BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018756
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
+A++ + A + EL+ GD ++V + P+GW EGE GK GW P+ V+
Sbjct: 7 KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
+A++ + A + EL+ GD ++V + P+GW EGE GK GW P+ V+
Sbjct: 8 KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
++NS+ + V A F +E ELS GD + V +V GW EG G+ GWFPS
Sbjct: 2 TDNSNNQLV---VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSN 58
Query: 334 NVEK 337
V +
Sbjct: 59 YVRE 62
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
+ +A F +E ELS+ GD + V +V GW EG G+ GWFPS V +
Sbjct: 11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
F +E ELS GD + V +V GW EG G+ GWFPS V +
Sbjct: 13 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
F +E ELS GD + V +V GW EG G+ GWFPS V +
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
A A++ + AA + E+S D + ++ GW G CKG+ G FP+ VE RQ P S
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 287 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSA 333
EAI+ + A + E+S+ GD + V+R SGW+ GEC G G FP++
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTS 51
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
F +E ELS GD + V +V GW EG G+ GWFPS V +
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
L +A++ F A + EL+L GD V++ + GW G GK G FP+A VE+
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEE 61
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 288 AIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
A++PF A + E+S GD + V + V GW G +G GWFP VEK
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 281 AVYFLAEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
+ A+A + F A ELSL GD + ++ K GW GE G+ GWFPS VE
Sbjct: 3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
S+ + A A++ + AA + E+S D + ++ GW G CKG+ G FP+ VE
Sbjct: 5 SENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
Query: 338 RQ 339
RQ
Sbjct: 65 RQ 66
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
+A++ + A ELS D + + K PSGW G +GK G FP+ V K
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339
A A++ + AA + E+S D + ++ GW G CKG+ G FP+ VE RQ
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFPSANVEK 337
A A + F A +ELSL GD V + R GW +GE G+ GWFPS VE+
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 271 VIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWF 330
V P NS + AEA+ FT S+ EL+ GD + + W EG +G G F
Sbjct: 162 VSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF 221
Query: 331 PSANVEKRQRIP 342
P + V+ + P
Sbjct: 222 PLSFVKILKDFP 233
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
F A S KEL+L GD V + K W EGE G+ G FP+ VE
Sbjct: 10 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSN 345
+ A E ELSL G V+V + GW G G+ GWFPS V + P+ +
Sbjct: 26 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGD 79
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+ A E ELSL G V V + GW G G+ GWFPS V
Sbjct: 10 YVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+ A E ELSL G V+V + GW G G+ GWFPS V
Sbjct: 13 YMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 274 SENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSA 333
S SS KA A F A S KEL+L GD V + K W EGE G+ G FP+
Sbjct: 2 SSGSSGKA----ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPAN 57
Query: 334 NVE 336
VE
Sbjct: 58 YVE 60
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA-----GWFPSANVE 336
+A+ + A+ ++LSL G +++ K + SGW +GE + + GWFP+++V+
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+ A E ELSL G V V + GW G G+ GWFPS V
Sbjct: 9 YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A + L+L VG+ V V K++ SG EGEC GK G FP +V
Sbjct: 32 AYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHV 73
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii
Length = 76
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A + L+L VG+ V V K++ SG EGEC GK G FP +V
Sbjct: 22 AYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 63
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A + L+L VG+ V V K++ SG EGEC GK G FP +V
Sbjct: 19 AYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 293 TAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A + L+L VG+ V V K++ SG EGEC GK G FP +V
Sbjct: 249 NAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 291
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A A F A + KEL L GD V + K W EGE G+ G FP +E
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
AI + S E++L GD V V + S SGW + K K GW P++ +E
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
AI+ +T E ELS G + V K + GW EG G G FP VE
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
AI + S E++L GD V V + S SGW + K K GW P++ +E
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
A++ F A EL VGD + + GW EG KG+ G FP
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFP 61
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 293 TAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A + L+L VG+ V V K++ SG EGEC GK G FP +V
Sbjct: 116 NAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHV 158
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 287 EAIHPFTAA-SEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANV----EKRQ 339
EA + F + S EL L GD V + + PSGWS + K GW P+A + + R
Sbjct: 7 EAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRN 66
Query: 340 RIPV 343
+PV
Sbjct: 67 TVPV 70
