Query 018755
Match_columns 351
No_of_seqs 196 out of 563
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jui_A Translation initiation 100.0 4.1E-33 1.4E-37 251.0 15.4 155 185-351 19-178 (182)
2 1paq_A Translation initiation 100.0 9.3E-33 3.2E-37 249.9 13.2 155 185-351 27-184 (189)
3 3l6a_A Eukaryotic translation 100.0 3.8E-31 1.3E-35 261.0 21.7 198 140-347 104-364 (364)
4 3d3m_A Eukaryotic translation 99.9 5.9E-26 2E-30 201.6 17.3 148 188-347 8-168 (168)
5 1ug3_A EIF4GI, eukaryotic prot 99.9 1.8E-25 6.3E-30 217.9 14.3 263 28-325 8-336 (339)
6 2ful_A EIF-5, eukaryotic trans 99.9 3E-25 1E-29 199.0 6.7 109 230-351 51-164 (177)
7 2iu1_A EIF5, eukaryotic transl 99.9 5.7E-22 1.9E-26 181.8 9.6 96 256-351 57-158 (208)
8 1h2v_C 80 kDa nuclear CAP bind 97.3 0.087 3E-06 56.4 26.3 253 28-323 293-606 (771)
9 2zu6_B Programmed cell death p 82.1 34 0.0012 32.2 18.0 223 42-318 16-283 (307)
10 3c5t_B Exendin-4, exenatide; l 56.8 5.2 0.00018 25.5 1.6 13 335-347 9-21 (31)
11 3eiq_C Programmed cell death p 55.2 1.5E+02 0.0052 28.5 15.7 239 24-317 47-333 (358)
12 2rg8_A Programmed cell death p 45.1 1.4E+02 0.0049 25.3 11.6 123 184-330 12-137 (165)
13 2bwb_A Ubiquitin-like protein 40.6 17 0.0006 24.6 2.5 25 28-52 17-43 (46)
14 2g49_C Glucagon preproprotein; 35.8 17 0.00057 22.8 1.5 11 336-346 18-28 (29)
15 1uw4_B UPF2, regulator of nons 34.0 1.9E+02 0.0064 26.5 9.1 114 183-320 6-125 (248)
16 3clj_A Protein NRD1; CTD-inter 33.5 1.1E+02 0.0037 26.2 6.9 49 120-172 94-143 (157)
17 1jrj_A Exendin-4; Trp-CAGE, GL 32.3 21 0.00071 23.8 1.6 13 335-347 17-29 (39)
18 2l63_A GLP-2, glucagon-like pe 31.8 22 0.00074 22.9 1.6 13 335-347 17-29 (33)
19 2jy5_A Ubiquilin-1; UBA, alter 31.7 28 0.00095 24.1 2.4 27 27-53 21-49 (52)
20 2knz_A Ubiquilin-4; cytoplasm, 30.4 30 0.001 24.0 2.4 25 28-52 21-47 (53)
21 3iol_B Glucagon; receptor-liga 28.8 25 0.00087 22.1 1.6 12 335-346 17-28 (31)
22 1vej_A Riken cDNA 4931431F19; 28.4 41 0.0014 25.3 2.9 26 27-52 38-65 (74)
23 2b4n_A Gastric inhibitory poly 27.8 27 0.00093 23.6 1.6 14 335-348 17-30 (42)
24 1t5q_A Gastric inhibitory poly 27.3 32 0.0011 21.6 1.8 11 336-346 18-28 (30)
25 3d9j_A RNA-binding protein 16; 26.9 1.6E+02 0.0056 24.3 6.9 65 104-171 60-132 (145)
26 1wr1_B Ubiquitin-like protein 25.7 40 0.0014 24.1 2.4 25 28-52 27-53 (58)
27 2ion_A PDCD4, programmed cell 25.5 2.9E+02 0.01 22.9 13.4 109 184-319 11-127 (152)
28 2hx6_A Ribonuclease, GP61.9; a 25.2 50 0.0017 27.9 3.2 24 113-137 8-31 (153)
29 2rg8_A Programmed cell death p 23.4 2.2E+02 0.0076 24.0 7.2 122 25-173 4-130 (165)
30 2dah_A Ubiquilin-3; UBA domain 20.3 60 0.002 22.7 2.4 26 27-52 18-45 (54)
No 1
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=100.00 E-value=4.1e-33 Score=250.98 Aligned_cols=155 Identities=21% Similarity=0.371 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHh--hcc-cchhhHHHHHHHH
Q 018755 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQW--SGK-NQQQNANAALRQV 261 (351)
Q Consensus 185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~--~~~-~~~~~~e~~~k~l 261 (351)
+.++.+++.+++++|++++|+|++||+ +|.++++|+++||.|+|+++.+ .+. ......+++.+.|
T Consensus 19 ~~sl~ra~~e~~~~d~~~LEinslr~a------------~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i 86 (182)
T 3jui_A 19 LGTLQRGKEENISCDNLVLEINSLKYA------------YNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLL 86 (182)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH------------hCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHH
Confidence 348899999999999999999999999 9999999999999999999753 321 1233455788999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCch-hhH-HHHHhHHH
Q 018755 262 KTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-GRQ-TFVKALEP 339 (351)
Q Consensus 262 ~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~-gk~-~~rk~~~p 339 (351)
