Query 018755
Match_columns 351
No_of_seqs 196 out of 563
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2297 Predicted translation 100.0 5E-114 1E-118 818.5 31.0 347 1-351 2-411 (412)
2 KOG1461 Translation initiation 99.9 2.5E-22 5.3E-27 206.2 14.1 155 185-351 513-669 (673)
3 smart00515 eIF5C Domain at the 99.9 3.5E-22 7.6E-27 158.9 8.7 83 265-347 1-83 (83)
4 PF02020 W2: eIF4-gamma/eIF5/e 99.8 2.2E-21 4.7E-26 154.9 7.9 76 276-351 2-80 (84)
5 KOG2767 Translation initiation 99.7 2E-15 4.3E-20 146.4 15.2 96 256-351 292-393 (400)
6 PF09090 MIF4G_like_2: MIF4G l 96.4 0.091 2E-06 50.1 14.0 124 183-324 12-136 (253)
7 KOG1104 Nuclear cap-binding co 88.4 16 0.00034 40.1 15.2 273 24-325 309-623 (759)
8 KOG2140 Uncharacterized conser 83.4 8.1 0.00018 41.0 9.8 121 103-229 503-626 (739)
9 smart00544 MA3 Domain in DAP-5 78.8 6 0.00013 32.3 5.9 59 102-163 52-113 (113)
10 PF02847 MA3: MA3 domain; Int 76.2 8.3 0.00018 31.4 6.0 59 102-163 52-113 (113)
11 PF02847 MA3: MA3 domain; Int 66.0 69 0.0015 25.8 12.1 100 185-312 5-112 (113)
12 PF10193 Telomere_reg-2: Telom 54.7 73 0.0016 26.7 7.6 84 99-190 18-108 (114)
13 COG5656 SXM1 Importin, protein 39.2 6.1E+02 0.013 28.7 13.2 69 275-343 513-592 (970)
14 PRK10167 hypothetical protein; 37.4 76 0.0017 28.7 5.4 74 101-179 70-144 (169)
15 KOG2141 Protein involved in hi 37.2 2.4E+02 0.0052 31.4 9.8 95 106-205 672-766 (822)
16 PF08349 DUF1722: Protein of u 35.8 97 0.0021 25.9 5.5 72 101-177 29-101 (117)
17 PF14821 Thr_synth_N: Threonin 35.7 36 0.00079 26.7 2.7 46 26-71 10-62 (79)
18 PF07528 DZF: DZF domain; Int 35.1 38 0.00083 32.5 3.2 50 67-117 182-234 (248)
19 PF12460 MMS19_C: RNAPII trans 33.7 2.3E+02 0.0051 28.7 8.9 45 119-168 316-360 (415)
20 PHA02690 hypothetical protein; 33.7 41 0.00088 27.0 2.6 31 42-72 21-51 (90)
21 PF08362 TetR_C_3: YcdC-like p 33.5 1.1E+02 0.0023 26.9 5.6 62 98-163 20-86 (143)
22 KOG2243 Ca2+ release channel ( 33.0 4.6E+02 0.0099 32.1 11.3 29 317-346 3399-3427(5019)
23 PF11264 ThylakoidFormat: Thyl 32.8 3.5E+02 0.0075 25.6 9.1 29 132-164 56-84 (216)
24 cd01051 Mn_catalase Manganese 31.3 2.6E+02 0.0057 24.7 7.8 102 29-137 20-139 (156)
25 PF09851 SHOCT: Short C-termin 30.4 51 0.0011 21.3 2.3 20 300-319 5-24 (31)
26 PF13972 TetR: Bacterial trans 29.5 1.5E+02 0.0033 25.2 5.8 32 99-130 20-51 (146)
27 PF15080 DUF4547: Domain of un 27.7 2.8E+02 0.0061 25.3 7.2 29 261-289 144-172 (196)
28 PF11517 Nab2: Nuclear abundan 27.4 1.5E+02 0.0031 24.9 4.9 71 129-206 17-94 (107)
29 KOG3685 Uncharacterized conser 26.3 1E+03 0.022 27.4 12.3 186 99-291 716-945 (1338)
30 cd00620 Methyltransferase_Sun 25.4 3.8E+02 0.0083 22.2 7.5 84 103-195 37-125 (126)
31 PF09733 VEFS-Box: VEFS-Box of 25.1 3.4E+02 0.0074 23.8 7.2 62 256-319 67-135 (140)
32 KOG0213 Splicing factor 3b, su 24.5 3.3E+02 0.0071 30.9 8.2 41 128-168 509-549 (1172)
33 cd08330 CARD_ASC_NALP1 Caspase 24.1 2.3E+02 0.005 22.3 5.5 51 298-348 16-74 (82)
34 TIGR02100 glgX_debranch glycog 24.0 1.8E+02 0.0039 32.0 6.4 95 29-123 401-575 (688)
35 PF10474 DUF2451: Protein of u 23.1 6.4E+02 0.014 23.8 10.7 24 297-324 179-202 (234)
36 PF15595 Imm31: Immunity prote 23.0 3.2E+02 0.0069 22.8 6.4 80 24-124 20-101 (107)
37 smart00544 MA3 Domain in DAP-5 22.2 4.1E+02 0.009 21.2 11.1 78 185-290 5-83 (113)
38 PF14026 DUF4242: Protein of u 22.0 47 0.001 26.0 1.1 27 81-108 39-65 (77)
39 PF00123 Hormone_2: Peptide ho 21.9 66 0.0014 20.6 1.6 10 336-345 18-27 (28)
40 PF04818 CTD_bind: RNA polymer 21.2 2.4E+02 0.0052 20.6 4.8 47 109-155 11-59 (64)
41 PF14143 YrhC: YrhC-like prote 20.3 51 0.0011 25.9 1.0 24 57-81 8-34 (72)
No 1
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-114 Score=818.46 Aligned_cols=347 Identities=52% Similarity=0.888 Sum_probs=340.5
Q ss_pred CCCCCCCCCCCcccccccccccCCCCchhhHHHHHHHhhcCCCCHHHHHHHh--hcCCccchhhhhhhHHhhhhcCCCCC
Q 018755 1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCI--ESSDLNFSRYGDTFFEVVFTGGRTQP 78 (351)
Q Consensus 1 ~~~~~kp~l~g~riktrkr~~~~~~dp~~frd~~~~~~~~~~~dle~~~k~l--~g~~ldy~ry~~~lf~i~~~Gg~l~p 78 (351)
|++.+||+|+|+||||||||+++++||++|||++|+||++++||||+|||+| .|++||||||||+||||+++||+++|
T Consensus 2 ~~k~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~p 81 (412)
T KOG2297|consen 2 SQKTEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQP 81 (412)
T ss_pred CccccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCC
Confidence 6889999999999999999999999999999999999999999999999999 58899999999999999999999999
Q ss_pred CCCCCCCCC-CCCceeecCCccchhhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhh
Q 018755 79 GTTKPDEGE-RHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQK 157 (351)
Q Consensus 79 gg~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~ 157 (351)
||+..|||+ +++||||+|++++|+|++|+|||||||||||||+|+|||+|+|+|+||++|++++|.|||++||++++
T Consensus 82 g~~~sddge~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~-- 159 (412)
T KOG2297|consen 82 GGVKSDDGERHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLS-- 159 (412)
T ss_pred CCccccccCccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh--
Confidence 999999997 55799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccchhhhhhccccCcchHHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHH----
Q 018755 158 LSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT---- 233 (351)
Q Consensus 158 ~~g~~~~~~l~~l~~d~lv~dg~al~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~---- 233 (351)
||++|++||++|.+||||++|++++|++.+|++|+.+++++++++.||+.+|++|||+|||||+|+.++|.++|.
