHHHHHH-----HHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCcc-ccCCCCcccCCCCCceEE
Q 018745 199 QRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPII 272 (351)
Q Consensus 199 ~~f~~A~-----~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-~~l~~~~~~~~~~~v~II 272 (351)
..+..+. ..+....+++|||||+|.+... ....|+.+++.... ....+. ......++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~-~~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGL-SIRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTC-CEEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecce-EEeeCCceEEE
Confidence 1222110 0111234789999999976421 22345555542110 010110 00112478899
Q ss_pred EEeCCCC-CCcchhccCCcceEEEeC--C-CHHHHHHHHHH
Q 018745 273 VTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCKG 309 (351)
Q Consensus 273 ~TTN~~~-~Ld~aLlR~gRfd~~i~~--P-~~e~R~~Il~~ 309 (351)
+|||..+ .++++|++ ||+..+.+ | +.+++.+|++.
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 9999755 89999997 78887776 5 67778788755
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=4.4e-12 Score=119.15 Aligned_cols=144 Identities=14% Similarity=0.181 Sum_probs=93.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH---hCCceEEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMI 218 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~---~~~p~IL~I 218 (351)
+.|. +|||||||+|||++|+++++++ ...++.+++++.. ....+++.+........ .+.+.+|+|
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 3444 9999999999999999999986 3346666654321 13445555444310000 334889999
Q ss_pred cccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC-
Q 018745 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 297 (351)
Q Consensus 219 DEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~- 297 (351)
||+|.+... ....|..+++ ....++.+|++||.+..+++++.++ +. .+.+
T Consensus 114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~sr--~~-~i~~~ 164 (323)
T 1sxj_B 114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQSQ--CA-ILRYS 164 (323)
T ss_dssp ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHTT--SE-EEECC
T ss_pred ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHhh--ce-EEeec
Confidence 999876421 1223444444 1235678899999999999999874 43 3443
Q ss_pred -CCHHHHHHHHHHhhcCC--CCCHHHHHHHhc
Q 018745 298 -PTREDRIGVCKGIFRND--NVADDDIVKLVD 326 (351)
Q Consensus 298 -P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~ 326 (351)
|+.++..+++...+... .++.+.+..+++
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 196 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIF 196 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 89999999998876543 344554444443
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.1e-11 Score=116.68 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=90.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC-----ccEEeccCccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~IL~IDEID~ 223 (351)
.+|||||||||||++|+++++.+.. .++.+++++.. ....++......... .....+.+|+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 4999999999999999999998632 35555554321 111222222221100 0125688999999987
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
+... ....|+.+++ .....+.+|+|||.++.+++++.+ |+. .+.+ |+.+
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ 172 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDE 172 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHH
Confidence 6321 1234555555 123467899999999999999886 455 3443 8889
Q ss_pred HHHHHHHHhhcCCC--CCHHHHHHHhc
Q 018745 302 DRIGVCKGIFRNDN--VADDDIVKLVD 326 (351)
Q Consensus 302 ~R~~Il~~~~~~~~--~~~~~l~~l~~ 326 (351)
+..++++..+...+ ++.+.+..++.
T Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~l~~ 199 (327)
T 1iqp_A 173 DIAKRLRYIAENEGLELTEEGLQAILY 199 (327)
T ss_dssp HHHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999988876655 45555554444
No 66
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.27 E-value=8.1e-12 Score=105.90 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
.+..|||+||||||||++|++|++.. +.+++ ++++.+.+. ......|..+ ..++|||||||.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34569999999999999999999987 67888 888876544 1233344444 5579999999976
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
... .+..|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 421 2233444443 223456799999974
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.27 E-value=4.9e-11 Score=114.51 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=92.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 202 (351)
+.|..+||+||+|||||++|+++|+.++.. ++.++... . .....+++++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 456789999999999999999999998653 12222211 0 11123455554
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCc
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld 282 (351)
.+......+.+.+|+|||+|.+.. .....|+.+++ ....++.+|++||++..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCH-------------HHHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 441000134578999999987631 12234555555 2245678999999999999
Q ss_pred chhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC--CHHHHHHHhc
Q 018745 283 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVD 326 (351)
Q Consensus 283 ~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~--~~~~l~~l~~ 326 (351)
+++.++ + ..+.+ |+.++..++++..+...++ +.+.+..+++
T Consensus 164 ~~l~sr--~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 164 VTILSR--C-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHTT--S-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHhh--e-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 998864 4 23443 8999999999888765443 4444444443
No 68
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=3.3e-12 Score=111.43 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=64.2
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCcc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGEL 185 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l 185 (351)
++.++|++.... .+ ..+.....+++|+.....+...+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 4 ~~~~~f~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 4 YWNANLDTYHPK---NV--SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CTTCCSSSCCCC---SH--HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhhCccccccCC---CH--HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 455667775543 11 223455667777776666667899999999999999999999887 666666655443
Q ss_pred ccCCCCChHHHHHHHHHHHH--HHH-HhCCceEEEecccccc
Q 018745 186 ESGNAGEPAKLIRQRYREAA--DII-KKGKMCCLMINDLDAG 224 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~--~~~-~~~~p~IL~IDEID~l 224 (351)
... +...+.... ..+ ....|.+|+|||++..
T Consensus 79 ~~~--------~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFR--------LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHH--------HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHH--------HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 221 111111100 011 1347889999999753
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=4.4e-11 Score=115.08 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
..+..++|+||||||||+|++++|++++.++...++..+.. ...+...+.. ....+|+||||++.+..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence 34567999999999999999999999999887776654421 2223332221 24568999999987642
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCcc-ccCC-CCc-c--cCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQLP-GMY-N--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~-~~l~-~~~-~--~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
+ +...|+..+.+... +.+. +.. . ......+.+|.+||++..|++++++ ||...+.+ |+
T Consensus 117 --------~-----~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 --------A-----VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp --------H-----HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred --------H-----HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 12222222221100 0000 000 0 0112456778899999999999987 67655554 99
Q ss_pred HHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCC
Q 018745 300 REDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g 330 (351)
.++..+|++...... .++.+.+..++....|
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G 214 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG 214 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC
Confidence 999999998776533 4556666666655544
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.25 E-value=2.3e-12 Score=119.14 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=91.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCccccCCCCChHHHHHHHHH-------HHH----HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYR-------EAA----DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~-------~A~----~~~~~~~p~ 214 (351)
+..+||+||||||||++|+++++.+. .+++.++++.+... .....+|. .+. ..+.....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~------~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~ 102 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH------HHHHHHHCCC---------CCCCHHHHTTTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh------HHHHHhcCCcccccccccccccchhhhcCCc
Confidence 46799999999999999999999874 67888988765211 11111221 110 011223568
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-------CCCcchhcc
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-------~~Ld~aLlR 287 (351)
+|||||+|.+.. ..+..|+.++++.......+. .....++.+|+|||.. ..+.++|..
T Consensus 103 ~l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 103 TLFLDELATAPM-------------MVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp EEEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred EEEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 999999997642 123445555552211000100 1123467899999984 246677775
Q ss_pred CCcce-EEEeCCCHHHHHH----HHHHhhc------C----CCCCHHHHHHHh-cCCCCC
Q 018745 288 DGRME-KFYWAPTREDRIG----VCKGIFR------N----DNVADDDIVKLV-DTFPGQ 331 (351)
Q Consensus 288 ~gRfd-~~i~~P~~e~R~~----Il~~~~~------~----~~~~~~~l~~l~-~gf~g~ 331 (351)
||. ..+.+|...+|.+ +++.++. . ..++.+.+..+. ..|+|.
T Consensus 168 --Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn 225 (265)
T 2bjv_A 168 --ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGN 225 (265)
T ss_dssp --HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTH
T ss_pred --hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCC
Confidence 675 4677777765532 3322221 1 145667776665 345553
No 71
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=5.3e-11 Score=113.94 Aligned_cols=145 Identities=15% Similarity=0.329 Sum_probs=86.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc-----------------------------cEEeccCccccCCCCChHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGELESGNAGEPAKLI 197 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~-----------------------------~i~vs~s~l~s~~~Ge~~~~i 197 (351)
+.|. ++|+||+|||||++++++|+++..+ ++.+..+. ........+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 109 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----MGNNDRIVI 109 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----cCCcchHHH
Confidence 4455 9999999999999999999975211 11121111 000111124
Q ss_pred HHHHHHHHHHHH----------hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 198 RQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 198 r~~f~~A~~~~~----------~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
++....+..... ...|.+|+|||+|.+.. .....|+.+++ ....
T Consensus 110 ~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~~ 163 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYSK 163 (354)
T ss_dssp HHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HSTT
T ss_pred HHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhcC
Confidence 444443311000 23678999999987421 11234455555 1134
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC--C-HHHHHHHh
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--A-DDDIVKLV 325 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~--~-~~~l~~l~ 325 (351)
+..+|++||+++.+.+++.+ |+ ..+.+ |+.++..++++..+..+++ + .+.+..++
T Consensus 164 ~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~ 223 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIA 223 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 57899999999999999886 45 33443 9999999999888765543 3 44444444
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.25 E-value=1.5e-11 Score=117.38 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=85.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHH-HHHHHHHHH-HhCC---ceEEEecccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADII-KKGK---MCCLMINDLDAG 224 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~-~f~~A~~~~-~~~~---p~IL~IDEID~l 224 (351)
.++|||||||||||++|+++|+.++.+++.+.+..-. .+...+.. .+....... .... .++|||||+|.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~-----~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL-----LPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-----CHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC-----ChhhcCCceeecCCCCceEeccCcccccEEEEEccccC
Confidence 4799999999999999999999999998887763111 00000000 000000000 0112 379999999875
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcceEEEeC--
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYWA-- 297 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRfd~~i~~-- 297 (351)
.. .....|++.+++.. +.+.+. ......++.+|+|+|..+ .+++++++ ||+..+.+
T Consensus 122 ~~-------------~~~~~Ll~~l~~~~-~~~~g~-~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~ 184 (331)
T 2r44_A 122 PA-------------KVQSALLECMQEKQ-VTIGDT-TYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTY 184 (331)
T ss_dssp CH-------------HHHHHHHHHHHHSE-EEETTE-EEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCC
T ss_pred CH-------------HHHHHHHHHHhcCc-eeeCCE-EEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCC
Confidence 32 12234444544211 111111 011234567788888443 38999997 78776665
Q ss_pred CCHHHHHHHHHHhhcC
Q 018745 298 PTREDRIGVCKGIFRN 313 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~ 313 (351)
|+.+++.+|++.....
T Consensus 185 p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 185 LDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhcccc
Confidence 9999999999887654
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.25 E-value=3.2e-11 Score=129.84 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=99.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC-----CCCChHHHHH----HHHHHHHHHHHhCCceEEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLIR----QRYREAADIIKKGKMCCLM 217 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~~~ir----~~f~~A~~~~~~~~p~IL~ 217 (351)
..+||+||||||||++|+++++.+ +.+++.++++++... ..|.+...+. ..|..+ ++...+++||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence 589999999999999999999998 788999998877543 2222111110 112222 2455678999
Q ss_pred ecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-------------------
Q 018745 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------------------- 278 (351)
Q Consensus 218 IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~------------------- 278 (351)
|||+|.+. ..+...|+.++++.... +.........+++||+|||..
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998642 23456777788854311 111111234567899999972
Q ss_pred -------CCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-----------CCCCHHHHHHHhc
Q 018745 279 -------STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD 326 (351)
Q Consensus 279 -------~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-----------~~~~~~~l~~l~~ 326 (351)
..+.|+|+ .|++..+.. |+.++...|++.++.. -.++.+.+..++.
T Consensus 731 ~v~~~~~~~f~~~l~--~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHHHHHHTTSCHHHH--HTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHH--HhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 34556666 478766664 8889999997766541 1355666666654
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=6.4e-11 Score=113.33 Aligned_cols=141 Identities=15% Similarity=0.219 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh------CCccEEeccCcccc----------C------CCCChHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------G------NAGEPAKLIRQRYREA 204 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l------g~~~i~vs~s~l~s----------~------~~Ge~~~~ir~~f~~A 204 (351)
..+..++|+||+|||||+|++++++.+ +..++.+++....+ . ..+.+.. +.+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIA---ELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHH---HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH
Confidence 456789999999999999999999988 88888887543211 0 1111111 222222
Q ss_pred HHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC---CC
Q 018745 205 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST 280 (351)
Q Consensus 205 ~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~---~~ 280 (351)
.+.+. ...|++|+|||+|.+..... . .....|+..++ .. ...++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~----~-----~~l~~l~~~~~--------~~----~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN----D-----DILYKLSRINS--------EV----NKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC----S-----THHHHHHHHHH--------SC----CC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc----C-----HHHHHHhhchh--------hc----CCCeEEEEEEECCCChHhh
Confidence 22224 34599999999998764321 0 11223333343 11 24578899999987 46
Q ss_pred CcchhccCCcceEEEeC--CCHHHHHHHHHHhhc
Q 018745 281 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~ 312 (351)
+++.+.++... ..+.+ |+.++..+++...+.
