Query 018751
Match_columns 351
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10083 DUF2321: Uncharacteri 79.1 3.3 7.1E-05 38.1 4.6 91 224-316 49-145 (158)
2 PF04855 SNF5: SNF5 / SMARCB1 78.3 15 0.00033 35.2 9.0 59 233-291 117-180 (244)
3 PF09070 PFU: PFU (PLAA family 55.8 21 0.00045 31.2 4.5 43 242-285 69-111 (116)
4 COG2766 PrkA Putative Ser prot 50.3 37 0.0008 37.2 6.1 62 253-315 447-508 (649)
5 COG3937 Uncharacterized conser 48.5 50 0.0011 28.9 5.6 48 255-305 26-73 (108)
6 PF10925 DUF2680: Protein of u 44.1 49 0.0011 25.6 4.4 29 257-285 22-50 (59)
7 PF11460 DUF3007: Protein of u 43.7 46 0.00099 28.9 4.6 30 285-314 65-99 (104)
8 KOG1271 Methyltransferases [Ge 39.9 16 0.00035 35.2 1.5 37 83-119 178-218 (227)
9 PF11736 DUF3299: Protein of u 37.4 31 0.00067 30.9 2.8 54 88-147 43-97 (146)
10 TIGR02698 CopY_TcrY copper tra 34.4 46 0.001 28.6 3.3 32 252-283 86-117 (130)
11 TIGR01837 PHA_granule_1 poly(h 34.3 1.4E+02 0.0029 25.7 6.1 33 253-285 22-54 (118)
12 PF13854 Kelch_5: Kelch motif 32.4 32 0.00069 23.8 1.7 14 103-116 11-24 (42)
13 PF13964 Kelch_6: Kelch motif 31.8 31 0.00068 24.0 1.6 16 103-118 8-23 (50)
14 PTZ00151 translationally contr 31.7 89 0.0019 29.1 4.9 51 273-326 85-139 (172)
15 KOG2235 Uncharacterized conser 30.9 59 0.0013 36.1 4.1 80 242-325 475-563 (776)
16 PRK12750 cpxP periplasmic repr 29.9 1.9E+02 0.0041 26.4 6.6 55 259-316 94-148 (170)
17 PF06518 DUF1104: Protein of u 28.6 2.4E+02 0.0053 23.8 6.5 18 267-284 36-53 (93)
18 PF07646 Kelch_2: Kelch motif; 28.4 40 0.00087 23.6 1.6 12 104-115 9-20 (49)
19 PF10925 DUF2680: Protein of u 27.7 1.2E+02 0.0026 23.5 4.2 42 268-309 1-52 (59)
20 COG5612 Predicted integral mem 27.6 1.3E+02 0.0028 27.5 5.0 42 264-305 43-84 (148)
21 PF03480 SBP_bac_7: Bacterial 27.5 2.3E+02 0.005 26.4 6.9 48 267-314 218-272 (286)
22 PF07946 DUF1682: Protein of u 26.7 1.9E+02 0.0042 28.4 6.5 20 295-314 292-311 (321)
23 COG2411 Uncharacterized conser 26.6 3.1E+02 0.0067 26.2 7.4 58 230-288 96-159 (188)
24 PF13863 DUF4200: Domain of un 26.2 1.9E+02 0.0041 23.9 5.6 39 262-300 37-75 (126)
25 PF09938 DUF2170: Uncharacteri 25.2 92 0.002 28.1 3.7 48 88-138 3-53 (140)
26 PF03965 Penicillinase_R: Peni 23.9 87 0.0019 25.8 3.1 30 253-282 86-115 (115)
27 PF13801 Metal_resist: Heavy-m 23.9 2.8E+02 0.0061 21.5 5.8 40 259-298 33-72 (125)
28 PF01344 Kelch_1: Kelch motif; 23.6 47 0.001 22.4 1.2 16 102-117 7-22 (47)
29 cd01145 TroA_c Periplasmic bin 22.3 1.4E+02 0.003 26.9 4.3 53 273-325 121-173 (203)
30 PF13415 Kelch_3: Galactose ox 22.1 53 0.0011 23.0 1.3 12 106-117 1-12 (49)
31 PHA01750 hypothetical protein 22.0 2.7E+02 0.0058 23.0 5.3 39 273-311 29-67 (75)
32 KOG4693 Uncharacterized conser 21.4 57 0.0012 33.3 1.8 17 103-119 299-315 (392)
33 KOG3147 6-phosphogluconolacton 21.1 71 0.0015 31.5 2.3 36 106-149 154-189 (252)
34 PRK13556 azoreductase; Provisi 20.8 53 0.0011 29.6 1.3 33 81-115 112-144 (208)