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 287 EAIHPFTAA-SEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANV----EKRQ 339
EA + F + S EL L GD V + + PSGWS + K GW P+A + + R
Sbjct: 6 EAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRN 65
Query: 340 RIPV 343
+PV
Sbjct: 66 TVPV 69
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 287 EAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVE 336
EA++ F + +L L GD V ++ K+SP W +G C G+ G FP+ V+
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPE-WYKGSCNGRTGIFPANYVK 55
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 287 EAIHPFTAA-SEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSA 333
EA + F + S EL L GD + + + PSGWS G+ K GW P+A
Sbjct: 4 EAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTA 53
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 287 EAIHPFTAA-SEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANV----EKRQ 339
EA + F + S EL L GD V + + PSGWS + K GW P+A + + R
Sbjct: 6 EAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRN 65
Query: 340 RIPV 343
+PV
Sbjct: 66 TVPV 69
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 342
AEA+ FT S+ EL+ GD + + W EG +G G FP + V+ + P
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 77
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 275 ENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSAN 334
E Q+ Y +A+ F + EL GD++ V S W +G C G+ G FP
Sbjct: 152 EQVPQQPTY--VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNY 209
Query: 335 VEKRQR 340
V R
Sbjct: 210 VTPVNR 215
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
A A + F A ++ ELS GD + V+ + W + E GK G+ P +E +
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 250 ILGDVEAEMVSEKQRKESAPPVI--PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDY 307
+ D E + +SE R S ++ PSEN V A++ F A+ + LS+ G+
Sbjct: 52 VASDFEPQGLSEAARWNSKENLLAGPSENDPNLFV-----ALYDFVASGDNTLSITKGEK 106
Query: 308 VVVRKVSPSG-WSEGECKGKAGWFPS 332
+ V + +G W E + K GW PS
Sbjct: 107 LRVLGYNHNGEWCEAQTKNGQGWVPS 132
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 250 ILGDVEAEMVSEKQRKESAPPVI--PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDY 307
+ D E + +SE R S ++ PSEN V A++ F A+ + LS+ G+
Sbjct: 13 VASDFEPQGLSEAARWNSKENLLAGPSENDPNLFV-----ALYDFVASGDNTLSITKGEK 67
Query: 308 VVVRKVSPSG-WSEGECKGKAGWFPS 332
+ V + +G W E + K GW PS
Sbjct: 68 LRVLGYNHNGEWCEAQTKNGQGWVPS 93
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A++ + A +E ELS G + V W +GE G G FPS V+
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 71
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 289 IHPFTAASEKELSLGVGD--YVVVRKVSPSGWSEGECKGKAGWFP 331
+ P+T +E EL+ G+ +++ ++ +GW +GE GK G FP
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFP 56
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A+A+ + + +L GD +++R+ W +GE G +G FP+++VE
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
AEA+ FT S+ EL+ GD + + W EG +G G FP + V+
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE-----KRQRIP 342
AI + S E++L GD V V + S SGW + K K GW P++ +E P
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDP 74
Query: 343 VSNVADEAY 351
N A E Y
Sbjct: 75 EPNYAGEPY 83
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE-----KRQRIP 342
AI + S E++L GD V V + S SGW + K K GW P++ +E P
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDP 75
Query: 343 VSNVADEAY 351
N A E Y
Sbjct: 76 EPNYAGEPY 84
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 35.0 bits (79), Expect = 0.062, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
+ I P+ A ++ EL++ GD V + + GW EGE G+ G FP
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 52
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 35.0 bits (79), Expect = 0.062, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
+ I P+ A ++ EL++ GD V + + GW EGE G+ G FP
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 53
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 35.0 bits (79), Expect = 0.062, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
+ I P+ A ++ EL++ GD V + + GW EGE G+ G FP
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 57
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVV--RKVSPSGWSEGECKGKAGWFP 331
+ I P+ A ++ EL++ GD V + + GW EGE G+ G FP
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
EA+ + A ++L GD ++V W EGE KGK G FP VE
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 290 HPFTAASEKELSLGVGDYVV-VRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
+ + A + EL++ VG+ + V+K+ GW EGE G+ G FP V++ +R
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSN 345
AEA+ ++EL GD + V + W G GWFP++ V R R+
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV--RLRVNQDE 90
Query: 346 VADE 349
AD+
Sbjct: 91 PADD 94
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
+A+ F + EL GD++ V S W +G C G+ G FP V R
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 59
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340
+A+ F + EL GD++ V S W +G C G+ G FP V R
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 59
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSN 345
AEA+ ++EL GD + V + W G GWFP++ V R R+
Sbjct: 70 AEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV--RLRVNQDE 127
Query: 346 VADE 349
AD+
Sbjct: 128 PADD 131
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
AEA+ + +EL+ GD + V S W G+ + GWFP++ V
