Query 018751
Match_columns 351
No_of_seqs 42 out of 44
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 05:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018751.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018751hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okra_ a.4.5.39 (A:) Methicil 34.7 7.8 0.00057 28.9 1.8 31 252-282 89-119 (120)
2 d1sd4a_ a.4.5.39 (A:) Penicill 32.2 20 0.0015 27.1 3.9 31 253-283 89-119 (122)
3 d1w85a_ c.36.1.11 (A:) Pyruvat 29.3 26 0.0019 31.5 4.8 56 251-316 289-344 (365)
4 d1h6qa_ b.88.1.2 (A:) Translat 22.2 57 0.0042 26.7 5.2 52 273-327 81-136 (168)
5 d1txja_ b.88.1.2 (A:) Translat 20.6 59 0.0043 26.7 5.0 51 273-326 84-138 (171)
6 d1t11a1 a.223.1.1 (A:248-376) 18.1 42 0.0031 24.7 3.2 30 260-289 3-32 (129)
7 d1or7a1 a.4.13.2 (A:120-187) S 17.8 57 0.0041 21.6 3.6 23 292-314 6-28 (68)
8 d1w26a1 a.223.1.1 (A:248-432) 17.6 90 0.0065 24.1 5.3 31 260-290 3-33 (185)
9 d2hh6a1 a.69.4.1 (A:1-112) Unc 17.4 57 0.0041 25.2 3.9 41 279-323 3-45 (112)
10 d1umda_ c.36.1.11 (A:) Branche 16.8 49 0.0036 29.4 3.9 57 250-316 287-343 (362)
No 1
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=34.69 E-value=7.8 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=27.2
Q ss_pred ccchhHHHHHHhhhhccchhHHHHHHHHHHH
Q 018751 252 FDEVDEFTDKLVEEEALAEDQKDAFKDFVKE 282 (351)
Q Consensus 252 ~Dd~eeF~deliede~Lpedqkd~fkefvKE 282 (351)
.+++..++..|+++++|++++.+++++.|.+
T Consensus 89 ~~~~~~~~~~~~~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 89 KGGFNSLVLNFVEKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp TTCHHHHHHHHHHHSCCCHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHccCCCHHHHHHHHHHHhc
Confidence 3677899999999999999999999988864
No 2
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=32.23 E-value=20 Score=27.09 Aligned_cols=31 Identities=10% Similarity=0.353 Sum_probs=27.8
Q ss_pred cchhHHHHHHhhhhccchhHHHHHHHHHHHH
Q 018751 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKEK 283 (351)
Q Consensus 253 Dd~eeF~deliede~Lpedqkd~fkefvKE~ 283 (351)
.++..++-.|++++.|+.++.+++++.|.+.
T Consensus 89 gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~ 119 (122)
T d1sd4a_ 89 GDMKSLVLNFAKNEELNNKEIEELRDILNDI 119 (122)
T ss_dssp TCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999999988764
No 3
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.29 E-value=26 Score=31.46 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=44.0
Q ss_pred cccchhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhcC
Q 018751 251 EFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESM 316 (351)
Q Consensus 251 e~Dd~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~nm 316 (351)
..|-+.-|.+.|++..-+++++.+++++-++++|. +|.++|.+.=-|+..+.|+++
T Consensus 289 ~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~----------~A~~~A~~sP~P~~~~l~~~V 344 (365)
T d1w85a_ 289 KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK----------EAIKKADETPKQKVTDLISIM 344 (365)
T ss_dssp TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH----------HHHHHHHTSCCCCHHHHHHTS
T ss_pred hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHhCCCCCHHHHHhhh
Confidence 56778889999999999999999999988888886 555666666666667777763
No 4
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=22.15 E-value=57 Score=26.72 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCHHHHHHhhcCceeeeecCCCC
Q 018751 273 KDAFKDFVKEKVREAKKANRE----AKEARRKAIEEMSEETKAAFESMRFYKFYPVKTP 327 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k~----a~eArkkaI~emSee~k~a~~nmKfYKFYP~~t~ 327 (351)
++.++.+||.=+++-+...++ +.+.-++.+.+ -.|.-+.|.+=|.||--.+-
T Consensus 81 Kk~y~~yiK~YmK~vk~~L~e~~perv~~Fk~~a~~---~vK~Il~nFkd~qFf~GESm 136 (168)
T d1h6qa_ 81 KKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG---FVKKILANFKDYDFYIGESM 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHH---HHHHHHTTTTTTCCEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHhHHH---HHHHHHhcCccceEeccCCC
Confidence 666777777777766666643 34444444443 34444455555666655543
No 5
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=20.65 E-value=59 Score=26.67 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCHHHHHHhhcCceeeeecCCC
Q 018751 273 KDAFKDFVKEKVREAKKANR----EAKEARRKAIEEMSEETKAAFESMRFYKFYPVKT 326 (351)
Q Consensus 273 kd~fkefvKE~v~~~K~~~k----~a~eArkkaI~emSee~k~a~~nmKfYKFYP~~t 326 (351)
+..++.+||.=+++-++..+ .+.++-++.+.+.=..... |.+=|.||.--+
T Consensus 84 Kk~y~~yiK~YmK~v~~~L~e~~perV~~Fk~~a~~~vK~Il~---nFkd~qFf~GES 138 (171)
T d1txja_ 84 KKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILT---NFDDFEFYMGES 138 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH---TGGGCEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHh---hCccceEeccCC
Confidence 45566666666666555553 2333444444444334444 445556665544
No 6
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=18.09 E-value=42 Score=24.68 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHH
Q 018751 260 DKLVEEEALAEDQKDAFKDFVKEKVREAKK 289 (351)
Q Consensus 260 deliede~Lpedqkd~fkefvKE~v~~~K~ 289 (351)
|+|+..-|...+-.+.|+++||+++..+..