35 COG4817 DNA-binding ferritin-l 20.6 80 0.0017 27.8 2.3 16 251-266 75-90 (111)
36 PF04855 SNF5: SNF5 / SMARCB1 20.4 2.3E+02 0.0049 27.4 5.5 43 247-289 27-74 (244)
37 PF09011 HMG_box_2: HMG-box do 20.2 3.6E+02 0.0077 20.5 5.6 41 275-315 10-56 (73)
38 PF14014 DUF4230: Protein of u 20.0 1.9E+02 0.0042 24.6 4.5 71 230-305 67-143 (157)
No 1
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.15 E-value=3.3 Score=38.07 Aligned_cols=91 Identities=18% Similarity=0.394 Sum_probs=68.3
Q ss_pred CcccccccceEEEeeecCCCeeee-----ecccccchhHHHHHHhh-hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018751 224 KEDEFEQSTVVQIMFPVEPPVVCE-----FDWEFDEVDEFTDKLVE-EEALAEDQKDAFKDFVKEKVREAKKANREAKEA 297 (351)
Q Consensus 224 k~~e~e~~T~V~i~~plepPivc~-----fdwe~Dd~eeF~delie-de~Lpedqkd~fkefvKE~v~~~K~~~k~a~eA 297 (351)
+..+..-+.++.+-.+.++|-.|+ |=|-..-++. +.+|++ +++|+.|+++.|++=|.+-+++-= .-+.|.--
T Consensus 49 IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~a-a~el~ee~eeLs~deke~~~~sl~dL~~d~P-kT~vA~~r 126 (158)
T PF10083_consen 49 IRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEA-ANELIEEDEELSPDEKEQFKESLPDLTKDTP-KTKVAATR 126 (158)
T ss_pred CCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHH-HHHHHHHhhcCCHHHHHHHHhhhHHHhhcCC-ccHHHHHH
Confidence 445566678888888899999996 9998877765 455555 889999999999988888777652 23455566
Q ss_pred HHHHHhhcCHHHHHHhhcC
Q 018751 298 RRKAIEEMSEETKAAFESM 316 (351)
Q Consensus 298 rkkaI~emSee~k~a~~nm 316 (351)
.||.+..+..-..+++..+
T Consensus 127 fKk~~~K~g~~v~~~~~dI 145 (158)
T PF10083_consen 127 FKKILSKAGSIVGDAIRDI 145 (158)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 6777777777777776543
No 2
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=78.25 E-value=15 Score=35.23 Aligned_cols=59 Identities=17% Similarity=0.412 Sum_probs=45.9
Q ss_pred eEEEeeecCCCeee-eeccccc----chhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 018751 233 VVQIMFPVEPPVVC-EFDWEFD----EVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKAN 291 (351)
Q Consensus 233 ~V~i~~plepPivc-~fdwe~D----d~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~~ 291 (351)
.|++...+.--.++ .|.|+.. ++++|+..+|.|=||+-+=.-+|.--|.|++-+.||..
T Consensus 117 ~I~LdI~ig~~~l~DqFEWDL~~~~~~PE~FA~~~c~dLgL~~Ef~~aIahsIrEq~~~~kK~~ 180 (244)
T PF04855_consen 117 IIKLDITIGNHLLVDQFEWDLSNPPNSPEEFARVLCADLGLPGEFVPAIAHSIREQLLKYKKEL 180 (244)
T ss_pred EEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 5999864 58999999999999999999999999999998877644
No 3
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=55.84 E-value=21 Score=31.17 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCeeeeecccccchhHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 018751 242 PPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVR 285 (351)
Q Consensus 242 pPivc~fdwe~Dd~eeF~deliede~Lpedqkd~fkefvKE~v~ 285 (351)
||..+-|.- .|++-+.+++||.+|.||..-.+.+.+||..++.