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 289 IHPFTAASEKE-LSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVE 336
++PF+ + L G+ + + +V GW EGE + G GWFP++ V+
Sbjct: 9 LYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
+A+ F + EL GD++ V S W +G C G+ G FP
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFP 50
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
+A+ F + EL GD++ V S W +G C G+ G FP
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFP 48
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
+ ++ EL L VGD + V GW EG GK G FPS
Sbjct: 16 YLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPS 56
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 273 PSENSSQKAVYFLAE--AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWF 330
PS + A + + + A++ + A +E ELS G + V W +GE G G F
Sbjct: 22 PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLF 81
Query: 331 PSANVE 336
PS V+
Sbjct: 82 PSNYVK 87
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 290 HPFTAASEKELSLGVGDYVV-VRKVSPSGWSEGECKGKAGWFPSANVEK 337
+ + A + EL++ VG+ + V+K+ GW EGE G+ G FP V++
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 55
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
AI+ F AA + EL+ G+ + V S W +GE G FPS
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPS 66
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEG--ECKGKAGWFPSANVEKRQ 339
F A++PF ++L L GD +VV + + G +EG C GW P N RQ
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71
Query: 340 R 340
R
Sbjct: 72 R 72
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A+A++P+ A + L+ D + V + W GE +G+ GWFP + V+
Sbjct: 15 AQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVK 64
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEG--ECKGKAGWFPSANVEKRQ 339
F A++PF ++L L GD +VV + + G +EG C GW P N RQ
Sbjct: 7 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 66
Query: 340 R 340
R
Sbjct: 67 R 67
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
++ +TA ++ EL+ G + V W +GE G+ G FPS V+
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 342
A++ F +E EL GD + + W EG G++G+FP VE +P
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVALP 70
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
+ ++ EL L VGD + V GW EG GK G FPS
Sbjct: 27 YLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPS 67
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
A++ F +E EL GD + + W EG G +G+FP VE +P S
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 250 ILGDV--EAEMVSEKQRKESAPPVI--PSENSSQKAVYFLAEAIHPFTAASEKELSLGVG 305
+LGD E + +SE R ++ PSEN V A++ F A+ + LS+ G
Sbjct: 8 VLGDQRREPQGLSEAARWNXKENLLAGPSENDPNLFV-----ALYDFVASGDNTLSITKG 62
Query: 306 DYVVVRKVSPSG-WSEGECKGKAGWFPS 332
+ + V + +G W E + K GW PS
Sbjct: 63 EKLRVLGYNHNGEWCEAQTKNGQGWVPS 90
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
A++ F + EL GD + + +S + W +G KG+ G PS V ++
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
A++ F + EL GD + + +S + W +G KG+ G PS V ++
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIP 342
+A++ F ++ EL GD + + W EG G++G+FP + V+ +P
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLVPLP 72
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
A++ F + EL + GD + + S + W +G KG+ G PS V
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A + L+L VGD V V +++ +G EGE G+ G FP +V+
Sbjct: 29 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPSANV 335
A++ F A+ + LS+ G+ + V + +G W E + K GW PSA +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPSANV 335
A++ F A+ + LS+ G+ + V + +G W E + K GW PSA +
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 53
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A + L+L VGD V V +++ +G EGE G+ G FP +V+
Sbjct: 14 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 285 LAEAIHPF--TAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFP 331
+ EAI F A + EL++ VG+ + + GW EG+ G+ G FP
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFP 49
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
+ +E EL L VGD + + + GW G K G FPS V+
Sbjct: 10 YIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVSN 345
AEA+ ++EL GD + V + W G GWFP++ V R R+
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV--RLRVNQDE 96
Query: 346 VADE 349
AD+
Sbjct: 97 PADD 100
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A + L+L VGD V V +++ +G EGE G+ G FP +V+
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
+ +E EL L VGD + + + GW G K G FPS V++
Sbjct: 16 YIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 294 AASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A + L+L VGD V V +++ +G EGE G+ G FP +V+
Sbjct: 250 AYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 292 FTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
++ +E EL L VGD + V + GW G K G FPS V++
Sbjct: 13 YSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKE 58
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 32.0 bits (71), Expect = 0.47, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS---GWSEGECKGKAGWFPSANVE 336
A+A++ A + ELS G V V PS GW EG GK G P VE
Sbjct: 13 AKALYACKAEHDSELSFTAG--TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 32.0 bits (71), Expect = 0.59, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
A++ +TA + EL L GD + V GW E G+ G+ P + +EK
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
A++ F A + EL+ G+ + V S + W +GE G FPS
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPS 54