T Consensus 179 ~~~~~~~r~~~-~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 179 LDPRVKSSLSE-EEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp CTTHHHHTTTT-EEEEECCCCHHHHHHHHHHHHH
T ss_pred hCHHHhccCCC-eeEEeCCCCHHHHHHHHHHHHH
Confidence 77888774321 24444 899999999887653
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=6.5e-11 Score=113.95 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=91.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCccccC----------------CCCChHHHHHHHHHHHHHHHH-
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK- 209 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~f~~A~~~~~- 209 (351)
.++|+||||||||++++++++.+ +..++.+++....+. ..+.+.. .++......+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRD---EFLALLVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHH---HHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHH---HHHHHHHHHHhh
Confidence 89999999999999999999998 567788876543210 0111111 12222222223
Q ss_pred hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC---CCCcchhc
Q 018745 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI 286 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~---~~Ld~aLl 286 (351)
...|.+|+|||+|.+ . ......|..+++ ... .....++.+|++||++ +.+++.+.
T Consensus 123 ~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~--------~~~-~~~~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL----A---------PDILSTFIRLGQ--------EAD-KLGAFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGS----C---------HHHHHHHHHHTT--------CHH-HHSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECcccc----c---------hHHHHHHHHHHH--------hCC-CCCcCCEEEEEEECCchHHHHhCHHhh
Confidence 456899999999976 1 122334445544 110 0001478899999998 67888877
Q ss_pred cCCcceE-EEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHh
Q 018745 287 RDGRMEK-FYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLV 325 (351)
Q Consensus 287 R~gRfd~-~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~ 325 (351)
+ ||.. .+.+ ++.++..++++..+.. ..++.+.+..+.
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 224 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIA 224 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHH
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 6 5553 4454 7888899998776643 356655444433
No 76
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=1.4e-10 Score=111.50 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=95.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc------------------------EEeccCccccCCCCChHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQR 200 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~------------------------i~vs~s~l~s~~~Ge~~~~ir~~ 200 (351)
..+.|..+|||||||+|||++|+++|+.+.... +.+.+.. .-...+...++++
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l 96 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREV 96 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHH
Confidence 346788999999999999999999999986432 2222210 0011233456666
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
.+.+...-..+.+.|++|||+|.+... ....|+..++ .+..++.+|++||+++.
T Consensus 97 ~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 97 TEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPER 150 (334)
T ss_dssp HHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGG
T ss_pred HHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHh
Confidence 665511001345789999999976321 1235666666 33456789999999999
Q ss_pred CcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHHHHHHHh
Q 018745 281 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLV 325 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~~l~~l~ 325 (351)
+.++++.+ +.. +.+ |+.++..+++.... .++.+.+..++
T Consensus 151 l~~ti~SR--c~~-~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~ 191 (334)
T 1a5t_A 151 LLATLRSR--CRL-HYLAPPPEQYAVTWLSREV---TMSQDALLAAL 191 (334)
T ss_dssp SCHHHHTT--SEE-EECCCCCHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred CcHHHhhc--cee-eeCCCCCHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 99999874 433 443 89999999987765 45555444333
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=6.6e-11 Score=113.62 Aligned_cols=150 Identities=13% Similarity=0.206 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC-----ccEEeccCccccCCCCChHHHHHHHHHHHHHHHH--hCCceEEEec
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMIN 219 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~IL~ID 219 (351)
+.|. +|||||||||||++|+++|+.+.. .++.++++.. .+ ...+++......+... ...+.|++||
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~~--~~~ir~~i~~~~~~~~~~~~~~~viiiD 117 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----RG--IDVVRNQIKDFASTRQIFSKGFKLIILD 117 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----CS--HHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----cc--HHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence 4454 999999999999999999998732 2455555431 11 2344444333211000 1347899999
Q ss_pred ccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--
Q 018745 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 297 (351)
Q Consensus 220 EID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~-- 297 (351)
|+|.+... ....|..+++ .......+|++||.+..+.++++. |+.. +..
T Consensus 118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~-~~~~~ 168 (340)
T 1sxj_C 118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTR-FRFQP 168 (340)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEE-EECCC
T ss_pred CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hcee-EeccC
Confidence 99976321 1234555555 223456788899999999999987 5553 443
Q ss_pred CCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCCCCCCc
Q 018745 298 PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 333 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~g~dl 333 (351)
++.++..+++...+..++ ++.+.+..++ .+++.++
T Consensus 169 l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~-~~s~G~~ 205 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEKLKLSPNAEKALI-ELSNGDM 205 (340)
T ss_dssp CCHHHHHHHHHHHHHTTTCCBCHHHHHHHH-HHHTTCH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHcCCCH
Confidence 788888888888875544 4444333333 3444443
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.16 E-value=6.9e-12 Score=106.20 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r 228 (351)
+..||||||||||||++|++++++.. +++.++++.+...+ ....+..+ ..++|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH-
Confidence 45699999999999999999999888 88888887654322 33444443 4689999999976421
Q ss_pred CCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
.+..|+.+++ .. ...++.+|+|||..
T Consensus 91 ------------~q~~Ll~~l~--------~~----~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIG--------KA----ERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHH--------HH----TTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHH--------hC----CCCCEEEEEecCCC
Confidence 2233455554 11 13457799999865
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=3.2e-12 Score=132.71 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=83.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe----ccCccccCCCCChH----HHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v----s~s~l~s~~~Ge~~----~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
.+||+||||||||+||+++|+.++..++.. +...+......... ..-...+. ....++|||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-------~A~~gil~IDEid 401 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-------LADGGIAVIDEID 401 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-------HHSSSEECCTTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-------ecCCCcEEeehhh
Confidence 799999999999999999999887554332 22222111111000 00000111 2245899999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-------------CCcchhccCC
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-------------~Ld~aLlR~g 289 (351)
.+... ....|++++++........-.......++.||+|||... .|++||++
T Consensus 402 ~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~-- 466 (595)
T 3f9v_A 402 KMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS-- 466 (595)
T ss_dssp CCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--
T ss_pred hCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--
Confidence 76432 234566666632211000000112246788999999887 89999997
Q ss_pred cceEEEeC---CCHHHHHHHHHHhhc
Q 018745 290 RMEKFYWA---PTREDRIGVCKGIFR 312 (351)
Q Consensus 290 Rfd~~i~~---P~~e~R~~Il~~~~~ 312 (351)
|||..+.+ |+.+ ...|.+.++.
T Consensus 467 RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 467 RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 89865553 7777 7777776664
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.13 E-value=2.2e-11 Score=123.97 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=76.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC--ccEEeccC-----ccccCCCCChHHHHHHHHHHHHHHHHhC---CceEEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-----ELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMIN 219 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs~s-----~l~s~~~Ge~~~~ir~~f~~A~~~~~~~---~p~IL~ID 219 (351)
..+||+||||||||++|+++|+.++. ++..+... ++...+.+..... ...|..+ ..+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeHH
Confidence 48999999999999999999998854 33333332 1111111110000 1111111 122 46799999
Q ss_pred ccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC---CcchhccCCcceEEEe
Q 018745 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 296 (351)
Q Consensus 220 EID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~---Ld~aLlR~gRfd~~i~ 296 (351)
||+.+. ..+...|+.++++-. +...+. ....+...+|+|||.... +.+++++ ||...++
T Consensus 117 EI~r~~-------------~~~q~~LL~~lee~~-v~i~G~--~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAG-------------PAILNTLLTAINERQ-FRNGAH--VEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCC-------------HHHHHHHHHHHHSSE-EECSSS--EEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhc-------------HHHHHHHHHHHHHHh-ccCCCC--cCCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 997532 123445666665221 111111 112223346888986432 3348886 7888888
Q ss_pred C--CCH-HHHHHHHHHhh
Q 018745 297 A--PTR-EDRIGVCKGIF 311 (351)
Q Consensus 297 ~--P~~-e~R~~Il~~~~ 311 (351)
+ |+. +++.+|++...
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 6 665 67888887654
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.11 E-value=5.5e-11 Score=139.91 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=88.4
Q ss_pred CcEEEEEcCCCccHHHHHHH-HHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-----------hCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCEL-VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~a-IA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~IL 216 (351)
.+++||+||||||||++|+. +++..+..++.++.+... +...+...+....+..+ .++++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 46899999999999999955 444446677777765432 22334444433210000 1345799
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-----CCCCCceEEEEeCCCC-----CCcchhc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFS-----TLYAPLI 286 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-----~~~~~v~II~TTN~~~-----~Ld~aLl 286 (351)
||||||.-...+.| + +...+.|-++++. .+++.. ....++.+|+|||.+. .|+++++
T Consensus 1341 FiDEinmp~~d~yg-~------q~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1341 FCDEINLPKLDKYG-S------QNVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEETTTCSCCCSSS-C------CHHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccccccccccC-c------hhHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999975444432 1 1223344444441 122221 1125688999999994 8999999
Q ss_pred cCCcceEEEeC--CCHHHHHHHHHHhhc
Q 018745 287 RDGRMEKFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 287 R~gRfd~~i~~--P~~e~R~~Il~~~~~ 312 (351)
| || ..+++ |+.+++..|+..++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9 66 34554 999999999777653
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.10 E-value=8e-11 Score=112.15 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC-----CCC--------ChHHHHHHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAG--------EPAKLIRQRYREAADIIKK 210 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~-----~~G--------e~~~~ir~~f~~A~~~~~~ 210 (351)
+.+..+||+||||||||++|++|++.. +.+++.++++.+-.. .+| ... .....|..|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------ 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------ 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence 345679999999999999999999976 567888988765321 001 000 011123333
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-------CCCcc
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYA 283 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-------~~Ld~ 283 (351)
..++|||||||.+.. ..+..|+.++++.....+.+. .....++.||+|||.. ..+++
T Consensus 96 -~~g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~ 159 (304)
T 1ojl_A 96 -DGGTLFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ 159 (304)
T ss_dssp -TTSEEEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred -CCCEEEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence 457999999987642 123456666663221111111 1224568899999985 12344
Q ss_pred hhccCCcc-eEEEeCCCHHHHH
Q 018745 284 PLIRDGRM-EKFYWAPTREDRI 304 (351)
Q Consensus 284 aLlR~gRf-d~~i~~P~~e~R~ 304 (351)
+|.. || ...+.+|...+|.
T Consensus 160 ~L~~--Rl~~~~i~lPpL~eR~ 179 (304)
T 1ojl_A 160 DLYY--RLNVVAIEMPSLRQRR 179 (304)
T ss_dssp HHHH--HHSSEEEECCCSGGGG
T ss_pred HHHh--hcCeeEEeccCHHHhH
Confidence 4443 44 3446677766553
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.04 E-value=4.1e-10 Score=99.54 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=58.8
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhhhCC-CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
.++.++|+++.... +. + +.....++.++... ....|.+++||||||||||+||+++++++ +..++.+++.+
T Consensus 18 ~~~~~~f~~~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 18 EILRASLSDVDLND---DG-R-IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp GGGCCCTTSSCCSS---HH-H-HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHcCCHhhccCCC---hh-H-HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 34556777765431 11 1 11223445555422 22234899999999999999999999988 56677776654
Q ss_pred cccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 185 LESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 185 l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
+....... ....+...+... ..+.+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~------~~~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYI------KKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHH------HHSSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCCCc
Confidence 43211000 000011111111 234699999997654
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.8e-09 Score=103.08 Aligned_cols=129 Identities=8% Similarity=-0.061 Sum_probs=88.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh------CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+..+|||||||+|||++|+++|+.+ ...++.++++. .. .+...+|++...+...-..+...|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4589999999999999999999875 23455555431 11 2344577777776110002345799999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeCCCHHH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~P~~e~ 302 (351)
.+-. .....|+..++ .+...+.+|++||.++.|.|+++.+ -..+..|+.++
T Consensus 93 ~lt~-------------~a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQ-------------QAANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKE 143 (305)
T ss_dssp GBCH-------------HHHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHH
T ss_pred HhCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHH
Confidence 7631 11345666666 3346678888889999999999874 33444588888
Q ss_pred HHHHHHHhh
Q 018745 303 RIGVCKGIF 311 (351)
Q Consensus 303 R~~Il~~~~ 311 (351)
..+++...+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887765
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.00 E-value=8.7e-10 Score=125.24 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=63.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc------------cCCCCC----hHHHHHHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAADIIKK 210 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~------------s~~~Ge----~~~~ir~~f~~A~~~~~~ 210 (351)
+.+|||||||||||+||++++.+. |.+.+.++..+.. ++|.++ +++.++.+|..| +.