++|+|+|.+|+++.+.|+++|+++|.+|++++.+++.|+.||+.|||.|||+||+|++||+++++.. |++ .+|++++|
T Consensus 87 ~~~~~ll~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~ 166 (182)
T 3jui_A 87 KAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQR 166 (182)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987653 543 68899999
Q ss_pred HHHHhhhcccCC
Q 018755 340 FVKWLEEAEEEE 351 (351)
Q Consensus 340 FVeWLeEAEEEs 351 (351)
||+||+||||||
T Consensus 167 Fi~WL~eAEEEs 178 (182)
T 3jui_A 167 FIQWLKEAEEES 178 (182)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHhccCccc
Confidence 999999999885
No 2
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=100.00 E-value=9.3e-33 Score=249.94 Aligned_cols=155 Identities=19% Similarity=0.290 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHH-HhhcccchhhHHHHHHHHHH
Q 018755 185 ITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAV-QWSGKNQQQNANAALRQVKT 263 (351)
Q Consensus 185 ~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v-~~~~~~~~~~~e~~~k~l~k 263 (351)
..++.+.+.+++++|++++++|+++++ +|.+.++|++++|.|+|+.+ .|+.++.....+.+.+.+++
T Consensus 27 ~~sL~r~~~e~~~~d~iilEin~lr~a------------~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~ 94 (189)
T 1paq_A 27 IATVERAMENNHDLDTALLELNTLRMS------------MNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQ 94 (189)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 348888999999999999999999999 99999999999999999998 57655433355678899999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhhHHHHHhHHHHH
Q 018755 264 WAQLLNTFCTNAKLELELMYKVQMQCY--EDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFV 341 (351)
Q Consensus 264 ~~~LL~~f~~~~~~Q~~lL~alQ~~c~--~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk~~~rk~~~pFV 341 (351)
|+|+|.+|+++.+.|+++|+++|.||+ +++++++.|++||+.|||.|||+||+|++||++++......+++++++|||
T Consensus 95 ~~~ll~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~~~v~~~~~~Fi 174 (189)
T 1paq_A 95 WGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWV 174 (189)
T ss_dssp HGGGGGGTCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 789999999999999999999999999999998765432248899999999
Q ss_pred HHhhhcccCC
Q 018755 342 KWLEEAEEEE 351 (351)
Q Consensus 342 eWLeEAEEEs 351 (351)
+||+||||||
T Consensus 175 ~WL~eAEeEs 184 (189)
T 1paq_A 175 EWLQNADEES 184 (189)
T ss_dssp HHHHHTC---
T ss_pred HHHhccCccc
Confidence 9999999875
No 3
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.8e-31 Score=261.05 Aligned_cols=198 Identities=16% Similarity=0.309 Sum_probs=168.1
Q ss_pred hhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccccCcchHHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccC
Q 018755 140 ENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFP 219 (351)
Q Consensus 140 ~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv~dg~al~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP 219 (351)
|.--..||.++|+++. +|.+|++.+... +++|.+.+|++.+++.+.++.|.+.+...++++|++ |++|||
T Consensus 104 P~a~~~la~f~ar~i~---~~~l~~~~l~~~-----l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlP 173 (364)
T 3l6a_A 104 PLVKSYLAQFAARAII---SELVSISELAQP-----LESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN--MQKMLP 173 (364)
T ss_dssp TTHHHHHHHHHHHHHH---TTSSCHHHHHHH-----HGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSC
T ss_pred ccHHHHHHHHHHHHHH---cCCCCHHHHHHH-----hcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCC
Confidence 4457899999999999 999999998854 456899999999999999999999999999999998 999999
Q ss_pred CCCCccccHHhHHH--------------------------------------------------HHHHHHHHHHH--hhc
Q 018755 220 SSKRSAEGFSEHFT--------------------------------------------------ILWDILMDAVQ--WSG 247 (351)
Q Consensus 220 ~~kr~n~~~~evf~--------------------------------------------------~i~~alm~~v~--~~~ 247 (351)
+++|+..++.++++ ++|+++|++|. |+.
