Query 018756
Match_columns 351
No_of_seqs 281 out of 1563
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 1.4E-79 3.1E-84 546.5 23.6 207 48-256 1-208 (209)
2 KOG1118 Lysophosphatidic acid 100.0 2E-52 4.3E-57 396.7 21.2 293 12-343 2-366 (366)
3 cd07613 BAR_Endophilin_A1 The 100.0 2.2E-27 4.7E-32 220.7 16.9 151 76-260 59-218 (223)
4 cd07617 BAR_Endophilin_B2 The 100.0 7.6E-27 1.6E-31 216.5 19.6 173 47-257 19-219 (220)
5 cd07615 BAR_Endophilin_A3 The 99.9 9.8E-27 2.1E-31 216.5 19.8 154 72-259 54-217 (223)
6 cd07614 BAR_Endophilin_A2 The 99.9 3.9E-26 8.4E-31 212.6 16.8 150 76-259 59-217 (223)
7 cd07616 BAR_Endophilin_B1 The 99.9 5.5E-26 1.2E-30 212.2 17.9 184 47-258 19-229 (229)
8 cd07592 BAR_Endophilin_A The B 99.9 4.3E-25 9.3E-30 206.0 19.8 151 76-260 59-218 (223)
9 cd07594 BAR_Endophilin_B The B 99.9 1.6E-24 3.6E-29 202.7 20.7 180 47-257 19-228 (229)
10 cd07619 BAR_Rich2 The Bin/Amph 99.9 1.3E-22 2.9E-27 191.3 21.2 200 47-265 17-235 (248)
11 cd07620 BAR_SH3BP1 The Bin/Amp 99.9 1.9E-22 4.1E-27 189.9 21.7 201 38-262 12-241 (257)
12 cd07593 BAR_MUG137_fungi The B 99.9 3.5E-21 7.7E-26 178.8 21.1 150 79-257 49-207 (215)
13 cd07618 BAR_Rich1 The Bin/Amph 99.9 4E-21 8.6E-26 181.5 21.2 184 47-262 17-230 (246)
14 cd07595 BAR_RhoGAP_Rich-like T 99.8 1.3E-19 2.9E-24 171.3 21.5 156 80-262 56-228 (244)
15 cd07600 BAR_Gvp36 The Bin/Amph 99.8 2.1E-19 4.5E-24 169.7 16.9 217 13-257 11-241 (242)
16 KOG3725 SH3 domain protein SH3 99.7 5E-16 1.1E-20 146.1 20.1 279 48-338 37-374 (375)
17 KOG3771 Amphiphysin [Intracell 99.7 6.2E-15 1.3E-19 148.2 22.4 199 9-247 4-213 (460)
18 cd07307 BAR The Bin/Amphiphysi 99.5 4.1E-12 8.8E-17 111.0 21.6 187 61-255 6-192 (194)
19 PF03114 BAR: BAR domain; Int 99.5 6.7E-12 1.5E-16 113.3 23.0 223 12-258 2-228 (229)
20 smart00721 BAR BAR domain. 99.5 7.4E-12 1.6E-16 115.6 22.4 216 14-258 5-237 (239)
21 PF14604 SH3_9: Variant SH3 do 99.5 7.7E-14 1.7E-18 100.8 5.9 49 288-336 1-49 (49)
22 cd07588 BAR_Amphiphysin The Bi 99.4 2E-11 4.4E-16 113.5 21.0 172 59-259 27-207 (211)
23 cd07612 BAR_Bin2 The Bin/Amphi 99.4 3.4E-11 7.4E-16 111.7 19.5 178 45-259 19-207 (211)
24 PF07653 SH3_2: Variant SH3 do 99.3 2.1E-12 4.4E-17 95.0 6.3 54 285-338 1-55 (55)
25 cd07611 BAR_Amphiphysin_I_II T 99.3 1.6E-10 3.4E-15 107.3 19.9 178 45-259 19-207 (211)
26 KOG1029 Endocytic adaptor prot 99.3 8.2E-10 1.8E-14 116.4 23.9 60 283-342 693-754 (1118)
