Query 018751
Match_columns 351
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sri_B Rhoptry NECK protein 2; 71.9 0.93 3.2E-05 30.1 0.4 21 132-152 7-27 (29)
2 2k89_A PLA2P, PLAP, phospholip 59.7 9 0.00031 30.5 3.9 43 242-285 29-71 (80)
3 2lru_A Serine/threonine-protei 63.4 2 6.8E-05 35.5 0.0 48 243-290 47-94 (98)
4 3zwz_B RON2, rhoptry NECK prot 44.0 5.7 0.0002 27.9 0.4 21 132-152 13-33 (39)
5 4hsp_A Hypothetical protein; P 37.2 13 0.00044 32.5 1.6 45 104-148 52-98 (150)
6 2q97_T Toxofilin, actin, alpha 30.5 29 0.001 29.5 2.7 24 290-313 66-89 (129)
7 3f2v_A General stress protein 29.4 24 0.00083 30.7 2.1 29 81-115 81-109 (192)
8 1txj_A Translationally control 27.6 81 0.0028 28.0 5.1 51 273-326 84-138 (171)
9 1yz1_A Translationally control 24.8 99 0.0034 27.5 5.2 51 273-326 87-141 (174)
10 3hfh_A Transcription elongatio 24.3 1.3E+02 0.0046 25.8 5.9 49 257-305 28-80 (190)
11 2vpn_A Periplasmic substrate b 23.2 1.4E+02 0.0049 26.8 6.1 50 267-316 222-280 (316)
12 3lay_A Zinc resistance-associa 23.0 1.3E+02 0.0044 26.5 5.5 38 267-305 67-104 (175)
13 1h6q_A TCTP, P23FYP, translati 22.6 98 0.0033 27.4 4.7 51 273-326 81-135 (168)
14 2pfy_A Putative exported prote 22.6 1E+02 0.0035 27.5 4.9 24 267-290 220-243 (301)
15 3u65_B TP33 protein; tetratric 22.0 2.1E+02 0.0071 26.4 7.1 50 266-315 238-294 (328)
16 2pfz_A Putative exported prote 21.8 1.3E+02 0.0046 26.8 5.6 23 267-289 219-241 (301)
No 1
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=71.94 E-value=0.93 Score=30.07 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=16.9
Q ss_pred ceEEEEecCCCCCccccccce
Q 018751 132 PVVVAVVSPFPPSDKIGIKSV 152 (351)
Q Consensus 132 P~IVav~sp~PPsdKIGi~SV 152 (351)
|+--++.|-.|||.+|||.|+
T Consensus 7 P~tSCyTs~~~PPkqiCi~q~ 27 (29)
T 3sri_B 7 PVASCFTTRMSPPQQICLNSV 27 (29)
T ss_dssp CCCSEEEESSSSCCEEEEC--
T ss_pred cchheeecccCchHHHHHHHh
Confidence 666678999999999999886
No 2
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=59.65 E-value=9 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCeeeeecccccchhHHHHHHhhhhccchhHHHHHHHHHHHHHH
Q 018751 242 PPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVR 285 (351)
Q Consensus 242 pPivc~fdwe~Dd~eeF~deliede~Lpedqkd~fkefvKE~v~ 285 (351)
||.-+-|. ..|++-+.++++|++|.||..-.+.+.+||..++.
T Consensus 29 ~~lkLpyN-~~dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 29 PSYKLPYN-TSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp SCEEEEEC-TTSCHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred cccccCcc-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 34333333 45888999999999999999999999999998764
No 3
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=63.41 E-value=2 Score=35.54 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=42.7
Q ss_pred CeeeeecccccchhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 018751 243 PVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKA 290 (351)
Q Consensus 243 Pivc~fdwe~Dd~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~ 290 (351)
-|.+.||.+.|..++++.+.|+...|++.....+.+.|+++|..-++.