T Consensus 69 ~~lkLpyN~-~dnP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~~ 111 (116)
T PF09070_consen 69 PPLKLPYNK-GDNPYEAAQKFIERNNLPQSYLDQIANFIIQNTK 111 (116)
T ss_dssp S-EEEEE-T-TS-HHHHHHHHHHHHT--CCHHHHHHHHHHHHHS
T ss_pred cceeCCccC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 455566655 7899999999999999999999999999998765
No 4
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=50.28 E-value=37 Score=37.20 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=51.6
Q ss_pred cchhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhc
Q 018751 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFES 315 (351)
Q Consensus 253 Dd~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~n 315 (351)
+-+.-.++.+++.++++.++++++-+||++.++.+=.. .+++|-++.=++.+||-.+..|+|
T Consensus 447 ~~L~~ive~~~~~~~f~~e~~~~yl~fv~~~~~~~Y~e-~~~keVq~A~l~sy~E~~~~l~d~ 508 (649)
T COG2766 447 VHLFYIVEGLIEREQFSDEERERYLDFVKGYLRPEYAE-FIGKEVQKAYLESYSEYGQNLFDR 508 (649)
T ss_pred HHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34456678888999999999999999999999876653 367788888899999999988776
No 5
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=48.53 E-value=50 Score=28.88 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=32.3
Q ss_pred hhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018751 255 VDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEM 305 (351)
Q Consensus 255 ~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~em 305 (351)
.++.+|++|++..|+.++.-+|-+-|..+.+.+.... -+.....|++|
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~---e~K~~r~i~~m 73 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGEL---EEKIPRKIEEM 73 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhH---HHhhhHHHHHH
Confidence 4688999999999999998776666666655554433 23344444444
No 6
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=44.11 E-value=49 Score=25.64 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 018751 257 EFTDKLVEEEALAEDQKDAFKDFVKEKVR 285 (351)
Q Consensus 257 eF~deliede~Lpedqkd~fkefvKE~v~ 285 (351)
..+|+.|++..|..+|-+++++.+.++..
T Consensus 22 ~~idk~Ve~G~iTqeqAd~ik~~id~~~~ 50 (59)
T PF10925_consen 22 QIIDKYVEAGVITQEQADAIKKHIDQRQE 50 (59)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666665554
No 7
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=43.68 E-value=46 Score=28.89 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHhhcCHHHHHHhh
Q 018751 285 REAKKANREAK-----EARRKAIEEMSEETKAAFE 314 (351)
Q Consensus 285 ~~~K~~~k~a~-----eArkkaI~emSee~k~a~~ 314 (351)
.++.+.|++|. |...|.+++||||..+++.
T Consensus 65 ~~Q~k~Ye~a~~~~~~~~lqkRle~l~~eE~~~L~ 99 (104)
T PF11460_consen 65 MQQRKDYEEAVDQLTNEELQKRLEELSPEELEALQ 99 (104)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 34556677776 4577889999999999875
No 8
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=39.95 E-value=16 Score=35.17 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=30.0
Q ss_pred hhhhccCCccccHHHHhhCCeec----cceEEEeecCccee
Q 018751 83 SVYQFKWNFSNLEDAFEEGGVLY----GKKVYLFGCTEPQL 119 (351)
Q Consensus 83 ~~~~~~W~F~nLe~aleegG~L~----gk~vYlFG~tEPql 119 (351)
-|.-.||++.+|.+.|+++|+-+ --++++||+.+=-.