T Consensus 174 e~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~~~~~~~~ 253 (364)
T 3l6a_A 174 EIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNP 253 (364)
T ss_dssp GGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999988888877 89999999883 431
Q ss_pred c---------cchhhHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhH
Q 018755 248 K---------NQQQNANAALRQVKTWAQLLNTFCTNAK-LELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 317 (351)
Q Consensus 248 ~---------~~~~~~e~~~k~l~k~~~LL~~f~~~~~-~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaI 317 (351)
. +.....+...+.|++|+|+|++|+++.. .|+++|+++|.+|++.....+.++.|++.|||.|||+||+|
T Consensus 254 ~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LYd~DileEe~i 333 (364)
T 3l6a_A 254 PSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 333 (364)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhhhHHH
Confidence 1 0011122345789999999999999874 69999999999999743334567999999999999999999
Q ss_pred hhhhhcCCCc-hhhHHHHHhHHHHHHHhhhc
Q 018755 318 LYWFRKGTNP-KGRQTFVKALEPFVKWLEEA 347 (351)
Q Consensus 318 l~W~~~~~~~-~gk~~~rk~~~pFVeWLeEA 347 (351)
++||++.++. .|+++++++++|||+||+||
T Consensus 334 l~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 334 LAWKEDITQEFPGKGKALFQVNQWLTWLETA 364 (364)
T ss_dssp HHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence 9999987554 48889999999999999997
No 4
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=201.62 Aligned_cols=148 Identities=16% Similarity=0.325 Sum_probs=118.4
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhccc--ch---------hhHHH
Q 018755 188 FFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKN--QQ---------QNANA 256 (351)
Q Consensus 188 ~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~--~~---------~~~e~ 256 (351)
+.+.+.++.+++.+...++..--. .+.+.+++++++|+|+|++|.|...+ .. ...++
T Consensus 8 L~~~l~~~~~~~~i~~~i~en~~~------------~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~ 75 (168)
T 3d3m_A 8 LLKQIKLDPSPQTIYKWIKDNISP------------KLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQ 75 (168)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHSCG------------GGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcCCc------------ccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHH
Confidence 334444445566666665533222 23478899999999999999873221 11 12257
Q ss_pred HHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCC-chhhHHHH
Q 018755 257 ALRQVKTWAQLLNTFCTN-AKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN-PKGRQTFV 334 (351)
Q Consensus 257 ~~k~l~k~~~LL~~f~~~-~~~Q~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~-~~gk~~~r 334 (351)
+.+.+++|+|+|.+|+++ .++|+++|+++|.+|++++.+++.|+.|++.|||.|||+||+|++||+++++ .+|+++++
T Consensus 76 ~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~ 155 (168)
T 3d3m_A 76 EKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKAL 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHH
Confidence 788999999999999986 8999999999999999988889999999999999999999999999998764 35788999
Q ss_pred HhHHHHHHHhhhc
Q 018755 335 KALEPFVKWLEEA 347 (351)
Q Consensus 335 k~~~pFVeWLeEA 347 (351)
++++|||+||+||
T Consensus 156 ~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 156 FQVNQWLTWLETA 168 (168)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999997
No 5
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.93 E-value=1.8e-25 Score=217.94 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=190.9
Q ss_pred hhhHHHHHHHhhc--CCCCHHHHHHHhh-cCCccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecCCccchhhh
Q 018755 28 AAFSDAVVQIYLD--NAGDLELIAKCIE-SSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAIL 104 (351)
Q Consensus 28 ~~frd~~~~~~~~--~~~dle~~~k~l~-g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~~~~~~~~~ 104 (351)
+.+...+-..+.+ ..||++.+...+. =+...| +.+....++... .+ ++ + ..-.
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~---------le---~~-------~---~~re 63 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVEST---------LE---RS-------A---IARE 63 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHH---------TT---TC-------H---HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHH---------hC---CC-------H---HHHH
Confidence 4455555555555 3479999888883 222222 344433333211 11 11 1 1233
Q ss_pred hHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHHhhhcCCCCc-ccchhhhhhccccCcc
Q 018755 105 PSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPE-TVFQPLLKDNLVGKGL 180 (351)
Q Consensus 105 ~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f---~~~~r~klA~~~al~~~~~~~g~~~~-~~l~~l~~d~lv~dg~ 180 (351)
.-..++..|....-.=...++.-..+++..+.-. -|..+.+||.++|++++ +|.+|+ +++.++. ++++++|.
T Consensus 64 ~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~---~g~l~~~~l~~~~~-~~l~~~g~ 139 (339)
T 1ug3_A 64 HMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQ---EGGVPMGELFREIT-KPLRPLGK 139 (339)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGS---TTSCCHHHHHHHHT-TTHHHHTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHH---CCCCCHHHHHHHHH-Hhhhccch
Confidence 4455666666553322334444455555555554 47799999999999999 999999 6666555 78999999
Q ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccH--------------------------------
Q 018755 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGF-------------------------------- 228 (351)
Q Consensus 181 al~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~-------------------------------- 228 (351)
+.+|++.+++.+..++|.+.+...+++++++ |++|||+++|....+
T Consensus 140 ~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~--l~~f~P~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~ 217 (339)
T 1ug3_A 140 AASLLLEILGLLCKSMGPKKVGTLWREAGLS--WKEFLPEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEK 217 (339)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTCC--GGGTSCTTCCHHHHHHHTTCGGGC----------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHcCCC--HHHhCCCchhHHHHHHHCCceeecCCcccccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999998733111
Q ss_pred --------------------------HhHHHHHHHHHHHH-HHhhcccchhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Q 018755 229 --------------------------SEHFTILWDILMDA-VQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELEL 281 (351)
Q Consensus 229 --------------------------~evf~~i~~alm~~-v~~~~~~~~~~~e~~~k~l~k~~~LL~~f~~~~~~Q~~l 281 (351)
+++++++|+|+|++ +.|+.. .. ...+.+++|+|+|++|+++.+.|+++
T Consensus 218 ~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~---~~--~~~~~l~~~~pll~~~~~~~~~ql~~ 292 (339)
T 1ug3_A 218 LLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETP---LR--VDVAVLKARAKLLQKYLCDEQKELQA 292 (339)
T ss_dssp HHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSS---CE--ECHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCc---hH--HHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 11222889999987 455322 11 22478999999999999999999999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCC
Q 018755 282 MYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGT 325 (351)
Q Consensus 282 L~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~ 325 (351)
|+++|.+|+++...+++|..+++.|||.|||+||+|++||++..
