Query 018749
Match_columns 351
No_of_seqs 160 out of 1531
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 4.5E-08 1.5E-12 76.4 6.5 67 242-308 37-104 (137)
2 3b5d_A Multidrug transporter E 98.4 5.2E-07 1.8E-11 67.9 7.1 72 89-160 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 5.2E-07 1.8E-11 70.4 5.3 71 89-159 33-104 (137)
4 3b5d_A Multidrug transporter E 98.1 1.4E-05 4.9E-10 59.9 8.7 60 249-308 44-104 (110)
5 2zxe_G FXYD10, phospholemman-l 44.5 13 0.00045 24.6 2.1 19 292-310 25-43 (74)
6 3l1l_A Arginine/agmatine antip 44.0 35 0.0012 31.0 5.9 22 290-311 409-430 (445)
7 2knc_B Integrin beta-3; transm 41.5 57 0.002 22.0 5.1 10 327-336 58-67 (79)
8 3rko_J NADH-quinone oxidoreduc 21.0 3.1E+02 0.011 21.7 8.6 24 276-299 127-150 (184)
9 2l2t_A Receptor tyrosine-prote 20.1 57 0.002 19.3 1.8 10 299-308 27-36 (44)
10 2jp3_A FXYD domain-containing 17.6 86 0.0029 20.3 2.3 45 292-340 23-67 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.64 E-value=4.5e-08 Score=76.42 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHH-hhhhhHHHhhhhHhhcCCccchhhHHHHHHHHHhHhhhhhh
Q 018749 242 SLCAFALNLAVFLLVGKTSALTMNVA-GVVKDWLLIAFSWSVIKDTVTPINLFGYGLAFLGVAYYNHS 308 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~l~~~~ 308 (351)
.++.....+++..++++.++..+..+ ..+.|++++++|+++|||++|+.+++|+.++++|+++.+..
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33333444556778999999988777 89999999999999999999999999999999999987653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=5.2e-07 Score=67.87 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhhhcccccHHHHHHH-HHHHHHHHHHHHHHhccccccchhhHHHHHHHhhhheeeecC
Q 018749 89 VVPIGALYSLSLWLSNSAYIYLSVSFIQML-KALMPVAVYSIGVTFKKESFKSDTMCNMVSISVGVAIAAYGE 160 (351)
Q Consensus 89 ~~~~~l~~~~~~~~~~~al~~~~~s~~~vi-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 160 (351)
.+...+++++...+...++++.|.+.+..+ ..+.|+++.+++++++||+++..+++++.++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788889999999999999999998 899999999999999999999999999999999998876544
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.33 E-value=5.2e-07 Score=70.36 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhhhcccccHHHHHHH-HHHHHHHHHHHHHHhccccccchhhHHHHHHHhhhheeeec
Q 018749 89 VVPIGALYSLSLWLSNSAYIYLSVSFIQML-KALMPVAVYSIGVTFKKESFKSDTMCNMVSISVGVAIAAYG 159 (351)
Q Consensus 89 ~~~~~l~~~~~~~~~~~al~~~~~s~~~vi-~~~~pi~~~ll~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 159 (351)
.+...+++++...+++.+++++|++.+..+ .++.|+++.++++++++|+++..+++|++++++|+.++...
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345667788999999999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.10 E-value=1.4e-05 Score=59.91 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=52.3
Q ss_pred HHHHHHHHhcchhHHHHHH-hhhhhHHHhhhhHhhcCCccchhhHHHHHHHHHhHhhhhhh
Q 018749 249 NLAVFLLVGKTSALTMNVA-GVVKDWLLIAFSWSVIKDTVTPINLFGYGLAFLGVAYYNHS 308 (351)
Q Consensus 249 ~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~l~~~~ 308 (351)
..+...++++.+...+... ..+.|+.+.+.++++|||++|+.+++|+.+++.|+...+..
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445567899988888666 89999999999999999999999999999999999987653
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=44.53 E-value=13 Score=24.61 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHhhhhhhhh
Q 018749 292 LFGYGLAFLGVAYYNHSKL 310 (351)
Q Consensus 292 ~~G~~li~~g~~l~~~~~~ 310 (351)
+++.++.++|+++....|-
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 3455666777766554443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=43.97 E-value=35 Score=31.03 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhHhhhhhhhhh
Q 018749 290 INLFGYGLAFLGVAYYNHSKLQ 311 (351)
Q Consensus 290 ~~~~G~~li~~g~~l~~~~~~~ 311 (351)
..+.|..+++.|+.+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3556888888999888765543
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.46 E-value=57 Score=22.03 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=4.2
Q ss_pred hccccccccc
Q 018749 327 EESGKLLEER 336 (351)
Q Consensus 327 ~~~~~~~~~~ 336 (351)
....|+..+.
T Consensus 58 ~~~NPlyk~~ 67 (79)
T 2knc_B 58 TANNPLYKEA 67 (79)
T ss_dssp TTTCCHHHHC
T ss_pred cCCCCCccCC
Confidence 3344444433
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.97 E-value=3.1e+02 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=18.3
Q ss_pred hhhhHhhcCCccchhhHHHHHHHH
Q 018749 276 IAFSWSVIKDTVTPINLFGYGLAF 299 (351)
Q Consensus 276 ~~~~~~~~~e~~s~~~~~G~~li~ 299 (351)
--+|..++++-+=+.++.+..+.+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888887654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.11 E-value=57 Score=19.30 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=3.9
Q ss_pred HHhHhhhhhh
Q 018749 299 FLGVAYYNHS 308 (351)
Q Consensus 299 ~~g~~l~~~~ 308 (351)
..+.++|.+.
T Consensus 27 ~~~~~~~~RR 36 (44)
T 2l2t_A 27 GLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3333344433
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=17.59 E-value=86 Score=20.33 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhHHHHhhhhhhhhhcccccccccCCCC
Q 018749 292 LFGYGLAFLGVAYYNHSKLQALKAKEAQKKAQQADEESGKLLEERDGEG 340 (351)
Q Consensus 292 ~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (351)
+++.++.++|+++....|- +-+..+++.+.+ +|++++..+....+
T Consensus 23 ifA~vLfi~GI~iilS~kc---rCk~~qk~~~~~-~~a~~litpg~a~~ 67 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKC---KCRRNHTPSSLP-EKVTPLITPGSAST 67 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHH---HHHHTCCTTTST-TTSHHHHSCCCSCC
T ss_pred hhHHHHHHHHHHHHHcCcc---cccCCCCCCCCC-ccCCceecCCcCCC
Done!