Query 018746
Match_columns 351
No_of_seqs 330 out of 1437
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 9.7E-34 3.3E-38 232.6 9.1 105 11-116 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.9E-33 6.5E-38 232.6 8.0 103 14-117 1-103 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 5.7E-33 2E-37 237.2 8.1 109 13-122 1-109 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 8.2E-33 2.8E-37 235.0 8.0 108 8-116 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.5E-32 5E-37 233.5 8.9 105 8-114 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-32 5.8E-37 240.7 1.6 144 11-155 3-156 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-30 4.6E-35 228.6 8.2 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.8E-23 6E-28 177.5 2.2 115 40-155 1-125 (128)
9 2dim_A Cell division cycle 5-l 99.8 9.2E-22 3.1E-26 151.2 2.5 66 9-75 4-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 7.1E-18 2.4E-22 157.4 7.5 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.1E-17 3.6E-22 130.7 6.2 59 53-112 9-67 (73)
12 2din_A Cell division cycle 5-l 99.7 5E-17 1.7E-21 123.4 7.1 60 59-119 1-60 (66)
13 2d9a_A B-MYB, MYB-related prot 99.7 1.5E-17 5.1E-22 124.0 2.8 57 9-66 3-59 (60)
14 2cu7_A KIAA1915 protein; nucle 99.7 9.8E-17 3.4E-21 123.9 6.8 58 61-118 3-60 (72)
15 1gvd_A MYB proto-oncogene prot 99.7 2.3E-17 8E-22 119.6 2.9 52 12-64 1-52 (52)
16 2juh_A Telomere binding protei 99.7 1.9E-17 6.4E-22 140.8 2.2 82 9-91 12-103 (121)
17 1ity_A TRF1; helix-turn-helix, 99.6 4.9E-17 1.7E-21 124.6 2.4 63 9-71 5-68 (69)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 4E-17 1.4E-21 118.2 1.7 52 12-64 1-52 (52)
19 2roh_A RTBP1, telomere binding 99.6 1.1E-16 3.6E-21 136.3 4.0 78 10-88 27-114 (122)
20 2d9a_A B-MYB, MYB-related prot 99.6 1.9E-16 6.3E-21 118.0 4.7 55 62-116 3-58 (60)
21 2dim_A Cell division cycle 5-l 99.6 2.4E-16 8.2E-21 120.9 3.7 63 62-124 4-67 (70)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 8.8E-16 3E-20 111.1 5.9 50 65-114 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.6 1.5E-15 5E-20 110.1 5.6 50 65-114 1-51 (52)
24 3sjm_A Telomeric repeat-bindin 99.6 2.8E-16 9.4E-21 119.5 1.5 56 11-66 8-64 (64)
25 1ity_A TRF1; helix-turn-helix, 99.6 2.1E-15 7.3E-20 115.4 5.4 59 60-118 3-64 (69)
26 1x41_A Transcriptional adaptor 99.6 4.6E-15 1.6E-19 110.9 6.8 53 62-114 3-56 (60)
27 1x41_A Transcriptional adaptor 99.6 5.8E-16 2E-20 115.7 1.6 54 10-64 4-57 (60)
28 1w0t_A Telomeric repeat bindin 99.5 6.9E-15 2.4E-19 107.1 6.5 49 66-114 1-52 (53)
29 2din_A Cell division cycle 5-l 99.5 7.1E-16 2.4E-20 117.0 -0.9 59 8-69 3-61 (66)
30 2yum_A ZZZ3 protein, zinc fing 99.5 7.5E-15 2.6E-19 113.9 4.8 56 62-117 3-64 (75)
31 1w0t_A Telomeric repeat bindin 99.5 2.1E-15 7.3E-20 109.8 1.4 50 13-62 1-51 (53)
32 1gv2_A C-MYB, MYB proto-oncoge 99.5 2.3E-15 7.8E-20 123.1 1.3 92 64-155 1-102 (105)
33 2yum_A ZZZ3 protein, zinc fing 99.5 1.6E-15 5.5E-20 117.6 0.1 61 8-69 2-67 (75)
34 3osg_A MYB21; transcription-DN 99.5 6.2E-15 2.1E-19 124.9 3.3 91 62-152 6-105 (126)
35 2elk_A SPCC24B10.08C protein; 99.5 4.6E-14 1.6E-18 104.9 7.2 50 63-112 5-56 (58)
36 3sjm_A Telomeric repeat-bindin 99.5 2.5E-14 8.7E-19 108.6 5.9 51 65-115 9-62 (64)
37 2elk_A SPCC24B10.08C protein; 99.5 4.9E-15 1.7E-19 110.2 1.4 52 10-61 5-56 (58)
38 2ltp_A Nuclear receptor corepr 99.2 5.8E-15 2E-19 118.8 0.0 57 59-115 8-64 (89)
39 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.8E-14 9.5E-19 117.5 3.8 89 67-155 1-99 (107)
40 2cu7_A KIAA1915 protein; nucle 99.4 1.4E-14 4.7E-19 111.9 0.5 58 8-67 3-60 (72)
41 3zqc_A MYB3; transcription-DNA 99.4 1.3E-14 4.6E-19 123.4 0.3 91 67-157 2-102 (131)
42 2aje_A Telomere repeat-binding 99.4 2.3E-13 7.9E-18 113.0 4.3 79 8-86 7-94 (105)
43 2ckx_A NGTRF1, telomere bindin 99.3 3.8E-13 1.3E-17 107.3 3.6 69 15-84 1-79 (83)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.3 8.3E-13 2.8E-17 103.0 5.5 51 63-113 14-68 (73)
45 2llk_A Cyclin-D-binding MYB-li 99.3 2.6E-13 9E-18 105.8 2.0 58 6-67 15-72 (73)
46 2yus_A SWI/SNF-related matrix- 99.3 1.4E-12 4.7E-17 103.0 5.7 48 64-111 15-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 3.9E-17 103.5 2.9 52 7-60 11-62 (79)
48 2ltp_A Nuclear receptor corepr 98.9 5.5E-13 1.9E-17 107.2 0.0 54 8-63 10-63 (89)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.2E-12 4E-17 102.1 0.6 55 7-62 11-68 (73)
50 2ckx_A NGTRF1, telomere bindin 99.2 1.5E-11 5E-16 98.1 7.0 48 68-115 1-53 (83)
51 1x58_A Hypothetical protein 49 99.2 1.8E-11 6.1E-16 92.6 5.5 49 66-114 7-58 (62)
52 2juh_A Telomere binding protei 99.2 2.2E-11 7.6E-16 103.4 6.3 54 61-114 11-69 (121)
53 1ign_A Protein (RAP1); RAP1,ye 99.2 9.1E-12 3.1E-16 116.4 3.8 55 63-117 4-64 (246)
54 2aje_A Telomere repeat-binding 99.2 3.4E-11 1.2E-15 100.0 6.3 52 63-114 9-65 (105)
55 2cjj_A Radialis; plant develop 99.2 5.5E-11 1.9E-15 96.7 7.2 50 66-115 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 1.1E-10 3.6E-15 99.4 7.6 53 63-115 27-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.4E-14 81.7 6.4 47 66-112 11-57 (61)
58 3hm5_A DNA methyltransferase 1 98.9 1.9E-09 6.6E-14 87.6 6.8 66 50-119 17-87 (93)
59 2cjj_A Radialis; plant develop 98.9 2.1E-10 7.1E-15 93.3 0.1 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 9.8E-09 3.4E-13 79.7 6.7 50 64-114 5-58 (72)
61 2iw5_B Protein corest, REST co 98.7 1.9E-08 6.5E-13 93.4 7.4 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.6 7.3E-09 2.5E-13 78.3 1.7 49 12-62 6-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 9.5E-09 3.2E-13 76.9 2.1 52 8-61 6-57 (61)
64 2xag_B REST corepressor 1; ami 98.5 9.7E-08 3.3E-12 97.2 6.1 47 68-114 381-427 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 2.2E-07 7.4E-12 72.5 5.3 47 67-113 8-58 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.1E-08 1.1E-12 76.8 -0.2 51 11-63 5-58 (72)
67 1fex_A TRF2-interacting telome 98.3 5.9E-07 2E-11 67.1 4.8 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 1.1E-07 3.8E-12 71.0 0.5 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 3.5E-07 1.2E-11 71.3 0.7 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.1 6.2E-07 2.1E-11 83.3 1.8 50 11-62 130-179 (235)
71 2yqk_A Arginine-glutamic acid 98.1 6.5E-06 2.2E-10 61.9 6.5 49 62-110 4-53 (63)
72 1ofc_X ISWI protein; nuclear p 98.0 1.6E-05 5.4E-10 76.9 9.7 104 15-119 111-280 (304)
73 1ug2_A 2610100B20RIK gene prod 97.9 1.4E-05 4.8E-10 64.6 6.4 48 67-114 33-83 (95)
74 4iej_A DNA methyltransferase 1 97.8 4.8E-05 1.6E-09 61.7 6.9 60 55-118 22-86 (93)
75 4eef_G F-HB80.4, designed hema 97.7 7.7E-06 2.6E-10 63.7 1.7 44 14-58 20-66 (74)
76 4eef_G F-HB80.4, designed hema 97.7 3.9E-06 1.3E-10 65.4 -0.0 43 67-109 20-66 (74)
77 2lr8_A CAsp8-associated protei 96.8 7.4E-06 2.5E-10 62.9 0.0 45 69-114 16-63 (70)
78 2crg_A Metastasis associated p 97.6 0.00013 4.3E-09 56.0 6.2 44 67-110 8-52 (70)
79 4a69_C Nuclear receptor corepr 97.6 0.0001 3.5E-09 59.6 5.8 44 67-110 43-86 (94)
80 2yqk_A Arginine-glutamic acid 97.4 5.7E-05 1.9E-09 56.7 2.4 49 9-59 4-53 (63)
81 2xag_B REST corepressor 1; ami 97.2 8.5E-05 2.9E-09 75.7 1.8 49 11-61 377-425 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.0004 1.4E-08 54.5 4.8 52 67-119 4-69 (86)
83 3hm5_A DNA methyltransferase 1 97.0 0.00014 4.7E-09 59.1 1.0 50 12-62 28-81 (93)