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a----r~ 1158 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA----RS 1158 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH----HH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH----Hh
Confidence 449999999999999999999876 4556666665543 667777 899999999888 88
Q ss_pred CCceEEEecccccccCCC
Q 018745 211 GKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r 228 (351)
..||+||+|++|++++.+
T Consensus 1159 ~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp TCCSEEEESCGGGCCCHH
T ss_pred cCCeEEEeCchHhcCccc
Confidence 999999999999999884
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.99 E-value=2.1e-10 Score=109.62 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=57.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC----CccEEeccCccc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELE 186 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg----~~~i~vs~s~l~ 186 (351)
+.++|++...+.. . . ......++.|+....-..+.+++||||||||||+||.++|+++. ..++.++.+++.
T Consensus 119 ~~~tfd~f~~~~~--~--~-~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 119 RHIHLSDIDVNNA--S--R-MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp GSCCGGGSCCCSH--H--H-HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred HhCCHhhCcCCCh--H--H-HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 3456666554311 1 1 12233455665532212357999999999999999999998664 677777766543
Q ss_pred cCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 187 SGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 187 s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
..+... ....+...+.. .....+|||||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~------~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDA------VKNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHH------HHTSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHH------hcCCCEEEEcCCCCCC
Confidence 211100 00001111111 1245699999996543
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.92 E-value=1.2e-09 Score=105.36 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc--cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~--~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+++....++|+||||||||+||.++|.+.|.. ++.....+..+.+..+.+..+..+++.. ...+ +||||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEeccc
Confidence 45556678999999999999999999876555 4444223333433344444444444433 4433 99999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchh
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aL 285 (351)
.+.....+........+.+.+.|..+.. + ....++.+|+++| +...++++
T Consensus 193 aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 193 NVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 9865443111111112222222222221 0 1123567888888 56666664
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.84 E-value=5.8e-09 Score=89.20 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
....++|+||+|+|||+|+++++..+ |...+.++..++... + ...+|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence 45689999999999999999999988 777788887766543 1 1246889999999764
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.80 E-value=1.5e-08 Score=98.20 Aligned_cols=142 Identities=9% Similarity=0.098 Sum_probs=80.5
Q ss_pred CCcEEEE--EcCCCccHHHHHHHHHHHh---------CCccEEeccCccccC----------------CCCChHHHHHHH
Q 018745 148 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 200 (351)
Q Consensus 148 ~p~glLL--~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~ 200 (351)
.+..++| +||||+|||+|++++++.+ +..++.+++....+. ..+.+.. ++
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 455666665321100 0011111 12
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCC--CCceEEEEeCC
Q 018745 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND 277 (351)
Q Consensus 201 f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~--~~v~II~TTN~ 277 (351)
+....+.+. ...|.+|+|||+|.+...... .......|+.++. .. .... .++.+|+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~--------~~--~~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHE--------EI--PSRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHH--------HS--CCTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHH--------hc--ccCCCCceEEEEEEecc
Confidence 222222222 467999999999987543210 0111122233333 11 0012 56789999987
Q ss_pred CC---CCc---chhccCCcceEEEeC--CCHHHHHHHHHHhh
Q 018745 278 FS---TLY---APLIRDGRMEKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 278 ~~---~Ld---~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~ 311 (351)
++ .++ +.+.++ +...+.+ ++.++..+++...+
T Consensus 189 ~~~~~~l~~~~~~~~~~--~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 189 VRALSYMREKIPQVESQ--IGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp THHHHHHHHHCHHHHTT--CSEEEECCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHhhhcchhhhh--cCCeeeeCCCCHHHHHHHHHHHH
Confidence 66 233 555553 3333555 78888999886554
No 90
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.75 E-value=1.9e-08 Score=91.13 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
...+.++. +++...++|||||||||||++|.++|+.+.-.
T Consensus 46 ~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 46 GALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44555654 34445789999999999999999999998644
No 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.72 E-value=2.7e-08 Score=97.85 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
+++.+..++|+||||+|||+|+++++...+..++.+.... .. . .|... ......++++||++.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKGT 228 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHHH
Confidence 6677889999999999999999999998876554422211 10 1 11111 2234567899999988
Q ss_pred cC-CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeCCCHHH
Q 018745 225 AG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302 (351)
Q Consensus 225 ~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~P~~e~ 302 (351)
.. .+.-....... ....+.+.++ ..+.|+++||+++.+ ++++||+|++..++.+....
T Consensus 229 ~~~~r~l~~~~~~~---~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~~ 287 (377)
T 1svm_A 229 GGESRDLPSGQGIN---NLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKTL 287 (377)
T ss_dssp TTTTTTCCCCSHHH---HHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCCHHH
T ss_pred HHHHhhccccCcch---HHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhcHHH
Confidence 75 22200100000 0112222233 235789999999999 78999999999888755433
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=4.4e-08 Score=87.98 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH--------hC-CccEEeccCccccCCC----------CChHH--HHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA----------GEPAK--LIRQRYREAAD 206 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~--------lg-~~~i~vs~s~l~s~~~----------Ge~~~--~ir~~f~~A~~ 206 (351)
.+...|++|+||||||++|.+.+.. .| .+++..+...|.-... ..... .....+..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-- 81 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-- 81 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT--
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh--
Confidence 3558999999999999999886443 34 5565566554532221 11000 001122221
Q ss_pred HHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhc
Q 018745 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLl 286 (351)
....++.+||+|||++.+.+.+....+ ..+++. ++.. .....+-||++|+.++.|+.+++
T Consensus 82 ~~~~~~~~vliIDEAq~l~~~~~~~~e---~~rll~----~l~~-------------~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 82 KKPENIGSIVIVDEAQDVWPARSAGSK---IPENVQ----WLNT-------------HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp TSGGGTTCEEEETTGGGTSBCCCTTCC---CCHHHH----GGGG-------------TTTTTCEEEEEESCGGGBCHHHH
T ss_pred hccccCceEEEEEChhhhccCccccch---hHHHHH----HHHh-------------cCcCCeEEEEECCCHHHHhHHHH
Confidence 002456899999999998765421111 112221 2211 22445678999999999999976
Q ss_pred cCCcceEEEeC
Q 018745 287 RDGRMEKFYWA 297 (351)
Q Consensus 287 R~gRfd~~i~~ 297 (351)
.|++..+.+
T Consensus 142 --~ri~~~~~l 150 (199)
T 2r2a_A 142 --TLVRKHYHI 150 (199)
T ss_dssp --TTEEEEEEE
T ss_pred --HHhheEEEE
Confidence 489988886
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=5.3e-08 Score=100.91 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..++|+||||||||+||++||..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 48999999999999999999998753
No 94
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=98.56 E-value=2.9e-08 Score=79.59 Aligned_cols=44 Identities=80% Similarity=1.125 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHhcCCCCCCccccchhhc
Q 018745 298 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKFPVPLM 341 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g~dldf~galr~ 341 (351)
.++++|..||+.+++.++++.+++.++++.|++|+||||||||+
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRs 48 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRA 48 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHH
Confidence 58899999999999999999999999999999999999999998
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.51 E-value=2.8e-07 Score=106.17 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc----C------------CCCChHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----G------------NAGEPAKLIRQRYREAA 205 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s----~------------~~Ge~~~~ir~~f~~A~ 205 (351)
+++.+.+++|+||||||||+||.+++.++ |..+..++..+..+ . .....++.++.++..+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 57888999999999999999999998775 55566666554321 0 1123445555555454
Q ss_pred HHHHhCCceEEEecccccccCC
Q 018745 206 DIIKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 206 ~~~~~~~p~IL~IDEID~l~~~ 227 (351)
+..+|++|||||++++.+.
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCH
T ss_pred ---hcCCCCEEEEcChhHhccc
Confidence 7889999999999988864
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.48 E-value=9.1e-07 Score=83.28 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=83.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc------------c---CCCCC---------------------h
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 193 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~------------s---~~~Ge---------------------~ 193 (351)
..++|+||+|+|||+|++.++++.+ .+.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999876 4444432210 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEE
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~ 273 (351)
...+.+++....+......|.+|+|||++.+..... . ....+...|..+.+ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~--------~------~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD--------S------LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH--------H------CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH--------h------cCCeEEEE
Confidence 011223333322222333499999999987754110 0 00111222333333 1 13567788
Q ss_pred EeCCCC---------CCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHH---HHHHHhcCCCC
Q 018745 274 TGNDFS---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPG 330 (351)
Q Consensus 274 TTN~~~---------~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~---~l~~l~~gf~g 330 (351)
|+.... ....++. ||+...+.+ .+.++-.+++...+...+ ++.+ .+...+.|++.
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 776432 1122222 455556665 788888888887765433 4443 34445555543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=3.9e-06 Score=78.96 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
..++|+||+|+|||+|++.++++++..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999877777776553
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.34 E-value=2.2e-06 Score=80.44 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=30.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
...+++|+.. ..++..+|+||||||||||++|.+||+.++.
T Consensus 90 ~~~l~~~l~~-~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 90 ASVFLGWATK-KFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHTT-CSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhC-CCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3445666642 1133468999999999999999999998765
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.28 E-value=2.9e-06 Score=100.47 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=87.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r 228 (351)
..+.++.||+|||||.+++++|+.+|.+++.+++++-.+ ...+...|..+ ....+.++|||++.+...
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI-----TQIGAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH-----HhcCCEeeehhhhhcChH-
Confidence 458899999999999999999999999999999885433 34455666655 223479999999864321
Q ss_pred CCCccchhhhHHHHHHHHHhh-cCCccccCCCCcccCCCCCceEEEEeC----CCCCCcchhccCCcceEEEe--CCCHH
Q 018745 229 GGTTQYTVNNQMVNATLMNIA-DNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTRE 301 (351)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~ll-d~~~~~~l~~~~~~~~~~~v~II~TTN----~~~~Ld~aLlR~gRfd~~i~--~P~~e 301 (351)
.-.+.++.+. .+.+.+ +....+.+.+. .....+...|++|.| ....|+++|.+ ||- .++ .|+.+
T Consensus 713 ----vLs~l~~~l~-~i~~al~~~~~~i~~~g~-~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~~Pd~~ 783 (2695)
T 4akg_A 713 ----VLSAVSANIQ-QIQNGLQVGKSHITLLEE-ETPLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMKSPQSG 783 (2695)
T ss_dssp ----HHHHHHHHHH-HHHHHHHHTCSEEECSSS-EEECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECCCCCHH
T ss_pred ----HHHHHHHHHH-HHHHHHHcCCcEEeeCCc-EEecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEeeCCCHH
Confidence 1111222221 112222 21111222211 112345566889998 55679999987 443 344 39999
Q ss_pred HHHHHH
Q 018745 302 DRIGVC 307 (351)
Q Consensus 302 ~R~~Il 307 (351)
...+|+
T Consensus 784 ~i~ei~ 789 (2695)
T 4akg_A 784 TIAEMI 789 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988885
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.21 E-value=8.5e-06 Score=71.90 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
+++....++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666778999999999999999999886676777766543
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.06 E-value=3e-05 Score=67.93 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
.+.|.||+|+|||+|+++++..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999986543
No 102
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.05 E-value=3.8e-06 Score=82.40 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=86.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCCceE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMCC 215 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~I 215 (351)
..++|+|++|||||++|++|..... .+|+.++++.+-.. ..-.++|... ...+.......
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~------~~~~elfg~~~g~~tga~~~~~g~~~~a~~gt 234 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD------IFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH------HHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH------HHHHHhcCCCCCCCCCcccccCCceeeCCCcE
Confidence 4579999999999999999988764 57899998765211 1112222210 00111224579
Q ss_pred EEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce---
Q 018745 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME--- 292 (351)
Q Consensus 216 L~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd--- 292 (351)
||||||+.+.. .++..|+.++++-....+++. ......+.||+|||..- ..+++.|+|.
T Consensus 235 lfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~l---~~~~~~g~fr~dl 296 (387)
T 1ny5_A 235 LFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRNI---KELVKEGKFREDL 296 (387)
T ss_dssp EEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSCH---HHHHHTTSSCHHH
T ss_pred EEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCCH---HHHHHcCCccHHH
Confidence 99999987532 234445555552211111111 11234677999999632 1234444443
Q ss_pred ------EEEeCCCHHHH----HHHHHHhhc-------C--CCCCHHHHHHHh-cCCCCC
Q 018745 293 ------KFYWAPTREDR----IGVCKGIFR-------N--DNVADDDIVKLV-DTFPGQ 331 (351)
Q Consensus 293 ------~~i~~P~~e~R----~~Il~~~~~-------~--~~~~~~~l~~l~-~gf~g~ 331 (351)
..+.+|.-.+| ..++..++. . ..++.+.+..+. -.|+|.