T Consensus 293 L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d 336 (339)
T 1ug3_A 293 LYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKD 336 (339)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC---
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcCC
Confidence 99999999998778899999999999999999999999998743
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-25 Score=198.99 Aligned_cols=109 Identities=22% Similarity=0.426 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHhh
Q 018755 230 EHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCY-EDAKLMKLFPEIVRSLYD 308 (351)
Q Consensus 230 evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~-~~~~~~~~f~~ILk~LYd 308 (351)
++..++|.++|+. ++.++|++|+|+|.+|+++.++|+++|+++|.+|. +++.+++.|++||+.|||
T Consensus 51 ~~~~vl~~~lf~~-------------~i~~~l~k~~~lL~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd 117 (177)
T 2ful_A 51 KIGCVLAQCLFDE-------------DIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYN 117 (177)
T ss_dssp THHHHHHHHSCST-------------THHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhch-------------hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhc
Confidence 5666888988842 45678999999999999999999999999999994 789999999999999999
Q ss_pred ccccchhhHhhhhhcCCC----chhhHHHHHhHHHHHHHhhhcccCC
Q 018755 309 QDVLAEDTILYWFRKGTN----PKGRQTFVKALEPFVKWLEEAEEEE 351 (351)
Q Consensus 309 ~DVveEEaIl~W~~~~~~----~~gk~~~rk~~~pFVeWLeEAEEEs 351 (351)
.|||+||+|++||+++++ .+|+++++++++|||+||+||||||
T Consensus 118 ~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEs 164 (177)
T 2ful_A 118 NDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDD 164 (177)
T ss_dssp TTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC---
T ss_pred cchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999998763 2466789999999999999999874
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=181.81 Aligned_cols=96 Identities=31% Similarity=0.571 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCch---h-
Q 018755 256 AALRQVKTWAQLLNTFCT-NAKLELELMYKVQMQCYE-DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK---G- 329 (351)
Q Consensus 256 ~~~k~l~k~~~LL~~f~~-~~~~Q~~lL~alQ~~c~~-~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~---g- 329 (351)
.+.+.|++|+|+|.+|++ +.+.|+++|+++|.+|.. ++.+++.|+.||+.|||.|||+||+|++||+++++++ .
T Consensus 57 ~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~ 136 (208)
T 2iu1_A 57 KIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKEL 136 (208)
T ss_dssp THHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHH
Confidence 456789999999999998 668999999999999754 6789999999999999999999999999999877542 1
Q ss_pred hHHHHHhHHHHHHHhhhcccCC
Q 018755 330 RQTFVKALEPFVKWLEEAEEEE 351 (351)
Q Consensus 330 k~~~rk~~~pFVeWLeEAEEEs 351 (351)
.+.++++++|||+||+||||||
T Consensus 137 ~k~v~~~~~pFI~WL~EAEEEs 158 (208)
T 2iu1_A 137 AKEIRVKAEPFIKWLKEAEEES 158 (208)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 2367999999999999999874
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=97.31 E-value=0.087 Score=56.42 Aligned_cols=253 Identities=9% Similarity=0.083 Sum_probs=165.8
Q ss_pred hhhHHHHHHHhhcCCCCHHHHHHHhhcC--CccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecC----Cccch
Q 018755 28 AAFSDAVVQIYLDNAGDLELIAKCIESS--DLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDC----EPQRE 101 (351)
Q Consensus 28 ~~frd~~~~~~~~~~~dle~~~k~l~g~--~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~----~~~~~ 101 (351)
..+||.++..++--.+|-+..|+.|-+= +-.+ ++.+.+.| |||.. |.+.-
T Consensus 293 ~l~re~ildIi~~~~~nrkecA~~Ll~l~~~~~~-~~e~~iVE-----------------------~i~~el~~LP~p~~ 348 (771)
T 1h2v_C 293 FVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKI-PLNYHIVE-----------------------VIFAELFQLPAPPH 348 (771)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCC-CHHHHHHH-----------------------HHHHHHTCSSCCSS
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcc-cHHHHHHH-----------------------HHHHHHhcCCCCch
Confidence 3679999999998878889999999331 0000 12222222 33332 33333
Q ss_pred hhhhHHHHHHHHHhhhh-hHHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCC--CCcccch----------
Q 018755 102 AILPSVIYIQKILRRRP-FLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGL--PPETVFQ---------- 168 (351)
Q Consensus 102 ~~~~~~~~~~kl~rr~k-yl~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~--~~~~~l~---------- 168 (351)
...-|-.|+..|-+--| =+...|+..+..+-.-|+..+.+-++++|-..|..+| |.. .|=+...
T Consensus 349 ~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLS---NF~f~W~W~eW~~~~e~~~~~p 425 (771)
T 1h2v_C 349 IDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLS---NFQFRWSWEDWSDCLSQDPESP 425 (771)
T ss_dssp CHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHT---TTTTCCCGGGGGGGTTSCTTSH
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh---cCCcCccHHHhHHhhcCCccCc
Confidence 45688889999999884 5667888889999999999999999999999999999 772 2222111
Q ss_pred ------------------------------hhhhh------ccccCc----chHHHHHHHHHHHHhhCCHHHHHHHHHhc
Q 018755 169 ------------------------------PLLKD------NLVGKG----LVLSFITDFFKEYLVDNSLDDLIAILKRG 208 (351)
Q Consensus 169 ------------------------------~l~~d------~lv~dg----~al~f~~~~~~~~l~e~~~d~l~~eL~~l 208 (351)
.++.. .+..++ ........++..+....+.+.+...|++.