T Consensus 160 -nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL 238 (412)
T KOG2297|consen 160 -NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGL 238 (412)
T ss_pred -CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhcccchhhHHHH
Q 018755 234 --------------------------------------------------------ILWDILMDAVQWSGKNQQQNANAA 257 (351)
Q Consensus 234 --------------------------------------------------------~i~~alm~~v~~~~~~~~~~~e~~ 257 (351)
+||+++|+.|+||++ ++++++++
T Consensus 239 ~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKk-eelva~qa 317 (412)
T KOG2297|consen 239 KELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKK-EELVAEQA 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchH-HHHHHHHH
Confidence 999999999999966 88899999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHHHHhH
Q 018755 258 LRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKAL 337 (351)
Q Consensus 258 ~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~rk~~ 337 (351)
+++++.|+|||..||+++.+++.+|+.+|.|||+|.++|+.|+.|+..||..||++||.|++||.+++.++|+++|++++
T Consensus 318 lrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqm 397 (412)
T KOG2297|consen 318 LRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQM 397 (412)
T ss_pred HHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCC
Q 018755 338 EPFVKWLEEAEEEE 351 (351)
Q Consensus 338 ~pFVeWLeEAEEEs 351 (351)
+|||+||++|||||
T Consensus 398 kkFVeWL~~AEEEs 411 (412)
T KOG2297|consen 398 KKFVEWLQNAEEES 411 (412)
T ss_pred HHHHHHHHhhhhcc
Confidence 99999999999995
No 2
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.5e-22 Score=206.19 Aligned_cols=155 Identities=23% Similarity=0.447 Sum_probs=136.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHH
Q 018755 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQ-NANAALRQVKT 263 (351)
Q Consensus 185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~-~~e~~~k~l~k 263 (351)
+-++.|++++++.+|++++|+|++||+ +|.++++|..+++.|+|+.+.....++.. +..++.+.+++
T Consensus 513 ~~s~~ra~Een~~~D~~vlEINslRla------------~N~s~~ev~~av~~all~~~~~~~~~~~~~~~~~~~~~~~~ 580 (673)
T KOG1461|consen 513 LGSLQRAFEENSDMDNLVLEINSLRLA------------YNVSLKEVAGAVFMALLKLILHQDHSSMNEVKRAALKVFTQ 580 (673)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhHHh------------hcCCHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 347889999999999999999999999 99999999999999999998654433221 55578899999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchh-hHHHHHhHHHHHH
Q 018755 264 WAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKG-RQTFVKALEPFVK 342 (351)
Q Consensus 264 ~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~g-k~~~rk~~~pFVe 342 (351)
|+|++.+|+++.+.|+++|.++|++|.++..+.+.+.++++.||+.||++||+|++||...+...+ ..+.+.++++||+
T Consensus 581 w~~l~~~y~ks~deqid~l~~led~~~e~~~~~~~~~~~v~~lY~~dil~EdaI~~W~~~~~~~~~~~~~~~~~~k~fv~ 660 (673)
T KOG1461|consen 581 WGPLLGNYIKSEDEQIDLLLALEDKCVESEELGPKAAKLVHYLYDYDILQEDAILSWSSQKAGDDEEDAVYNQQLKKFVD 660 (673)
T ss_pred hhHHhhhhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987788899999999999999999999999998444332 2567889999999
Q ss_pred HhhhcccCC
Q 018755 343 WLEEAEEEE 351 (351)
Q Consensus 343 WLeEAEEEs 351 (351)
||+||+|||
T Consensus 661 WL~easeE~ 669 (673)
T KOG1461|consen 661 WLKEASEEE 669 (673)
T ss_pred HHhhccccc
Confidence 999999885
No 3
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=99.87 E-value=3.5e-22 Score=158.87 Aligned_cols=83 Identities=39% Similarity=0.814 Sum_probs=77.8
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHHHHhHHHHHHHh
Q 018755 265 AQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWL 344 (351)
Q Consensus 265 ~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~rk~~~pFVeWL 344 (351)
+|||.+++++.++|+++|.++|.+|.++....+.|+.|++.|||.|||+||+|++||+++++..++++++++++|||+||
T Consensus 1 ~~ll~~~~~~~~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~~~~~~~~~~~~~~fv~WL 80 (83)
T smart00515 1 GPLLKFLAKDEEEQIDLLYAIEEFCVELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVSAEGKKKVRKNAKPFVTWL 80 (83)
T ss_pred ChHHHHHHCChHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCChHHHHHHHHHHhHHHHHH
Confidence 47899999999999999999999999876688999999999999999999999999999876668899999999999999
Q ss_pred hhc
Q 018755 345 EEA 347 (351)
Q Consensus 345 eEA 347 (351)
+||
T Consensus 81 ~eA 83 (83)
T smart00515 81 QEA 83 (83)
T ss_pred HcC
Confidence 987
No 4
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=99.85 E-value=2.2e-21 Score=154.90 Aligned_cols=76 Identities=41% Similarity=0.833 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCC---chhhHHHHHhHHHHHHHhhhcccCC
Q 018755 276 KLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN---PKGRQTFVKALEPFVKWLEEAEEEE 351 (351)
Q Consensus 276 ~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~---~~gk~~~rk~~~pFVeWLeEAEEEs 351 (351)
++|+++|.++|.||.+++++++.|++||+.|||.|||+|++|++||++..+ ..++.++|++++|||+||++|||||
T Consensus 2 ~~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~~~~~~~~~~~~~~r~~~~~fi~WL~eaeeE~ 80 (84)
T PF02020_consen 2 DDQVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAILEWYEDSKPAVDGEGRAKVRKQAQPFIEWLEEAEEES 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC-SSSSCHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhccCccC
Confidence 589999999999999999999999999999999999999999999999222 2466889999999999999999985
No 5
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2e-15 Score=146.35 Aligned_cols=96 Identities=28% Similarity=0.544 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCch----h
Q 018755 256 AALRQVKTWAQLLNTFCTN-AKLELELMYKVQMQCYE-DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK----G 329 (351)
Q Consensus 256 ~~~k~l~k~~~LL~~f~~~-~~~Q~~lL~alQ~~c~~-~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~----g 329 (351)
.+++.+.++.++|.+|+.+ .+.|..+|..|+.+|.. +..+++..+.||+.|||+||++||.|++|++++++.+ .