T Consensus 178 vItSCN~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~t 218 (227)
T KOG1271|consen 178 VITSCNFTKDELVEEFENFNFEYLSTVPTPTFMFGGSVGST 218 (227)
T ss_pred EEEecCccHHHHHHHHhcCCeEEEEeeccceEEeccccccE
Confidence 34568999999999999999877 56689999876444
No 9
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=37.42 E-value=31 Score=30.91 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=34.7
Q ss_pred cCCccccHHHHhhCCeeccceEEEeecCcceeeccCCCCeeeeeceE-EEEecCCCCCccc
Q 018751 88 KWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVV-VAVVSPFPPSDKI 147 (351)
Q Consensus 88 ~W~F~nLe~aleegG~L~gk~vYlFG~tEPqlv~~~ge~k~v~IP~I-Vav~sp~PPsdKI 147 (351)
.|.++...++| -||+|-|=|=-=|.=..-.+-.+++.+|+. .|+-+|-|||++|
T Consensus 43 ~~~~~~~v~~L------~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqi 97 (146)
T PF11736_consen 43 QWASAPVVKAL------DGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQI 97 (146)
T ss_pred hhcccchhHHh------CCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccE
Confidence 45555544444 378888877655544221223578999994 4577888999886
No 10
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=34.36 E-value=46 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.2
Q ss_pred ccchhHHHHHHhhhhccchhHHHHHHHHHHHH
Q 018751 252 FDEVDEFTDKLVEEEALAEDQKDAFKDFVKEK 283 (351)
Q Consensus 252 ~Dd~eeF~deliede~Lpedqkd~fkefvKE~ 283 (351)
.+++..+.-+|++++.|++++.++|++.|.+.
T Consensus 86 ~gs~~~ll~~l~~~~~ls~eele~L~~li~~~ 117 (130)
T TIGR02698 86 SRKVGAVIADLIEESPLSQTDIEKLEKLLSEK 117 (130)
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 35778999999999999999999999988764
No 11
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=34.32 E-value=1.4e+02 Score=25.69 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=24.7
Q ss_pred cchhHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 018751 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVR 285 (351)
Q Consensus 253 Dd~eeF~deliede~Lpedqkd~fkefvKE~v~ 285 (351)
+..+.|.++||++..+.+++..++-+-+.++++
T Consensus 22 ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 22 EEGSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 456899999999999999996665444444444
No 12
>PF13854 Kelch_5: Kelch motif
Probab=32.40 E-value=32 Score=23.76 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=12.0
Q ss_pred eeccceEEEeecCc
Q 018751 103 VLYGKKVYLFGCTE 116 (351)
Q Consensus 103 ~L~gk~vYlFG~tE 116 (351)
.++|..+|||||..
T Consensus 11 ~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 11 VVVGNNIYIFGGYS 24 (42)
T ss_pred EEECCEEEEEcCcc
Confidence 45689999999988
No 13
>PF13964 Kelch_6: Kelch motif
Probab=31.83 E-value=31 Score=24.03 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=12.9
Q ss_pred eeccceEEEeecCcce
Q 018751 103 VLYGKKVYLFGCTEPQ 118 (351)
Q Consensus 103 ~L~gk~vYlFG~tEPq 118 (351)
+..|.++|+|||....
T Consensus 8 v~~~~~iyv~GG~~~~ 23 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNS 23 (50)
T ss_pred EEECCEEEEECCCCCC
Confidence 3458899999998774
No 14
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=31.73 E-value=89 Score=29.14 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCHHHHHHhhcCceeeeecCCC
Q 018751 273 KDAFKDFVKEKVREAKKANRE----AKEARRKAIEEMSEETKAAFESMRFYKFYPVKT 326 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~----a~eArkkaI~emSee~k~a~~nmKfYKFYP~~t 326 (351)
+..++.+||.=+++-++.+++ +.++-++.+...-......|+| |.||=-.+
T Consensus 85 Kk~Y~~yiK~YmK~vk~~L~e~~pe~v~~Fk~~a~~~vK~il~~Fkd---~qFf~GeS 139 (172)
T PTZ00151 85 KKEYSTYIKKYMQRIKAYLEEKNPDRVEKFKTNAQPFVKHILENFDD---FEFYLGES 139 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCC---ceEeecCC
Confidence 455555666666665555553 3444444444444444555555 55554433
No 15
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.91 E-value=59 Score=36.11 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=48.1
Q ss_pred CCeeeeecccccchhHHHHHHhhhh-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhcC
Q 018751 242 PPVVCEFDWEFDEVDEFTDKLVEEE-----ALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESM 316 (351)
Q Consensus 242 pPivc~fdwe~Dd~eeF~deliede-----~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~nm 316 (351)
|| ..+-...|..+.|.++..+.- .|-+-.+-.|-+-++|+++.--... +...|++-|+++-.+-++-|.||
T Consensus 475 kP--~~~~k~~d~v~~~~~~~qe~peeiLs~iae~l~~~ln~tl~er~q~if~~~--~~~~rrrti~aiqdk~~~ly~ni 550 (776)
T KOG2235|consen 475 KP--ANISKNSDIVEIWLRESQEVPEEILSVIAEKLNQELNTTLLERVQDIFAHQ--LVANRRRTISAIQDKCRQLYDNI 550 (776)
T ss_pred CC--ceeeechhhHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhhhhHHHHHHHHHHHHHHH
Confidence 55 445555566666666654421 1111223333334444444333333 22378999999999999999999
Q ss_pred cee----eeecCC
Q 018751 317 RFY----KFYPVK 325 (351)
Q Consensus 317 KfY----KFYP~~ 325 (351)
++| ||+|-.