T Consensus 297 ~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGN 355 (387)
T 1ny5_A 297 YYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGN 355 (387)
T ss_dssp HHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTH
T ss_pred HHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcH
Confidence 34566776554 223332221 1 235666666665 444553
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.02 E-value=5.9e-06 Score=98.71 Aligned_cols=140 Identities=11% Similarity=0.196 Sum_probs=83.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh-CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH------------hCCceEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCCL 216 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~------------~~~p~IL 216 (351)
+.+||+||||||||.++......+ +..++.++.+.-. ++..+...++...+... .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998876554443 5556666665322 23444444432100000 1345799
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-----CCCCCceEEEEeCCC-----CCCcchhc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPLI 286 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-----~~~~~v~II~TTN~~-----~~Ld~aLl 286 (351)
|||||+.-.....| .|...+.|-+++|+- +++.. ....++-+|+|.|.+ ..|+++++
T Consensus 1379 FiDDiNmp~~D~yG-------tQ~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYG-------TQRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp EETTTTCCCCCTTS-------CCHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccCCCCccccc-------cccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Confidence 99999853332221 223344555555521 22221 223567899999987 46999999
Q ss_pred cCCcceEEEe-CCCHHHHHHHHHHh
Q 018745 287 RDGRMEKFYW-APTREDRIGVCKGI 310 (351)
Q Consensus 287 R~gRfd~~i~-~P~~e~R~~Il~~~ 310 (351)
| ||..... .|+.++...|+..+
T Consensus 1446 r--~F~vi~i~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1446 R--HAPILLVDFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp T--TCCEEECCCCCHHHHHHHHHHH
T ss_pred h--hceEEEeCCCCHHHHHHHHHHH
Confidence 8 6666433 39999999996544
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.97 E-value=2.4e-05 Score=69.99 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---------CCccEEeccCcccc--------CCCCC--------------
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 192 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s--------~~~Ge-------------- 192 (351)
.+++....++|+||||+|||+|+..++... +...+.++...... ...|.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 356667789999999999999999999853 33455555443100 00010
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 193 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 193 -~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
........+..+.+.+....|.+|+|||+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111122233333444567899999999987664
No 105
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.93 E-value=2.8e-05 Score=75.72 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~----~G--------e~~~~ir~~f~~A~~~~~ 209 (351)
|++....++|+||||||||+|+.+++..+ +..++.++........ .| .....+.+....+..+++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 66777899999999999999999998875 5556666654421100 00 000112233333433445
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 67899999999988765
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.92 E-value=2.8e-05 Score=89.81 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=59.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~----~G--------e~~~~ir~~f~~A~~~~~ 209 (351)
++++...++|+|+||+|||+||..+|..+ +.++++++..+..... .| .++..+.+++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 57777899999999999999999999877 3457777776543321 11 112235556666655555
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...|++||||.|+.+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 67899999999999876
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.92 E-value=1.3e-05 Score=78.20 Aligned_cols=158 Identities=15% Similarity=0.244 Sum_probs=87.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCc--cEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCceEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMCCL 216 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~--~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~IL 216 (351)
..+|++|++||||+.+|++|....+.. |+.++++.+-... ...++|.... ..+.......|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 359999999999999999999887544 8999988663221 1122332100 00112244689
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceE---
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--- 293 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~--- 293 (351)
|||||+.+.. .++..|+.++++-....+.+. ......+.+|++||.. + ..++..|+|..
T Consensus 227 fldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 227 FLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFREDLY 288 (368)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHHHH
T ss_pred EecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHHHH
Confidence 9999987532 234455555552211111111 1113456799999953 2 22444555543
Q ss_pred ------EEeCCCHHHH-HHH---HHHhhc-------C--CCCCHHHHHHHhc-CCCCC
Q 018745 294 ------FYWAPTREDR-IGV---CKGIFR-------N--DNVADDDIVKLVD-TFPGQ 331 (351)
Q Consensus 294 ------~i~~P~~e~R-~~I---l~~~~~-------~--~~~~~~~l~~l~~-gf~g~ 331 (351)
.+.+|.-.+| .+| ++.++. . ..++.+.+..+.. .|+|.
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGN 346 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGN 346 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTH
T ss_pred HHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcH
Confidence 4667766554 233 333321 1 2466777766653 45554
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.89 E-value=1.5e-05 Score=68.17 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
|..|+|.|+||+|||++++++++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4679999999999999999999999988776543
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=7.4e-05 Score=65.97 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
+++....++|.||+|+|||+|++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666789999999999999999998654 44554443
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.80 E-value=0.00012 Score=87.74 Aligned_cols=139 Identities=18% Similarity=0.127 Sum_probs=85.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~ 229 (351)
.|..+.||+|||||.+++.+|+.+|.+++.+++++-. ....+.+.|.-+ . ...+-.++||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~----~-~~GaW~cfDEfNrl~~~-- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGL----C-QCGAWGCFDEFNRLEER-- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHH----H-HHTCEEEEETTTSSCHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhH----h-hcCcEEEehhhhcCCHH--
Confidence 4677999999999999999999999999999987543 234455555544 1 23457789999764321
Q ss_pred CCccchhhhHHHHHHHHHhhcCCccccCC-CCcccCCCCCceEEEEeC----CCCCCcchhccCCcceEEEe-CCCHHHH
Q 018745 230 GTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 303 (351)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~~~l~-~~~~~~~~~~v~II~TTN----~~~~Ld~aLlR~gRfd~~i~-~P~~e~R 303 (351)
.-.+..+.+......+.+......+. + ......+..-|++|.| ....|+.+|....| -... .|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G-~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr--~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGG-KNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR--SMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE--EEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCC-CEEeecCCeEEEEEeCCCccCcccChHHHHhhcE--EEEEeCCCHHHH
Confidence 11222222221112223333333333 2 1123356677899998 35689999987444 3222 4999988
Q ss_pred HHHH
Q 018745 304 IGVC 307 (351)
Q Consensus 304 ~~Il 307 (351)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 111
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=0.00016 Score=70.54 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC----CCCh--------HHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~----~Ge~--------~~~ir~~f~~A~~~~~ 209 (351)
|++....++|+||||+|||+||..+|..+ +..++.++...-.+.. .|.. ...+.++...+..+++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 66677889999999999999999888764 5566666654321110 0100 0012233333333345
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 67899999999998875
No 112
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.75 E-value=2.4e-05 Score=67.59 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
++.|..|+|.|+||+|||++++.+++.+++.++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4567899999999999999999999999987654
No 113
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.75 E-value=6e-05 Score=67.52 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=48.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc---------cccCC-----------CCC------hHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE---------LESGN-----------AGE------PAKLIRQR 200 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~---------l~s~~-----------~Ge------~~~~ir~~ 200 (351)
.-|++|+++|.|||++|-.+|-.+ |..+..+..-. +...+ .-. .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 368899999999999999987765 77777773221 11111 101 12345556
Q ss_pred HHHHHHHHHhCCceEEEecccc
Q 018745 201 YREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID 222 (351)
+..+.+.+......+|+|||+-
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCC
Confidence 6666555556789999999984
No 114
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.75 E-value=0.00012 Score=67.00 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhh-CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 131 KLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 131 ~~~~~i~k~~l~-~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
.+...+.+.++. ....+.|..++|.||||+|||++++.++..++...+.++...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 444445555443 2355678899999999999999999999999876677777665
No 115
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.73 E-value=5.1e-05 Score=71.35 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHHHhhhC-CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc
Q 018745 125 APAFMDKLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (351)
Q Consensus 125 ~~~~~d~~~~~i~k~~l~~-~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~ 186 (351)
.+.-..++...+...++.. .....|..++|.||||+|||++|+.+++++....+.++...+.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3444445666677777642 3345678999999999999999999999985556677764443
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.72 E-value=2.1e-05 Score=67.87 Aligned_cols=33 Identities=12% Similarity=-0.124 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
+..|+|.||||||||++++.+|+.++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999999887553
No 117
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.72 E-value=6.4e-06 Score=83.08 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=67.1
Q ss_pred EEEEEcCCCccHHHHHHHH-HHHhCCccEEeccC-----ccccCCCCChHHHHHHHHH-HHHHHHHhCCceEEEeccccc
Q 018745 151 ILGIWGGKGQGKSFQCELV-FAKMGINPIMMSAG-----ELESGNAGEPAKLIRQRYR-EAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aI-A~~lg~~~i~vs~s-----~l~s~~~Ge~~~~ir~~f~-~A~~~~~~~~p~IL~IDEID~ 223 (351)
.|||.|+||| ||.+|+++ ++-+... +.++.. .+.....+.+ . |. ++ ..+....-.++|||||+.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~~t-----G-~~~~~-G~l~LAdgGvl~lDEIn~ 311 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKEDR-----G-WALRA-GAAVLADGGILAVDHLEG 311 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEESS-----S-EEEEE-CHHHHTTTSEEEEECCTT
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEcCC-----C-cccCC-CeeEEcCCCeeehHhhhh
Confidence 6999999999 99999999 5544222 222110 0000000000 0 00 00 000122457999999986
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----------CCcchhccCCcce
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIRDGRME 292 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----------~Ld~aLlR~gRfd 292 (351)
+.. .....|++.+++.+ +.+.+. ....+..||+|+|..+ .|+++++- |||
T Consensus 312 ~~~-------------~~qsaLlEaMEe~~-VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFD 372 (506)
T 3f8t_A 312 APE-------------PHRWALMEAMDKGT-VTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFD 372 (506)
T ss_dssp CCH-------------HHHHHHHHHHHHSE-EEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCS
T ss_pred CCH-------------HHHHHHHHHHhCCc-EEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--hee
Confidence 432 22345555555221 223322 3356778999999865 78889984 999
Q ss_pred EEEeC---CCHHH
Q 018745 293 KFYWA---PTRED 302 (351)
Q Consensus 293 ~~i~~---P~~e~ 302 (351)
..+.+ |+.++
T Consensus 373 Li~i~~d~pd~e~ 385 (506)
T 3f8t_A 373 LIAFLGVDPRPGE 385 (506)
T ss_dssp EEEETTC------
T ss_pred eEEEecCCCChhH
Confidence 98875 65544
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=4.4e-05 Score=72.82 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---------CCccEEeccCcccc--------CCCCC--------------
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 192 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s--------~~~Ge-------------- 192 (351)
.+++....++|+||||+|||+||..+|..+ +..+++++...-.. ...|.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 366767889999999999999999999875 44566666543210 00010
Q ss_pred -hHHHHHHHHHHHHHHHHh-CCceEEEecccccccC
Q 018745 193 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 226 (351)
Q Consensus 193 -~~~~ir~~f~~A~~~~~~-~~p~IL~IDEID~l~~ 226 (351)
+...+.+++..+...++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011112233444444556 7899999999988753
No 119
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.67 E-value=0.00031 Score=66.83 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCc-cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GIN-PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~-~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+.+...|||||+|.||+..++.+++.+ +.. +..+. + + ++ ..++++...+...--.+...|++|||.+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I-D---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C-C---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e-c---CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456699999999999999999998876 332 11121 1 1 11 2245555555322235667899999997
Q ss_pred c-ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC------CCCcchhccCCcceEEE
Q 018745 223 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 295 (351)
Q Consensus 223 ~-l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~------~~Ld~aLlR~gRfd~~i 295 (351)
. +... ....|...+++ ..+.+.+|++|+.+ ..+.+++..++. -..+
T Consensus 87 ~kl~~~-------------~~~aLl~~le~-------------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~ 139 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTGL-------------LHDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTC 139 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHTT-------------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEE
T ss_pred CCCChH-------------HHHHHHHHHhc-------------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEe
Confidence 6 3211 22345556662 23455666666653 346677765443 2223
Q ss_pred eCCCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCCCC
Q 018745 296 WAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (351)
Q Consensus 296 ~~P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~g 330 (351)
.-|+.++..+.++..++..+ ++.+.+..+++...|
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 34788888888887776665 445555555544433
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.65 E-value=0.00015 Score=65.01 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA 170 (351)
+++....++|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56666789999999999999999998
No 121
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.65 E-value=8.4e-05 Score=84.91 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc----CCCCC--------hHHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s----~~~Ge--------~~~~ir~~f~~A~~~~~ 209 (351)
|+++...++|+||||+|||+||..+|.++ +..++.++..+... ...|. .+..+.+++..+..+++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 57777899999999999999999998765 44667766554321 11110 01123445555544555
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...|.+|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999874
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.65 E-value=0.00012 Score=70.90 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---------CccEEeccCccc---------cCC------------CC--
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELE---------SGN------------AG-- 191 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg---------~~~i~vs~s~l~---------s~~------------~G-- 191 (351)
.+++....++|+||||+|||+|++.++.... -.++.++..... ... ..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 3566668899999999999999999998862 234555543321 000 00
Q ss_pred ChHHHHHHHHHHHHHHHHh-----CCceEEEeccccccc
Q 018745 192 EPAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA 225 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~-----~~p~IL~IDEID~l~ 225 (351)
.......+++..+...+.. .+|.+|+|||+-++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 0011223344444444555 689999999997665
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.65 E-value=7e-05 Score=72.13 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---------CCccEEeccCccccC--------CCCC-h------------
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-P------------ 193 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s~--------~~Ge-~------------ 193 (351)
.+++....++|+||||+|||+||..+|... +..+++++.....+. ..|. .