T Consensus 292 ~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~~w~~K~skk~vsk~~ 371 (400)
T KOG2767|consen 292 KIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVIIKWGEKPSKKYVSKEK 371 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccccchhh
Confidence 5678899999999999987 68999999999999986 4778899999999999999999999999999999853 2
Q ss_pred hHHHHHhHHHHHHHhhhcccCC
Q 018755 330 RQTFVKALEPFVKWLEEAEEEE 351 (351)
Q Consensus 330 k~~~rk~~~pFVeWLeEAEEEs 351 (351)
.+.+++.++|||+||++||+||
T Consensus 372 sk~i~e~a~Pfi~WL~~AESe~ 393 (400)
T KOG2767|consen 372 SKKIRENAKPFIEWLKNAESED 393 (400)
T ss_pred hhhhHhhhhHHHHHHHhccccc
Confidence 3789999999999999998763
No 6
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=96.41 E-value=0.091 Score=50.05 Aligned_cols=124 Identities=6% Similarity=0.136 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 018755 183 SFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVK 262 (351)
Q Consensus 183 ~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~ 262 (351)
.....++..+.+..+.+.+...+....-.. +........-+..+++++++... . .... .+...|+
T Consensus 12 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~--------~~~~~~~~~~~i~v~~q~ll~~G----S--kS~S-H~~~~le 76 (253)
T PF09090_consen 12 ALAQKLLDLIRKKAPPEEISELLEEIEEPA--------EEHGSDFDKFVIDVFVQCLLHIG----S--KSFS-HVLSALE 76 (253)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHTTS--------------------HHHHHHHHHHHHHHT----T--TSHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccccc--------cccccchhhHHHHHHHHHHHHhc----C--chHH-HHHHHHH
Confidence 345667777777777888877777665540 00000111223345566655442 1 1233 6678999
Q ss_pred HHHHHHHHH-hcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcC
Q 018755 263 TWAQLLNTF-CTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKG 324 (351)
Q Consensus 263 k~~~LL~~f-~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~ 324 (351)
+|.+.|..+ +.+...|..+|.++-.|..++|... ..|+..|-+.+||+-.+|+.|-=++
T Consensus 77 ry~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~---~li~dkll~~~ii~~~~Vv~w~f~~ 136 (253)
T PF09090_consen 77 RYKEVLKELEAESEEAQFWILDAVFRFWKNNPQMG---FLIIDKLLNYGIISPSAVVNWVFSP 136 (253)
T ss_dssp HTHHHHHHH-TSSHHHHHHHHHHHHHHHTT-HHHH---HHHHHHHHHTTSS-HHHHHHHHTSG
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHhcCCcee---hHHHHHHHhcCCCCHHHHHHHHcCc
Confidence 999999999 8888999999999999998888765 6679999999999999999998544
No 7
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=88.40 E-value=16 Score=40.12 Aligned_cols=273 Identities=11% Similarity=0.116 Sum_probs=154.5
Q ss_pred CCCchhhHHHHHHHhhcCCCCHHHHHHHhhc--CCccchhhhhhhHHhhhhcCCCCCCCCCCCCC---------CC----
Q 018755 24 PLDPAAFSDAVVQIYLDNAGDLELIAKCIES--SDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEG---------ER---- 88 (351)
Q Consensus 24 ~~dp~~frd~~~~~~~~~~~dle~~~k~l~g--~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~---------~~---- 88 (351)
..|--.|+|-|+..++...++=-+.|..|.. -+--|-.|++-.+|++|+-=+.-|--++++=- +.
T Consensus 309 si~rflfe~~i~dii~sl~fnRKecA~~l~~l~~~f~~~p~eylivEtIfgell~LP~~~~~~iyy~slLiElCK~~P~~ 388 (759)
T KOG1104|consen 309 SIERFLFEEIILDIIESLEFNRKECARQLLSLPVKFKAIPIEYLIVETIFGELLRLPTPPYKTIYYTSLLIELCKLQPKA 388 (759)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHcCcccccCccHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhCccc
Confidence 3455689999999999876666677888832 22223467778888777544444443332210 00
Q ss_pred -CC------ceeecCCc--cchhhhhHHHHHHHHHhhhhhH----------HHHhHH----HHHHHHHHhhccChhhhHH
Q 018755 89 -HS------YSIIDCEP--QREAILPSVIYIQKILRRRPFL----------IKNLEN----VTRRFMQSLELFEENERKK 145 (351)
Q Consensus 89 -~~------~~v~~~~~--~~~~~~~~~~~~~kl~rr~kyl----------~k~~e~----~~~~~l~~~~~f~~~~r~k 145 (351)
++ =|+|.--+ +.+.+..|+.+|--=|-...|- .+..+. .++.+++==-.++--+|.+
T Consensus 389 lpqV~aqa~r~lY~rldsm~~~c~dR~idWFShHLSNF~F~w~W~eW~~~l~~d~~~pk~~FvreviqkelrLsy~~rI~ 468 (759)
T KOG1104|consen 389 LPQVLAQAVRILYMRLDSMDTECFDRFIDWFSHHLSNFQFRWKWNEWADCLGLDFEHPKPNFVREVIQKELRLSYYQRIK 468 (759)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCcceechhhhhhhcCCCCcCcchhHHHHHHHHHHHHHHHHHHH
Confidence 01 03333222 4446666777665544433221 111110 1222222222223334433
Q ss_pred HHHHHHHHHHhhhcCCCCcccchhh--hhhccccCcchHHHHHHHHHHHHhhCCHHHHHHHHHhcC-chhhhhhccCCCC
Q 018755 146 LAIFTALAFSQKLSGLPPETVFQPL--LKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGK-MEDNLLDFFPSSK 222 (351)
Q Consensus 146 lA~~~al~~~~~~~g~~~~~~l~~l--~~d~lv~dg~al~f~~~~~~~~l~e~~~d~l~~eL~~lk-m~~~l~~ffP~~k 222 (351)
=+.=+.+ + .++|++.+... ..|.--.--.++ +...+..++....+.+.+..+|++-- .+ ...
T Consensus 469 dslP~~~--~----~l~P~~~~pny~y~~Ee~~~~~~~~-~~~~l~~~~~~k~~~e~~~~iLk~~~~~~--~~~------ 533 (759)
T KOG1104|consen 469 DSLPTLL--A----KLLPPPPLPNYKYTDEEDPVLPQSL-VAVQLIVAFREKATAEEIVNILKSEDESE--IGS------ 533 (759)
T ss_pred HhhhHHH--H----HhCCCCCCCceeeecccCccccchH-HHHHHHHHHhccCCHHHHHHHHhcCcccc--ccC------
Confidence 3333333 2 35666666542 222211111122 45666777777888999999999111 11 000
Q ss_pred CccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHhhhchHHHHHHHH
Q 018755 223 RSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKL-ELELMYKVQMQCYEDAKLMKLFPE 301 (351)
Q Consensus 223 r~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~~~LL~~f~~~~~~-Q~~lL~alQ~~c~~~~~~~~~f~~ 301 (351)
.|. -.+.++++++++.. .+ ... .+...+.+|+.+|.++|.+... |..+|.++=.+...|+..+ ..
T Consensus 534 -~n~---~~i~lfvq~~l~lG---SK---SfS-H~f~~lek~~~vfk~l~~~~e~~q~~vl~~vft~Wk~n~Qm~---~v 599 (759)
T KOG1104|consen 534 -FNR---LKIILFVQTLLDLG---SK---SFS-HAFSALEKYHTVFKKLCEDSETKQIIVLEAVFTFWKANPQMG---FV 599 (759)
T ss_pred -Ccc---eehhhHHHHHHHhc---cc---hhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcCchhh---HH
Confidence 221 13336677777663 11 122 5577899999999999988765 9999999988888877654 44
Q ss_pred HHHHHhhccccchhhHhhhhhcCC
Q 018755 302 IVRSLYDQDVLAEDTILYWFRKGT 325 (351)
Q Consensus 302 ILk~LYd~DVveEEaIl~W~~~~~ 325 (351)
++..|-...||+-.+|..|-=++.