84 1ug2_A 2610100B20RIK gene prod 96.7 0.00047 1.6E-08 55.7 1.7 58 3-61 17-81 (95)
85 2ebi_A DNA binding protein GT- 96.7 0.0001 3.5E-09 57.9 -2.4 49 13-61 3-63 (86)
86 2y9y_A Imitation switch protei 96.7 0.0052 1.8E-07 60.8 9.0 102 15-116 124-293 (374)
87 4a69_C Nuclear receptor corepr 96.6 0.00058 2E-08 55.2 1.4 44 14-59 43-86 (94)
88 2crg_A Metastasis associated p 96.5 0.0008 2.7E-08 51.5 1.6 45 13-59 7-52 (70)
89 2lr8_A CAsp8-associated protei 95.3 0.00061 2.1E-08 52.3 0.0 46 15-62 15-62 (70)
90 4b4c_A Chromodomain-helicase-D 93.5 0.052 1.8E-06 48.5 3.9 38 5-42 125-162 (211)
91 1irz_A ARR10-B; helix-turn-hel 93.2 0.31 1.1E-05 36.8 7.1 48 65-112 5-57 (64)
92 4iej_A DNA methyltransferase 1 92.9 0.029 9.8E-07 45.4 1.1 50 12-62 28-81 (93)
93 1ofc_X ISWI protein; nuclear p 92.2 0.18 6E-06 48.7 5.7 48 67-114 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 91.6 0.28 9.7E-06 43.6 6.1 52 66-117 6-62 (211)
95 2xb0_X Chromo domain-containin 87.0 0.43 1.5E-05 45.2 3.8 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 77.6 0.81 2.8E-05 34.5 1.3 49 12-60 5-56 (64)
97 2xb0_X Chromo domain-containin 76.5 6.4 0.00022 37.2 7.5 50 67-116 3-57 (270)
98 2o8x_A Probable RNA polymerase 59.0 20 0.00069 25.0 5.5 41 73-114 18-58 (70)
99 2li6_A SWI/SNF chromatin-remod 56.0 12 0.0004 30.6 4.2 40 78-117 54-101 (116)
100 1u78_A TC3 transposase, transp 54.5 51 0.0018 25.9 7.9 92 16-109 6-101 (141)
101 1ku3_A Sigma factor SIGA; heli 54.0 27 0.00091 25.1 5.6 41 73-114 13-57 (73)
102 2y9y_A Imitation switch protei 53.4 18 0.00062 35.7 5.7 47 67-113 123-171 (374)
103 2lm1_A Lysine-specific demethy 53.3 25 0.00086 27.9 5.7 39 77-115 48-98 (107)
104 2jrz_A Histone demethylase jar 52.6 22 0.00076 28.9 5.4 40 77-116 44-95 (117)
105 3hug_A RNA polymerase sigma fa 51.6 40 0.0014 25.3 6.4 42 73-115 40-81 (92)
106 1kkx_A Transcription regulator 51.5 16 0.00056 30.2 4.4 40 78-117 53-100 (123)
107 2cxy_A BAF250B subunit, HBAF25 48.7 28 0.00097 28.6 5.5 42 77-118 55-108 (125)
108 2p7v_B Sigma-70, RNA polymeras 48.1 29 0.00098 24.6 4.8 40 74-114 9-52 (68)
109 2eqy_A RBP2 like, jumonji, at 47.0 31 0.0011 28.3 5.4 40 77-116 46-97 (122)
110 2rq5_A Protein jumonji; develo 46.8 4.7 0.00016 33.6 0.4 46 35-83 64-113 (121)
111 1c20_A DEAD ringer protein; DN 43.0 40 0.0014 27.7 5.5 41 76-116 55-108 (128)
112 2jxj_A Histone demethylase jar 42.9 21 0.00072 27.8 3.6 37 78-114 41-89 (96)
113 3cz6_A DNA-binding protein RAP 42.1 19 0.00067 31.7 3.6 24 10-33 110-141 (168)
114 2li6_A SWI/SNF chromatin-remod 41.0 3.9 0.00013 33.5 -1.0 39 24-63 53-98 (116)
115 2jrz_A Histone demethylase jar 37.0 5.9 0.0002 32.5 -0.5 40 24-63 44-93 (117)
116 2kk0_A AT-rich interactive dom 36.9 48 0.0016 28.0 5.2 40 77-116 68-120 (145)
117 1x3u_A Transcriptional regulat 34.9 79 0.0027 22.5 5.5 41 70-113 17-57 (79)
118 1c20_A DEAD ringer protein; DN 34.5 6.2 0.00021 32.7 -0.8 40 24-63 56-106 (128)
119 3i4p_A Transcriptional regulat 34.3 47 0.0016 27.7 4.8 44 72-116 2-46 (162)
120 1or7_A Sigma-24, RNA polymeras 34.3 83 0.0028 25.9 6.3 29 85-114 155-183 (194)
121 3ulq_B Transcriptional regulat 33.5 1E+02 0.0035 23.4 6.2 45 66-113 26-70 (90)
122 3c57_A Two component transcrip 33.4 91 0.0031 23.7 5.9 41 69-112 27-67 (95)
123 2cxy_A BAF250B subunit, HBAF25 33.2 6.7 0.00023 32.4 -0.8 40 24-63 55-104 (125)
124 1fse_A GERE; helix-turn-helix 32.5 90 0.0031 21.7 5.4 41 69-112 11-51 (74)
125 2yqf_A Ankyrin-1; death domain 32.2 70 0.0024 25.4 5.2 35 71-106 14-48 (111)
126 1je8_A Nitrate/nitrite respons 32.0 90 0.0031 23.0 5.6 41 69-112 21-61 (82)
127 2eqy_A RBP2 like, jumonji, at 31.1 8 0.00027 31.9 -0.7 40 24-63 46-95 (122)
128 1tty_A Sigma-A, RNA polymerase 31.1 94 0.0032 23.1 5.6 39 74-113 22-64 (87)
129 3mzy_A RNA polymerase sigma-H 30.9 1.1E+02 0.0039 23.9 6.4 31 84-115 122-152 (164)
130 2rq5_A Protein jumonji; develo 30.9 64 0.0022 26.6 4.9 79 11-115 4-97 (121)
131 2k27_A Paired box protein PAX- 30.8 2.1E+02 0.0073 23.1 8.9 81 14-96 23-111 (159)
132 3e7l_A Transcriptional regulat 30.6 99 0.0034 21.8 5.3 32 72-104 18-49 (63)
133 1ig6_A MRF-2, modulator recogn 30.3 32 0.0011 27.4 2.9 40 77-116 37-89 (107)
134 1rp3_A RNA polymerase sigma fa 26.4 1.4E+02 0.0048 25.1 6.5 36 78-114 195-230 (239)
135 2o71_A Death domain-containing 25.8 81 0.0028 25.6 4.6 29 77-106 26-54 (115)
136 1k78_A Paired box protein PAX5 25.7 1.6E+02 0.0056 23.5 6.5 81 14-96 30-118 (149)
137 2of5_H Leucine-rich repeat and 25.4 73 0.0025 25.7 4.3 31 75-106 13-43 (118)
138 1xsv_A Hypothetical UPF0122 pr 24.8 1.9E+02 0.0065 22.8 6.6 40 74-114 29-68 (113)
139 2kk0_A AT-rich interactive dom 24.5 24 0.00083 29.9 1.2 40 24-63 68-118 (145)
140 2jpc_A SSRB; DNA binding prote 24.4 1.4E+02 0.0049 20.0 5.1 37 75-113 3-39 (61)
141 1k78_A Paired box protein PAX5 24.0 2.3E+02 0.0077 22.6 7.1 40 67-108 30-69 (149)
142 2e1c_A Putative HTH-type trans 23.5 1.3E+02 0.0043 25.5 5.6 43 72-115 26-69 (171)
143 2dbb_A Putative HTH-type trans 23.5 1.5E+02 0.0051 23.9 5.9 43 72-115 8-51 (151)
144 3i4p_A Transcriptional regulat 23.4 12 0.00042 31.5 -0.9 45 20-66 3-47 (162)
145 1ntc_A Protein (nitrogen regul 23.0 1.2E+02 0.0042 22.9 4.9 34 72-106 50-83 (91)
146 2of5_A Death domain-containing 23.0 77 0.0026 25.7 3.9 39 64-106 16-54 (114)
147 2rnj_A Response regulator prot 22.8 1.2E+02 0.004 22.6 4.7 41 69-112 29-69 (91)
148 1w1n_A Phosphatidylinositol 3- 22.3 8.6 0.0003 25.1 -1.6 15 200-214 16-30 (33)
149 2cyy_A Putative HTH-type trans 21.1 1.7E+02 0.0059 23.6 5.8 42 73-115 7-49 (151)
150 1s7o_A Hypothetical UPF0122 pr 20.6 2.9E+02 0.0098 21.8 6.9 43 70-114 23-65 (113)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=9.7e-34 Score=232.64 Aligned_cols=105 Identities=43% Similarity=0.836 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHH
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWA 90 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~ 90 (351)
.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746 91 AIASYLRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 91 ~IAk~LpgRT~~qcKnRW~~~Lkkkl 116 (351)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.9e-33 Score=232.56 Aligned_cols=103 Identities=28% Similarity=0.623 Sum_probs=99.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHH
Q 018746 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIA 93 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IA 93 (351)
||+||+|||++|+++|+.||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHhhHHHH
Q 018746 94 SYLRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 94 k~LpgRT~~qcKnRW~~~Lkkklk 117 (351)
++|||||+++|++||+.++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999998877543
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=5.7e-33 Score=237.24 Aligned_cols=109 Identities=36% Similarity=0.688 Sum_probs=103.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHH
Q 018746 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAI 92 (351)
Q Consensus 13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~I 92 (351)
.||+||+|||++|+++|..||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||.+|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhhHHHHHhhhh
Q 018746 93 ASYLRQRTDNDIKNYWNTHLKKKVKKLQLA 122 (351)
Q Consensus 93 Ak~LpgRT~~qcKnRW~~~LkkklkK~~~s 122 (351)
|++|||||+++|++||+.+|++++......
