Query 018749
Match_columns 351
No_of_seqs 160 out of 1531
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 05:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018749.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018749hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 24.2 37 0.0027 15.9 2.8 17 166-182 3-19 (27)
2 d1iwga8 f.35.1.1 (A:513-566,A: 12.5 2.6E+02 0.019 20.6 10.0 31 273-304 95-125 (222)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 10.6 2.9E+02 0.021 19.9 7.1 31 273-303 77-107 (199)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 2.7 4.2E+02 0.031 13.2 3.0 17 165-181 18-34 (37)
5 d1y5ic1 f.21.3.1 (C:1-225) Res 2.3 5.2E+02 0.038 18.7 2.8 18 292-309 95-112 (225)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 2.0 1.4E+03 0.1 17.8 21.4 54 133-188 249-304 (383)
7 d2h5na1 a.287.1.2 (A:1-132) Hy 1.9 8.7E+02 0.063 14.9 3.0 28 149-177 89-116 (132)
8 d1ffta_ f.24.1.1 (A:) Cytochro 1.8 1.6E+03 0.11 18.4 5.7 30 165-194 140-169 (501)
9 d1gl4a1 d.22.1.2 (A:399-631) D 1.7 3.7E+02 0.027 20.2 1.0 41 104-145 42-82 (233)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 1.7 9.3E+02 0.068 14.5 3.7 15 291-305 68-82 (103)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.19 E-value=37 Score=15.91 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018749 166 WGVVLQLGAVAFEATRL 182 (351)
Q Consensus 166 ~G~~~~l~s~~~~a~~~ 182 (351)
+|.+..-++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 58888888899998864
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.50 E-value=2.6e+02 Score=20.62 Aligned_cols=31 Identities=10% Similarity=-0.111 Sum_probs=22.2
Q ss_pred HHHhhhhHhhcCCccchhhHHHHHHHHHhHhh
Q 018749 273 WLLIAFSWSVIKDTVTPINLFGYGLAFLGVAY 304 (351)
Q Consensus 273 v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~l 304 (351)
+...+.+..+.+.+++....+|.++ ..|+..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~-l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLT-TIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccc-hhhhhh
Confidence 3455677778899999999888766 444443
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.56 E-value=2.9e+02 Score=19.93 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=20.3
Q ss_pred HHHhhhhHhhcCCccchhhHHHHHHHHHhHh
Q 018749 273 WLLIAFSWSVIKDTVTPINLFGYGLAFLGVA 303 (351)
Q Consensus 273 v~~~~~~~~~~~e~~s~~~~~G~~li~~g~~ 303 (351)
+........++|.+++.....+..+.+....
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 4444445667888888888777766555444
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.71 E-value=4.2e+02 Score=13.23 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 018749 165 SWGVVLQLGAVAFEATR 181 (351)
Q Consensus 165 ~~G~~~~l~s~~~~a~~ 181 (351)
.+|.++.+.-++.++-|
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46877777777766654
No 5
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=2.25 E-value=5.2e+02 Score=18.75 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHhhhhhhh
Q 018749 292 LFGYGLAFLGVAYYNHSK 309 (351)
Q Consensus 292 ~~G~~li~~g~~l~~~~~ 309 (351)
-++.+++++|+....++|
T Consensus 95 ~i~g~l~liG~~~ll~RR 112 (225)
T d1y5ic1 95 GASGVLCLIGGVLLLKRR 112 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666554444
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.01 E-value=1.4e+03 Score=17.80 Aligned_cols=54 Identities=7% Similarity=-0.100 Sum_probs=22.2
Q ss_pred hccccccchhhHHHHHHHhhhheeeecCcccc-hhHHHHHHHHHH-HHHHHHHHHHHH
Q 018749 133 FKKESFKSDTMCNMVSISVGVAIAAYGEAKFD-SWGVVLQLGAVA-FEATRLVMIQIL 188 (351)
Q Consensus 133 ~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~-~~G~~~~l~s~~-~~a~~~v~~~~~ 188 (351)
+.++|++......- .++|.+-++....-.+ +...+.+.++++ ++-.+..+.+|+
T Consensus 249 ~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~ 304 (383)
T d1u7ga_ 249 ALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL 304 (383)
T ss_dssp HHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc
Confidence 44555665543332 2334433332222223 333555555443 443444444444
No 7
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=1.90 E-value=8.7e+02 Score=14.91 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHhhhheeeecCcccchhHHHHHHHHHHH
Q 018749 149 ISVGVAIAAYGEAKFDSWGVVLQLGAVAF 177 (351)
Q Consensus 149 ~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 177 (351)
...|+++.+-++.+.+-+ .+|.+++.+|
T Consensus 89 sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 456888888777766643 2455555554
No 8
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=1.80 E-value=1.6e+03 Score=18.40 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018749 165 SWGVVLQLGAVAFEATRLVMIQILLTSKGI 194 (351)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~ 194 (351)
..|..+..++.+..++..+.+-..+|+++.
T Consensus 140 i~gl~l~gissil~~in~i~Ti~~~R~~gm 169 (501)
T d1ffta_ 140 IWSLQLSGIGTTLTGINFFVTILKMRAPGM 169 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457777788888888877777766665443
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.71 E-value=3.7e+02 Score=20.19 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=32.1
Q ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHhccccccchhhHH
Q 018749 104 NSAYIYLSVSFIQMLKALMPVAVYSIGVTFKKESFKSDTMCN 145 (351)
Q Consensus 104 ~~al~~~~~s~~~vi~~~~pi~~~ll~~~~~~e~~~~~~~~~ 145 (351)
+.++.-+|.+....++-+.|+.. .++|+|-||.....+=.+
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~NGfs 82 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKNGFS 82 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCCHHH
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccCceE
Confidence 56778899999999999988766 668888888877666444
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.70 E-value=9.3e+02 Score=14.51 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=7.8
Q ss_pred hHHHHHHHHHhHhhh
Q 018749 291 NLFGYGLAFLGVAYY 305 (351)
Q Consensus 291 ~~~G~~li~~g~~l~ 305 (351)
++++.+.++.|+.++
T Consensus 68 r~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
Done!