T Consensus 551 rlyEkalklF~dd 563 (776)
T KOG2235|consen 551 RLYEKALKLFADD 563 (776)
T ss_pred HHHHHHHHhccCc
Confidence 998 777754
No 16
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=29.86 E-value=1.9e+02 Score=26.38 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhcC
Q 018751 259 TDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESM 316 (351)
Q Consensus 259 ~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~nm 316 (351)
...||.-+.+++....++ +.+.+.......-....++.+.+.-|+||+|+.|..+
T Consensus 94 ~~~Ll~a~~FDeaavral---~~~~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~ 148 (170)
T PRK12750 94 VQALVLADDFDEAAANDL---AKQMVEKQVERRVKMLEKRHQMLSILTPEQKAKFQEL 148 (170)
T ss_pred HHHHHhcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345666667777653333 2233333333333344577778999999999999875
No 17
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=28.56 E-value=2.4e+02 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=7.7
Q ss_pred ccchhHHHHHHHHHHHHH
Q 018751 267 ALAEDQKDAFKDFVKEKV 284 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v 284 (351)
.|.+++...|+.-+++.+
T Consensus 36 ~m~~~~~k~f~~~~~~~~ 53 (93)
T PF06518_consen 36 KMKEKEAKDFKKQFKEAA 53 (93)
T ss_dssp HS-HHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 444544444444444433
No 18
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.39 E-value=40 Score=23.60 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=10.7
Q ss_pred eccceEEEeecC
Q 018751 104 LYGKKVYLFGCT 115 (351)
Q Consensus 104 L~gk~vYlFG~t 115 (351)
..|.++||||+.
T Consensus 9 ~~~~kiyv~GG~ 20 (49)
T PF07646_consen 9 VLDGKIYVFGGY 20 (49)
T ss_pred EECCEEEEECCc
Confidence 459999999999
No 19
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=27.70 E-value=1.2e+02 Score=23.51 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhcCHHH
Q 018751 268 LAEDQKDAFKDFVKEKVREAKKANREAKE----------ARRKAIEEMSEET 309 (351)
Q Consensus 268 Lpedqkd~fkefvKE~v~~~K~~~k~a~e----------ArkkaI~emSee~ 309 (351)
|.++|+.++++|-+.-+..+|....++.+ ++++.|+.+-+..
T Consensus 1 lT~~Qk~el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 1 LTDQQKKELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988888877764 4555566554433
No 20
>COG5612 Predicted integral membrane protein [Function unknown]
Probab=27.56 E-value=1.3e+02 Score=27.47 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=37.1
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018751 264 EEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEM 305 (351)
Q Consensus 264 ede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~em 305 (351)
--|.||.+++..|...|.+--.+-+.+.+.++.+|..+.+-|
T Consensus 43 AGe~Lp~~~R~~fRqaLr~arq~~rei~~~arqaRreAa~ll 84 (148)
T COG5612 43 AGEALPPENRRGFRQALRAARQKNREITQRARQARREAAALL 84 (148)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHh
Confidence 457899999999999999998888999999999999887655
No 21
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=27.55 E-value=2.3e+02 Score=26.44 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=29.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCHHHHHHhh
Q 018751 267 ALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIE-------EMSEETKAAFE 314 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~-------emSee~k~a~~ 314 (351)
.||+++++.|.+-..+-.......+++..+.-.+.++ .+|++.++++.