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999987655433
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8.2e-33 Score=234.98 Aligned_cols=108 Identities=41% Similarity=0.794 Sum_probs=102.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN 87 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~ 87 (351)
.+|.+++|+||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999889999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746 88 RWAAIASYLRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl 116 (351)
+|..||++|||||+++|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988754
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.5e-32 Score=233.51 Aligned_cols=105 Identities=35% Similarity=0.668 Sum_probs=100.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN 87 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~ 87 (351)
.+...++|+||+|||++|+++|++||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999996 9999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 88 RWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+|..||++|||||+++||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.7e-32 Score=240.68 Aligned_cols=144 Identities=24% Similarity=0.526 Sum_probs=84.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-cH
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN-RW 89 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W 89 (351)
++++++||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36799999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhhhhcccccccchhhHHHhhh
Q 018746 90 AAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDELASASSQQISRGQWERRLQ 155 (351)
Q Consensus 90 ~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~~~s~ss~~~~~gqWe~rLq 155 (351)
..||.+|||||+.||++||+++|++.+++..++.+ ..-+..|..+....++++...+++.|...|.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999987765555443 1112345555555666677777777776544
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.3e-30 Score=228.59 Aligned_cols=108 Identities=42% Similarity=0.795 Sum_probs=102.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN 87 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~ 87 (351)
.+|.+++++||+|||++|+++|+.||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 46889999999999999999999999888999999998 99999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746 88 RWAAIASYLRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 88 ~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl 116 (351)
+|..||++|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988754
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=1.8e-23 Score=177.46 Aligned_cols=115 Identities=22% Similarity=0.469 Sum_probs=75.5
Q ss_pred ccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHH
Q 018746 40 VPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118 (351)
Q Consensus 40 IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK 118 (351)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||.+|||||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788888 99999999999999999999999999999999999999995 6999999999999999999999999987766
Q ss_pred hhhhhc---------CCCCCCchhhhhhhcccccccchhhHHHhhh
Q 018746 119 LQLAAA---------GCSEDNSQYRDELASASSQQISRGQWERRLQ 155 (351)
Q Consensus 119 ~~~s~~---------~~~~~~~~~~~~~~s~ss~~~~~gqWe~rLq 155 (351)
..++.+ ...+.+|..+....++++...+++.|...|.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 555543 1112345666666666777777777776554
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.2e-22 Score=151.22 Aligned_cols=66 Identities=26% Similarity=0.563 Sum_probs=64.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHH
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEE 75 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED 75 (351)
.+.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5789999999999999999999999889999999999 99999999999999999999999999998
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.71 E-value=7.1e-18 Score=157.41 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=92.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----CccccccCCCccccccccccccccccCCCC-----------------
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGN-----WRAVPTNTGLLRCSKSCRLRWTNYLRPGIK----------------- 66 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~n-----W~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik----------------- 66 (351)
...+++++||+|||++|+++|+++|..+ |..||+.|+ |||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998532 999999999 99999999999999999986
Q ss_pred ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 018746 67 ------------RGNFTDQEEKMIIHLQAL-L------------------------------------------------ 85 (351)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~k-~------------------------------------------------ 85 (351)
+..||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999877 2
Q ss_pred -----CC----cHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 86 -----GN----RWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 86 -----G~----~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
|. .|..||+.+|+||.+++|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888664
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=130.74 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=47.2
Q ss_pred ccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 53 CRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 53 CR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
.--||.++|+|++++++||+|||++|+++|.+||++|..||++| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999999643
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=123.39 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=56.7
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHh
Q 018746 59 NYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKL 119 (351)
Q Consensus 59 n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~ 119 (351)
.+|+|.+++++||.|||++|+++|.+||++|..||. |+|||++|||+||+.+|++.+++.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 889999999999999999988654
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.5e-17 Score=123.95 Aligned_cols=57 Identities=25% Similarity=0.468 Sum_probs=54.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCC
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (351)
.|.+++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 3689999999999999999999999889999999998 99999999999999999876
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=9.8e-17 Score=123.95 Aligned_cols=58 Identities=26% Similarity=0.317 Sum_probs=55.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHH
Q 018746 61 LRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKK 118 (351)
Q Consensus 61 L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK 118 (351)
++|.+++++||+|||++|+++|.+||++|..||.+|||||++|||+||+.++++.+++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999887655
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=2.3e-17 Score=119.59 Aligned_cols=52 Identities=42% Similarity=0.841 Sum_probs=49.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (351)
+++|+||+|||++|+++|++||..+|..||..|+ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999878999999998 999999999999999984
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.65 E-value=1.9e-17 Score=140.77 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=76.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccC----CCcccccccccccccccc-----CCCCCC-CCChHHHHHH
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNT----GLLRCSKSCRLRWTNYLR-----PGIKRG-NFTDQEEKMI 78 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L~-----P~ikkg-~WT~EED~~L 78 (351)
++..++++||+|||+.|+++|++||.++|..|+..+ + +||..+|++||.|+|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467889999999999999999999988999999874 4 8999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCcHHH
Q 018746 79 IHLQALLGNRWAA 91 (351)
Q Consensus 79 l~lv~k~G~~W~~ 91 (351)
+.++..+|++|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999975
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=4.9e-17 Score=124.57 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=58.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-ccccccccccccccccCCCCCCCCC
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLRPGIKRGNFT 71 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ikkg~WT 71 (351)
++..++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999998899999999986 8999999999999999999988764
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=4e-17 Score=118.24 Aligned_cols=52 Identities=29% Similarity=0.657 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (351)
|++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999879999999998 999999999999999984
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=1.1e-16 Score=136.30 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=72.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccC----CCccccccccccccccc-----cCCCCCCCCChHH-HHHHH
Q 018746 10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNT----GLLRCSKSCRLRWTNYL-----RPGIKRGNFTDQE-EKMII 79 (351)
Q Consensus 10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l----~~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~EE-D~~Ll 79 (351)
...++++||+|||+.|+++|++||.++|..|+..+ + +|+..||++||.|++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45679999999999999999999999999999863 4 899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 018746 80 HLQALLGNR 88 (351)
Q Consensus 80 ~lv~k~G~~ 88 (351)
+++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.9e-16 Score=118.00 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=51.8
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl 116 (351)
+|.+++++||.|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999998754
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=120.93 Aligned_cols=63 Identities=24% Similarity=0.455 Sum_probs=57.8
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA 124 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~ 124 (351)
.|.+++++||.|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++..++.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4678999999999999999999999 79999999999999999999999999998877666544
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=8.8e-16 Score=111.13 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=46.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 65 IKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+++++||.|||.+|+++|.+||. +|..||.+||+||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 899999999999999999999999876
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.5e-15 Score=110.08 Aligned_cols=50 Identities=30% Similarity=0.664 Sum_probs=47.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 65 IKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+++++||.|||++|+++|.+||. +|..||.+|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999999875
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=2.8e-16 Score=119.51 Aligned_cols=56 Identities=32% Similarity=0.502 Sum_probs=49.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-ccccccccccccccccCCCC
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLRPGIK 66 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~P~ik 66 (351)
..+|++||+|||++|+++|++||.++|..||..+++ +|++.||++||.|+++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 357999999999999999999999899999988643 79999999999999998864
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=2.1e-15 Score=115.41 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=54.1
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhHHHHH
Q 018746 60 YLRPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKKKVKK 118 (351)
Q Consensus 60 ~L~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~LkkklkK 118 (351)
...+..++++||.|||++|+++|.+|| ++|..||.+|+ +||+.|||+||+++|++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 356678899999999999999999999 79999999999 999999999999999987654
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=4.6e-15 Score=110.87 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=49.6
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.+.+.+++||.|||++|+++|.+|| ++|.+||++||+||+.|||+||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 7999999999999999999999998764
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=5.8e-16 Score=115.73 Aligned_cols=54 Identities=20% Similarity=0.499 Sum_probs=51.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCC
Q 018746 10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64 (351)
Q Consensus 10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ 64 (351)
+.+++++||+|||++|+++|++||.++|..||..|+ +|++.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 578999999999999999999999889999999999 999999999999999765
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=6.9e-15 Score=107.10 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=46.4
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhH
Q 018746 66 KRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~Lkk 114 (351)
++++||+|||++|+++|.+|| ++|..||.+|+ +||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999998874
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-16 Score=117.01 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=54.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~ 69 (351)
..|.+++++||+|||++|+++|+.||. +|..||. ++ +|++.||++||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 578999999999999999999999995 9999999 66 79999999999999999877653
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.5e-15 Score=113.87 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=52.1
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC------CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLG------NRWAAIASYLRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G------~~W~~IAk~LpgRT~~qcKnRW~~~Lkkklk 117 (351)
+|.+.+++||.|||++|+++|.+|| ++|..||.+|++||+.||++||+++|.+.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7899999999999999999999999987553
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=2.1e-15 Score=109.83 Aligned_cols=50 Identities=30% Similarity=0.473 Sum_probs=46.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccccCCC-cccccccccccccccc
Q 018746 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGL-LRCSKSCRLRWTNYLR 62 (351)
Q Consensus 13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~-~Rt~kQCR~RW~n~L~ 62 (351)
++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 5999999999999875
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.50 E-value=2.3e-15 Score=123.10 Aligned_cols=92 Identities=22% Similarity=0.453 Sum_probs=71.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchh
Q 018746 64 GIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQY 133 (351)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~ 133 (351)
++++++||+|||++|+++|.+||. +|..||.+||+||+.||+.||.++|.+.+++..++.+ ..-+.+|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 367899999999999999999996 7999999999999999999999999887655544432 111234666
Q ss_pred hhhhhcccccccchhhHHHhhh
Q 018746 134 RDELASASSQQISRGQWERRLQ 155 (351)
Q Consensus 134 ~~~~~s~ss~~~~~gqWe~rLq 155 (351)
+....++++...+++.|...|.