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 366767889999999999999999999873 345556655432100 0000 0
Q ss_pred --HHHHHHHHHHHHHHHHh--CCceEEEecccccccC
Q 018745 194 --AKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG 226 (351)
Q Consensus 194 --~~~ir~~f~~A~~~~~~--~~p~IL~IDEID~l~~ 226 (351)
...+.++...+...+.. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111223333344455 7899999999988763
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.64 E-value=3.7e-05 Score=74.51 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC----CCCCh--------HHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~f~~A~~~~~ 209 (351)
+++....++|+||||+|||+||..++..+ +..++.++...-.+. ..|.. ...+.+.+..+..+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 66667889999999999999999988654 555666655432110 01100 0012233333433445
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...|.+|+||++.++..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 67899999999998874
No 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.63 E-value=0.00012 Score=67.45 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH---hCCccEEeccCccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE 186 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~---lg~~~i~vs~s~l~ 186 (351)
.+..|+|.|+||+|||++|+.++.. .|+.++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3568999999999999999999998 68887756554443
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=8.6e-05 Score=65.73 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++....+.|.||+|+|||+|+++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666789999999999999999999854
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.62 E-value=0.00028 Score=62.96 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
+++....++|+||||+|||+|+..+|... +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 55666789999999999999998876643 455555443
No 128
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.61 E-value=4e-05 Score=65.97 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+..+..|+|+|+||+|||++++.+++.++..++.+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34456799999999999999999999999876644
No 129
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=4e-05 Score=67.43 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
++....|+|.||||||||++++++|+.+++.++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 344568999999999999999999999999877543
No 130
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.60 E-value=4.9e-05 Score=69.00 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
...+.|+.|+|.||||+||+++|+.+|+++|+..+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 46678899999999999999999999999987644
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.59 E-value=0.00013 Score=72.04 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC---------CccEEeccCcccc--------CCCCC---------------
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE--------------- 192 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg---------~~~i~vs~s~l~s--------~~~Ge--------------- 192 (351)
|++.-..++|+||||||||+|++.+|...- ...++++...... ...|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 566667899999999999999998775432 2355555443110 00010
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
......+....+.+.+....|.+|+||++-.+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 0111222333444445567899999999977654
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=5.1e-05 Score=64.59 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
+..|+|.||+|||||++++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999976553
No 133
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.53 E-value=6.7e-05 Score=65.80 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
...|..|+|.|+||||||++|+.+++++++.++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34567899999999999999999999999886654
No 134
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=0.00011 Score=70.71 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcccc----CCCCCh--------HHHHHHH-HHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----GNAGEP--------AKLIRQR-YREAAD 206 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s----~~~Ge~--------~~~ir~~-f~~A~~ 206 (351)
|++.. .++|+||||+|||+||..++.++ +..++.++..+-.. ...|.. +....+. +..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45544 68999999999999988776554 45566666543211 001100 0112222 222222
Q ss_pred H--HHhCCceEEEecccccccCC
Q 018745 207 I--IKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 207 ~--~~~~~p~IL~IDEID~l~~~ 227 (351)
+ ++..+|.+|+||-|.++.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 2 35678999999999998753
No 135
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.52 E-value=5.5e-05 Score=65.15 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
|..|+|.|+||||||++|+.+++++++.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999987654
No 136
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.52 E-value=5e-05 Score=65.50 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+|.|+||||||++|+.+++.+|++++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999877543
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.50 E-value=7.6e-05 Score=63.01 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=27.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+|.||||||||++++.+++.++++++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876443
No 138
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.00039 Score=62.08 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH----hCCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~----lg~~~i~vs~ 182 (351)
|+++...++|+|+||+|||.+|..+|.+ .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666778999999999999999876543 2566666553
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.48 E-value=0.0016 Score=66.30 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
..++.+.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999997
No 140
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.48 E-value=0.00086 Score=68.21 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
.++.++|+||+|+|||+||..+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.47 E-value=7e-05 Score=64.79 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.+..|+|.|+||||||++|+.+++.+++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999999876644
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.46 E-value=8.9e-05 Score=63.68 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|..|+|.|+||||||++|+.+++.+++.++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 467899999999999999999999999776644
No 143
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.45 E-value=8e-05 Score=63.32 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..|+|.|+||||||++++.+|+++|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999987754
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.45 E-value=5.8e-05 Score=64.24 Aligned_cols=30 Identities=30% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH-HhCCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA-KMGINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~-~lg~~~i 178 (351)
|..|+|.|+||+|||++|+.+++ .+++.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 67899999999999999999998 4554433
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=7.4e-05 Score=64.94 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH-hCCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK-MGINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~-lg~~~i~v 180 (351)
+..|+|.|+||||||++++.+++. +|++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 78776643
No 146
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.00015 Score=70.41 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=52.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC----CCCh-H-------HHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP-A-------KLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~----~Ge~-~-------~~ir~~f~~A~~~~~ 209 (351)
|++....++|+||||+|||+||..+|..+ +..++.++...-.+.. .|.. . ....++...+..+++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777899999999999999999988764 5667777664321100 0000 0 001222223323335
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 67899999999988874
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.44 E-value=7.9e-05 Score=64.15 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
+..|+|.|+||||||++++.+++.+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4579999999999999999999999876553
No 148
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.43 E-value=9e-05 Score=66.01 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.+..|+|.|+||||||++|+.+|+.+++.++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456899999999999999999999999876654
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.43 E-value=0.00065 Score=67.66 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~ 182 (351)
|+++...++|.|+||+|||+|+..+|..+ |.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 66666789999999999999999988754 556666553
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=9.4e-05 Score=63.41 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.||||||||++++.+|+.++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 488999999999999999999999876643
No 151
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.41 E-value=0.00011 Score=64.59 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+..|+|.|++|+|||++|+.+++.+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56899999999999999999999998776643
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=8.9e-05 Score=62.23 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=26.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.||||||||++|+.+ +.+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 6889999999999999999 8889887654
No 153
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.40 E-value=9e-05 Score=64.27 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|..|+|.|+||||||++|+.+++++++.++.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356899999999999999999999999766543
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.39 E-value=8.3e-05 Score=64.26 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
.++.+..++|.||||+|||+++++++...+...+.++...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3556678999999999999999999988766666666544
No 155
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.38 E-value=7.8e-05 Score=63.89 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
|..|+|.|+||||||++|+.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 568999999999999999999999998866
No 156
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.37 E-value=0.00011 Score=64.31 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+.+..|+|.|+||||||++++.+++++|+.++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3457899999999999999999999999866544
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.37 E-value=9.1e-05 Score=66.40 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..+..|+|.|+||||||++|+.+++++++.++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4467899999999999999999999999876644
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.35 E-value=0.00019 Score=67.94 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++....++|+||||+|||+||..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 66667889999999999999999998763
No 159
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.34 E-value=9.9e-05 Score=63.40 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+..|+|.|+||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 160
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.33 E-value=0.00013 Score=66.53 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+.|..|+|.||||+|||++|+.+++++++..+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998876644
No 161
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.32 E-value=0.0018 Score=70.68 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..++.+.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998865
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.32 E-value=0.00012 Score=62.11 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=27.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.|+||||||++|+.+++.++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999876643
No 163
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.31 E-value=0.00014 Score=63.89 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEe
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~v 180 (351)
..++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999996666543 5555544
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.30 E-value=0.00017 Score=66.26 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
.++|.||||||||++|+.+|++++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58999999999999999999999988776654
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.29 E-value=0.0002 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|..+.|.||+|+|||++++++++++|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36789999999999999999999999886553
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.28 E-value=0.0016 Score=64.70 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEecc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~ 182 (351)
.|+++...++|.|+||+|||++|..+|... |.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 467777789999999999999999887754 456666544
No 167
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.28 E-value=0.00018 Score=64.85 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.+..|+|.|+||||||++|+.+|+++++.++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999876654
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.27 E-value=0.00015 Score=64.23 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
-|+|.||||+|||++|+.+++++++.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999877655
No 169
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00016 Score=63.94 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.||||+|||++|+.+++++++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
No 170
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.25 E-value=0.00017 Score=60.90 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=26.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.|+||||||++|+.+++.++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887653
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.24 E-value=0.00023 Score=62.49 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
+.+..++|.||+|+|||+++++++..+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 34568999999999999999999999976544
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.24 E-value=0.00024 Score=63.05 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
+..|.|.||+|||||++++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999976553
No 173
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00034 Score=63.65 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=43.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCce
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~-------l~s~~~Ge~-----~~~ir~~f~~A~~~~~~~~p~ 214 (351)
..++++||+|+|||+++..++..+ |..++.+.... +.+.. |.. .....+++..+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 578889999999999999887765 55666663322 22221 210 011223444442112234688
Q ss_pred EEEeccccc
Q 018745 215 CLMINDLDA 223 (351)
Q Consensus 215 IL~IDEID~ 223 (351)
+|+|||+..
T Consensus 92 vViIDEaQ~ 100 (223)
T 2b8t_A 92 VIGIDEVQF 100 (223)
T ss_dssp EEEECSGGG
T ss_pred EEEEecCcc
Confidence 999999964
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.00027 Score=60.29 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
...++|.||+|+|||+++++++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4579999999999999999999998865543
No 175
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.21 E-value=0.00021 Score=64.14 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|+|.||||+||+++|+.+|+++|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47889999999999999999999987553
No 176
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.20 E-value=0.00019 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=27.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..|+|.|+||||||++|+.+|+.+++.++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 177
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=0.00017 Score=64.24 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|..|+|.||||+|||++++.+|++++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 35679999999999999999999999975543
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.19 E-value=0.00034 Score=60.09 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
+.+..|.|.|++|||||++++.++..+ |++++.++...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 345678999999999999999999998 88888776543
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.18 E-value=0.00024 Score=61.93 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh-CCccEEec
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 181 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs 181 (351)
.+..|.|.|++|||||++++.+++.+ |++++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45689999999999999999999998 57776654
No 180
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.18 E-value=0.00021 Score=69.60 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
..++|+||||+|||++++++|+.++++++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468999999999999999999999887744
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=0.0011 Score=64.23 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=40.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC----CccEEecc-Ccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG----INPIMMSA-GELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg----~~~i~vs~-s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 215 (351)
..++|.||+|||||++.++++..+. ..++.+.. .++.. ...+.....+.+....| -...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCE
Confidence 4699999999999999999988762 33332221 11110 00111111122333333 4789999
Q ss_pred EEeccc
Q 018745 216 LMINDL 221 (351)
Q Consensus 216 L~IDEI 221 (351)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999998
No 182
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.15 E-value=0.0015 Score=62.78 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
.+..|+|.||+|||||++++.+|++++..++.++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 35689999999999999999999999988777654
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.12 E-value=0.0004 Score=59.64 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.|+|.|++|||||++++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999999998 88877664
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.0012 Score=57.98 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
+.+..+.|.||+|||||+++++++..+ |...+.+....+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999998 554334444333
No 185
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.08 E-value=0.00031 Score=62.31 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
-|+|.|+||+|||++|+.+++.+++.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877665
No 186
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.08 E-value=0.0027 Score=60.32 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
+.|..++|.||+|+|||+++..+|..+ +..+..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 457889999999999999999999876 444554443
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.08 E-value=0.0042 Score=58.83 Aligned_cols=38 Identities=16% Similarity=-0.110 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.|+++...++|.|+||+|||+||..+|... +.+++.++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467777789999999999999999998665 34555554
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.07 E-value=0.0002 Score=62.75 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
+.+..|+|.|+||||||++++.+++.++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 456789999999999999999999987654
No 189
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.05 E-value=0.00042 Score=63.48 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|..+.|.||+|||||++++.+++.+++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46789999999999999999999999976553
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00047 Score=59.56 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.|.|.|++|||||++++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999999 98887654
No 191
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.02 E-value=0.00057 Score=59.52 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|.|.|++|||||++++.+|+.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999999877654
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.02 E-value=0.00041 Score=60.13 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
.|.|.|++|||||++++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998654
No 193
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00039 Score=60.34 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|..|.|.|++|||||++++.+++. |+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 4678999999999999999999998 877654
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00025 Score=62.14 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
+.|..|+|.|+||||||++++.+++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999998743
No 195
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00047 Score=60.06 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
+..|+|.|+||+|||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4679999999999999999999998774
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.00 E-value=0.0019 Score=64.48 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc-------------------c-CCCCChHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-------------------S-GNAGEPAKLIRQRYREA 204 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~-------------------s-~~~Ge~~~~ir~~f~~A 204 (351)
.|..|++.|++|+|||+++..+|..+ |..+..+.+.... . .....+...+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999876 6666666654321 1 11123444455555555
Q ss_pred HHHHHhCCceEEEeccc
Q 018745 205 ADIIKKGKMCCLMINDL 221 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEI 221 (351)
+...+.++|||..