T Consensus 218 ~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~s~~~~~~~~ 272 (286)
T PF03480_consen 218 SLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEENGVTVVELSDEELAAWR 272 (286)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEGCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCEEeCCCHHHHHHHH
Confidence 5888998888887777776665555554444444433 24666666654
No 22
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=26.66 E-value=1.9e+02 Score=28.43 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCHHHHHHhh
Q 018751 295 KEARRKAIEEMSEETKAAFE 314 (351)
Q Consensus 295 ~eArkkaI~emSee~k~a~~ 314 (351)
++.+++.+++||++...-++
T Consensus 292 r~e~~~~~~~lspeeQrK~e 311 (321)
T PF07946_consen 292 REERERKLSKLSPEEQRKYE 311 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 34444559999998776554
No 23
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=3.1e+02 Score=26.19 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=39.3
Q ss_pred ccceEEEee----ecCCCeeeeecccccchhHHHHHHhhhh-ccchhHHHHHHHHHHHH-HHHHH
Q 018751 230 QSTVVQIMF----PVEPPVVCEFDWEFDEVDEFTDKLVEEE-ALAEDQKDAFKDFVKEK-VREAK 288 (351)
Q Consensus 230 ~~T~V~i~~----plepPivc~fdwe~Dd~eeF~deliede-~Lpedqkd~fkefvKE~-v~~~K 288 (351)
+++|-.|.| ++.+|| .+...+--|+.+.+.--.+.- .|+++++.-++.||.+- .+++-
T Consensus 96 ed~VTIi~Fe~v~~~d~~i-~~~~y~g~dp~eIA~laLe~l~~Ls~~~~~iL~~~~~~gslRkaA 159 (188)
T COG2411 96 EDIVTIIEFEVVEKLDKPI-LDLPYEGRDPIEIARLALEHLDNLSERDKRILELFVEEGSLRKAA 159 (188)
T ss_pred CceEEEEEEEEehhccchh-hhccCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHcCcHHHHH
Confidence 444444445 667898 555566666766665444433 49999999999999987 55543
No 24
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.21 E-value=1.9e+02 Score=23.87 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=27.3
Q ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018751 262 LVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRK 300 (351)
Q Consensus 262 liede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkk 300 (351)
|-..+....+....|.+||++.-.+...+.+.|.+..+.
T Consensus 37 L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~ 75 (126)
T PF13863_consen 37 LEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKK 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444455567799999999988887777776665544
No 25
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=25.23 E-value=92 Score=28.06 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=32.8
Q ss_pred cCCccccHHHHhhCCeeccc--eEEEeecCcceee-ccCCCCeeeeeceEEEEe
Q 018751 88 KWNFSNLEDAFEEGGVLYGK--KVYLFGCTEPQLV-PYENKNKIVCIPVVVAVV 138 (351)
Q Consensus 88 ~W~F~nLe~aleegG~L~gk--~vYlFG~tEPqlv-~~~ge~k~v~IP~IVav~ 138 (351)
+|+-..|..+|.+-+.+-|. .|++.-+++|-|. ..+|- =-+|+-|+|.
T Consensus 3 ~wt~~~L~~aL~~~~~~~~~~~~~~~i~g~~~~L~v~~~~~---gdlpi~vavs 53 (140)
T PF09938_consen 3 NWTIASLHNALEENEDFTGGEIDCEVIEGEEPVLQVTMNDY---GDLPIFVAVS 53 (140)
T ss_pred ccCHHHHHHHHhccccccCCceeEEecCCCCCEEEEEecCC---CCccEEEEEe
Confidence 69999999999987776544 6778878887765 33320 1156666554
No 26
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=23.93 E-value=87 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=24.4
Q ss_pred cchhHHHHHHhhhhccchhHHHHHHHHHHH
Q 018751 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKE 282 (351)
Q Consensus 253 Dd~eeF~deliede~Lpedqkd~fkefvKE 282 (351)
.++..++-.|++.+.|++++.+++++.|++
T Consensus 86 gs~~~l~~~l~~~~~ls~~el~~L~~li~e 115 (115)
T PF03965_consen 86 GSIPQLVAALVESEELSPEELEELRKLIDE 115 (115)
T ss_dssp THHHHHHHHHHHCT-S-HHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHcC
Confidence 477899999999999999999999988864
No 27
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.89 E-value=2.8e+02 Score=21.49 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018751 259 TDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEAR 298 (351)
Q Consensus 259 ~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eAr 298 (351)
.......-+|+++|..+|.+-..+...+....-.+-++++
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r 72 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMDEFRQEMRALRQELRAAR 72 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666799999999998777766655444333333333
No 28
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=23.56 E-value=47 Score=22.44 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=12.4
Q ss_pred CeeccceEEEeecCcc
Q 018751 102 GVLYGKKVYLFGCTEP 117 (351)
Q Consensus 102 G~L~gk~vYlFG~tEP 117 (351)
....|-.||+|||.-.