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 273 PSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFP 331
PSEN V A++ F A+ + LS+ G+ + V + +G W E + K GW P
Sbjct: 3 PSENDPNLFV-----ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVP 57
Query: 332 S 332
S
Sbjct: 58 S 58
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPSANVE 336
A++ ++A E E+S GDY+V + GW G + G+ G P+ +E
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 244 HLRIAAILGDVEAEM--VSEKQRKESAPPVIPSENSSQKAVYFLAEA---IHPFTAASEK 298
H+ I +L A + SE QR P + +EN+ +AV +L +A + P A
Sbjct: 23 HVDICHMLVQAGANIDTCSEDQR---TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST 79
Query: 299 ELSLGV--GDYVVVRKVSPSGWSEGECKGKAGWFP 331
L L G Y VV+ + +G + C+ GW P
Sbjct: 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPS 332
A++ F A + EL+ G+ ++V S + W +GE G FPS
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPS 66
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPSANV 335
A++ F A+ + LS+ G+ + V + +G W E + K GW PS +
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSTYI 58
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
A+A+ +TA + L+ D + V + + W GE G GWFP + V+
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 62
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
L A++ + S +E+++ GD + + + W + E G+ G+ P+A V+K
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKK 60
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPS 332
A++ F A+ + LS+ G+ + V + +G W E + K GW PS
Sbjct: 7 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPS 52
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPS 332
A++ F A+ + LS+ G+ + V + +G W E + K GW PS
Sbjct: 9 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPS 54
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPS 332
A++ F A+ + LS+ G+ + V + +G W E + K GW PS
Sbjct: 5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPS 50
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPS 332
A++ F A+ + LS+ G+ + V + +G W E + K GW PS
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPS 55
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGECKGKAGWFPS 332
A++ F A+ + LS+ G+ + V + +G W E + K GW PS
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPS 55
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 277 SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSAN 334
SS KAV A++ F +L GD + + K S S W G G+ G FP+
Sbjct: 2 SSPKAV-----ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANY 56
Query: 335 VE 336
VE
Sbjct: 57 VE 58
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336
++ F ++ EL GD + + W EG G++G+FP VE
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPVS 344
A++ F ++L + GD + + + S W +G+ + + G+FP AN +R P S
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFP-ANFVQRLSGPSS 67
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
L A++ + S +E+++ GD + + + W + E G+ G+ P+A V+K
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKK 55
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQRIPVS 344
A+H ++A +EL L G+ + V GW +G G+ G FPS V IPVS
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV-----IPVS 65
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 289 IHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
+ P+T+ S+ E+ G V V + + GW GK GW P++ ++K
Sbjct: 14 VQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
A A H F+A ++ ELS G + ++ S W E GK G PS +E +
Sbjct: 3 AIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMK 56
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSANV 335
A A++ F +L+ GD + + K S S W G GK G FP+ V
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 276 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVV---RKVSPSGWSEGECKGKAGWFPS 332
+S V F+ +A++ + ++ ELS G + + G+ EGE G+ G FPS
Sbjct: 2 SSGSSGVCFV-KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 60
Query: 333 ANVEKRQRIPVS 344
VE+ P S
Sbjct: 61 VLVEELSSGPSS 72
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 292 FTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
F A ++ ELS GD + V+ + S W + E GK G+ P +E +
Sbjct: 9 FKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+A+ F EL+ GD + + W EG+ + G FPS V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+A+ F EL+ GD + + W EG+ + G FPS V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 288 AIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSANV 335
A++ F +L+ GD + V + S W EG+ +G+ G FP+ V
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVSPSGWSEGECKGKAGWFPSANVEKR 338
A A + F A ++ ELS GD + V+ + W + E GK G+ P +E +
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335
+A+ F EL+ GD + + W EG+ + G FPS V
Sbjct: 6 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKA 327
+ I+P+T ++ EL L GD++ + + + SEG G +
Sbjct: 20 QVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS 60
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
L ++ + S +EL++ GD + + + W + E G+ G+ P+A ++K
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 27.7 bits (60), Expect = 10.0, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337
L A++ + S +E+++ GD + + + W + E + G+ P+A V+K
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,490,398
Number of Sequences: 62578
Number of extensions: 308447
Number of successful extensions: 938
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 155
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)