BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018749
         (351 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSC|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSE|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSF|B Chain B, Improved Model Of Plant Photosystem I
          Length = 734

 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 99  SLWLSNSAYIYLSVSFIQMLKALMPVAVYSIGVTFK-------------KESFKS--DTM 143
           SLWL++ A+ +L+++F+ ++  LM    + IG + K                 K   DT+
Sbjct: 267 SLWLTDVAHHHLAIAFLFLIGGLMYRTNFGIGHSIKYILEAHIPPGGRLGRGHKGLYDTI 326

Query: 144 CNMVSISVGVAIAAYG 159
            N +   +G+A+A+ G
Sbjct: 327 NNSIHFQLGLALASLG 342


>pdb|3LW5|B Chain B, Improved Model Of Plant Photosystem I
          Length = 733

 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 99  SLWLSNSAYIYLSVSFIQMLKALMPVAVYSIGVTFK-------------KESFKS--DTM 143
           SLWL++ A+ +L+++F+ ++  LM    + IG + K                 K   DT+
Sbjct: 266 SLWLTDVAHHHLAIAFLFLIGGLMYRTNFGIGHSIKYILEAHIPPGGRLGRGHKGLYDTI 325

Query: 144 CNMVSISVGVAIAAYG 159
            N +   +G+A+A+ G
Sbjct: 326 NNSIHFQLGLALASLG 341


>pdb|2O01|B Chain B, The Structure Of A Plant Photosystem I Supercomplex At 3.4
           Angstrom Resolution
          Length = 732

 Score = 31.6 bits (70), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 99  SLWLSNSAYIYLSVSFIQMLKALMPVAVYSIGVTFK-------------KESFKS--DTM 143
           SLWL++ A+ +L+++F+ ++  LM    + IG + K                 K   DT+
Sbjct: 266 SLWLTDVAHHHLAIAFLFLIGGLMYRTNFGIGHSIKYILEAHIPPGGRLGRGHKGLYDTI 325

Query: 144 CNMVSISVGVAIAAYG 159
            N +   +G+A+A+ G
Sbjct: 326 NNSIHFQLGLALASLG 341


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,984,605
Number of Sequences: 62578
Number of extensions: 308028
Number of successful extensions: 713
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 3
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)