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHh
Confidence 6666666777777777776554
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-15 Score=117.64 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=56.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCccccccCCCccccccccccccccccCCCCCCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGP-----GNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGN 69 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~-----~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~ 69 (351)
.+|.+++++||+|||++|+++|+.||. .+|..||..|+ +|+..||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999999999999996 78999999999 99999999999999998877764
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.50 E-value=6.2e-15 Score=124.87 Aligned_cols=91 Identities=16% Similarity=0.298 Sum_probs=71.0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhcC---------CCCCCch
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAAG---------CSEDNSQ 132 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~~---------~~~~~~~ 132 (351)
.+..++++||+|||++|+++|.+||.+|..||..||+||..||+.||+++|.+.+++..++.+. .-+.+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 4567899999999999999999999999999999999999999999999999887766555431 1123455
Q ss_pred hhhhhhcccccccchhhHHH
Q 018746 133 YRDELASASSQQISRGQWER 152 (351)
Q Consensus 133 ~~~~~~s~ss~~~~~gqWe~ 152 (351)
.+.....+++...+++.|..
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHH
Confidence 55555555666666666654
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=4.6e-14 Score=104.92 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC-CCCHHHHHHHHHHHh
Q 018746 63 PGIKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR-QRTDNDIKNYWNTHL 112 (351)
Q Consensus 63 P~ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp-gRT~~qcKnRW~~~L 112 (351)
..+.+++||.|||++|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999999865
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=2.5e-14 Score=108.65 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=46.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC--CCCHHHHHHHHHHHhhHH
Q 018746 65 IKRGNFTDQEEKMIIHLQALLG-NRWAAIASYLR--QRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp--gRT~~qcKnRW~~~Lkkk 115 (351)
.++++||+|||++|+++|.+|| ++|..||++++ +||+.|||+||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999976 999999999999988764
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=4.9e-15 Score=110.17 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=48.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746 10 IGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 10 p~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (351)
..+.+++||+|||++|+++|++||.++|..||..|+.+|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3577899999999999999999998899999999987899999999999875
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=5.8e-15 Score=118.79 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=53.4
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 59 NYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 59 n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
..+.|.+++++||.|||.+|+++|.+||++|..||.+|||||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999988774
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.45 E-value=2.8e-14 Score=117.53 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=70.9
Q ss_pred CCCCChHHHHHHHHHHHHhCC-cHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhh
Q 018746 67 RGNFTDQEEKMIIHLQALLGN-RWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDE 136 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~-~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~ 136 (351)
+++||.|||++|+++|.+||. +|..||.+||+||+.||+.||.++|.+.+++..++.+ ..-+.+|..+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 8999999999999999999999999987766555543 112335666666
Q ss_pred hhcccccccchhhHHHhhh
Q 018746 137 LASASSQQISRGQWERRLQ 155 (351)
Q Consensus 137 ~~s~ss~~~~~gqWe~rLq 155 (351)
..++++...+++.|...+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHh
Confidence 6667777777888876443
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.4e-14 Score=111.88 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikk 67 (351)
..|.+++++||+|||++|+++|+.||. +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999995 9999999998 999999999999999887665
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.43 E-value=1.3e-14 Score=123.45 Aligned_cols=91 Identities=20% Similarity=0.388 Sum_probs=72.3
Q ss_pred CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHHHHhhhhhc---------CCCCCCchhhhh
Q 018746 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKVKKLQLAAA---------GCSEDNSQYRDE 136 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~LkkklkK~~~s~~---------~~~~~~~~~~~~ 136 (351)
+|+||.|||++|+++|.+|| ++|..||.+|||||+.||+.||.++|.+.+++..++.+ ...+.+|..+..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999 78999999999999999999999999988766655543 122345666666
Q ss_pred hhcccccccchhhHHHhhhhH
Q 018746 137 LASASSQQISRGQWERRLQTD 157 (351)
Q Consensus 137 ~~s~ss~~~~~gqWe~rLqt~ 157 (351)
...+++...+++.|...|..+
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 666677777777777665543
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=2.3e-13 Score=113.00 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=67.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCC---Cccccccccccccccc-----cCCCCCCCCChHHHHH-H
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG---LLRCSKSCRLRWTNYL-----RPGIKRGNFTDQEEKM-I 78 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~---~~Rt~kQCR~RW~n~L-----~P~ikkg~WT~EED~~-L 78 (351)
.+...++++||+|||+.|+++|++||.++|..|+..++ .+||..+|++||.|++ +|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678999999999999999999999889999998652 3899999999999998 6899999888777655 7
Q ss_pred HHHHHHhC
Q 018746 79 IHLQALLG 86 (351)
Q Consensus 79 l~lv~k~G 86 (351)
++|...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=3.8e-13 Score=107.33 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccccc----CCCccccccccccccccc-----cCCCCCC-CCChHHHHHHHHHHHH
Q 018746 15 GPWTPEEDIILVSYIQEHGPGNWRAVPTN----TGLLRCSKSCRLRWTNYL-----RPGIKRG-NFTDQEEKMIIHLQAL 84 (351)
Q Consensus 15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~----l~~~Rt~kQCR~RW~n~L-----~P~ikkg-~WT~EED~~Ll~lv~k 84 (351)
++||+|||+.|+++|++||.++|..|+.. ++ +||+.+|++||.|++ +|.++++ +...+...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999985 66 899999999999988 6776655 6777777888888754
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=8.3e-13 Score=102.99 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 63 PGIKRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 63 P~ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
+.+.+++||.+||++|++++.+|| ++|.+||.+|||||.+||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 689999999999999999999998764
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-13 Score=105.84 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=47.8
Q ss_pred ccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCC
Q 018746 6 CCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKR 67 (351)
Q Consensus 6 cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikk 67 (351)
-...|.+++++||+|||++|+++|++||. +|..||+.| +|++.||+.||.. |....+.