T Consensus 600 ~~Dkml~~~ii~~~aVv~WiF~~~ 623 (759)
T KOG1104|consen 600 LTDKMLKYQIIDCSAVVRWIFSEE 623 (759)
T ss_pred HHHHHhccccccHHHHHHHhcCHH
Confidence 577777889999999999985544
No 8
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=83.45 E-value=8.1 Score=41.04 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccccCcchH
Q 018755 103 ILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVL 182 (351)
Q Consensus 103 ~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~dg~al 182 (351)
-|=|--+-.++++=++-++-.||+..+.--..|+.++-+.-+-+|.|.|.+++ ..-+|..||.-+ .|.++...-
T Consensus 503 ~kFYglL~eRfc~l~r~~q~~fe~~f~q~YstIhr~EtnkLRnlakffahLls---td~lpw~vl~~i---kLTEEdTts 576 (739)
T KOG2140|consen 503 EKFYGLLGERFCMLHREWQEAFEKCFKQQYSTIHRYETNKLRNLAKFFAHLLS---TDALPWDVLACI---KLTEEDTTS 576 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---ccccchHHHHHh---hcccccCCc
Confidence 34445555677777777888888877666666999999999999999999999 999999999742 344444433
Q ss_pred H---HHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHH
Q 018755 183 S---FITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFS 229 (351)
Q Consensus 183 ~---f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~ 229 (351)
+ |+--+|+.+.+..|.+.|.+-|+..-|...|-.+||-....|..|+
T Consensus 577 ssRIfiKilFqELve~lGl~~L~~RL~dptl~~~l~glFP~dnp~n~Rfs 626 (739)
T KOG2140|consen 577 SSRIFIKILFQELVEALGLDKLNERLNDPTLQPKLEGLFPRDNPRNTRFS 626 (739)
T ss_pred cceehHHHHHHHHHHHhChHHHHHHhcCcchhhhhhccCcCCCcccceee
Confidence 3 8888999999999999999999999998889999999877776664
No 9
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=78.84 E-value=6 Score=32.33 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccCh---hhhHHHHHHHHHHHHhhhcCCCC
Q 018755 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEE---NERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~---~~r~klA~~~al~~~~~~~g~~~ 163 (351)
.-..|.+++..|..+...-...|+.-+.+++..++-.+- .....+|.+.|.+++ +|.+|
T Consensus 52 ~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~---~~~l~ 113 (113)
T smart00544 52 YREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS---DGILP 113 (113)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH---cCCCC
Confidence 456788899999988888899999999999999998855 688999999999999 99886
No 10
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=76.22 E-value=8.3 Score=31.36 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccChh---hhHHHHHHHHHHHHhhhcCCCC
Q 018755 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEEN---ERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~---~r~klA~~~al~~~~~~~g~~~ 163 (351)
.-..|..++..|+.+...-...++.-+.+++..+.-..-. .-..+|.++|.+++ .|.+|
T Consensus 52 ~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~---~~~lp 113 (113)
T PF02847_consen 52 YREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA---DGILP 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTSS-
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH---cCCcC
Confidence 4667888999999999888888888888899988877544 78999999999999 99887
No 11
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=65.97 E-value=69 Score=25.81 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 018755 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTW 264 (351)
Q Consensus 185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~ 264 (351)
+..++..|....+.+++...++.+++. ...+++...++...++. + ...-+.+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~--------------~~~~~vv~~~l~~~le~-----~---------~~~r~~~ 56 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP--------------SQHHEVVKVILECALEE-----K---------KSYREYY 56 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G--------------GGHHHHHHHHHHHHHTS-----S---------HHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC--------------ccHHHHHHHHHHHHhhc-----c---------HHHHHHH
Confidence 346788899999999999999998775 33445554444444433 1 0122456
Q ss_pred HHHHHHHhcCh-HHHHHHHHHHHH-------HhhhchHHHHHHHHHHHHHhhcccc
Q 018755 265 AQLLNTFCTNA-KLELELMYKVQM-------QCYEDAKLMKLFPEIVRSLYDQDVL 312 (351)
Q Consensus 265 ~~LL~~f~~~~-~~Q~~lL~alQ~-------~c~~~~~~~~~f~~ILk~LYd~DVv 312 (351)
..|+..++... -.+-++..+++. ...+.|.....+..++-.+...|+|
T Consensus 57 ~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~l 112 (113)
T PF02847_consen 57 SKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIADGIL 112 (113)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHcCCc
Confidence 66777777543 233344444443 3444466777888888888888876
No 12
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=54.70 E-value=73 Score=26.74 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=46.1
Q ss_pred cchhhhhHHHHHHHHHhhhhh----HHHHhHHHHHHHHHHhh-ccChh--hhHHHHHHHHHHHHhhhcCCCCcccchhhh
Q 018755 99 QREAILPSVIYIQKILRRRPF----LIKNLENVTRRFMQSLE-LFEEN--ERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (351)
Q Consensus 99 ~~~~~~~~~~~~~kl~rr~ky----l~k~~e~~~~~~l~~~~-~f~~~--~r~klA~~~al~~~~~~~g~~~~~~l~~l~ 171 (351)
+.+.+..-.+...+||||.+- +...-++-+ +.|..|+ .|+.+ +..+...++|++++ .|..+-.-|.
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~-~~Ll~L~~~f~~~~Fe~~R~~alval~v~------~P~~~~~~L~ 90 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELL-KALLHLQNKFDIENFEELRQNALVALVVA------APEKVAPYLT 90 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHH-HHHHH---TT--TTTTHHHHHHHHHHHHH------SGGGHHH-HH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-HHHhhccccCCccCHHHHHHHHHHHHHHH------hhHHHHHHHH
Confidence 567788888899999999997 444444444 4444444 46544 56889999999988 6777766565
Q ss_pred hhccccCcchHHHHHHHHH
Q 018755 172 KDNLVGKGLVLSFITDFFK 190 (351)
Q Consensus 172 ~d~lv~dg~al~f~~~~~~ 190 (351)
+.- ...+.++.-=..++.