T Consensus 7 ~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDG 22 (47)
T ss_dssp EEEETTEEEEEEEBES
T ss_pred EEEECCEEEEEeeecc
Confidence 3455899999998765
No 29
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.33 E-value=1.4e+02 Score=26.94 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhcCceeeeecCC
Q 018751 273 KDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESMRFYKFYPVK 325 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~nmKfYKFYP~~ 325 (351)
...|.+.|-+..-+.+..++++.++-.++++++..+.++.+..++=.+|.=.|
T Consensus 121 a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~~~~~~~v~~H 173 (203)
T cd01145 121 AKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEGLKGIQVVAYH 173 (203)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEec
Confidence 55566666666677788888999999999999999999888876644454444
No 30
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.12 E-value=53 Score=22.99 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.0
Q ss_pred cceEEEeecCcc
Q 018751 106 GKKVYLFGCTEP 117 (351)
Q Consensus 106 gk~vYlFG~tEP 117 (351)
|..+||||+...
T Consensus 1 g~~~~vfGG~~~ 12 (49)
T PF13415_consen 1 GNKLYVFGGYDD 12 (49)
T ss_pred CCEEEEECCcCC
Confidence 568999999874
No 31
>PHA01750 hypothetical protein
Probab=22.00 E-value=2.7e+02 Score=22.95 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 018751 273 KDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKA 311 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~ 311 (351)
+..|++.|||-|+.+---.+..-++.++.+++++++.++
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~e 67 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEE 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445666666666666666666667777777777766554
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=21.42 E-value=57 Score=33.29 Aligned_cols=17 Identities=59% Similarity=0.886 Sum_probs=14.3
Q ss_pred eeccceEEEeecCccee
Q 018751 103 VLYGKKVYLFGCTEPQL 119 (351)
Q Consensus 103 ~L~gk~vYlFG~tEPql 119 (351)
...|-+|||||+|-|--
T Consensus 299 ~v~g~kv~LFGGTsP~~ 315 (392)
T KOG4693|consen 299 VVSGGKVYLFGGTSPLP 315 (392)
T ss_pred EEECCEEEEecCCCCCC
Confidence 44599999999999965
No 33
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=21.13 E-value=71 Score=31.53 Aligned_cols=36 Identities=39% Similarity=0.505 Sum_probs=25.9
Q ss_pred cceEEEeecCcceeeccCCCCeeeeeceEEEEecCCCCCccccc
Q 018751 106 GKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGI 149 (351)
Q Consensus 106 gk~vYlFG~tEPqlv~~~ge~k~v~IP~IVav~sp~PPsdKIGi 149 (351)
||++=||=+ .+++.. ..+- ++++-|||-|||++|-.
T Consensus 154 GHtaSLFP~-~~~l~e---~~~w----V~~itdSPkpPp~RITl 189 (252)
T KOG3147|consen 154 GHTASLFPG-HPLLNE---KLKW----VVPITDSPKPPPKRITL 189 (252)
T ss_pred CCeeecCCC-chhhhc---ccCE----EEEeCCCCCCCCccEEE
Confidence 999999988 666631 1222 34567999999999964
No 34
>PRK13556 azoreductase; Provisional
Probab=20.83 E-value=53 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.2
Q ss_pred hhhhhhccCCccccHHHHhhCCeeccceEEEeecC
Q 018751 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCT 115 (351)
Q Consensus 81 ~d~~~~~~W~F~nLe~aleegG~L~gk~vYlFG~t 115 (351)
+|.+...+|.|..-+.. ..|.|.||+++|++++
T Consensus 112 iD~v~~~g~tf~~~~~g--~~gll~~K~~~vi~ts 144 (208)
T PRK13556 112 IDYLNRAGKTFKYTPEG--PVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHhcCCceeecCCCC--CccccCCCEEEEEEeC
Confidence 68888889988652111 1267889999888764
No 35
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=20.56 E-value=80 Score=27.79 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=11.3
Q ss_pred cccchhHHHHHHhhhh
Q 018751 251 EFDEVDEFTDKLVEEE 266 (351)
Q Consensus 251 e~Dd~eeF~deliede 266 (351)
..||+.+|+|+|+.|.