T Consensus 426 ~r~Fik~ll~k~~RLSy~~rIk~~lP~~~~~llp~~p~p~f~y~~e~~~~~p~~~~a~~l~~~ir~k~~~eei~~~l~~i 505 (771)
T 1h2v_C 426 KPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDV 505 (771)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHTTSCGGGGGGSCCCCCCCCTTSTTSCTTSTTHHHHHHHHHHHHTTCCHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCcHHHHhhCCCCCCCCceeCCccccCCcchHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 11000 011122 22334566666666666777777776663
Q ss_pred CchhhhhhccCCCCCc-cccH-HhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 018755 209 KMEDNLLDFFPSSKRS-AEGF-SEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQ 286 (351)
Q Consensus 209 km~~~l~~ffP~~kr~-n~~~-~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~~~LL~~f~~~~~~Q~~lL~alQ 286 (351)
.-. .. .+.-. ...+ .....+++++++... ..... .....+++|+++|..++.++..|..+|.++-
T Consensus 506 ~~~--~~----~~~~~~~~~~~~~~i~v~~q~ll~~G------skS~S-H~~~~lery~~~lk~l~~~~~~q~~il~~v~ 572 (771)
T 1h2v_C 506 PNP--NQ----DDDDDEGFSFNPLKIEVFVQTLLHLA------AKSFS-HSFSALAKFHEVFKTLAESDEGKLHVLRVMF 572 (771)
T ss_dssp C-------------------CCHHHHHHHHHHHHHHS------TTCHH-HHHHHHHHTHHHHHHHTSSHHHHHHHHHHHH
T ss_pred hhc--cc----ccccccccccchHHHHHHHHHHHHhc------cchHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 322 00 00000 0000 024446677766552 11222 6678899999999999999899999999999
Q ss_pred HHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhc
Q 018755 287 MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRK 323 (351)
Q Consensus 287 ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~ 323 (351)
.|..++|... ..++..|-+.+||+-.+|..|-=.
T Consensus 573 ~~W~~~~q~~---~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 573 EVWRNHPQMI---AVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HHHTTCHHHH---HHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHhcCCceE---ehHHHHHHhcCCCCHHHHHHHHcC
Confidence 9998888754 667888889999999999999844
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=82.08 E-value=34 Score=32.24 Aligned_cols=223 Identities=13% Similarity=0.203 Sum_probs=120.9
Q ss_pred CCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecCCccchhhhhHHHHHHHHHhhhhhHH
Q 018755 42 AGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLI 121 (351)
Q Consensus 42 ~~dle~~~k~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~kl~rr~kyl~ 121 (351)
.||.+.++..|.. |.-..|...|-..+|.=++ | +.+ ..+| .-..++..|- ..-.=.
T Consensus 16 ~~d~~Ea~~~l~e--l~~p~~~~~~v~~~i~~al--------d---r~~-------~erE---~~s~LLs~L~-~~~ls~ 71 (307)
T 2zu6_B 16 HGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL--------E---GKA-------SHRE---MTSKLLSDLC-GTVMST 71 (307)
T ss_dssp HCCHHHHHHHHHT--TCCGGGGGGHHHHHHHHHH--------T---SCH-------HHHH---HHHHHHHHHH-HHTBCH
T ss_pred CCCHHHHHHHHHH--hCCcchHHHHHHHHHHHHh--------C---CCH-------HHHH---HHHHHHHHHH-hCCCCH
Confidence 3699999988842 4444566666666654222 1 111 1222 1122333332 111112
Q ss_pred HHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccc----------------------
Q 018755 122 KNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV---------------------- 176 (351)
Q Consensus 122 k~~e~~~~~~l~~~~~f---~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv---------------------- 176 (351)
..++.-+.++|.++.-. .|.--+.||.++|+++. +|.+|++.+.........
T Consensus 72 ~~i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~---d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~ 148 (307)
T 2zu6_B 72 TDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKR 148 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhH
Confidence 22333345555555554 46677999999999999 999999998754332110
Q ss_pred -------cCc-----chHHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHH
Q 018755 177 -------GKG-----LVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQ 244 (351)
Q Consensus 177 -------~dg-----~al~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~ 244 (351)
..| ....-+.++++.|....+.+.+..-++.+++. ...++ +|-.++...++
T Consensus 149 ~~~~WG~~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p--------------~f~~e---~V~~ai~~alE 211 (307)
T 2zu6_B 149 KDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP--------------HFHHE---LVYEAIIMVLE 211 (307)
T ss_dssp CCCSSCCCSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCG--------------GGHHH---HHHHHHHHHHT
T ss_pred HhhhcCCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC--------------cchHH---HHHHHHHHHHc
Confidence 011 11123456777888888888888888888775 11233 33334444443
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHhc-----ChHHH---HHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhh
Q 018755 245 WSGKNQQQNANAALRQVKTWAQLLNTFCT-----NAKLE---LELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDT 316 (351)
Q Consensus 245 ~~~~~~~~~~e~~~k~l~k~~~LL~~f~~-----~~~~Q---~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEa 316 (351)
-+ .+...+.+. .||...+. ...-. ..++..+.+...+-|..-..+..++......++++..-
T Consensus 212 ~~---~~~~re~~~-------~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~ 281 (307)
T 2zu6_B 212 ST---GESTFKMIL-------DLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQL 281 (307)
T ss_dssp CC---SSHHHHHHH-------HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHH
T ss_pred cC---ChHHHHHHH-------HHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHH
Confidence 11 111111222 23333332 22111 13444445555556788888999999999999999754
Q ss_pred Hh
Q 018755 317 IL 318 (351)
Q Consensus 317 Il 318 (351)
+-
T Consensus 282 ~~ 283 (307)
T 2zu6_B 282 RD 283 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=56.76 E-value=5.2 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.5
Q ss_pred HhHHHHHHHhhhc
Q 018755 335 KALEPFVKWLEEA 347 (351)
Q Consensus 335 k~~~pFVeWLeEA 347 (351)