T Consensus 91 ~~f-~~~~~Sl~qR~~iL~ 108 (114)
T PF10193_consen 91 EEF-FSGDYSLQQRMSILS 108 (114)
T ss_dssp HHH-TTS---THHHHHHHH
T ss_pred HHH-hcCCCCHHHHHHHHH
Confidence 543 335555554444443
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=39.17 E-value=6.1e+02 Score=28.73 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHhhh---chHHHHHHHHHHHH------Hhhccccch--hhHhhhhhcCCCchhhHHHHHhHHHHHHH
Q 018755 275 AKLELELMYKVQMQCYE---DAKLMKLFPEIVRS------LYDQDVLAE--DTILYWFRKGTNPKGRQTFVKALEPFVKW 343 (351)
Q Consensus 275 ~~~Q~~lL~alQ~~c~~---~~~~~~~f~~ILk~------LYd~DVveE--EaIl~W~~~~~~~~gk~~~rk~~~pFVeW 343 (351)
-.-|+..-.|+|-+..+ |+.+....|-+++. -|+-|++++ |+|...|.+.-++.+..-+-..+++|++-
T Consensus 513 lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlki 592 (970)
T COG5656 513 LPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKI 592 (970)
T ss_pred cchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHH
Confidence 36888888999999886 35554444544444 378899987 78999998888776654444445555543
No 14
>PRK10167 hypothetical protein; Provisional
Probab=37.43 E-value=76 Score=28.75 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=56.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc-ChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccccCc
Q 018755 101 EAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF-EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKG 179 (351)
Q Consensus 101 ~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f-~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~dg 179 (351)
+-+..|.+.|.+.+.+.+ =.+..=|++..+..|++.. +.+||.-+..++.-.- +|.+|..+...+++.++.+-+
T Consensus 70 ~~~~~Y~~~lm~al~~~~-t~~~~~NvL~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr----~g~vpl~vpltlL~h~~~~y~ 144 (169)
T PRK10167 70 DFYNQYRQRVIVLLSHPA-NVRDHTNVLMHVQGYFRPHIDSTERQQLAALIDSYR----RGEQPLLAPLMRIKHYMALYP 144 (169)
T ss_pred HHHHHHHHHHHHHHcCCC-CcchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHCC
Confidence 357899999999999888 6677788899999999875 8888888876666543 599998887766555544444
No 15
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=37.24 E-value=2.4e+02 Score=31.40 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccccCcchHHHH
Q 018755 106 SVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFI 185 (351)
Q Consensus 106 ~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~dg~al~f~ 185 (351)
|.-+-+|+--+++-+++.|.=.+=-.+.=++.-+..++.-||.++|.+++ +-.+|.+||-.. |-.--+....-|+
T Consensus 672 Ya~lA~KfCe~~~~~~~tfQF~~WD~f~ele~ls~~ri~nLa~l~a~Li~---~~~lsLtVLK~V--dfm~l~~~~~~fl 746 (822)
T KOG2141|consen 672 YALLALKFCEFNKNLKKTFQFALWDRFKELEQLSLFRISNLAKLLASLIS---NAVLSLTVLKHV--DFMELNARRTTFL 746 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcchhhHhHHHHHHHHHHH---hcccceeeeeec--cHhhcChHHHHHH
Confidence 45556666667777777766544444444555677888999999999999 999999999731 1011223333455
Q ss_pred HHHHHHHHhhCCHHHHHHHH
Q 018755 186 TDFFKEYLVDNSLDDLIAIL 205 (351)
Q Consensus 186 ~~~~~~~l~e~~~d~l~~eL 205 (351)
-.+|-.++-++..+.+...+
T Consensus 747 ~~~l~~l~l~~~~~~v~~~f 766 (822)
T KOG2141|consen 747 KKLLFGLILEPEEKDVFQLF 766 (822)
T ss_pred HHHHHHHHhcchHHHHHHHH
Confidence 55555555555544443333
No 16
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=35.83 E-value=97 Score=25.90 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=54.7
Q ss_pred hhhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc-ChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhcccc
Q 018755 101 EAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF-EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVG 177 (351)
Q Consensus 101 ~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f-~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~ 177 (351)
+.+..|.+.|.+.+.+-+ =.+..=|++.++..|++.. +++||.-+...+...- +|.+|..++..+++....+
T Consensus 29 ~~~~~Y~~~l~~al~~~~-~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr----~g~i~l~~~l~~L~~~~~r 101 (117)
T PF08349_consen 29 EVFEEYEELLMEALSKPP-TRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYR----EGKIPLSVPLTLLKHLARR 101 (117)
T ss_pred HHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----cCCccHHHHHHHHHHHHHH
Confidence 468899999999998887 5667778889999999875 7778888887766643 5888877777555544443
No 17
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=35.73 E-value=36 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=28.2
Q ss_pred CchhhHHHHHHHhhcCCC-----CHHHHHHH-h-hcCCccchhhhhhhHHhhh
Q 018755 26 DPAAFSDAVVQIYLDNAG-----DLELIAKC-I-ESSDLNFSRYGDTFFEVVF 71 (351)
Q Consensus 26 dp~~frd~~~~~~~~~~~-----dle~~~k~-l-~g~~ldy~ry~~~lf~i~~ 71 (351)
.+.+|.+||++||...|| .+-.+.+. | .-..++|.--+-.++..++
T Consensus 10 ~~vsf~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~ 62 (79)
T PF14821_consen 10 PPVSFKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFL 62 (79)
T ss_dssp CEE-HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHC
T ss_pred CCcCHHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999998886 55555554 4 3366777766666666666
No 18
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=35.08 E-value=38 Score=32.48 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=38.0
Q ss_pred HHhhhhcCCCCCCCCCCCCC-CCCCceeecC--CccchhhhhHHHHHHHHHhhh
Q 018755 67 FEVVFTGGRTQPGTTKPDEG-ERHSYSIIDC--EPQREAILPSVIYIQKILRRR 117 (351)
Q Consensus 67 f~i~~~Gg~l~pgg~~~~~~-~~~~~~v~~~--~~~~~~~~~~~~~~~kl~rr~ 117 (351)
|| ++|+|+|-|||.-+.|- ++.++.+..+ ..++|.|-..+|-+-|++--.
T Consensus 182 le-~lasGillp~~~gl~DPcE~~~~~~~~~lt~qq~e~it~sAQ~~LRllafg 234 (248)
T PF07528_consen 182 LE-CLASGILLPGSPGLRDPCEKDPVDVLDTLTLQQREDITSSAQTALRLLAFG 234 (248)
T ss_pred HH-HHhCceecCCCCCCcCCCCCCCceeeccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 44 47999999999877753 4668888885 557889999999888777433
No 19
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=33.72 E-value=2.3e+02 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.9
Q ss_pred hHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccch
Q 018755 119 FLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQ 168 (351)
Q Consensus 119 yl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~ 168 (351)
|=||.|...+++++...+.-+++ .|-+.++|+... -..+|.+++.
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~--~k~~yL~ALs~l---l~~vP~~vl~ 360 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDE--IKSNYLTALSHL---LKNVPKSVLL 360 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChh--hHHHHHHHHHHH---HhhCCHHHHH
Confidence 77999999999998888876666 677778887665 4567877665
No 20
>PHA02690 hypothetical protein; Provisional
Probab=33.72 E-value=41 Score=26.99 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhhcCCccchhhhhhhHHhhhh
Q 018755 42 AGDLELIAKCIESSDLNFSRYGDTFFEVVFT 72 (351)
Q Consensus 42 ~~dle~~~k~l~g~~ldy~ry~~~lf~i~~~ 72 (351)
.+=|||+-..|+||+.--|+----|||.+++
T Consensus 21 rrYLeAIqrhlEgs~plLR~~~RlLfDL~lT 51 (90)
T PHA02690 21 RRYLEAIQRHLEGSTPLLRQMWRLLFDLLLT 51 (90)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999998875
No 21
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=33.48 E-value=1.1e+02 Score=26.89 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=44.1
Q ss_pred ccchhhhhHHHHHHHHHhhhhhHHHHhHHHH----HHHHHHhhcc-ChhhhHHHHHHHHHHHHhhhcCCCC
Q 018755 98 PQREAILPSVIYIQKILRRRPFLIKNLENVT----RRFMQSLELF-EENERKKLAIFTALAFSQKLSGLPP 163 (351)
Q Consensus 98 ~~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~----~~~l~~~~~f-~~~~r~klA~~~al~~~~~~~g~~~ 163 (351)
++.++++.|+.-.-.+-|.+|..-|.|=.|+ +.+-.+++.. .+.-+.+ +.....|+. .|.+.