T Consensus 3 Defak~~g~~~~tleelk~~ik~~l~~~~~ 32 (129)
T d1t11a1 3 DEFVARFGVAEGGVDALKAEVRKNMERELK 32 (129)
T ss_dssp TGGGGGGSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcCCCHHHHHHHHHHHHHHHHH
Confidence 456666555556789999999999987665
No 7
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=17.84 E-value=57 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhh
Q 018751 292 REAKEARRKAIEEMSEETKAAFE 314 (351)
Q Consensus 292 k~a~eArkkaI~emSee~k~a~~ 314 (351)
++-.+...++|+.|++++|+.|.
T Consensus 6 ~e~~~~l~~~l~~Lp~~~r~v~~ 28 (68)
T d1or7a1 6 EELRQIVFRTIESLPEDLRMAIT 28 (68)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567788999999999999874
No 8
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.63 E-value=90 Score=24.05 Aligned_cols=31 Identities=6% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 018751 260 DKLVEEEALAEDQKDAFKDFVKEKVREAKKA 290 (351)
Q Consensus 260 deliede~Lpedqkd~fkefvKE~v~~~K~~ 290 (351)
|+|.++-|...+-.++|++.|++++..++..
T Consensus 3 dEFak~~g~e~~tleelk~~ik~~l~~~~~~ 33 (185)
T d1w26a1 3 AEFIKRFGVEDGSVEGLRAEVRKNMERELKS 33 (185)
T ss_dssp HHHHTTTTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555554544345889999999999877663
No 9
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=17.37 E-value=57 Score=25.21 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=27.5
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhcCHHHHHHhhcCceeeeec
Q 018751 279 FVKEKVR--EAKKANREAKEARRKAIEEMSEETKAAFESMRFYKFYP 323 (351)
Q Consensus 279 fvKE~v~--~~K~~~k~a~eArkkaI~emSee~k~a~~nmKfYKFYP 323 (351)
|++.-.. +.|+++|+ .+|| +..|.++++.+|++|.-|=|+=
T Consensus 3 ~~~ki~g~~~~kke~k~-~~~R---~k~Lp~dy~~~y~~I~~Yl~~~ 45 (112)
T d2hh6a1 3 FIEKMIGSLNDKREWKA-MEAR---AKALPKEYHHAYKAIQKYMWTS 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH---HHHSCHHHHHHHHHHHHHHSST
T ss_pred HHHHHHCchHhhHHHHH-HHHH---HHhCCHHHHHHHHHHHHHHHHc
Confidence 4444343 35666643 4444 4458999999999999998743
No 10
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}
Probab=16.83 E-value=49 Score=29.43 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred ccccchhHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhhcC
Q 018751 250 WEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESM 316 (351)
Q Consensus 250 we~Dd~eeF~deliede~Lpedqkd~fkefvKE~v~~~K~~~k~a~eArkkaI~emSee~k~a~~nm 316 (351)
...|=+.-|-+.|++..-+++++.++|++-++.+|. +|.++|.+.-.|...+.|+++
T Consensus 287 ~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~----------~a~~~A~~~p~P~~~~l~~~V 343 (362)
T d1umda_ 287 RKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELE----------RGLKEAEEAGPVPPEWMFEDV 343 (362)
T ss_dssp HTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH----------HHHHHHHHTCBCCGGGGGTTS
T ss_pred hcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------HHHHHHHhCCCCCHHHHHhcc
Confidence 355777888888888888899999999988888776 444555555445455566663
Done!