T Consensus 179 ----~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 ----KSKGVDIIIVDTA 191 (443)
T ss_dssp ----HHTTCSEEEEECC
T ss_pred ----HhCCCCEEEEECC
Confidence 5566889999976
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.99 E-value=0.00029 Score=60.37 Aligned_cols=24 Identities=29% Similarity=0.098 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.|+|.|+||||||++++.++++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886
No 198
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.98 E-value=0.00043 Score=60.73 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
..+.|.||+|||||++++.++. +|..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4689999999999999999988 8877654
No 199
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.98 E-value=0.00048 Score=61.76 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.|+||+|||++++.+++.+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 488999999999999999999999765544
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.97 E-value=0.00041 Score=60.65 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|.|.|++|||||++++.++. +|+.++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766543
No 201
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.0006 Score=60.40 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|..|.|.|++|||||++++.++. +|++++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 467899999999999999999988 88765543
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.93 E-value=0.00042 Score=60.94 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh-CCccEE
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIM 179 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~ 179 (351)
.++.+..+.|.|++|+|||++++.++..+ ++.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 45667789999999999999999999877 555443
No 203
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.93 E-value=0.0024 Score=57.90 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s 183 (351)
.++|.||+|+|||.++.+++.+++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887776666544
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.002 Score=56.85 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC----CccEEeccCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 185 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg----~~~i~vs~s~l 185 (351)
+.+..|+|.|++|+|||++++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999998764 55666664433
No 205
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.0014 Score=57.65 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.+.+..+.|.||+|+|||++++.++..+ +..++...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 4556789999999999999999999876 55555543
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.89 E-value=0.00067 Score=61.87 Aligned_cols=31 Identities=32% Similarity=0.660 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
..|..|.|.|++|||||++|+.+++.+++++
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 4567899999999999999999999999763
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.87 E-value=0.0046 Score=61.62 Aligned_cols=38 Identities=16% Similarity=-0.094 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
|+.+...++|.|+||+|||++|..+|... |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 66666789999999999999999888765 566666554
No 208
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.85 E-value=0.0036 Score=62.95 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~ 182 (351)
|+.+...++|.|+||+|||+||..+|..+ |.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 55566789999999999999999998775 445665554
No 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.82 E-value=0.0023 Score=61.84 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
.++.|+|.||+|+|||+|+..+|++++..++..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 45689999999999999999999999877766544
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.80 E-value=0.0012 Score=61.07 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...++|.||+|+|||++.++++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445679999999999999999999865
No 211
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00078 Score=59.62 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=27.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..|.|.|++|||||++++.+++.+|++++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 5789999999999999999999989877654
No 212
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.79 E-value=0.00091 Score=61.23 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
...|.|.||+|||||++++.+|+++|+.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 357999999999999999999999998755
No 213
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.79 E-value=0.0013 Score=60.10 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
..|++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999999999999888775 666655444
No 214
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.76 E-value=0.0009 Score=59.10 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
|..|.|.|++|||||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45799999999999999999999999876643
No 215
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.76 E-value=0.0012 Score=59.58 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
+.+..|.|.|++|||||++++.++..+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 445689999999999999999999999987653
No 216
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.75 E-value=0.0033 Score=62.79 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=64.8
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe----CCCCCCcchhcc
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIR 287 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT----N~~~~Ld~aLlR 287 (351)
...+|++||||+++.+.+ +....+...-++..|+.++++.+.... +......++.+|||+ +.+..+-|+|+
T Consensus 250 ~~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~~---~~~~d~~~ilfI~~gaf~~~~~~dlipel~- 324 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVSTK---HGMVKTDHILFIASGAFQVARPSDLIPELQ- 324 (444)
T ss_dssp HHCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEET---TEEEECTTCEEEEEECCSSCCGGGSCHHHH-
T ss_pred cCCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhcccccccc---cceecCCcEEEEeccccccCChhhcchHHh-
Confidence 346999999999987643 233556666788899999995433221 223457789999998 23444557777
Q ss_pred CCcceEEEeC--CCHHHHHHHH
Q 018745 288 DGRMEKFYWA--PTREDRIGVC 307 (351)
Q Consensus 288 ~gRfd~~i~~--P~~e~R~~Il 307 (351)
|||+..+.+ .+.++..+|+
T Consensus 325 -~R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 325 -GRLPIRVELTALSAADFERIL 345 (444)
T ss_dssp -TTCCEEEECCCCCHHHHHHHH
T ss_pred -cccceeeeCCCCCHHHHHHHH
Confidence 799998887 8899999997
No 217
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.00084 Score=62.37 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh-CCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l-g~~~i 178 (351)
|..|+|.|+||+|||++|+.+++++ ++.++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 65544
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.0029 Score=63.07 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.|..+++.||+|+|||+++..+|..+ |..+..+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47899999999999999999998766 6666665543
No 219
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.71 E-value=0.00092 Score=62.38 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|..|+|.|++|||||++|+.++ ++|++++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 46789999999999999999999 678766543
No 220
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.71 E-value=0.001 Score=65.67 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|..|+|.|+||+|||++|+.+++.+++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 34678999999999999999999999876543
No 221
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.71 E-value=0.0017 Score=57.36 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.+.+..+.|.||+|+|||+|+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999874
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00097 Score=61.56 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=28.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
..|.|.|++|||||++++.+|..+|+.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999877543
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.00097 Score=58.65 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+..+..++|.||||+|||++++.++..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34566899999999999999999999874
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.68 E-value=0.0011 Score=57.64 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.+..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456689999999999999999999876
No 225
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.67 E-value=0.0015 Score=62.52 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
+.|..++|.||+|+|||+||..+|+.++..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 456789999999999999999999999877666543
No 226
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.66 E-value=0.001 Score=58.41 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC--CccEE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~ 179 (351)
+.+..+.|.||+|+|||+|++.++..++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4566899999999999999999999887 54443
No 227
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.62 E-value=0.0021 Score=65.37 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
..|..|+|.|.||+|||++|+.+|+++++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 346789999999999999999999998443
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.0015 Score=56.38 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC---CccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~ 182 (351)
..+..|+|.|+||+|||++++.++..++ ..+..++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3467899999999999999999999874 44444543
No 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.55 E-value=0.018 Score=63.38 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.+.|+||+|+|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.55 E-value=0.0016 Score=56.65 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|+|||+|+++++...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999885
No 231
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.54 E-value=0.0032 Score=60.25 Aligned_cols=38 Identities=37% Similarity=0.540 Sum_probs=30.9
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
...++.....+.|..+.|.||+|||||+++++++..+.
T Consensus 80 ~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 80 TYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444444567788999999999999999999998875
No 232
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.54 E-value=0.0022 Score=62.46 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....++|.||+|+|||++.++++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445679999999999999999999865
No 233
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.50 E-value=0.028 Score=57.79 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-------CCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l-------g~~~i~vs~s 183 (351)
.+|+.|.+|+|||.+++.+...+ .+.++.++..
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 68999999999999999877655 2356777655
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.47 E-value=0.002 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..++|.||+|+|||++++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 36889999999999999999986643
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.46 E-value=0.0068 Score=58.42 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
|+.+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666789999999999999999988764 556555543
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.45 E-value=0.0019 Score=62.46 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
+..|+|.||+|+|||++|+.+|..++..++.++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 458999999999999999999999986655543
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0016 Score=57.68 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+.+..+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999998874
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0021 Score=55.50 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
...+.|.||+|+|||+|+++++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999998753
No 239
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.39 E-value=0.0033 Score=59.34 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=29.4
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.+.++.....+.+..+.|.||+|+|||+|+++++..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444443445667899999999999999999999876
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.37 E-value=0.0018 Score=56.08 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
|+.+.|.||+|+|||+|+++++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998763
No 241
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.34 E-value=0.0027 Score=56.35 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
..|.|.||+|||||++++.+|+++|++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 479999999999999999999999999873
No 242
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.34 E-value=0.0025 Score=58.33 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
-+.|.||||+|||++|+.+++.+++..+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477889999999999999999999886643
No 243
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.31 E-value=0.0027 Score=57.51 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
.++.+..+.|.||.|+|||++++.++..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34556789999999999999999999988754
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0059 Score=57.42 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..+.|..|.|.||+|||||+|++.++..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445678999999999999999999998875
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.22 E-value=0.003 Score=60.51 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
+..|+|.||+|+|||+|+..+|+.++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 457889999999999999999999886655443
No 246
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.19 E-value=0.027 Score=53.84 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.|..+.|.||+|+|||++++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 247
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.18 E-value=0.012 Score=59.56 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
..|..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999999766 666666665
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0028 Score=55.73 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+++.+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999998763
No 249
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.13 E-value=0.0023 Score=48.09 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 297 APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 297 ~P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+|+.++|.+|++.+++. ..++.+.+++.++||+|+||.-
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 59999999999999876 3677999999999999999864
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.11 E-value=0.0048 Score=59.01 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=41.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC--ccEEeccCc-cc-c---C---CCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LE-S---G---NAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs~s~-l~-s---~---~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~ID 219 (351)
..++|.||+|+|||+|.++++..... ..+.+.... +. . . +........+.....| -..+|.+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEEc
Confidence 46999999999999999999987632 234443321 11 0 0 1100111223334444 46789999999
Q ss_pred ccc
Q 018745 220 DLD 222 (351)
Q Consensus 220 EID 222 (351)
|.-
T Consensus 248 E~~ 250 (330)
T 2pt7_A 248 ELR 250 (330)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 251
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.11 E-value=0.0081 Score=62.52 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
.+..|+|.|+||+|||++|+++++.+ |++++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46789999999999999999999999 999888865443
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.09 E-value=0.0047 Score=55.84 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC--CccEE
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~ 179 (351)
.+.+..|.|.||+|+|||++++.+++.++ ..++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 44567899999999999999999999986 44443
No 253
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.05 E-value=0.002 Score=49.74 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcccc
Q 018745 297 APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 297 ~P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
.|+.++|.+|++.++++ ..++++.|++.++||+|+||.-.
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l 53 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGV 53 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 39999999999999876 36789999999999999999744
No 254
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.02 E-value=0.005 Score=60.82 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+..|+|.||+|+|||+|+..+|+.++..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 45789999999999999999999998766554
No 255
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.02 E-value=0.027 Score=53.61 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
.+.+..+++.||+|+|||+++..+|..+ +..+..+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3567899999999999999999998765 555555543
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.01 E-value=0.0044 Score=54.58 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.++....+.|.||+|+|||+|+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345556799999999999999999998873
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.94 E-value=0.065 Score=54.22 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.++.+..++|.||+|+|||+|+++||..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567789999999999999999999876
No 258
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.93 E-value=0.0051 Score=55.70 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
...|.|.|++|||||++++.+|+++|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4589999999999999999999999998763
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.93 E-value=0.0027 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.|.|.|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 260
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.90 E-value=0.0044 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||+|+|||+|+++++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4445678999999999999999999876
No 261
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.90 E-value=0.033 Score=60.38 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
....++|.||.|+|||++.++++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345799999999999999999874
No 262
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.89 E-value=0.045 Score=59.48 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
..++|.||.|+|||++.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 263
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.89 E-value=0.0029 Score=59.46 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCcc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l 185 (351)
.+..|.|.||+|+|||++|+.+++.++ ..+..++...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 355799999999999999999999876 43444554433
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.89 E-value=0.028 Score=55.86 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~ 184 (351)
+.|+.|++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 457899999999999999999998765 66777776653
No 265
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.88 E-value=0.0033 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCEL 168 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~a 168 (351)
+....++|.||+|||||+|+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456799999999999999994
No 266
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.87 E-value=0.0046 Score=55.15 Aligned_cols=35 Identities=20% Similarity=-0.015 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccHH-HHHHHHHHHh--CCccEEeccC
Q 018745 149 PLILGIWGGKGQGKS-FQCELVFAKM--GINPIMMSAG 183 (351)
Q Consensus 149 p~glLL~GppGtGKT-~LA~aIA~~l--g~~~i~vs~s 183 (351)
-...++|||.|+||| .|.+++.++. +..++.+++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 468999999999999 9999987754 6677777643
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.86 E-value=0.0071 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg 174 (351)
-|+|.||+|+|||+|++.+.++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999988764
No 268
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.85 E-value=0.053 Score=54.80 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELV 169 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aI 169 (351)
+++....++|.||+|||||+|++++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 5566678999999999999999994
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.84 E-value=0.007 Score=51.79 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.++....+.|.||.|+|||+|+++++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34455679999999999999999999987
No 270
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.81 E-value=0.0063 Score=57.79 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.+.+..+.|.||+|+|||+|+++|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56678999999999999999999998763
No 271
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.80 E-value=0.0045 Score=57.07 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++....++|+||+|+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55556789999999999999999998654
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.78 E-value=0.025 Score=53.24 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
+..+++.|++|+|||+++..+|..+ +..+..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6789999999999999999998776 5566655543
No 273
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.75 E-value=0.03 Score=52.54 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.+..+.+.|++|+|||+++..+|..+ +..+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46788899999999999999998765 44454443
No 274
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.72 E-value=0.051 Score=57.78 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..++|.||.|+|||++.++++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46899999999999999999864
No 275
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.72 E-value=0.028 Score=55.48 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
-.-++|.||+|||||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3578999999999999999998864
No 276
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.71 E-value=0.0065 Score=56.33 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+++....++|.||||+|||+|++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666789999999999999999998765
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.71 E-value=0.0045 Score=55.56 Aligned_cols=31 Identities=26% Similarity=0.094 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.++++|.||+|+|||+||..+++... .++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 46899999999999999999998865 44433
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.69 E-value=0.016 Score=58.29 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58899999999999999887654
No 279
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.67 E-value=0.0081 Score=61.06 Aligned_cols=53 Identities=11% Similarity=-0.077 Sum_probs=38.9
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 122 LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 122 ~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..+|+.|+-.-+..+.+.++.. ..+.+..|.|.|.+|||||++++++|+.++.