++++.||+||.+.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 4588899999864
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.16 E-value=1.5e+02 Score=28.49 Aligned_cols=239 Identities=15% Similarity=0.252 Sum_probs=118.1
Q ss_pred CCCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecCCccch
Q 018755 24 PLDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQRE 101 (351)
Q Consensus 24 ~~dp~~frd~~~~~~~~--~~~dle~~~k~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~~~~~~ 101 (351)
..++..|......++++ ..+|.+.++..|.. |+...|.-.+-..+|.=.+ | +++ .++|
T Consensus 47 ~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~e--L~~p~~~~~~v~~~I~~aL---------d--r~~-------~erE 106 (358)
T 3eiq_C 47 PLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL---------E--GKA-------SHRE 106 (358)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--TTCCGGGGGHHHHHHHHHT---------T--SCH-------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--hCCchhHHHHHHHHHHHHh---------c--CCh-------HHHH
Confidence 44556777777766666 34688888888832 3333344445555544322 1 111 0111
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhhccc--
Q 018755 102 AILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV-- 176 (351)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f---~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d~lv-- 176 (351)
- -.+++..|. ..-.=...++.-..++|.++.-. .|.--..||.++|+++. +|.+|++.+.... .++-
T Consensus 107 ~---~s~LLs~L~-~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~---d~~l~~~~l~~~~-~~~~~~ 178 (358)
T 3eiq_C 107 M---TSKLLSDLC-GTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYK-GTVDCV 178 (358)
T ss_dssp H---HHHHHHTTT-TTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHH---TTCSCSSTTGGGC----CCH
T ss_pred H---HHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHH---hCCCCHHHHHHHh-hcccch
Confidence 0 011111111 10000111122233344444333 45566899999999999 9999999886531 1110
Q ss_pred ----------------------------cCcc-h----HHHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCC
Q 018755 177 ----------------------------GKGL-V----LSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKR 223 (351)
Q Consensus 177 ----------------------------~dg~-a----l~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr 223 (351)
..|. . ..-+..+++.|....+.+.+..-++.+++.
T Consensus 179 ~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p------------ 246 (358)
T 3eiq_C 179 QARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP------------ 246 (358)
T ss_dssp HHHHHHHHHHHHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCT------------
T ss_pred HHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCC------------
Confidence 0111 1 112355666777777777777777777664
Q ss_pred ccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHhcCh-----HHH---HHHHHHHHHHhhhchHH
Q 018755 224 SAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNA-----KLE---LELMYKVQMQCYEDAKL 295 (351)
Q Consensus 224 ~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k~~~LL~~f~~~~-----~~Q---~~lL~alQ~~c~~~~~~ 295 (351)
. ..+++. -.++...++-+. +... .....||...+... ... ..++..+.....+-|+.
T Consensus 247 ~--fhhe~V---~~av~~aLE~~~---~~~r-------e~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A 311 (358)
T 3eiq_C 247 H--FHHELV---YEAIVMVLESTG---ESAF-------KMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHS 311 (358)
T ss_dssp T--CHHHHH---HHHHHHHHHCCS---SHHH-------HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred c--chHHHH---HHHHHHHHccCc---hHHH-------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccH
Confidence 1 122322 333333332111 1111 12223444444321 111 12334444445555777
Q ss_pred HHHHHHHHHHHhhccccchhhH
Q 018755 296 MKLFPEIVRSLYDQDVLAEDTI 317 (351)
Q Consensus 296 ~~~f~~ILk~LYd~DVveEEaI 317 (351)
-..+..++......++|+-.-|
T Consensus 312 ~~~la~~varai~~g~l~~~f~ 333 (358)
T 3eiq_C 312 YSVLERFVEECFQAGIISKQLR 333 (358)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 7888999999999999998443
No 12
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=45.10 E-value=1.4e+02 Score=25.26 Aligned_cols=123 Identities=12% Similarity=0.175 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 018755 184 FITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKT 263 (351)
Q Consensus 184 f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k 263 (351)
-+.++++.|....+.+.++..++.++.. .....+.+.++...|++ + +...+.+.+.+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p--------------~~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~ 70 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLG--------------EMKSGVPVLAVSLALEG-----K--ASHREMTSKLLSD 70 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCS--------------GGGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc--------------ccHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHH
Confidence 3567899999999999999999998765 12223333333333322 1 1111122222222
Q ss_pred HHHHHHHHhcChHHH---HHHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhhhhhcCCCchhh
Q 018755 264 WAQLLNTFCTNAKLE---LELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGR 330 (351)
Q Consensus 264 ~~~LL~~f~~~~~~Q---~~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~W~~~~~~~~gk 330 (351)
|..+.++...-+ ..+|..+.+...+-|..-..+..++-...-.|++.-.-+-.=..+...+.|+
T Consensus 71 ---L~~~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~ 137 (165)
T 2rg8_A 71 ---LCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR 137 (165)
T ss_dssp ---HBTTTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHH
T ss_pred ---HHHCCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHH
Confidence 111222222222 2344444555556677777888889999999999987776665554444453