27 cd07590 BAR_Bin3 The Bin/Amphi 99.3 9.7E-10 2.1E-14 103.2 20.6 185 45-259 18-213 (225)
28 KOG2070 Guanine nucleotide exc 99.2 5.5E-12 1.2E-16 127.4 3.4 56 284-339 18-73 (661)
29 smart00326 SH3 Src homology 3 99.1 1.5E-10 3.3E-15 82.9 6.3 55 284-338 3-58 (58)
30 KOG2199 Signal transducing ada 99.1 4.1E-11 8.8E-16 118.6 3.2 57 283-339 215-271 (462)
31 KOG4226 Adaptor protein NCK/Do 99.1 1.8E-10 3.9E-15 109.6 7.1 98 246-343 63-167 (379)
32 PF00018 SH3_1: SH3 domain; I 99.1 1.9E-10 4.1E-15 82.2 5.5 46 287-332 1-48 (48)
33 cd00174 SH3 Src homology 3 dom 99.0 4.1E-10 8.9E-15 79.7 6.0 51 286-336 2-53 (54)
34 KOG1029 Endocytic adaptor prot 99.0 1.1E-10 2.4E-15 122.7 4.0 54 285-338 1055-1108(1118)
35 cd07604 BAR_ASAPs The Bin/Amph 99.0 4.2E-08 9E-13 91.6 19.9 184 67-258 21-212 (215)
36 KOG0162 Myosin class I heavy c 99.0 2.7E-10 5.9E-15 119.5 5.2 54 284-337 1052-1105(1106)
37 KOG4225 Sorbin and SH3 domain- 99.0 5.3E-10 1.1E-14 111.9 6.2 56 285-340 232-287 (489)
38 KOG2996 Rho guanine nucleotide 98.9 2.2E-09 4.8E-14 110.6 7.5 60 280-339 802-863 (865)
39 cd07639 BAR_ACAP1 The Bin/Amph 98.9 2.8E-07 6E-12 85.2 19.8 179 66-256 20-198 (200)
40 cd07606 BAR_SFC_plant The Bin/ 98.9 2.5E-07 5.3E-12 85.7 18.9 183 47-255 14-200 (202)
41 cd07603 BAR_ACAPs The Bin/Amph 98.9 3.7E-07 7.9E-12 84.4 19.7 180 65-256 19-198 (200)
42 KOG2856 Adaptor protein PACSIN 98.8 2.6E-07 5.5E-12 91.3 19.0 55 284-338 415-471 (472)
43 cd07591 BAR_Rvs161p The Bin/Am 98.8 6.2E-07 1.3E-11 84.2 20.5 177 58-258 25-211 (224)
44 KOG4348 Adaptor protein CMS/SE 98.8 8.6E-10 1.9E-14 110.4 0.7 59 282-340 99-157 (627)
45 KOG4348 Adaptor protein CMS/SE 98.8 2.5E-09 5.4E-14 107.1 3.2 56 284-339 262-319 (627)
46 cd07634 BAR_GAP10-like The Bin 98.8 9.8E-07 2.1E-11 81.9 19.3 188 61-256 15-205 (207)
47 cd07602 BAR_RhoGAP_OPHN1-like 98.7 2.6E-06 5.5E-11 79.2 19.4 183 65-256 19-205 (207)
48 KOG3523 Putative guanine nucle 98.7 1.9E-09 4.1E-14 111.5 -2.0 83 258-340 579-667 (695)
49 cd07637 BAR_ACAP3 The Bin/Amph 98.7 3.4E-06 7.5E-11 78.0 19.7 183 48-256 16-198 (200)
50 PF10455 BAR_2: Bin/amphiphysi 98.6 1.6E-06 3.4E-11 84.3 17.4 156 88-258 126-287 (289)
51 KOG4225 Sorbin and SH3 domain- 98.6 2.8E-08 6.1E-13 99.7 3.6 54 284-337 433-488 (489)
52 cd07642 BAR_ASAP2 The Bin/Amph 98.6 9.7E-06 2.1E-10 75.5 19.5 182 70-258 24-212 (215)