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 45678999999999999999999999995 699999998 6999999999985 5444443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=103.01 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=45.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHH
Q 018746 64 GIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTH 111 (351)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~ 111 (351)
...+++||.|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999865
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=103.46 Aligned_cols=52 Identities=21% Similarity=0.446 Sum_probs=48.5
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccc
Q 018746 7 CDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNY 60 (351)
Q Consensus 7 c~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~ 60 (351)
+.+....+++||+|||++|+++|++|| ++|..||.+|+ +|++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 355677899999999999999999999 89999999999 89999999999998
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=5.5e-13 Score=107.23 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=50.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccC
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (351)
.-|.+++|+||+|||++|+++|..||. +|..||..|+ +|+..||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 457899999999999999999999995 8999999999 99999999999999863
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-12 Score=102.11 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=50.2
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCcccccccccccccccc
Q 018746 7 CDKIGIKKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 7 c~Kp~ikKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (351)
.+++.+.+++||+|||++|+++|+.|| +.+|..||..|| +|+..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 467788999999999999999999999 358999999999 9999999999998764
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.23 E-value=1.5e-11 Score=98.12 Aligned_cols=48 Identities=25% Similarity=0.462 Sum_probs=44.5
Q ss_pred CCCChHHHHHHHHHHHHhCC-cHHHHHHH----cCCCCHHHHHHHHHHHhhHH
Q 018746 68 GNFTDQEEKMIIHLQALLGN-RWAAIASY----LRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 68 g~WT~EED~~Ll~lv~k~G~-~W~~IAk~----LpgRT~~qcKnRW~~~Lkkk 115 (351)
++||.|||+.|+++|.+||. +|..|++. |++||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999996 99999996 89999999999999988754
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=1.8e-11 Score=92.64 Aligned_cols=49 Identities=22% Similarity=0.486 Sum_probs=45.1
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcHHHHH---HHcCCCCHHHHHHHHHHHhhH
Q 018746 66 KRGNFTDQEEKMIIHLQALLGNRWAAIA---SYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G~~W~~IA---k~LpgRT~~qcKnRW~~~Lkk 114 (351)
++.+||+|||+.|+++|++||.+|..|+ .++++||..+||+||+++.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 467899999999999987654
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.18 E-value=2.2e-11 Score=103.42 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=49.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhH
Q 018746 61 LRPGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 61 L~P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkk 114 (351)
+.+..++++||.|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 556778999999999999999999996 999999985 899999999999998875
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.17 E-value=9.1e-12 Score=116.40 Aligned_cols=55 Identities=25% Similarity=0.531 Sum_probs=48.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCc------HHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746 63 PGIKRGNFTDQEEKMIIHLQALLGNR------WAAIASYLRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 63 P~ikkg~WT~EED~~Ll~lv~k~G~~------W~~IAk~LpgRT~~qcKnRW~~~Lkkklk 117 (351)
+.+++++||+|||++|+++|.+||++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999975 99999999999999999999999999875
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.16 E-value=3.4e-11 Score=99.97 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=47.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhH
Q 018746 63 PGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 63 P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkk 114 (351)
+..++++||.|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999996 999999965 899999999999998865
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.15 E-value=5.5e-11 Score=96.68 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 66 KRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
.+++||.|||++|++++.+|| ++|.+||.+|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999977663
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.12 E-value=1.1e-10 Score=99.39 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=47.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCC-cHHHHHHHc----CCCCHHHHHHHHHHHhhHH
Q 018746 63 PGIKRGNFTDQEEKMIIHLQALLGN-RWAAIASYL----RQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 63 P~ikkg~WT~EED~~Ll~lv~k~G~-~W~~IAk~L----pgRT~~qcKnRW~~~Lkkk 115 (351)
...++++||.|||+.|+++|++||. +|..|++.+ ++||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999996 999999974 8999999999999988653
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.3e-09 Score=81.66 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
..++||++|++++++++.+||++|..||.+||+||..||+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999998644
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=87.63 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=59.1
Q ss_pred cccccccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHc-----CCCCHHHHHHHHHHHhhHHHHHh
Q 018746 50 SKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYL-----RQRTDNDIKNYWNTHLKKKVKKL 119 (351)
Q Consensus 50 ~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~L-----pgRT~~qcKnRW~~~LkkklkK~ 119 (351)
+.=+.++|.++|.+ .+||.||+..|++|+.+||.+|..|+..+ ++||..++|+||+.+.++.++..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45678999999976 89999999999999999999999999999 58999999999999888766554
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.88 E-value=2.1e-10 Score=93.28 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=43.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCccccccccccccccc
Q 018746 13 KKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 13 kKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (351)
.+++||+|||++|++++..|+ +.+|..||..|| +|+..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 378999999999999999997 467999999999 999999999999874
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=9.8e-09 Score=79.67 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 64 GIKRGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
..+.+.||.|||++|.+++.+|+ ++|.+||.+| |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 6799999998 99999999999876544
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.71 E-value=1.9e-08 Score=93.38 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=46.2
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
..++||+||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987766
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.63 E-value=7.3e-09 Score=78.35 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=43.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc---ccCCCcccccccccccccccc
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVP---TNTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA---~~l~~~Rt~kQCR~RW~n~L~ 62 (351)
-.+.+||+|||+.|++.|++||. +|..|+ ..+. +|+...+++||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36899999999999999999996 999999 4554 8999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=9.5e-09 Score=76.88 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746 8 DKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 8 ~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (351)
++..-..++||+||++++++++..|| .+|..||..|+ +|+..||..+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 44556779999999999999999999 69999999999 999999999997643
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.49 E-value=9.7e-08 Score=97.16 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 68 GNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 68 g~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.+||++|-.++++++.+||.+|..||++++.||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999865443
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=2.2e-07 Score=72.47 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHHHhC----CcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 67 RGNFTDQEEKMIIHLQALLG----NRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G----~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
...||.+|+++|.+++..|+ .+|.+||.++||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999998 469999999999999999999997643
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=3.1e-08 Score=76.83 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=44.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhC---CCCCccccccCCCccccccccccccccccC
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHG---PGNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G---~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (351)
..+++.||.|||++|.+++..|+ ++.|..||..++ |+..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 45688999999999999999998 457999999974 9999999999876543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.31 E-value=5.9e-07 Score=67.06 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-HHHHHH-HcCCCCHHHHHHHHHHHhh
Q 018746 67 RGNFTDQEEKMIIHLQALL--------GNR-WAAIAS-YLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~--------G~~-W~~IAk-~LpgRT~~qcKnRW~~~Lk 113 (351)
+.+||.|||..|++.|.+| |+. |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.29 E-value=1.1e-07 Score=71.02 Aligned_cols=48 Identities=23% Similarity=0.491 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCccccc-cCCCcccccccccccccccc
Q 018746 14 KGPWTPEEDIILVSYIQEH--------GPGNWRAVPT-NTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~--------G~~nW~~IA~-~l~~~Rt~kQCR~RW~n~L~ 62 (351)
+.+||+|||++|+++|.+| |..-|..++. .++ .++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4446999999 677 9999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.15 E-value=3.5e-07 Score=71.27 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCccccccCCCcccccccccccccccc
Q 018746 14 KGPWTPEEDIILVSYIQEHGP---GNWRAVPTNTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (351)
...||.||+++|.+++..|+. ++|..||..+| +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999974 57999999999 8999999999998754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=6.2e-07 Score=83.32 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=45.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccccccccccccccc
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (351)
.....+||+||++++++++.+|| ++|..||+.++ +|+..||+.+|+++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999999 69999999999 9999999999998864
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=6.5e-06 Score=61.90 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=44.8
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHH-cCCCCHHHHHHHHHH
Q 018746 62 RPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASY-LRQRTDNDIKNYWNT 110 (351)
Q Consensus 62 ~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~-LpgRT~~qcKnRW~~ 110 (351)
.|.++..+||+||-++..+.+.+||.+|..|+++ |++||..+|..+|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3667788999999999999999999999999995 899999999998874
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.03 E-value=1.6e-05 Score=76.88 Aligned_cols=104 Identities=14% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc-------ccccc---------------------------
Q 018746 15 GPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL-------RWTNY--------------------------- 60 (351)
Q Consensus 15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n~--------------------------- 60 (351)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 788766532 22110
Q ss_pred ----------------ccCCCCCCCCChHHHHHHHHHHHHhCC----cHHHHH---H---------HcCCCCHHHHHHHH
Q 018746 61 ----------------LRPGIKRGNFTDQEEKMIIHLQALLGN----RWAAIA---S---------YLRQRTDNDIKNYW 108 (351)
Q Consensus 61 ----------------L~P~ikkg~WT~EED~~Ll~lv~k~G~----~W~~IA---k---------~LpgRT~~qcKnRW 108 (351)
..+..+...||++||..|+.++.+||- .|..|. + ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 011224568999999999999999994 599996 2 55689999999999
Q ss_pred HHHhhHHHHHh
Q 018746 109 NTHLKKKVKKL 119 (351)
Q Consensus 109 ~~~LkkklkK~ 119 (351)
+.+++-..+..