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=40.63 E-value=17 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.6
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 018755 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~k~l 52 (351)
-+| |++.++.|..+.||.+....+|
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 356 6788999999999999888877
No 14
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=35.80 E-value=17 Score=22.76 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.2
Q ss_pred hHHHHHHHhhh
Q 018755 336 ALEPFVKWLEE 346 (351)
Q Consensus 336 ~~~pFVeWLeE 346 (351)
+++.||+||.+
T Consensus 18 aak~fv~wL~~ 28 (29)
T 2g49_C 18 RAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHhc
Confidence 58899999975
No 15
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=33.98 E-value=1.9e+02 Score=26.52 Aligned_cols=114 Identities=8% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchh-hHHHHHHHH
Q 018755 183 SFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQ-NANAALRQV 261 (351)
Q Consensus 183 ~f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~-~~e~~~k~l 261 (351)
.|+--++..-+...+.+.+...|+++.-+| .++...++.++++. |..+=+.. ....++..+
T Consensus 6 ~fir~Li~~~L~~~~~~~vlk~lrKl~W~D----------------~e~~~~l~k~l~~~--~~~ky~nI~~lA~ll~~L 67 (248)
T 1uw4_B 6 EYVRKLLYKDLSKVTTEKVLRQMRKLPWQD----------------QEVKDYVICCMINI--WNVKYNSIHCVANLLAGL 67 (248)
T ss_dssp HHHHHHHHTTCSTTSHHHHHHHHHTSCTTS----------------HHHHHHHHHHHHCG--GGSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHcCCCCc----------------HHHHHHHHHHhcch--hhcccchHHHHHHHHHHH
Confidence 355555555556778999999999999872 24556666766644 54442222 111334444
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHhhccccchhhHhhh
Q 018755 262 KTWAQLLNTFCTNAKLELELMYKVQMQCYED-----AKLMKLFPEIVRSLYDQDVLAEDTILYW 320 (351)
Q Consensus 262 ~k~~~LL~~f~~~~~~Q~~lL~alQ~~c~~~-----~~~~~~f~~ILk~LYd~DVveEEaIl~W 320 (351)
.+|.|=+.--+-+ .+|..|..-+..| ..-+ .-.+.|-.||+..+|++..|..=
T Consensus 68 ~~~~~~~~i~vVD-----~vlE~Ir~gLE~n~~~~nQrRi-a~vkyLgELYny~lv~s~vIf~~ 125 (248)
T 1uw4_B 68 VLYQEDVGIHVVD-----GVLEDIRLGMEVNQPKFNQRRI-SSAKFLGELYNYRMVESAVIFRT 125 (248)
T ss_dssp TTTCHHHHHHHHH-----HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HhhChHHhhhhHH-----HHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHH
Confidence 4454433222211 2333333233222 2222 34677999999999999999654
No 16
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=33.50 E-value=1.1e+02 Score=26.19 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHhHHHHHHHHHH-hhccChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhh
Q 018755 120 LIKNLENVTRRFMQS-LELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLK 172 (351)
Q Consensus 120 l~k~~e~~~~~~l~~-~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~ 172 (351)
+.+ +.+.++.++.- +..=++++|.|+-.++-+|=- ++.-|+.++.++..
T Consensus 94 v~~-~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k---~~~Fp~e~i~~i~~ 143 (157)
T 3clj_A 94 INT-LGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDR---SGLFQKSYLNAIRS 143 (157)
T ss_dssp HHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HTTTTTSCCTTTTS
T ss_pred HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHH
Confidence 444 56667777665 444489999999999999987 88899999987643
No 17
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=32.29 E-value=21 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.3
Q ss_pred HhHHHHHHHhhhc
Q 018755 335 KALEPFVKWLEEA 347 (351)
Q Consensus 335 k~~~pFVeWLeEA 347 (351)
.+++.||+||.+.
T Consensus 17 ~aak~fv~wL~~~ 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3588999999864
No 18
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=31.84 E-value=22 Score=22.88 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.5
Q ss_pred HhHHHHHHHhhhc
Q 018755 335 KALEPFVKWLEEA 347 (351)
Q Consensus 335 k~~~pFVeWLeEA 347 (351)
.+++.||+||.+.
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3588999999864
No 19
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.68 E-value=28 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=22.7
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHhh
Q 018755 27 PAAF--SDAVVQIYLDNAGDLELIAKCIE 53 (351)
Q Consensus 27 p~~f--rd~~~~~~~~~~~dle~~~k~l~ 53 (351)
--+| |++.++.|..++||+|....+|-
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578 88889999999999999888883
No 20
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=30.38 E-value=30 Score=24.04 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.1
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 018755 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~k~l 52 (351)
-+| |++.+..|..++||+|....+|
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 467 8888888888888999888888
No 21
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=28.84 E-value=25 Score=22.11 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.8
Q ss_pred HhHHHHHHHhhh
Q 018755 335 KALEPFVKWLEE 346 (351)
Q Consensus 335 k~~~pFVeWLeE 346 (351)
+.++.||+||-.
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 468899999964
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.38 E-value=41 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.5
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHh
Q 018755 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 27 p~~f--rd~~~~~~~~~~~dle~~~k~l 52 (351)
.-+| |+++++.|..+.||++....+|
T Consensus 38 eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 38 ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567 7899999999999999988888
No 23
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=27.80 E-value=27 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.0
Q ss_pred HhHHHHHHHhhhcc
Q 018755 335 KALEPFVKWLEEAE 348 (351)
Q Consensus 335 k~~~pFVeWLeEAE 348 (351)
.+++.||+||.+..
