BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018746
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 94.0 bits (232), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
KGPWT EED ++ +Q++GP W + + R K CR RW N+L P +K+ ++T++
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
E+++I LGNRWA IA L RTDN IKN+WN+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
+G +T +E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 93.6 bits (231), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
KGPWT EED ++ +Q++GP W + + R K CR RW N+L P +K+ ++T++
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
E+++I LGNRWA IA L RTDN IKN+WN+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
+G +T +E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
+ KGPWT EED ++ ++Q++GP W + + R K CR RW N+L P +K+ ++T
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
++E+++I LGNRWA IA L RTDN +KN+WN+
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 48 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKMII-HLQALLGNRWAAIASYLRQRTDNDIKN 106
R C+ RW L P + +G +T +E++ +I H+Q RW+ IA +L+ R +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNTH 111
W+ H
Sbjct: 68 RWHNH 72
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
KGPWT EED ++ +Q++GP W + + R K CR RW N+L P +K+ ++T++
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
E+++I LGNRWA IA L RTDN IKN+WN+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
K WT EED L ++++G +W+ + N R C+ RW L P + +G +T +
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 74 EEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 89.7 bits (221), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
KGPWT EED ++ ++++G W + + R K CR RW N+L P +K+ ++T++
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
E+++I +LGNRWA IA L RTDN +KN+WN+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 63 PGIKRGNFTDQEEKMIIHLQALLGNR-WAAIASYLRQRTDNDIKNYWNTH 111
P + +G +T +E++ +I L G + W IA +L+ R + W+ H
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 52
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
KGP+T ED ++ Y++E+GP NW P T L R K CR RW N+L P + + +T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
+E++ I LG++W+ IA + RTDN IKN WN+
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTD 72
KK +TPEED +L + +HG +W+ + T R ++ CR RW NYL P I +T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 QEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
+E+ +++ G +WA IA + RTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 12 IKKGPWTPEEDIILVSYIQEHG 33
I PWT EED +LV IQE+G
Sbjct: 60 ISHTPWTAEEDALLVQKIQEYG 81
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQ 73
K +T EED+ L + +G +W + + + R + CR RW NY+ P ++ ++ +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYW 108
E+ ++ A G +W I+ +L+ R+DN+I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 11 GIKKGPWTPEEDIILVSYIQEHGP 34
++ PW+PEED++L E+GP
Sbjct: 50 ALRTDPWSPEEDMLLDQKYAEYGP 73
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 65 IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
+K+ ++T++E+++I LGNRWA IA L RTDN IKN+WN+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED L+ +Q++GP W + + R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
+G +T +E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 65 IKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110
+K+ ++T++E++++ LGNRWA IA L RTDN IKN+WN+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W + + R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 31.2 bits (69), Expect = 0.84, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
+G +T +E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
KGPWT EED ++ +Q++GP W + + R K CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTH 111
+G +T +E++ +I L G RW+ IA +L+ R + W+ H
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRAVPTNTGLL--RCSKSCRLRWTNYLRPGIKRGNFT 71
W ED IL + + ++G W + + LL + +K C+ RW +L P IK+ ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIAS---LLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 32.0 bits (71), Expect = 0.47, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW A+ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW A+ N + R + + RW R G+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW A+ N + R + + RW R G+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 66
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW A+ N + R + + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLL-RCSKSCRLRWTNYLRPGI 65
KK WT EE + + +Q++G GNW A+ N + R + + RW R G+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 62
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 17 WTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIK 66
W +E+++L+ + G GNW + G R + CR +YL+ I+
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR---DHYLKTYIE 58
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ + N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63
K WT EED L ++++G +W+ + N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1RWZ|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From A. Fulgidus
pdb|1RXM|A Chain A, C-Terminal Region Of Fen-1 Bound To A. Fulgidus Pcna
pdb|1RXZ|A Chain A, C-Terminal Region Of A. Fulgidus Fen-1 Complexed With A.
Fulgidus Pcna
pdb|3P83|A Chain A, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|B Chain B, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|C Chain C, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 245
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 277 FDSSNST---DLSQSVTPESSA----FQDYESKQLLLDPSAGADDDQMPQLSLLEKWLFD 329
FD S S DL + + + S F E K L+DPSA + ++P+L L K + D
Sbjct: 75 FDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMD 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,250,590
Number of Sequences: 62578
Number of extensions: 392946
Number of successful extensions: 762
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 51
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)