T Consensus 270 ~tLi~~iekE~ 280 (304)
T 1ofc_X 270 NTLITLIEREN 280 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99887654443
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.95 E-value=1.4e-05 Score=64.60 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHHHHhCC---cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 67 RGNFTDQEEKMIIHLQALLGN---RWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~---~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
---||.|||+.||...++-|. .|..||+.|.+|+.+||++||+.+++-
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 347999999999999999986 799999999999999999999987664
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.78 E-value=4.8e-05 Score=61.74 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=50.7
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcC-----CCCHHHHHHHHHHHhhHHHHH
Q 018746 55 LRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLR-----QRTDNDIKNYWNTHLKKKVKK 118 (351)
Q Consensus 55 ~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~Lp-----gRT~~qcKnRW~~~LkkklkK 118 (351)
+.|..+|. ...||.||...|++|+.+|+-+|..|+..+. .||-.++|.||+.+.++.++.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555664 3689999999999999999999999999874 799999999999987776543
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=7.7e-06 Score=63.71 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCccccccCCCcccccccccccc
Q 018746 14 KGPWTPEEDIILVSYIQEHGP---GNWRAVPTNTGLLRCSKSCRLRWT 58 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~---~nW~~IA~~l~~~Rt~kQCR~RW~ 58 (351)
...||.||+++|.+++..|+. ..|.+||..+| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 568999999999999999974 38999999999 999999999985
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=3.9e-06 Score=65.37 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHHHHHHhCC----cHHHHHHHcCCCCHHHHHHHHH
Q 018746 67 RGNFTDQEEKMIIHLQALLGN----RWAAIASYLRQRTDNDIKNYWN 109 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~----~W~~IAk~LpgRT~~qcKnRW~ 109 (351)
..+||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999875
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.80 E-value=7.4e-06 Score=62.89 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHhCC---cHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 69 NFTDQEEKMIIHLQALLGN---RWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 69 ~WT~EED~~Ll~lv~k~G~---~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
-||.|||..|+..+++-|. .|+.||..| +|+.+||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999987654
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.57 E-value=0.00013 Score=55.99 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHH-HcCCCCHHHHHHHHHH
Q 018746 67 RGNFTDQEEKMIIHLQALLGNRWAAIAS-YLRQRTDNDIKNYWNT 110 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk-~LpgRT~~qcKnRW~~ 110 (351)
..+||++|-.+..+.+.+||.+|..|++ .||+||..+|..+|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999873
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.56 E-value=0.0001 Score=59.59 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHH
Q 018746 67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNT 110 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~ 110 (351)
...||++|..+..+.+.+||.+|..|+..||+||..+|..+|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998874
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=5.7e-05 Score=56.71 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=43.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc-cCCCccccccccccccc
Q 018746 9 KIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPT-NTGLLRCSKSCRLRWTN 59 (351)
Q Consensus 9 Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n 59 (351)
.|.++...||+||-++..+.+..|| .+|..|++ .++ .|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 4678889999999999999999999 59999998 588 8999999887754
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.22 E-value=8.5e-05 Score=75.70 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=44.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccc
Q 018746 11 GIKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 11 ~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (351)
.....+||.||-+++++++.+|| ++|..|+..++ +|+..||+..|.++-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34578999999999999999999 69999999999 999999999987653
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.17 E-value=0.0004 Score=54.50 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHHHhC----------CcHHHHHHHcC----CCCHHHHHHHHHHHhhHHHHHh
Q 018746 67 RGNFTDQEEKMIIHLQALLG----------NRWAAIASYLR----QRTDNDIKNYWNTHLKKKVKKL 119 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G----------~~W~~IAk~Lp----gRT~~qcKnRW~~~LkkklkK~ 119 (351)
...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+. +++.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~-Yk~~ 69 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE-FKKA 69 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHH
Confidence 46899999999999997632 14999999874 79999999999985544 5444
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.04 E-value=0.00014 Score=59.08 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=43.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccCC----Ccccccccccccccccc
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG----LLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~ 62 (351)
+...+||.||+..|++++++|+ ..|..|+..+. .+|+..+.+.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999 69999998883 26999999999987654
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.72 E-value=0.00047 Score=55.71 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=46.6
Q ss_pred CCCccCCCCCc-----cCCCCHHHHHHHHHHHHHhCC--CCCccccccCCCccccccccccccccc
Q 018746 3 RPPCCDKIGIK-----KGPWTPEEDIILVSYIQEHGP--GNWRAVPTNTGLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 3 R~~cc~Kp~ik-----Kg~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~L 61 (351)
++-|.....++ --.||.|||..|+...++.|. ..|..||+.++ +|++.|+++||+.++
T Consensus 17 ~s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 17 ATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred CceeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 44565555443 235999999999999999985 47999999998 899999999998643
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.68 E-value=0.0001 Score=57.91 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCccccccC---CCccccccccccccccc
Q 018746 13 KKGPWTPEEDIILVSYIQEHGP---------GNWRAVPTNT---GLLRCSKSCRLRWTNYL 61 (351)
Q Consensus 13 kKg~WT~EEDe~L~~lV~~~G~---------~nW~~IA~~l---~~~Rt~kQCR~RW~n~L 61 (351)
+...||.+|-..|++++..+.. ..|..||..| |..|++.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999876421 2699999775 46799999999998864
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.66 E-value=0.0052 Score=60.81 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccc-------ccccc---------------------------
Q 018746 15 GPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRL-------RWTNY--------------------------- 60 (351)
Q Consensus 15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~-------RW~n~--------------------------- 60 (351)
+.||.-+=..++.++.+||..+-..||..|+.+++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888899999999998889999998853455544431 11110
Q ss_pred -------------c----cCC-CCCCCCChHHHHHHHHHHHHhC----CcHHHHHHH------------cCCCCHHHHHH
Q 018746 61 -------------L----RPG-IKRGNFTDQEEKMIIHLQALLG----NRWAAIASY------------LRQRTDNDIKN 106 (351)
Q Consensus 61 -------------L----~P~-ikkg~WT~EED~~Ll~lv~k~G----~~W~~IAk~------------LpgRT~~qcKn 106 (351)
| .+. -+...||++||..||.++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 1 011 1345799999999999999999 459999443 45699999999
Q ss_pred HHHHHhhHHH
Q 018746 107 YWNTHLKKKV 116 (351)
Q Consensus 107 RW~~~Lkkkl 116 (351)
|...+++-..
T Consensus 284 Rc~tLi~~Ie 293 (374)
T 2y9y_A 284 RGNTLLQCLE 293 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.59 E-value=0.00058 Score=55.15 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCccccccccccccc
Q 018746 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTN 59 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n 59 (351)
...||+||.+++.+.+..|| .+|..|+..++ .|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 69999999998 9999999987753
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.50 E-value=0.0008 Score=51.48 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=40.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccc-cCCCccccccccccccc
Q 018746 13 KKGPWTPEEDIILVSYIQEHGPGNWRAVPT-NTGLLRCSKSCRLRWTN 59 (351)
Q Consensus 13 kKg~WT~EEDe~L~~lV~~~G~~nW~~IA~-~l~~~Rt~kQCR~RW~n 59 (351)
....||+||-.+..+.+..|| .+|..|+. .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 456899999999999999999 59999999 488 9999999887764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.33 E-value=0.00061 Score=52.31 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCCccccccCCCcccccccccccccccc
Q 018746 15 GPWTPEEDIILVSYIQEHGP--GNWRAVPTNTGLLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 15 g~WT~EEDe~L~~lV~~~G~--~nW~~IA~~l~~~Rt~kQCR~RW~n~L~ 62 (351)
-.||.|||..|+..+++.|+ .-|..||..+ +|++.|+.+||...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999985 4799999888 4999999999988653
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.52 E-value=0.052 Score=48.50 Aligned_cols=38 Identities=32% Similarity=0.526 Sum_probs=31.3
Q ss_pred CccCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccc
Q 018746 5 PCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRAVPT 42 (351)
Q Consensus 5 ~cc~Kp~ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~ 42 (351)
|++.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44555555566799999999999999999999999864
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.19 E-value=0.31 Score=36.80 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCc---HHHHHHHc--CCCCHHHHHHHHHHHh
Q 018746 65 IKRGNFTDQEEKMIIHLQALLGNR---WAAIASYL--RQRTDNDIKNYWNTHL 112 (351)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~k~G~~---W~~IAk~L--pgRT~~qcKnRW~~~L 112 (351)
..+-.||+|..+..+++|.++|.. +..|-+.| +|.|..+|+.+.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999954 88999987 4899999999877543
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.89 E-value=0.029 Score=45.44 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=41.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccccCC----Ccccccccccccccccc
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTG----LLRCSKSCRLRWTNYLR 62 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~----~~Rt~kQCR~RW~n~L~ 62 (351)
++...||.||...|.+++++|. -.|-.|+.... ..|+..+.++||..+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999 69999987653 25899999999987643
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.18 E-value=0.18 Score=48.69 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.+.||..+...++.++.+|| ..|..||..|+|+|..+|+.++..+..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999 5799999999999999998887766543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.60 E-value=0.28 Score=43.62 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=43.4
Q ss_pred CCCCCChHHHHHHHHHHHHhC---CcHHHHHHH--cCCCCHHHHHHHHHHHhhHHHH
Q 018746 66 KRGNFTDQEEKMIIHLQALLG---NRWAAIASY--LRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G---~~W~~IAk~--LpgRT~~qcKnRW~~~Lkkklk 117 (351)
....||+.|-..|+.++.+|| .+|..|+.. |.+++...|+.++..++..-.+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 579999875 7899999999988877665433
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.01 E-value=0.43 Score=45.19 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccc
Q 018746 15 GPWTPEEDIILVSYIQEHGPGNWRAVPT 42 (351)
Q Consensus 15 g~WT~EEDe~L~~lV~~~G~~nW~~IA~ 42 (351)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999964
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=77.60 E-value=0.81 Score=34.49 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=34.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCC--CCccccccCCC-cccccccccccccc
Q 018746 12 IKKGPWTPEEDIILVSYIQEHGPG--NWRAVPTNTGL-LRCSKSCRLRWTNY 60 (351)
Q Consensus 12 ikKg~WT~EEDe~L~~lV~~~G~~--nW~~IA~~l~~-~Rt~kQCR~RW~n~ 60 (351)
..+-.||+|..++++++|+..|.. .++.|...|+. +.|..+++-+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457789999999999999999942 14566665542 45666666554443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.47 E-value=6.4 Score=37.17 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHHHHhC---CcHHHHHHH--cCCCCHHHHHHHHHHHhhHHH
Q 018746 67 RGNFTDQEEKMIIHLQALLG---NRWAAIASY--LRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G---~~W~~IAk~--LpgRT~~qcKnRW~~~Lkkkl 116 (351)
+++||+-|-..|++.+.+|| .+|..|+.. |+.++...++.-+..++..-.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999874 789999999998887776543
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.96 E-value=20 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 73 QEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 73 EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+.+..++.++-..|-.+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566666667788999999999 88999999877665444
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.97 E-value=12 Score=30.59 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHhCC--------cHHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746 78 IIHLQALLGN--------RWAAIASYLRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 78 Ll~lv~k~G~--------~W~~IAk~LpgRT~~qcKnRW~~~Lkkklk 117 (351)
|..+|.+.|+ .|..|+..|.--....+|..|..+|-+--.
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 7777777774 699999999644488999999999888543
No 100
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=54.54 E-value=51 Score=25.86 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCccccccCCCcccc-ccccccccccc--cCCCCCCCCChHHHHHHHHHHHHhCCcHHHH
Q 018746 16 PWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCS-KSCRLRWTNYL--RPGIKRGNFTDQEEKMIIHLQALLGNRWAAI 92 (351)
Q Consensus 16 ~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~-kQCR~RW~n~L--~P~ikkg~WT~EED~~Ll~lv~k~G~~W~~I 92 (351)
..|.++-..++.++. .| ..-.+||..++..|+. .....+|..+- .........+.+++..|+.+...-.-.-.+|
T Consensus 6 ~~s~~~r~~i~~~~~-~G-~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i 83 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LN-VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDI 83 (141)
T ss_dssp CCCHHHHHHHHHHHH-TT-CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHH
T ss_pred cCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHH
Confidence 577888888887774 45 4678999988733221 11222332221 1111223578888888887733222345788
Q ss_pred HHHcCC-CCHHHHHHHHH
Q 018746 93 ASYLRQ-RTDNDIKNYWN 109 (351)
Q Consensus 93 Ak~Lpg-RT~~qcKnRW~ 109 (351)
+..|.- -+...|.....