T Consensus 20 dP~~aL~~YI~~k~~~s~~~P~~Srlfa~Eii~Gap~L~~~l~~~l~~~~~~~-~~~I~~Wi~---~G~i~ 86 (143)
T PF08362_consen 20 DPAEALRAYIRAKMEYSRDHPEASRLFANEIIQGAPHLKDYLRERLRPWVDRK-VAVIERWIA---QGKIA 86 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSTTTHHHHHTHHHHHHHHH-HHHHHHHHH---TTSS-
T ss_pred CHHHHHHHHHHHHHHHHHHCchhhHHHHHHHHcCchhhHHHHHHHHHHHHHHH-HHHHHHHHH---CCCCC
Confidence 3566999999999999999999999998874 5666666443 3333344 446677788 88874
No 22
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=33.01 E-value=4.6e+02 Score=32.07 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=21.3
Q ss_pred HhhhhhcCCCchhhHHHHHhHHHHHHHhhh
Q 018755 317 ILYWFRKGTNPKGRQTFVKALEPFVKWLEE 346 (351)
Q Consensus 317 Il~W~~~~~~~~gk~~~rk~~~pFVeWLeE 346 (351)
=-+|.+.+.... ...||--++-||-|-+.
T Consensus 3399 ra~wlk~p~~da-delfrmvaevfi~w~ks 3427 (5019)
T KOG2243|consen 3399 RAKWLKEPDADA-DELFRMVAEVFILWCKS 3427 (5019)
T ss_pred hhhhccCCCCCH-HHHHHHHHHHHHhhhcc
Confidence 357887766543 37788889999999764
No 23
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=32.76 E-value=3.5e+02 Score=25.59 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=18.8
Q ss_pred HHHhhccChhhhHHHHHHHHHHHHhhhcCCCCc
Q 018755 132 MQSLELFEENERKKLAIFTALAFSQKLSGLPPE 164 (351)
Q Consensus 132 l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~ 164 (351)
=+|++||.|++ ++-+++-|+|-| .|.=|.
T Consensus 56 d~fm~GY~p~~-~~~~If~Alc~a---~~~dp~ 84 (216)
T PF11264_consen 56 DRFMQGYPPEE-DKDSIFNALCQA---LGFDPE 84 (216)
T ss_pred HHHhcCCCChh-HHHHHHHHHHHH---cCCCHH
Confidence 34556664443 566788888888 676663
No 24
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=31.28 E-value=2.6e+02 Score=24.68 Aligned_cols=102 Identities=10% Similarity=0.077 Sum_probs=70.4
Q ss_pred hhHHHHHHHhhcCCCCHHHHHHHh-hcCCc-cchhhhhhhHHhhh---------------hcCCCCCCCCCCCCCCCCCc
Q 018755 29 AFSDAVVQIYLDNAGDLELIAKCI-ESSDL-NFSRYGDTFFEVVF---------------TGGRTQPGTTKPDEGERHSY 91 (351)
Q Consensus 29 ~frd~~~~~~~~~~~dle~~~k~l-~g~~l-dy~ry~~~lf~i~~---------------~Gg~l~pgg~~~~~~~~~~~ 91 (351)
.|+..|.+.+-.+.|-+.++..|| .+-.. .+..+.+.|-+|-+ -|| .|+|..- ..+|
T Consensus 20 ~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~--~~~g~pw----~~~y 93 (156)
T cd01051 20 RFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLK--DSQGVPW----TAAY 93 (156)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCcC----CCcc
Confidence 689999999988889999999999 44444 78999999988743 133 5666422 2344
Q ss_pred eeecCCccchhhhhHHHHHHHHHhhhhhHHHHhHH-HHHHHHHHhhc
Q 018755 92 SIIDCEPQREAILPSVIYIQKILRRRPFLIKNLEN-VTRRFMQSLEL 137 (351)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~kl~rr~kyl~k~~e~-~~~~~l~~~~~ 137 (351)
|-.+.+..+.++.=+.-=++-+.+|..+....+| .++.+|.+|-.
T Consensus 94 -v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~ 139 (156)
T cd01051 94 -IQSSGNLVADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSFLLV 139 (156)
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223333345555555556777888888888877 58888888754
No 25
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.45 E-value=51 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHhhccccchhhHhh
Q 018755 300 PEIVRSLYDQDVLAEDTILY 319 (351)
Q Consensus 300 ~~ILk~LYd~DVveEEaIl~ 319 (351)
...|+.||+.++|+++.+.+
T Consensus 5 L~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 35689999999999998753
No 26
>PF13972 TetR: Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=29.47 E-value=1.5e+02 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=27.8
Q ss_pred cchhhhhHHHHHHHHHhhhhhHHHHhHHHHHH
Q 018755 99 QREAILPSVIYIQKILRRRPFLIKNLENVTRR 130 (351)
Q Consensus 99 ~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~ 130 (351)
+.+.+-.|....-.+|.||+|+-+-+-+-+.+
T Consensus 20 ~le~~~~~l~~~f~~~w~YRF~~~dl~~Ll~~ 51 (146)
T PF13972_consen 20 SLEDLWNYLDSVFELMWRYRFFYRDLPDLLRR 51 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHSHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHccHHHHHHh
Confidence 77899999999999999999999998775533
No 27
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=27.70 E-value=2.8e+02 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 018755 261 VKTWAQLLNTFCTNAKLELELMYKVQMQC 289 (351)
Q Consensus 261 l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c 289 (351)
+..-.-++.++++++..|-.+|.|+|..-
T Consensus 144 i~dv~~mItnmVkNqalq~~llrAvqviE 172 (196)
T PF15080_consen 144 IRDVTFMITNMVKNQALQDGLLRAVQVIE 172 (196)
T ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56666789999999999999999998653
No 28
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=27.41 E-value=1.5e+02 Score=24.91 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=43.1
Q ss_pred HHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccccCcchHHHHHHH----HHHH---HhhCCHHHH
Q 018755 129 RRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDF----FKEY---LVDNSLDDL 201 (351)
Q Consensus 129 ~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~dg~al~f~~~~----~~~~---l~e~~~d~l 201 (351)
-.=|..+.+|++. -+..|.+.-++|+ ||.-+.++.+.|.. |- |+++-.+++.+ |.++ ..+.+.+++
T Consensus 17 aEkL~~l~NFnED-v~YVAEyIvlLis---Nggs~esivqELss--LF-D~vs~~~l~~VVQtaF~ale~Lq~Ge~~e~i 89 (107)
T PF11517_consen 17 AEKLKTLPNFNED-VNYVAEYIVLLIS---NGGSVESIVQELSS--LF-DSVSTEALTDVVQTAFFALEALQQGETVENI 89 (107)
T ss_dssp HHHHTTSTT--SS-HHHHHHHHHHHHH---TT--HHHHHHHHHH--H--TTS-HHHHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHccccCcccc-HHHHHHHhheeee---CCCCHHHHHHHHHH--HH-hccCHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 3446778888754 4789999999999 99999999886543 22 77777777663 3333 334446666
Q ss_pred HHHHH
Q 018755 202 IAILK 206 (351)
Q Consensus 202 ~~eL~ 206 (351)
..-++
T Consensus 90 v~Ki~ 94 (107)
T PF11517_consen 90 VSKIR 94 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 29
>KOG3685 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=1e+03 Score=27.36 Aligned_cols=186 Identities=14% Similarity=0.199 Sum_probs=112.3
Q ss_pred cchhhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhh--------cc------ChhhhHHHHHHHHHHHHhhhcCCCCc
Q 018755 99 QREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLE--------LF------EENERKKLAIFTALAFSQKLSGLPPE 164 (351)
Q Consensus 99 ~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~--------~f------~~~~r~klA~~~al~~~~~~~g~~~~ 164 (351)
|.|+|--++-++..+|-|-|-|-.+| +.++|+... .| -+..-...|.-.-+++- -.+.|.