T Consensus 75 ~GdDvA~F~D~Ll~D~ 90 (111)
T COG4817 75 LGDDVATFCDALLGDY 90 (111)
T ss_pred hcchHHHHHHHHHcch
Confidence 3477777777777775
No 36
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=20.43 E-value=2.3e+02 Score=27.41 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=34.1
Q ss_pred eecccc----cchhHHHHHHhhhhccchhH-HHHHHHHHHHHHHHHHH
Q 018751 247 EFDWEF----DEVDEFTDKLVEEEALAEDQ-KDAFKDFVKEKVREAKK 289 (351)
Q Consensus 247 ~fdwe~----Dd~eeF~deliede~Lpedq-kd~fkefvKE~v~~~K~ 289 (351)
.|=|.+ -+++.|+.-||+|-+||... ...|.+-|++++.+-+.
T Consensus 27 ~FlWNlne~~itpe~FA~~lc~Dl~lp~~~~~~~I~~sI~~Qi~e~~~ 74 (244)
T PF04855_consen 27 TFLWNLNEPLITPEEFAEILCEDLDLPPSFFVQQIANSIREQIEEYAS 74 (244)
T ss_pred EEEeeCCCCCCCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 477755 56799999999999999998 77777777777775554
No 37
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=20.21 E-value=3.6e+02 Score=20.46 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhcCHHHHHHhhc
Q 018751 275 AFKDFVKEKVREAKKA------NREAKEARRKAIEEMSEETKAAFES 315 (351)
Q Consensus 275 ~fkefvKE~v~~~K~~------~k~a~eArkkaI~emSee~k~a~~n 315 (351)
+|.=|+++...+.+.. ..+.....-..=-.||++.|+.|+.
T Consensus 10 ay~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~ 56 (73)
T PF09011_consen 10 AYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEE 56 (73)
T ss_dssp HHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455777776666555 2233333333344778777777764
No 38
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.03 E-value=1.9e+02 Score=24.58 Aligned_cols=71 Identities=20% Similarity=0.432 Sum_probs=32.9
Q ss_pred ccceEEEeeecCCCeeeeecccccchhHHHHH--HhhhhccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018751 230 QSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDK--LVEEEALAEDQKDAF----KDFVKEKVREAKKANREAKEARRKAIE 303 (351)
Q Consensus 230 ~~T~V~i~~plepPivc~fdwe~Dd~eeF~de--liede~Lpedqkd~f----kefvKE~v~~~K~~~k~a~eArkkaI~ 303 (351)
+...|.|..| ||.++..+.+.+.++.|-.+ +... ...+....+ ++-+++++.. .....+|++.-++.|.
T Consensus 67 ~~~~i~I~LP--~~~i~~~~id~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~a~~-~~i~~~A~~~a~~~l~ 141 (157)
T PF14014_consen 67 DGKTITITLP--PPEILSVEIDEDSIKVYDEKGGWFNP--ITPEDQNEAQKEAKKKIEQEANE-SGILEQAKENAEKALE 141 (157)
T ss_pred CCCEEEEECC--CcEEeeeecCccceEEEEccCCccCC--CCHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 4455666644 67677666665555444111 1111 222222222 3333333332 2355666666666665
Q ss_pred hc
Q 018751 304 EM 305 (351)
Q Consensus 304 em 305 (351)
.|
T Consensus 142 ~l 143 (157)
T PF14014_consen 142 QL 143 (157)
T ss_pred HH
Confidence 54
Done!