T Consensus 84 ~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 84 RNELQLSASKRTILNVIK 101 (141)
T ss_dssp HHHTTCCSCHHHHHHHHH
T ss_pred HHHHCCCccHHHHHHHHH
Confidence 888832 56666665443
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.05 E-value=27 Score=25.15 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH----hCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 73 QEEKMIIHLQAL----LGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 73 EED~~Ll~lv~k----~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+.+..++.+.-. .|..|.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455555544 567899999999 89999999877665544
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=53.38 E-value=18 Score=35.72 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHHHHHhC-CcHHHHHHHcC-CCCHHHHHHHHHHHhh
Q 018746 67 RGNFTDQEEKMIIHLQALLG-NRWAAIASYLR-QRTDNDIKNYWNTHLK 113 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G-~~W~~IAk~Lp-gRT~~qcKnRW~~~Lk 113 (351)
.+.||.-+=..++.+..+|| ..-..||..|. ++|..+|+.+......
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 45799999999999999999 55999999997 9999999966655443
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.31 E-value=25 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------cHHHHHHHcCCCC----HHHHHHHHHHHhhHH
Q 018746 77 MIIHLQALLGN--------RWAAIASYLRQRT----DNDIKNYWNTHLKKK 115 (351)
Q Consensus 77 ~Ll~lv~k~G~--------~W~~IAk~LpgRT----~~qcKnRW~~~Lkkk 115 (351)
.|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 36677777773 6999999995322 568888888888764
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.64 E-value=22 Score=28.93 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------cHHHHHHHcCCCC----HHHHHHHHHHHhhHHH
Q 018746 77 MIIHLQALLGN--------RWAAIASYLRQRT----DNDIKNYWNTHLKKKV 116 (351)
Q Consensus 77 ~Ll~lv~k~G~--------~W~~IAk~LpgRT----~~qcKnRW~~~Lkkkl 116 (351)
+|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+--
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 37777777774 6999999985322 5788999999988843
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=51.61 E-value=40 Score=25.34 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 73 QEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 73 EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
+.+..++.++-..|-.-.+||..| |-+...|+.+....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556666666788899999999 899999999887655553
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=51.48 E-value=16 Score=30.23 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=30.9
Q ss_pred HHHHHHHhCC--------cHHHHHHHcCCCCHHHHHHHHHHHhhHHHH
Q 018746 78 IIHLQALLGN--------RWAAIASYLRQRTDNDIKNYWNTHLKKKVK 117 (351)
Q Consensus 78 Ll~lv~k~G~--------~W~~IAk~LpgRT~~qcKnRW~~~Lkkklk 117 (351)
|..+|.+.|+ .|..|+..|.--....+|..|..+|-+--.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6666666663 599999998644499999999999988543
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=48.74 E-value=28 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHhCC--------cHHHHHHHcCCCC----HHHHHHHHHHHhhHHHHH
Q 018746 77 MIIHLQALLGN--------RWAAIASYLRQRT----DNDIKNYWNTHLKKKVKK 118 (351)
Q Consensus 77 ~Ll~lv~k~G~--------~W~~IAk~LpgRT----~~qcKnRW~~~LkkklkK 118 (351)
+|..+|.+.|+ .|.+|+..|.--+ ...+|..|..+|-+--..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 36677777774 6999999985322 568899999999885444
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.11 E-value=29 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHH----HhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 74 EEKMIIHLQA----LLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 74 ED~~Ll~lv~----k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.+..++.+.- ..|..+.+||..| |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444555544 2467899999999 89999999887654443
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.00 E-value=31 Score=28.31 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------cHHHHHHHcCCCC----HHHHHHHHHHHhhHHH
Q 018746 77 MIIHLQALLGN--------RWAAIASYLRQRT----DNDIKNYWNTHLKKKV 116 (351)
Q Consensus 77 ~Ll~lv~k~G~--------~W~~IAk~LpgRT----~~qcKnRW~~~Lkkkl 116 (351)
+|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+--
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE 97 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYN 97 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 36677777774 6999999985321 4688999998888743
No 110
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.76 E-value=4.7 Score=33.59 Aligned_cols=46 Identities=9% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCccccccCCCcccc----ccccccccccccCCCCCCCCChHHHHHHHHHHH
Q 018746 35 GNWRAVPTNTGLLRCS----KSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQA 83 (351)
Q Consensus 35 ~nW~~IA~~l~~~Rt~----kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~ 83 (351)
+.|..|+..|++..+. ...+..|.++|.|= ..++.+|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 4799999998865432 45688899998752 2477888888876654
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=43.01 E-value=40 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCC--------cHHHHHHHcC--CC---CHHHHHHHHHHHhhHHH
Q 018746 76 KMIIHLQALLGN--------RWAAIASYLR--QR---TDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 76 ~~Ll~lv~k~G~--------~W~~IAk~Lp--gR---T~~qcKnRW~~~Lkkkl 116 (351)
-+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-+--
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 347777777774 6999999984 22 26789999999988854
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.91 E-value=21 Score=27.79 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHHHHhC--------CcHHHHHHHcCCC----CHHHHHHHHHHHhhH
Q 018746 78 IIHLQALLG--------NRWAAIASYLRQR----TDNDIKNYWNTHLKK 114 (351)
Q Consensus 78 Ll~lv~k~G--------~~W~~IAk~LpgR----T~~qcKnRW~~~Lkk 114 (351)
|..+|.+.| +.|.+|+..|.-- ....+|..|..+|-+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 667777766 3699999998421 256888888887765
No 113
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.10 E-value=19 Score=31.73 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=19.3
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhC
Q 018746 10 IGIKKGPWTPEEDIILV--------SYIQEHG 33 (351)
Q Consensus 10 p~ikKg~WT~EEDe~L~--------~lV~~~G 33 (351)
|.-.+|-||+|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 34568999999999884 5788887
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.99 E-value=3.9 Score=33.48 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccccccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRCSKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P 63 (351)
+|..+|.+.|. +.|..|+..|++.. +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56777777763 47999999988544 67778888887754
No 115
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.98 E-value=5.9 Score=32.48 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccc---cccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRC---SKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (351)
+|..+|.+.|. +.|..|+..|++..+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777887763 479999999885443 34567777777754
No 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.94 E-value=48 Score=27.99 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC--------cHHHHHHHcCC--C---CHHHHHHHHHHHhhHHH
Q 018746 77 MIIHLQALLGN--------RWAAIASYLRQ--R---TDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 77 ~Ll~lv~k~G~--------~W~~IAk~Lpg--R---T~~qcKnRW~~~Lkkkl 116 (351)
+|..+|.+.|+ .|.+|+..|.- . ....+|..|..+|-+--
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 36777777774 69999999842 1 25789999999888853
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=34.85 E-value=79 Score=22.45 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 70 FTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 70 WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
+|+.|- .++.++ ..|-.-.+||..| |-+...|+.+....++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 445444 444555 5677899999999 8899999887665443
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.53 E-value=6.2 Score=32.74 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccc----cccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRC----SKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P 63 (351)
+|..+|.+.|. +.|..|+..|++..+ ..+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 479999999885443 34567778877765
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.34 E-value=47 Score=27.71 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHHH
Q 018746 72 DQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 72 ~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkkl 116 (351)
++-|.+|+++..+.| -.|.+||+.+ |-+...|+.|++.+.+..+
T Consensus 2 D~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 356788888888777 4699999999 9999999999987665544
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.29 E-value=83 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=23.6
Q ss_pred hCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 85 LGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 85 ~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.|-...+||..| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 88999999987765554
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.55 E-value=1e+02 Score=23.44 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 66 KRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 66 kkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
.....|..|-+.|.-++ .|..-.+||..| +-+...|+.+...+++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34467877776665444 788899999999 8899999988776443
No 122
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.37 E-value=91 Score=23.67 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 69 NFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 69 ~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 46666655544 45 7788899999999 889999998766543
No 123
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=33.21 E-value=6.7 Score=32.44 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccc---cccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRC---SKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (351)
+|..+|.++|. +.|.+|+..|++..+ +.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56667777663 479999998885542 34567777777653
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.47 E-value=90 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 69 NFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 69 ~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
.+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+....+
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 566666655544 4 5677899999999 889999988776544
No 125
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.20 E-value=70 Score=25.44 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHH
Q 018746 71 TDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKN 106 (351)
Q Consensus 71 T~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKn 106 (351)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56677788888899999999999999 777777655
No 126
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.99 E-value=90 Score=23.01 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 69 NFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 69 ~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
..|+.|-+.| .++ ..|..-.+||..| +-+...|+.+....+
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4666665554 444 5778899999999 889999998766543
No 127
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.08 E-value=8 Score=31.93 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccc---cccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRC---SKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt---~kQCR~RW~n~L~P 63 (351)
+|..+|.+.|. +.|..|+..|++..+ +.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777763 479999999885443 24567777777653
No 128
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.06 E-value=94 Score=23.07 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHHH----hCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 74 EEKMIIHLQAL----LGNRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 74 ED~~Ll~lv~k----~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
.+..++.+.-. .|-.+.+||..| |-+...|+.+-...++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34445555443 467899999999 8999999987655443
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.89 E-value=1.1e+02 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=24.6
Q ss_pred HhCCcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 84 LLGNRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 84 k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
..|-...+||..| |-+...|+.+....+++-
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3466799999999 889999999887655553
No 130
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.87 E-value=64 Score=26.60 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=50.5
Q ss_pred CCccCCCCHHHH--HHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCCCCCCChHHHHHHHHHHHHhCC-
Q 018746 11 GIKKGPWTPEED--IILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGN- 87 (351)
Q Consensus 11 ~ikKg~WT~EED--e~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll~lv~k~G~- 87 (351)
+.-+.+|.+.+. +.|.++.+..|. ....|+.. + +|.- + --+|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l-----------D------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL-----------D------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC-----------C------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec-----------c------------HHHHHHHHHHcCcH
Confidence 445678988775 457777777774 44444432 2 1211 1 1237777778774
Q ss_pred -------cHHHHHHHcC--CC---CHHHHHHHHHHHhhHH
Q 018746 88 -------RWAAIASYLR--QR---TDNDIKNYWNTHLKKK 115 (351)
Q Consensus 88 -------~W~~IAk~Lp--gR---T~~qcKnRW~~~Lkkk 115 (351)
.|..|+..|. .- ....+|..|..+|-+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 6999999984 21 2568899998888774
No 131
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.83 E-value=2.1e+02 Score=23.13 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=47.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccc-ccccccccc--cccCCCC----CCCCChHHHHHHHHHHHHhC
Q 018746 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCS-KSCRLRWTN--YLRPGIK----RGNFTDQEEKMIIHLQALLG 86 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~-kQCR~RW~n--~L~P~ik----kg~WT~EED~~Ll~lv~k~G 86 (351)
..+.|.++-..++.++. .| ....+||..++..++. .....||.. .+.+... ....+.++.+.|++++.+..