T Consensus 716 deEtigl~iViL~TFiHreP~mAAP~---L~~Il~~v~Rl~~sst~~wq~e~m~vpana~~VAkQflRcvl---HqLapn 789 (1338)
T KOG3685|consen 716 DEETIGLFIVILGTFIHREPAMAAPF---LPEILTMVSRLCLSSTHAWQGENMPVPANAQAVAKQFLRCVL---HQLAPN 789 (1338)
T ss_pred chhhhhhHHHHHHHHhccCcccccch---HHHHHHHHHHHHcCCccccccccCCCCcchHHHHHHHHHHHH---HHhCcc
Confidence 56688889999999999988777765 334443332 23 33344555544445555 567899
Q ss_pred ccchhhhhhccccCcchHHHHHHHHHHHHhhCCHHHHHHHHHhcCc------hhhhhhccCCCCC--ccccHHhHHHHHH
Q 018755 165 TVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKM------EDNLLDFFPSSKR--SAEGFSEHFTILW 236 (351)
Q Consensus 165 ~~l~~l~~d~lv~dg~al~f~~~~~~~~l~e~~~d~l~~eL~~lkm------~~~l~~ffP~~kr--~n~~~~evf~~i~ 236 (351)
.++..|+....-++|..+.-+..-+..|-+-.+...+...+.++.- .+.+.-| -+|-. ....-.++-.++|
T Consensus 790 gIflQlFqt~i~~~~~f~rsiA~sL~DF~eLss~~~i~~l~E~L~~kkslP~~~~~i~~-~enla~~~v~~p~d~~~~~W 868 (1338)
T KOG3685|consen 790 GIFLQLFQTQIKIRHHFFRSIAKSLQDFQELSSTSPIYMLCESLTSKKSLPIEQLPIIF-AENLALQCVPTPADVGLAVW 868 (1338)
T ss_pred cchHHHHhhcCCCCchHHHHHHHHHhhhhhccchHHHHHHHHhhcccccCCcccchhHH-HHhhhheeeecccCCcccHH
Confidence 9999999988889999988888888888888876666555554411 1111100 00100 0011112222666
Q ss_pred HHHHHHHH----------hhcccchhh---HH---------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh
Q 018755 237 DILMDAVQ----------WSGKNQQQN---AN---------AALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYE 291 (351)
Q Consensus 237 ~alm~~v~----------~~~~~~~~~---~e---------~~~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~ 291 (351)
+.+|...+ .+..+-+.. .. ..+.....+..++.-.+.+..-.++-|+.++..|+.
T Consensus 869 s~~~~~~etff~~~~~imP~~~~~e~~l~IM~~~lkl~~~~~t~sl~e~Fsk~ls~~vq~a~~~l~~L~elCtlc~R 945 (1338)
T KOG3685|consen 869 SQAMQAMETFFRQVIVIMPSLTNAEYMLDIMAATLKLNCVPKTLSLPEAFSKILSYCVQHANLELQTLYELCTLCIR 945 (1338)
T ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 66665432 122221111 00 112235667778887788888888999999999984
No 30
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=25.38 E-value=3.8e+02 Score=22.20 Aligned_cols=84 Identities=8% Similarity=-0.056 Sum_probs=54.3
Q ss_pred hhhHHH-HHHHHHhhhhhHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccc-hh---hhhhcccc
Q 018755 103 ILPSVI-YIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVF-QP---LLKDNLVG 177 (351)
Q Consensus 103 ~~~~~~-~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l-~~---l~~d~lv~ 177 (351)
-+.|++ ++.-.+|++.+|...++..+++-+ ..-++..|.-|-+.++-++- .. +|+.+. .. +.+ .+.
T Consensus 37 d~~~~~~lv~g~~r~~~~ld~~i~~~l~~~~---~~~~~~~~~iLr~a~~el~~---~~-~p~~avvneaVelak-~~~- 107 (126)
T cd00620 37 DRGLATELVYGTLRWLALLDWIINPLLKKPD---VGKDPDVRNLLRLGLYQLLY---LD-VPPHAAVDETVEIAK-IRK- 107 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCc---cccCHHHHHHHHHHHHHHHh---cC-CCchHHHHHHHHHHH-HhC-
Confidence 356665 889999999999999888765421 22356677777777777766 45 454443 22 233 222
Q ss_pred CcchHHHHHHHHHHHHhh
Q 018755 178 KGLVLSFITDFFKEYLVD 195 (351)
Q Consensus 178 dg~al~f~~~~~~~~l~e 195 (351)
+.-+-.|+..+++.+..+
T Consensus 108 ~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 108 DLGRAGLVNAVLRRFERE 125 (126)
T ss_pred CCchhhHHHHHHHHHhcc
Confidence 234457888888887764
No 31
>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins. This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].
Probab=25.15 E-value=3.4e+02 Score=23.77 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHhhccccchhhHhh
Q 018755 256 AALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYE-------DAKLMKLFPEIVRSLYDQDVLAEDTILY 319 (351)
Q Consensus 256 ~~~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~-------~~~~~~~f~~ILk~LYd~DVveEEaIl~ 319 (351)
..+..+..|...+.+.-..++.| +=.|++.|+.. ++++...|..-+-.||+.++|+..+|..
T Consensus 67 ~EKefM~lWN~fv~k~r~~aD~~--ip~ac~~Fv~~~~~~L~~~~~l~~~f~lHl~~L~d~glLd~~~i~~ 135 (140)
T PF09733_consen 67 EEKEFMKLWNSFVMKQRVIADGH--IPWACEAFVREHGQWLVEKPNLRREFLLHLINLWDFGLLDARTIDE 135 (140)
T ss_pred HHHHHHHHHHHHHHHccCcchHH--HHHHHHHHHHHhHHHHhhChhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 33556677777775443333333 34455555543 3577788888899999999999998864
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=24.49 E-value=3.3e+02 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccch
Q 018755 128 TRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQ 168 (351)
Q Consensus 128 ~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~ 168 (351)
|+.+|-||+.--..-+.-=|.-|+.=+.|++--+...++|+
T Consensus 509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlp 549 (1172)
T KOG0213|consen 509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLP 549 (1172)
T ss_pred cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhh
Confidence 56777777776555555556666666665553333445554
No 33
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.09 E-value=2.3e+02 Score=22.27 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHH--------HHhHHHHHHHhhhcc
Q 018755 298 LFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTF--------VKALEPFVKWLEEAE 348 (351)
Q Consensus 298 ~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~--------rk~~~pFVeWLeEAE 348 (351)
....|+..||..+|++++..-.=..+++...-...+ ......|+++|++-+
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~e~~ 74 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFVRSWGASCKDIFYQILREEE 74 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 346789999999999999877776666543211221 123445888887643
No 34
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=24.00 E-value=1.8e+02 Score=32.03 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=63.2
Q ss_pred hhHHHHHHHhhcCCCCHHHHHHHhhcCCccchhh-------------hhh--hHHhhh-------hcC------------
Q 018755 29 AFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRY-------------GDT--FFEVVF-------TGG------------ 74 (351)
Q Consensus 29 ~frd~~~~~~~~~~~dle~~~k~l~g~~ldy~ry-------------~~~--lf~i~~-------~Gg------------ 74 (351)
.|||+|..-+....++.+.++..|.||.--|+++ .|. |+|.+- +.|
T Consensus 401 ~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S 480 (688)
T TIGR02100 401 RYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYS 480 (688)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhcccccccccccccc
Confidence 3999999888887789999999998875555544 443 888754 222
Q ss_pred -----------------------------CCCCCCCCCCCC---------CCCCcee------ecCC--ccchhhhhHHH
Q 018755 75 -----------------------------RTQPGTTKPDEG---------ERHSYSI------IDCE--PQREAILPSVI 108 (351)
Q Consensus 75 -----------------------------~l~pgg~~~~~~---------~~~~~~v------~~~~--~~~~~~~~~~~ 108 (351)
++.||--.+.-| ...+||- |.=. .....+..|++
T Consensus 481 ~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k 560 (688)
T TIGR02100 481 WNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTK 560 (688)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHH
Confidence 456665555433 2236664 2212 22336888888
Q ss_pred HHHHHHhhhhhHHHH
Q 018755 109 YIQKILRRRPFLIKN 123 (351)
Q Consensus 109 ~~~kl~rr~kyl~k~ 123 (351)
-+.+|.|+||-|...