T Consensus 47 aIeF~Fdle~Dta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~r~ 94 (98)
T 2lru_A 47 AIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRK 94 (98)
Confidence 366778999999999999999999999999999999999999866553
No 4
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=43.98 E-value=5.7 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.3
Q ss_pred ceEEEEecCCCCCccccccce
Q 018751 132 PVVVAVVSPFPPSDKIGIKSV 152 (351)
Q Consensus 132 P~IVav~sp~PPsdKIGi~SV 152 (351)
|+--++.|-+|||.+|||.++
T Consensus 13 Pv~SC~ts~i~PPk~~Ci~q~ 33 (39)
T 3zwz_B 13 PVASCFTTRMSPPQQICLNSV 33 (39)
T ss_dssp CCCSEEEESSSSCCEEEESSC
T ss_pred chhhhhhccCCcHHHHHHHHH
Confidence 666788999999999999876
No 5
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=37.17 E-value=13 Score=32.55 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=31.5
Q ss_pred eccceEEEeecCcceeeccCC-CCeeeeeceEE-EEecCCCCCcccc
Q 018751 104 LYGKKVYLFGCTEPQLVPYEN-KNKIVCIPVVV-AVVSPFPPSDKIG 148 (351)
Q Consensus 104 L~gk~vYlFG~tEPqlv~~~g-e~k~v~IP~IV-av~sp~PPsdKIG 148 (351)
|-||+|-|=|=-=|-=.+-+| -..++++|+.- |+-.|-|||++|=
T Consensus 52 LdGk~VripGfvvPLe~~~~~~vteFlLVPy~GACiH~PPPPpNQiI 98 (150)
T 4hsp_A 52 LDGIEAKLPGYIVPLEISEAGLVTEFLLVPYYGACIHVPPPPSNQIV 98 (150)
T ss_dssp GTTEEEEEEEEEEEEEECTTSEEEEEEEESSTTBTTTBCCCCGGGCE
T ss_pred hCCCEEEeccEEEEeccCCCCcEEEEEEeCCCCcCcCCCCCCCceEE
Confidence 449999998876665543223 25778899874 4566788999873
No 6
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=30.47 E-value=29 Score=29.53 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHh
Q 018751 290 ANREAKEARRKAIEEMSEETKAAF 313 (351)
Q Consensus 290 ~~k~a~eArkkaI~emSee~k~a~ 313 (351)
...++.|.-++-|.+||||+|.++
T Consensus 66 dQQ~aYEqvq~dl~~mSPEtKa~L 89 (129)
T 2q97_T 66 EQQKAYEQVQRDLSQLSPETKALL 89 (129)
T ss_dssp HHHHHHHHHHHHHTTSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHH
Confidence 356788899999999999999876
No 7
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=29.35 E-value=24 Score=30.66 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=19.8
Q ss_pred hhhhhhccCCccccHHHHhhCCeeccceEEEeecC
Q 018751 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCT 115 (351)
Q Consensus 81 ~d~~~~~~W~F~nLe~aleegG~L~gk~vYlFG~t 115 (351)
+|+++..+|.|.. .||.|.||+++++.++
T Consensus 81 iDrv~~~g~~y~~------~g~~l~gK~~~~~~t~ 109 (192)
T 3f2v_A 81 LDEVLTYGWAYGS------KGKALKGRKIALAVSL 109 (192)
T ss_dssp HHHHSCBTTTBSS------SCCSSTTCEEEEEEEE
T ss_pred HHHHhhcCccccC------CCCCCCCCEEEEEEeC
Confidence 5777776776652 3578888888877543
No 8
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=27.62 E-value=81 Score=28.04 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCHHHHHHhhcCceeeeecCCC
Q 018751 273 KDAFKDFVKEKVREAKKANREA----KEARRKAIEEMSEETKAAFESMRFYKFYPVKT 326 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~a----~eArkkaI~emSee~k~a~~nmKfYKFYP~~t 326 (351)
+..++.+||.=++.-++..++. .++-++.+.+.=-.....|+| |.||=--+
T Consensus 84 Kk~y~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd---~qFf~GES 138 (171)
T 1txj_A 84 KKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDD---FEFYMGES 138 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGG---CEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcC---ccEeccCC
Confidence 6667777777777766666542 344444444444444555555 55554443
No 9
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=24.75 E-value=99 Score=27.50 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCHHHHHHhhcCceeeeecCCC
Q 018751 273 KDAFKDFVKEKVREAKKANREA----KEARRKAIEEMSEETKAAFESMRFYKFYPVKT 326 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~a----~eArkkaI~emSee~k~a~~nmKfYKFYP~~t 326 (351)
+..++.+||.=++.-++..++. .++=++.+.+.=-.....|+| |.||--.+
T Consensus 87 Kk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd---~qFf~GES 141 (174)
T 1yz1_A 87 KEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKN---YQFFIGEN 141 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGG---CEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcC---ccEeccCC
Confidence 5566677777766666665532 333344444333334444554 66665554
No 10
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=24.30 E-value=1.3e+02 Score=25.78 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHhhhh---ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018751 257 EFTDKLVEEE---ALAED-QKDAFKDFVKEKVREAKKANREAKEARRKAIEEM 305 (351)
Q Consensus 257 eF~deliede---~Lped-qkd~fkefvKE~v~~~K~~~k~a~eArkkaI~em 305 (351)