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 100 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP 100 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc
Confidence 34688898888888884 45 4778999988743221 112223322 1222211 23578888888888887653
Q ss_pred -CcHHHHHHHc
Q 018746 87 -NRWAAIASYL 96 (351)
Q Consensus 87 -~~W~~IAk~L 96 (351)
-.-.+|+..|
T Consensus 101 ~~s~~~i~~~l 111 (159)
T 2k27_A 101 TMFAWEIRDRL 111 (159)
T ss_dssp SSCHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 2234565555
No 132
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=30.64 E-value=99 Score=21.76 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHH
Q 018746 72 DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDI 104 (351)
Q Consensus 72 ~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qc 104 (351)
.-|...|.+++..++++..+.|+.| |=+...+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL 49 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNL 49 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHH
Confidence 4577888999999999999999999 4444433
No 133
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.33 E-value=32 Score=27.35 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHhC--------CcHHHHHHHcCC-C----CHHHHHHHHHHHhhHHH
Q 018746 77 MIIHLQALLG--------NRWAAIASYLRQ-R----TDNDIKNYWNTHLKKKV 116 (351)
Q Consensus 77 ~Ll~lv~k~G--------~~W~~IAk~Lpg-R----T~~qcKnRW~~~Lkkkl 116 (351)
.|..+|.+.| +.|.+|+..|.- . ....+|..|..+|-+--
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3666777776 369999999852 1 24689999999888743
No 134
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.43 E-value=1.4e+02 Score=25.13 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=26.1
Q ss_pred HHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 78 IIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 78 Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
++.+.-..|-...+||..| |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3333334467799999999 88999998887765544
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.84 E-value=81 Score=25.63 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCcHHHHHHHcCCCCHHHHHH
Q 018746 77 MIIHLQALLGNRWAAIASYLRQRTDNDIKN 106 (351)
Q Consensus 77 ~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKn 106 (351)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 677766654
No 136
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.67 E-value=1.6e+02 Score=23.47 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=48.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccccCCCcccc-ccccccccc--cccCCCC----CCCCChHHHHHHHHHHHHhC
Q 018746 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCS-KSCRLRWTN--YLRPGIK----RGNFTDQEEKMIIHLQALLG 86 (351)
Q Consensus 14 Kg~WT~EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~-kQCR~RW~n--~L~P~ik----kg~WT~EED~~Ll~lv~k~G 86 (351)
....+.|+-..++.++. .| ....+||..++..++. .....+|.. .+.+... ....++++...|++++.+..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 107 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNP 107 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 45789999888888884 45 4678999988843221 111223322 1222221 23478888888888887654
Q ss_pred -CcHHHHHHHc
Q 018746 87 -NRWAAIASYL 96 (351)
Q Consensus 87 -~~W~~IAk~L 96 (351)
-.-..|+..|
T Consensus 108 ~~s~~~i~~~l 118 (149)
T 1k78_A 108 TMFAWEIRDRL 118 (149)
T ss_dssp TCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 2234566655
No 137
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.41 E-value=73 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHH
Q 018746 75 EKMIIHLQALLGNRWAAIASYLRQRTDNDIKN 106 (351)
Q Consensus 75 D~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKn 106 (351)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3457777889999999999999 677776654
No 138
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.75 E-value=1.9e+02 Score=22.79 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 74 EEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 74 ED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
.+..++.++-..|-...+||..| |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666666788899999999 88999999887765444
No 139
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.46 E-value=24 Score=29.87 Aligned_cols=40 Identities=25% Similarity=0.505 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCCccccccCCCccc----cccccccccccccC
Q 018746 24 ILVSYIQEHGP-------GNWRAVPTNTGLLRC----SKSCRLRWTNYLRP 63 (351)
Q Consensus 24 ~L~~lV~~~G~-------~nW~~IA~~l~~~Rt----~kQCR~RW~n~L~P 63 (351)
+|..+|.+.|. +.|..|+..|++..+ +.+.+..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 45666776663 479999999885442 34678888888865
No 140
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.38 E-value=1.4e+02 Score=19.96 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhh
Q 018746 75 EKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLK 113 (351)
Q Consensus 75 D~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lk 113 (351)
+..++.+ -..|-.-.+||..| |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4455566 35677789999999 8899999987765443
No 141
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.98 E-value=2.3e+02 Score=22.60 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHH
Q 018746 67 RGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYW 108 (351)
Q Consensus 67 kg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW 108 (351)
....+.++-..++.++. -|..-.+||+.| |.+...|....
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~ 69 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKIL 69 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34688999888988884 687889999999 77777776543
No 142
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.48 E-value=1.3e+02 Score=25.52 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 72 DQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 72 ~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
++-|..|+.++.+.| -.+.+||+.+ |-+...|+.|++.+.+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 456777888888777 4699999999 789999999987755543
No 143
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.46 E-value=1.5e+02 Score=23.88 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 72 DQEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 72 ~EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
++-|..|+.+....| -.+.+||+.+ |-+...|+.+.+.+.+..
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 345667777777766 4699999999 789999999888765543
No 144
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.38 E-value=12 Score=31.46 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCccccccCCCccccccccccccccccCCCC
Q 018746 20 EEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIK 66 (351)
Q Consensus 20 EEDe~L~~lV~~~G~~nW~~IA~~l~~~Rt~kQCR~RW~n~L~P~ik 66 (351)
+-|.+|+.++++.+.-.|.+||+.++ -+...|+.|+.+....++-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 56889999999999889999999988 6778888888776555443
No 145
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.04 E-value=1.2e+02 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHH
Q 018746 72 DQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKN 106 (351)
Q Consensus 72 ~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKn 106 (351)
.-|...|.+++.+++++..+.|+.| |=+...+..
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 4577888899999999999999999 555554443
No 146
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.95 E-value=77 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHH
Q 018746 64 GIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKN 106 (351)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKn 106 (351)
.+-...=|++ .|..+....|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3333344444 46666788999999999999 677776654
No 147
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.79 E-value=1.2e+02 Score=22.63 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHh
Q 018746 69 NFTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHL 112 (351)
Q Consensus 69 ~WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~L 112 (351)
..|+.|-+.| .++ ..|..-.+||..| |-+...|+.+....+
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNIL 69 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4566665555 444 5677889999999 889999998766533
No 148
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=22.27 E-value=8.6 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=13.1
Q ss_pred cccHHHHHHHHhhhh
Q 018746 200 ASSTENIAKLLKGWT 214 (351)
Q Consensus 200 ass~eni~rll~~w~ 214 (351)
|.+.+|+++|..||+
T Consensus 16 At~~~NL~~my~GW~ 30 (33)
T 1w1n_A 16 ATSIERLCQHYIGWC 30 (33)
T ss_dssp HHHHHHHHTTSCSCC
T ss_pred hcCHHHHHHHhhhcc
Confidence 567899999999997
No 149
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.09 E-value=1.7e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHHHcCCCCHHHHHHHHHHHhhHH
Q 018746 73 QEEKMIIHLQALLG-NRWAAIASYLRQRTDNDIKNYWNTHLKKK 115 (351)
Q Consensus 73 EED~~Ll~lv~k~G-~~W~~IAk~LpgRT~~qcKnRW~~~Lkkk 115 (351)
+-|..|+.+..+.| -.+.+||+.+ |-+...|..|.+.+.+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 44667777777766 4699999999 889999999887765543
No 150
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.56 E-value=2.9e+02 Score=21.83 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHHHcCCCCHHHHHHHHHHHhhH
Q 018746 70 FTDQEEKMIIHLQALLGNRWAAIASYLRQRTDNDIKNYWNTHLKK 114 (351)
Q Consensus 70 WT~EED~~Ll~lv~k~G~~W~~IAk~LpgRT~~qcKnRW~~~Lkk 114 (351)
+++. +..++.++-..|-.-.+||..+ |-+...|+.+....+++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4556666667788899999999 89999999887765543
Done!