T Consensus 369 ~~~P~~f~rpeV~~vLr~~~~~-~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEVVKILRESNPP-RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCC-GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhhHHHHHHhccc-ccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3456666666566666665521 1244568999999999999999999999985
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.66 E-value=0.0071 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++.+.|.||+|+|||+|+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998764
No 281
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.65 E-value=0.0083 Score=62.27 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
..||+||||||||+.+-.+..++ +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 57899999999998655544333 5555555443
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.64 E-value=0.042 Score=61.75 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+++..-+.|.||+|||||+|++++...+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 44556899999999999999999988764
No 283
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.63 E-value=0.024 Score=57.99 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCcc
Q 018745 124 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (351)
Q Consensus 124 i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l 185 (351)
+|+.|+-.-+..+.+.++.. ..+.+..|+|.|++|+|||++|+.+++.++ .++..++...+
T Consensus 348 ~p~~~~r~eV~~~lr~~~~~-~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 348 LPEWFTRPEVAEILAETYVP-KHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCTTTSCHHHHHHHHHHSCC-GGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CCccccchhHHHHHHHhhcc-ccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 34445433344555554421 224467899999999999999999999874 45566655433
No 284
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.63 E-value=0.017 Score=54.47 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++.+..++|.||+|+|||++++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566789999999999999999999876
No 285
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0079 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
|..|.|.|++|+|||++++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999999983
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.60 E-value=0.0078 Score=54.17 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++....+.|.||+|+|||+|.++++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556899999999999999999998764
No 287
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.55 E-value=0.015 Score=57.93 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
+.|..|+|.|.||+|||++++.+++.++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 346789999999999999999999987543
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.52 E-value=0.0041 Score=55.59 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=17.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHH-HHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVF-AKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA-~~l 173 (351)
++....+.|.||+|+|||+++++++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445689999999999999999999 765
No 289
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.52 E-value=0.014 Score=57.89 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
.++|.||||||||+++.++++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999877
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.51 E-value=0.0099 Score=56.48 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+++...+.|.||+|+|||+|+++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45666789999999999999999999987
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.48 E-value=0.01 Score=58.91 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.|..|++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45789999999999999999998876 4666666654
No 292
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.48 E-value=0.029 Score=50.68 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
...+++||.|+|||+.+-..+... |..++.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 567799999999998888776654 667776654
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.47 E-value=0.16 Score=51.49 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=25.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-------CCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l-------g~~~i~vs~s 183 (351)
.+|+.|++|+|||++++++...+ .+.++.++..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 68999999999999999987643 2345665543
No 294
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.41 E-value=0.069 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..++|.||.|+|||++.++|+.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 57999999999999999999864
No 295
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.36 E-value=0.023 Score=51.50 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh-------CCccEEec
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMS 181 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l-------g~~~i~vs 181 (351)
...-|.|.||+|+|||++++.+++.+ |..++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 45678999999999999999999987 55555443
No 296
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.32 E-value=0.025 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++.+..++|.||.|+|||++++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4467789999999999999999999876
No 297
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.31 E-value=0.014 Score=51.24 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=27.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
+|++|++|+|||++|+.++.. +.+.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 87777766544
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.30 E-value=0.01 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+.|.||+|+|||+|++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 299
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.30 E-value=0.06 Score=51.58 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~v 180 (351)
+.+..|.|.|+||+|||+++..++..+ |..+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 345689999999999999999998876 4444443
No 300
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.27 E-value=0.019 Score=59.00 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC----CccEEeccCc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGE 184 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg----~~~i~vs~s~ 184 (351)
...+..|+|.|++|+|||++|+++++.++ .+++.++...
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 34567899999999999999999999986 6667766543
No 301
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.23 E-value=0.0044 Score=56.64 Aligned_cols=28 Identities=18% Similarity=0.060 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+.+.-|.|.|++|+|||++++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999999983
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.20 E-value=0.0086 Score=60.79 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..+++|.||+|+|||++.++++..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44699999999999999999998763
No 303
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.20 E-value=0.021 Score=51.06 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
...|.|.|++|+|||++++.+++.+ |..++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4678999999999999999999987 45555443
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.19 E-value=0.013 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
...+|+||.|+|||+++++|+-.++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999987753
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.18 E-value=0.014 Score=50.68 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
....+.|.|++|+|||+|++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998864
No 306
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.17 E-value=0.015 Score=54.94 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+..+.|.||+|||||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 307
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.13 E-value=0.039 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..++|.||+|+|||++.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4689999999999999999999874
No 308
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.08 E-value=0.014 Score=52.59 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
-.|.|+|..|||||++++.+++ +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3789999999999999999987 898877544
No 309
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.07 E-value=0.019 Score=59.02 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
...++|.||||||||+++.+++..+ +..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3579999999999999999998754 555555543
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.99 E-value=0.025 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..+-|.|.|++|+|||++++.+++.++.....+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 356899999999999999999999998744333
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.97 E-value=0.017 Score=50.16 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
...+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3478999999999999999999875 45554444
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.84 E-value=0.098 Score=51.84 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
.|..+++.|++|+|||+++..+|..+ +..+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56789999999999999999999876 445555443
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.82 E-value=0.015 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++. ..+.|.||.|+|||+|.++++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 689999999999999999999765
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.75 E-value=0.019 Score=53.95 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s 183 (351)
+.+..++|.||+|+|||+++..+|..+ |..+..+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356789999999999999999998765 5556655543
No 315
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.71 E-value=0.014 Score=52.94 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444579999999999999999998754
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.70 E-value=0.015 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578999999999999999998654
No 317
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.59 E-value=0.013 Score=52.82 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334578999999999999999998654
No 318
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.50 E-value=0.017 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444578999999999999999998754
No 319
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.49 E-value=0.028 Score=49.41 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
+|+||.|++|+|||++|.++... |..++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 59999999999999999998874 55433
No 320
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.43 E-value=0.026 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+..|.|.|++|+|||++++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.41 E-value=0.018 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..+.|.||+|||||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999998763
No 322
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.39 E-value=0.019 Score=52.30 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445579999999999999999998754
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.38 E-value=0.022 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
++....+.|.||.|+|||+|.++|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344457999999999999999999975
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.36 E-value=0.017 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...+.|.||.|+|||+|.++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 325
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.31 E-value=0.25 Score=54.14 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA 170 (351)
...++|.||.|+|||++.++++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999984
No 326
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.26 E-value=0.02 Score=52.94 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3444578999999999999999998764
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.25 E-value=0.021 Score=52.64 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444579999999999999999998754
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.23 E-value=0.023 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-..+.|.||+|||||+|.++||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334478999999999999999999754
No 329
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.22 E-value=0.099 Score=52.14 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
...+..++.|+||||||++...+++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3457889999999999999988765
No 330
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.22 E-value=0.022 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+....+.|.||.|+|||+|.++|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33457899999999999999999974
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.21 E-value=0.018 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578999999999999999998754
No 332
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.21 E-value=0.024 Score=58.68 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999888776654
No 333
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.21 E-value=0.021 Score=52.92 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444579999999999999999998754
No 334
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.18 E-value=0.025 Score=50.64 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
.+++.|+|+|.|||||+++|+.+.+.+|.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 46689999999999999999999887764
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.16 E-value=0.019 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
....+.|.||.|+|||+|.++|+...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
No 336
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.15 E-value=0.036 Score=50.13 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC----ccEE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 179 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~----~~i~ 179 (351)
..+..|.|.|++|+|||++++.+++.++. .++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 44678999999999999999999987644 6655
No 337
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.12 E-value=0.019 Score=52.44 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998764
No 338
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.11 E-value=0.027 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
..-+.|.||+|||||+|+++++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999987543
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.10 E-value=0.02 Score=51.70 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998765
No 340
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.09 E-value=0.023 Score=58.28 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++....+.|.|++|||||+++++++..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34556799999999999999999999985
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.09 E-value=0.024 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|||||+|.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 334578899999999999999999754
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.027 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334578899999999999999999764
No 343
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.07 E-value=0.024 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578999999999999999998754
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.06 E-value=0.027 Score=54.58 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334578899999999999999999754
No 345
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.06 E-value=0.024 Score=52.23 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444578999999999999999998754
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.03 E-value=0.018 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...+.|.||.|+|||+|.++++...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.01 E-value=0.028 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-..+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334578999999999999999999765
No 348
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.00 E-value=0.021 Score=53.28 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334578999999999999999998754
No 349
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.97 E-value=0.029 Score=54.69 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|||||+|.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999754
No 350
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.96 E-value=0.031 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-++|.|++|+|||+|.++++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 351
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.95 E-value=0.022 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334578999999999999999998754
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.87 E-value=0.031 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.-++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 353
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.86 E-value=0.025 Score=51.25 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHH-HHHHHHHHh--CCccEEecc
Q 018745 149 PLILGIWGGKGQGKSF-QCELVFAKM--GINPIMMSA 182 (351)
Q Consensus 149 p~glLL~GppGtGKT~-LA~aIA~~l--g~~~i~vs~ 182 (351)
....+++||.|+|||+ |.+.+-+.. +..++.+..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3578999999999999 556653333 555555543
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.86 E-value=0.18 Score=47.98 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
......+.|.|+||+|||+++.+++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455688999999999999999998765
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.84 E-value=0.027 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-..+.|.||+|||||+|.++||.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999754
No 356
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.84 E-value=0.024 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334478999999999999999998754
No 357
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.80 E-value=0.024 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||+|||||+|.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999754
No 358
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.80 E-value=0.024 Score=52.05 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578999999999999999998764
No 359
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=93.80 E-value=0.014 Score=44.95 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 299 TREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+.++|.+|++.++++ .+++.+.|++.++||+|+||.-
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~ 42 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 42 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHH
Confidence 567899999988865 3677999999999999999864
No 360
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.78 E-value=0.024 Score=52.87 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++|+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578999999999999999998754
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.77 E-value=0.025 Score=50.58 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.+..+.|.||.|+|||++++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999999887
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.75 E-value=0.029 Score=54.68 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
....+.|.||+|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33478899999999999999999764
No 363
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.69 E-value=0.045 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987
No 364
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.68 E-value=0.039 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+.|.||+|+|||+|.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.68 E-value=0.048 Score=47.39 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..-|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 366
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.64 E-value=0.041 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~ 172 (351)
-+++.|++|+|||+|+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 367
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.59 E-value=0.04 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999988776554
No 368
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.56 E-value=0.083 Score=47.39 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh--CCccEEec
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l--g~~~i~vs 181 (351)
..+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 445789999999999999999999776 55555554
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.54 E-value=0.045 Score=45.93 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
|...+|+||.|+|||++..||+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998665
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.056 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+...-|++.|++|+|||+|..+++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999865
No 371
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.43 E-value=0.047 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|++.|++|+|||+|+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 372
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.41 E-value=0.039 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-..+.|.||+|||||+|.++|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34457999999999999999999864
No 373
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.37 E-value=0.058 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556689999999999999999999765
No 374
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.36 E-value=0.045 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~ 172 (351)
-|++.|++|+|||+|+..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 375
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.31 E-value=0.049 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 376
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.31 E-value=0.036 Score=52.02 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444578999999999999999998764
No 377
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.29 E-value=0.23 Score=55.90 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++-.-+.|.||+|+|||+|++++..-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3444578999999999999999998754
No 378
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.038 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...+.|.||.|+|||+|.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999998765
No 379
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.25 E-value=0.041 Score=55.64 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++.-..++|.||+|+|||+|+++++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55666789999999999999999998764
No 380
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.22 E-value=0.068 Score=43.98 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.+.-|++.|++|+|||+|...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999763
No 381
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=93.22 E-value=0.024 Score=42.83 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
+.++|.+|++.++++. +++++.+++.++||+|+||.-.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l 43 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSI 43 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 6789999999998753 6678999999999999999744
No 382
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.21 E-value=0.053 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 383
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.20 E-value=0.096 Score=46.43 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh--CCccEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l--g~~~i~vs 181 (351)
+-|.|-|+.|+|||++++.+++.+ |..++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 357889999999999999999988 45555443
No 384
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.18 E-value=0.054 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 385
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.16 E-value=0.25 Score=48.73 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
=++|.||+|+|||.|+..|++..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 47889999999999999998864
No 386
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.14 E-value=0.046 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999888776654
No 387
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.11 E-value=0.042 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~ 171 (351)
-++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 388
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.09 E-value=0.052 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
.-++|.|++|+|||+|.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999975
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.08 E-value=0.093 Score=46.13 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
-|.|-|+-|||||++++.+++.+ |.+++.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 36788999999999999999887 677666543
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.04 E-value=0.044 Score=52.82 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
...++|.||+|+|||+|+++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34799999999999999999998764
No 391
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.04 E-value=0.057 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.-|++.|++|+|||+|.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.00 E-value=0.058 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999754
No 393
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.98 E-value=0.055 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~ 171 (351)
+.-|+|.|++|+|||+|...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34689999999999999999864
No 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.98 E-value=0.068 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45788999999999999999998864
No 395
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.96 E-value=0.06 Score=44.29 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-|++.|++|+|||+|...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 396
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.95 E-value=0.04 Score=52.18 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||+|+|||+|+++|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3445689999999999999999998754
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.94 E-value=0.057 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 398
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.94 E-value=0.054 Score=52.69 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-..+.|.||+|+|||+|.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344578999999999999999998754
No 399
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.90 E-value=0.061 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-|++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998764
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.88 E-value=0.063 Score=45.03 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.-|+|.|++|+|||+|+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 401
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.87 E-value=0.063 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.82 E-value=0.069 Score=43.69 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 018745 152 LGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~ 172 (351)
|++.|++|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 403
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=92.81 E-value=0.13 Score=49.75 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=45.8
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC
Q 018745 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~ 188 (351)
..+.|.||.+..+ .-.+++.+.++.+++...+. |. ...|+-||..|+|||+... |.. . ...