.....||.|. .|+.. -+..|.+|++++.++++.+.+++....+.+.-.|
T Consensus 28 ~~~~~i~~Dpry~al~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~l 80 (190)
T 3hfh_A 28 XELHXIVFDPRYLLLNPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXM 80 (190)
T ss_dssp HHGGGTTTSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhhhccCcchhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566665 45433 3999999999998887665544433333333333
No 11
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=23.22 E-value=1.4e+02 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=26.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HhhcCHHHHHHhhcC
Q 018751 267 ALAEDQKDAFKDFVKEKVREAKKANREAK-EARRKA--------IEEMSEETKAAFESM 316 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v~~~K~~~k~a~-eArkka--------I~emSee~k~a~~nm 316 (351)
.||++++..|.+-.++-........++.. +++++. |-++|++.+++|..+
T Consensus 222 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~~~Gv~v~~~~~~~~~~~~~~ 280 (316)
T 2vpn_A 222 GLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASDEVTVTRLNDEQIQAFKER 280 (316)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCTTCEEEECCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEeCCHHHHHHHHHH
Confidence 57777777777665555444443333221 222222 334677777777654
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.03 E-value=1.3e+02 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018751 267 ALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEM 305 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~em 305 (351)
.|+++|+.++++- .++.+.+....++...+.+.++..+
T Consensus 67 nLT~EQq~ql~~I-~~e~r~~~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 67 PLTTEQQATAQKI-YDDYYTQTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp -CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999998854 4444444555566555666665544
No 13
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=22.64 E-value=98 Score=27.44 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCHHHHHHhhcCceeeeecCCC
Q 018751 273 KDAFKDFVKEKVREAKKANRE----AKEARRKAIEEMSEETKAAFESMRFYKFYPVKT 326 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~----a~eArkkaI~emSee~k~a~~nmKfYKFYP~~t 326 (351)
+..++.+||.=++.-++..++ +.++-++.+.+.=-.....|+| |.||--.+
T Consensus 81 Kk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd---~qFf~GEs 135 (168)
T 1h6q_A 81 KKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKD---YDFYIGES 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTT---TCCEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcC---ccEeccCC
Confidence 556666777666666665553 2344444444333334445555 55554443
No 14
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=22.61 E-value=1e+02 Score=27.53 Aligned_cols=24 Identities=13% Similarity=0.053 Sum_probs=14.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 018751 267 ALAEDQKDAFKDFVKEKVREAKKA 290 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v~~~K~~ 290 (351)
.||++++..|.+..++-.......
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~ 243 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQT 243 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777776666554444333
No 15
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=22.04 E-value=2.1e+02 Score=26.39 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=27.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCHHHHHHhhc
Q 018751 266 EALAEDQKDAFKDFVKEKVREAKKANREAKEARRKA-------IEEMSEETKAAFES 315 (351)
Q Consensus 266 e~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkka-------I~emSee~k~a~~n 315 (351)
+.||++++..|.+-.++-........++..+...+. |-++|++.+++|..
T Consensus 238 ~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~ 294 (328)
T 3u65_B 238 ARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRT 294 (328)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHH
Confidence 367788877777766665544444333322222222 34567777766664
No 16
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=21.79 E-value=1.3e+02 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=14.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 018751 267 ALAEDQKDAFKDFVKEKVREAKK 289 (351)
Q Consensus 267 ~Lpedqkd~fkefvKE~v~~~K~ 289 (351)
.||++++..|.+-.++-......
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~ 241 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWK 241 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666555444433
Done!