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 45888999998654
No 24
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.28 E-value=32 Score=21.58 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=9.2
Q ss_pred hHHHHHHHhhh
Q 018755 336 ALEPFVKWLEE 346 (351)
Q Consensus 336 ~~~pFVeWLeE 346 (351)
.++.||+||-+
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 47889999975
No 25
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=26.94 E-value=1.6e+02 Score=24.28 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhhhhh--------HHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHHhhhcCCCCcccchhhh
Q 018755 104 LPSVIYIQKILRRRPF--------LIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (351)
Q Consensus 104 ~~~~~~~~kl~rr~ky--------l~k~~e~~~~~~l~~~~~f~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~ 171 (351)
.+..=+++-++|..+. -...|...+.+++..+-.-.+..|.|+-.+...|-- .+.-|+.++..+.
T Consensus 60 L~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~---r~vF~~~~l~~l~ 132 (145)
T 3d9j_A 60 VPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQK---NNVFKSEIIQPLL 132 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHH---TTSSCHHHHHHHH
T ss_pred eehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 4444555656655543 234466777776655444569999999999999988 7888999888654
No 26
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=25.66 E-value=40 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.9
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 018755 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~k~l 52 (351)
-+| |++.++.|..+.||++....+|
T Consensus 27 MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 27 MGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456 7788899999999999988887
No 27
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.50 E-value=2.9e+02 Score=22.94 Aligned_cols=109 Identities=12% Similarity=0.209 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhcCchhhhhhccCCCCCccccHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 018755 184 FITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTILWDILMDAVQWSGKNQQQNANAALRQVKT 263 (351)
Q Consensus 184 f~~~~~~~~l~e~~~d~l~~eL~~lkm~~~l~~ffP~~kr~n~~~~evf~~i~~alm~~v~~~~~~~~~~~e~~~k~l~k 263 (351)
=+..+++.|....+.+.+...++.+++. ...+++. -.++...++-+.. ... ..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--------------~f~~e~V---~~~i~~alE~~~~---~~r-------e~ 63 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--------------HFHHELV---YEAIVMVLESTGE---SAF-------KM 63 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--------------GGHHHHH---HHHHHHHHHCCSS---HHH-------HH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--------------cchHHHH---HHHHHHHHcCCCh---HHH-------HH
Confidence 4568899999999999999999999876 2223333 3333334331111 111 12
Q ss_pred HHHHHHHHhcC-----hHHHH---HHHHHHHHHhhhchHHHHHHHHHHHHHhhccccchhhHhh
Q 018755 264 WAQLLNTFCTN-----AKLEL---ELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILY 319 (351)
Q Consensus 264 ~~~LL~~f~~~-----~~~Q~---~lL~alQ~~c~~~~~~~~~f~~ILk~LYd~DVveEEaIl~ 319 (351)
-..||...+.+ ..-+. .++..+.+.+.+-|..-..+..++......++|+-.-+-.
T Consensus 64 ~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~ 127 (152)
T 2ion_A 64 ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 22333333322 22111 3344445555566777888999999999999999877765
No 28
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=25.15 E-value=50 Score=27.95 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHhhc
Q 018755 113 ILRRRPFLIKNLENVTRRFMQSLEL 137 (351)
Q Consensus 113 l~rr~kyl~k~~e~~~~~~l~~~~~ 137 (351)
.||||| |.+.||.+++++=..|+.
T Consensus 8 ~irRnK-LRR~fEtEFr~iN~~I~~ 31 (153)
T 2hx6_A 8 FIRRNK-LRRHFESEFRQINNEIRE 31 (153)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eeeHHH-HHHHHHHHHHHHHHHHHH
Confidence 589999 999999999888555543
No 29
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.40 E-value=2.2e+02 Score=23.98 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=71.2
Q ss_pred CCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCCCCCCCCCCCceeecCCccchh
Q 018755 25 LDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREA 102 (351)
Q Consensus 25 ~dp~~frd~~~~~~~~--~~~dle~~~k~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~v~~~~~~~~~ 102 (351)
..++.|+..+...+++ ..+|.+.+...+.- |....|.-.+-..+|.=.+ | +.+ ..+|
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~e--L~~p~~~~~~V~~~I~~al--------d---rk~-------~ere- 62 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL--------E---GKA-------SHRE- 62 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HTCSGGGGHHHHHHHHHHH--------T---SCH-------HHHH-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--hCCcccHHHHHHHHHHHHH--------c---CCH-------HHHH-
Confidence 3566777777777776 34799999988831 2223355555555553211 1 110 1111
Q ss_pred hhhHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHHhhhcCCCCcccchhhhhh
Q 018755 103 ILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKD 173 (351)
Q Consensus 103 ~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~~~~f---~~~~r~klA~~~al~~~~~~~g~~~~~~l~~l~~d 173 (351)
.-.+++..| ...-.=...+++-+..++.++.-. .|.--+.||.++|+++. +|.+|++.+......
T Consensus 63 --~~s~LL~~L-~~~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~---d~~l~~~~l~~~~~~ 130 (165)
T 2rg8_A 63 --MTSKLLSDL-CGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGT 130 (165)
T ss_dssp --HHHHHHHHH-BTTTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTHHHHTTTT
T ss_pred --HHHHHHHHH-HHCCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHH---cCCCCHHHHHHHHhc
Confidence 223445555 222222233344445555555544 35566899999999999 999999999875554
No 30
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.30 E-value=60 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=21.7
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHh
Q 018755 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (351)
Q Consensus 27 p~~f--rd~~~~~~~~~~~dle~~~k~l 52 (351)
.-+| +++.++.|..+.||++....+|
T Consensus 18 ~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 18 SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3568 5577999999999999998888
Done!