T Consensus 561 ~Li~lRk~~~~l~~~ 575 (688)
T TIGR02100 561 KLIALRKAHPVLRRE 575 (688)
T ss_pred HHHHHHHhCchhccc
Confidence 888998998866543
No 35
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=23.12 E-value=6.4e+02 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhccccchhhHhhhhhcC
Q 018755 297 KLFPEIVRSLYDQDVLAEDTILYWFRKG 324 (351)
Q Consensus 297 ~~f~~ILk~LYd~DVveEEaIl~W~~~~ 324 (351)
...-..++++| +.|+.+.+|-...
T Consensus 179 ~~Ve~YIKAyY----l~e~e~~~W~~~h 202 (234)
T PF10474_consen 179 EYVENYIKAYY----LPEEELEEWIRTH 202 (234)
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHhC
Confidence 34556688888 7889999999876
No 36
>PF15595 Imm31: Immunity protein 31
Probab=22.99 E-value=3.2e+02 Score=22.79 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCchhhHHHHHH-HhhcCCCCHHHHHHHhh-cCCccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecCCccch
Q 018755 24 PLDPAAFSDAVVQ-IYLDNAGDLELIAKCIE-SSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQRE 101 (351)
Q Consensus 24 ~~dp~~frd~~~~-~~~~~~~dle~~~k~l~-g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~~~~~~ 101 (351)
.++|..|-..+=. |++.+|.|.++++++.. -...+ |.+ .+--|-+..=||+. +.+.+
T Consensus 20 ~~~~~~~~~~~ee~g~egnGY~W~~l~~~~l~~~~p~-------l~~------------~i~fDpEagmF~ay--s~~~e 78 (107)
T PF15595_consen 20 DYKPEEFDERFEEIGFEGNGYDWEALARVYLRENAPE-------LLE------------KIDFDPEAGMFCAY--SEDKE 78 (107)
T ss_pred CCcceeHHHHHHhcCCCCCCccHHHHHHHHHHHhChh-------HHH------------hcCcCCCCCEEEEe--cCCHH
Confidence 4567777777777 78878889999998872 22211 222 22233345578887 66888
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHh
Q 018755 102 AILPSVIYIQKILRRRPFLIKNL 124 (351)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl~k~~ 124 (351)
+++.+.++|.++.--...|.+.+
T Consensus 79 al~~l~~~i~~~~ed~~~i~~~i 101 (107)
T PF15595_consen 79 ALKKLAEIIKEACEDEELIYDLI 101 (107)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH
Confidence 99999999999888777766665
No 37
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.16 E-value=4.1e+02 Score=21.23 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 018755 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTW 264 (351)
Q Consensus 185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~ 264 (351)
+..++..|....+.+.+...+..+++. ...+++...++...++. + . +.-+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~--------------~~~~~vv~~~i~~~le~---~-~----------~~~~~~ 56 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLP--------------EQHHEVVKVLLTCALEE---K-R----------TYREMY 56 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCC--------------cchHHHHHHHHHHHHcC---C-c----------cHHHHH
Confidence 346778888888999999999998875 23455555555554433 1 0 122567
Q ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHhh
Q 018755 265 AQLLNTFCTN-AKLELELMYKVQMQCY 290 (351)
Q Consensus 265 ~~LL~~f~~~-~~~Q~~lL~alQ~~c~ 290 (351)
+.|+.++++. .-.+-++..+++.+..
T Consensus 57 ~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 57 SVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 7788888843 3455555566655544
No 38
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.02 E-value=47 Score=25.99 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeecCCccchhhhhHHH
Q 018755 81 TKPDEGERHSYSIIDCEPQREAILPSVI 108 (351)
Q Consensus 81 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 108 (351)
|++.+++..-|||+.|| +.|+|+...+
T Consensus 39 s~v~~d~~k~~Cly~Ap-~~eaV~~~~~ 65 (77)
T PF14026_consen 39 SYVSEDDGKIFCLYEAP-DEEAVREHAR 65 (77)
T ss_pred EEEecCCCeEEEEEECC-CHHHHHHHHH
Confidence 45555555689999999 4577776543
No 39
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=21.88 E-value=66 Score=20.64 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=8.4
Q ss_pred hHHHHHHHhh
Q 018755 336 ALEPFVKWLE 345 (351)
Q Consensus 336 ~~~pFVeWLe 345 (351)
.++.||+||-
T Consensus 18 aak~fl~~L~ 27 (28)
T PF00123_consen 18 AAKKFLQWLM 27 (28)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 4888999995
No 40
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=21.23 E-value=2.4e+02 Score=20.60 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHHhhhh-hHHHHhHHHHHHHHHHhhcc-ChhhhHHHHHHHHHHHH
Q 018755 109 YIQKILRRRP-FLIKNLENVTRRFMQSLELF-EENERKKLAIFTALAFS 155 (351)
Q Consensus 109 ~~~kl~rr~k-yl~k~~e~~~~~~l~~~~~f-~~~~r~klA~~~al~~~ 155 (351)
|+++-.++.+ -....|+..++.++..+-.. +++.++|+..++.+|-.
T Consensus 11 I~q~sk~k~~~~f~~~F~~~l~~~~~~~~~~~~~~~~~kv~rll~iW~~ 59 (64)
T PF04818_consen 11 ILQNSKRKNPDEFAPAFSPVLPDAFAHAYKNVDPEVRKKVQRLLNIWEE 59 (64)
T ss_dssp HHHHHHHHTTHCHHHHHHCCHHHHHHHHCCCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5555555444 45588999898888887655 88899999999999876
No 41
>PF14143 YrhC: YrhC-like protein
Probab=20.25 E-value=51 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=16.4
Q ss_pred ccchhhhhhhHHh---hhhcCCCCCCCC
Q 018755 57 LNFSRYGDTFFEV---VFTGGRTQPGTT 81 (351)
Q Consensus 57 ldy~ry~~~lf~i---~~~Gg~l~pgg~ 81 (351)
-||+|||=+|+-+ |+.|=++ |+|.
T Consensus 8 ~DyKrf~~vLLAvs~FlYiG~vi-P~~~ 34 (72)
T PF14143_consen 8 EDYKRFAFVLLAVSTFLYIGTVI-PIGA 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-Cccc
Confidence 5999999999875 4455444 4333
Done!