T Consensus 69 ~~~~F~fD~Vf~~-~sQ~~Vy~~~~~~lv~~~l~--G~--N~tIfAYGqTGSGKTyTM~------G~~------~--~~~ 129 (358)
T 2nr8_A 69 TDWSFKLDGVLHD-ASQDLVYETVAKDVVSQALD--GY--NGTIMCYGQTGAGKTYTMM------GAT------E--NYK 129 (358)
T ss_dssp CEEEEECSEEEES-CCHHHHHHHHTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHHT------BCS------S--CGG
T ss_pred cceEEECCeecCC-cCHHHHHHHHHHHHHHHHhC--CC--ceEEEEECCCCCCCceEec------ccc------c--ccc
Confidence 3456777876642 22334555555566666654 22 3479999999999999852 211 0 001
Q ss_pred CCCChHHHHHHHHHHH
Q 018745 189 NAGEPAKLIRQRYREA 204 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A 204 (351)
..|--.+.++++|...
T Consensus 130 ~~Giipra~~~lF~~i 145 (358)
T 2nr8_A 130 HRGILPRALQQVFRMI 145 (358)
T ss_dssp GBCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 2344566777777765
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.79 E-value=0.066 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|..++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 405
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.74 E-value=0.08 Score=43.93 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
.+.-|+|.|++|+|||+|..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455789999999999999999875
No 406
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.063 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
.-|++.|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999976
No 407
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.69 E-value=0.056 Score=49.47 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
.|.|+|++|||||+.++.+...+|+++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 689999999999999999998888764
No 408
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.68 E-value=0.065 Score=44.11 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA 170 (351)
-|+|.|++|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.68 E-value=0.084 Score=50.78 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
..-..+.|.||+|+|||+|.+.|+......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344578999999999999999999998654
No 410
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.65 E-value=0.065 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-++|.|++|+|||+|.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.061 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
....++|.||.|||||+|+++|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34468899999999999999998864
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.62 E-value=0.071 Score=44.12 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..-|++.|++|+|||+|+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998653
No 413
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.58 E-value=0.068 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999854
No 414
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.57 E-value=0.087 Score=44.31 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.-|++.|++|+|||+|+.++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999875
No 415
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.57 E-value=0.088 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567788999999999999999875
No 416
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.55 E-value=0.1 Score=51.81 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
+..-..+.|.||+|||||+|.++|+......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4444578999999999999999999987544
No 417
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.51 E-value=0.062 Score=44.08 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA 170 (351)
-|+|.|++|+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999885
No 418
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.48 E-value=0.075 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999864
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.45 E-value=0.037 Score=47.77 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
++...-+.|.|++|+|||+|.++++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34445799999999999999998864
No 420
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.066 Score=57.18 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.6
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~ 171 (351)
..+++||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998776654
No 421
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.44 E-value=0.066 Score=44.49 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~ 171 (351)
+.-|++.|++|+|||+|+..+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999999874
No 422
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.41 E-value=0.077 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 423
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.38 E-value=0.078 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 424
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.34 E-value=0.075 Score=44.06 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999875
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.31 E-value=0.081 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999998764
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.29 E-value=0.096 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...-|+|.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.29 E-value=0.076 Score=44.86 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|++.|++|+|||+|++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 428
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.28 E-value=0.081 Score=44.88 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...-|+|.|++|+|||+|+..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 429
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.28 E-value=0.077 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.25 E-value=0.074 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.146 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~ 171 (351)
..-|++.|++|+|||+|+.++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999864
No 431
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.20 E-value=0.099 Score=46.02 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
|...+|+||.|+|||++..||+-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 457799999999999999999877654
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.10 E-value=0.089 Score=44.04 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 433
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.10 E-value=0.088 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.-|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999887654
No 434
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.05 E-value=0.091 Score=43.83 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 435
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.98 E-value=0.094 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.-|+|.|++|+|||+|+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 436
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.96 E-value=0.094 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-|+|.|++|+|||+|+.++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 437
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.91 E-value=0.29 Score=44.63 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
.-|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4589999999999999999975
No 438
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.90 E-value=0.092 Score=44.39 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA 170 (351)
+.+.-|++.|++|+|||+|..++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999999885
No 439
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.88 E-value=0.096 Score=44.33 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999764
No 440
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.88 E-value=0.12 Score=43.00 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|++.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 441
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.86 E-value=0.2 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977766544
No 442
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.83 E-value=0.084 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~ 172 (351)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998764
No 443
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.83 E-value=0.51 Score=46.58 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=50.4
Q ss_pred ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-------------CC
Q 018745 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------FS 279 (351)
Q Consensus 213 p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-------------~~ 279 (351)
|.|+||||+|.+. .....+|+..++ .+...+ +|++||. ++
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lE-------------e~~~~~-~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALE-------------SSIAPI-VIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTT-------------STTCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhh-------------ccCCCE-EEEecCCccccccccccccccc
Confidence 4799999998763 223455666666 223334 4444433 77
Q ss_pred CCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCC--CCCHHHH
Q 018745 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDDI 321 (351)
Q Consensus 280 ~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~--~~~~~~l 321 (351)
.|+|.++. ||-.+.. -|+.++..+|++..+... .++.+.+
T Consensus 349 ~l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~ 391 (456)
T 2c9o_A 349 GIPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEAL 391 (456)
T ss_dssp TCCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred cCChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 88888885 6666422 289999999998776433 4454443
No 444
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.81 E-value=0.17 Score=44.51 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
-+..+++||+|+|||+.+-.++..+ |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3688999999999999888887765 66666654
No 445
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.79 E-value=0.11 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998753
No 446
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.1 Score=44.35 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..-|+|.|++|+|||+|+..+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.73 E-value=0.11 Score=43.27 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA 170 (351)
+.+.-|++.|++|+|||+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999999876
No 448
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.71 E-value=0.29 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|.|.|+||+|||+|..+++..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999999753
No 449
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.11 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999765
No 450
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.67 E-value=0.09 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998765
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.63 E-value=0.11 Score=44.33 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999988764
No 452
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.63 E-value=0.11 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-++|.|++|+|||+|..+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 453
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.62 E-value=0.089 Score=43.83 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..++..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999998864
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.58 E-value=0.11 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.110 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998764
No 455
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.58 E-value=0.1 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998853
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.57 E-value=0.12 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++. ..+.|.||.|||||+|.++|+..+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 444 6899999999999999999998763
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.52 E-value=0.11 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998764
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.52 E-value=0.11 Score=43.95 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-|+|.|++|+|||+|+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998754
No 459
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.48 E-value=0.14 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+++++|+|+|||+.+..++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999998877654
No 460
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.48 E-value=0.12 Score=44.27 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|.+.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 461
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.47 E-value=0.31 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..++|.|+.|+|||+|.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 368899999999999999998754
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.45 E-value=0.11 Score=44.33 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...-|+|.|++|+|||+|+..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999997653
No 463
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.44 E-value=0.11 Score=43.98 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 464
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.43 E-value=0.11 Score=44.13 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999887764
No 465
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.42 E-value=0.12 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.-|+|.|++|+|||+|...+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.40 E-value=0.12 Score=49.23 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 369999999999999999998775 55443
No 467
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.39 E-value=0.32 Score=44.31 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~ 172 (351)
-|+|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999754
No 468
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.38 E-value=0.14 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...+.|.|+||+|||+|..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998764
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.34 E-value=0.14 Score=43.94 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+...-|+|.|++|+|||+|+..+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999998753
No 470
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.33 E-value=0.12 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...-|+|.|++|+|||+|+.++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998854
No 471
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.32 E-value=0.11 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
|...+|+||.|+|||++..||+-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999996644
No 472
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.31 E-value=0.12 Score=47.24 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999754
No 473
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.30 E-value=0.19 Score=48.36 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~v 180 (351)
...+++.||+|+|||++++.++..+ +..++.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 3468899999999999999987654 4444443
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.1 Score=44.49 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+...-|+|.|++|+|||+|+..+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 33457999999999999999999764
No 475
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.24 E-value=0.13 Score=43.14 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.+.-|++.|++|+|||+|+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999998753
No 476
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.23 E-value=0.12 Score=44.28 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998754
No 477
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.19 E-value=0.12 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...+|+||.|+|||+|..+|+-.+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999998553
No 478
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.18 E-value=0.053 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
+.|.||+|||||+|.++|+..+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 346799999999999999988743
No 479
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.17 E-value=0.12 Score=44.41 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+.++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999999864
No 480
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.15 E-value=0.11 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCcE--EEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLI--LGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~g--lLL~GppGtGKT~LA~aIA~~ 172 (351)
+.... +.|.||+|+|||+|.++++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 33445 889999999999999999865
No 481
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.03 E-value=0.12 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 482
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.99 E-value=0.63 Score=42.75 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCCcEEEEEcC-CCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 147 KVPLILGIWGG-KGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 147 ~~p~glLL~Gp-pGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
+.++.|+++++ +|+|||++|..+|..+ |..++.+++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45678999987 8999999999888765 7778877764
No 483
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.95 E-value=0.13 Score=44.88 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..++..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.95 E-value=0.14 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-..+.|.||.|+|||+|.++|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444579999999999999999998754
No 485
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=90.87 E-value=0.2 Score=47.87 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=36.8
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHH
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQC 166 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA 166 (351)
+.|.||.+.+..---+++.+.++.+++...+. | ....|+-||..|+|||+..
T Consensus 44 ~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~--G--~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE--G--YNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp EEEECSEEECTTCCHHHHHHHHTHHHHHHHHT--T--CCEEEEEECSTTSSHHHHH
T ss_pred EEEECCeEeCCCCCHHHHHHHHhhhhHHHHhC--C--CeEEEEEECCCCCCCceEe
Confidence 46888887765444445566666666666664 2 2457999999999999986
No 486
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.15 Score=42.93 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
+...-|++.|++|+|||+|...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999884
No 487
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.83 E-value=0.13 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+.|.||+|+|||+|.++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 478999999999999999998 54
No 488
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.18 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999763
No 489
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.78 E-value=0.43 Score=43.53 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH-h--CCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK-M--GINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~-l--g~~~i~vs 181 (351)
-...+++||.|+|||+.+-..+.. . |..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367899999999999665544433 3 55666655
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.13 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998764
No 491
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=90.74 E-value=0.19 Score=48.45 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=38.0
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHH
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQC 166 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA 166 (351)
.+.|.||.+.+..---+++.+.++.+++...+. | ....|+-||..|+|||+..
T Consensus 43 ~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~--G--~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 43 SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ--G--YNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp SCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT--T--CCEEEEEEESTTSSHHHHH
T ss_pred CeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc--C--CccceeeecCCCCCCCeEE
Confidence 457888887765444456666666667766664 2 2457999999999999976
No 492
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.73 E-value=0.16 Score=43.87 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..-|+|.|++|+|||+|+..+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998643
No 493
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.72 E-value=0.13 Score=45.73 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+.-|+|.|++|+|||+|..++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 457899999999999999999764
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.67 E-value=0.11 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+.|.||+|+|||+|.++++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 478899999999999999998654
No 495
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.67 E-value=0.14 Score=43.41 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.65 E-value=0.16 Score=43.00 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
...-|+|.|++|+|||+|...++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999998754
No 497
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.59 E-value=0.14 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+.|.||+|+|||+|+++++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999998644
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.59 E-value=0.083 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..-|+|.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999988653
No 499
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.56 E-value=0.11 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.-|+|.||+|+|||+|.+.++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999998753
No 500
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.54 E-value=0.13 Score=48.93 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|+||.|++|+|||++|..+.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 36999999999999999988754 465544
Done!