53 cd07601 BAR_APPL The Bin/Amphi 98.6 1.4E-05 3E-10 74.8 20.2 186 49-257 17-206 (215)
54 cd07636 BAR_GRAF The Bin/Amphi 98.5 1.5E-05 3.3E-10 74.1 19.7 186 61-255 15-204 (207)
55 cd07635 BAR_GRAF2 The Bin/Amph 98.5 2E-05 4.2E-10 73.4 19.7 182 65-255 19-204 (207)
56 KOG2546 Abl interactor ABI-1, 98.5 5.6E-08 1.2E-12 97.3 2.8 55 285-339 425-479 (483)
57 cd07638 BAR_ACAP2 The Bin/Amph 98.5 2.3E-05 5.1E-10 72.5 19.1 182 48-256 16-198 (200)
58 KOG1264 Phospholipase C [Lipid 98.5 6.9E-08 1.5E-12 102.7 2.5 59 283-341 774-833 (1267)
59 KOG4226 Adaptor protein NCK/Do 98.4 2.1E-07 4.5E-12 89.0 4.2 63 282-344 190-255 (379)
60 KOG0515 p53-interacting protei 98.4 3.2E-07 7E-12 94.2 4.6 78 244-341 664-744 (752)
61 KOG3655 Drebrins and related a 98.3 1.8E-07 3.9E-12 94.8 1.3 55 284-338 428-483 (484)
62 KOG1702 Nebulin repeat protein 98.3 5.5E-07 1.2E-11 83.0 4.2 55 284-338 208-264 (264)
63 cd07599 BAR_Rvs167p The Bin/Am 98.3 0.00019 4.2E-09 66.5 20.7 133 111-252 72-210 (216)
64 cd07598 BAR_FAM92 The Bin/Amph 98.2 0.00032 7E-09 65.5 21.3 179 67-260 23-204 (211)
65 cd07589 BAR_DNMBP The Bin/Amph 98.2 8.7E-05 1.9E-09 68.2 17.0 158 58-251 19-186 (195)
66 cd07641 BAR_ASAP1 The Bin/Amph 98.2 0.00037 8E-09 65.0 19.8 200 38-258 6-212 (215)
67 PF08397 IMD: IRSp53/MIM homol 98.2 0.00049 1.1E-08 64.2 21.0 194 48-259 10-209 (219)
68 KOG3601 Adaptor protein GRB2, 98.1 1E-06 2.3E-11 81.4 2.5 56 283-338 163-218 (222)
69 KOG3875 Peroxisomal biogenesis 98.1 1.5E-06 3.3E-11 84.3 3.5 59 284-342 269-334 (362)
70 KOG4792 Crk family adapters [S 98.0 1.3E-06 2.9E-11 81.7 1.1 60 283-342 124-184 (293)
71 cd07633 BAR_OPHN1 The Bin/Amph 98.0 0.0008 1.7E-08 62.5 18.9 177 65-255 19-204 (207)
72 cd07640 BAR_ASAP3 The Bin/Amph 98.0 0.0015 3.3E-08 60.5 20.1 185 67-258 21-210 (213)
73 KOG1843 Uncharacterized conser 98.0 3.2E-06 7E-11 84.6 2.5 54 284-337 417-472 (473)
74 KOG4773 NADPH oxidase [Energy 97.9 2.5E-06 5.4E-11 83.9 -0.2 66 278-343 170-235 (386)
75 cd07631 BAR_APPL1 The Bin/Amph 97.9 0.005 1.1E-07 57.6 21.0 183 44-256 19-205 (215)
76 PF06456 Arfaptin: Arfaptin-li 97.8 0.0096 2.1E-07 56.3 22.6 216 19-251 13-229 (229)
77 cd07596 BAR_SNX The Bin/Amphip 97.8 0.0065 1.4E-07 54.9 20.1 162 87-255 43-216 (218)
78 KOG2222 Uncharacterized conser 97.8 4.2E-06 9.1E-11 85.4 -1.0 57 283-339 548-604 (848)
79 PF09325 Vps5: Vps5 C terminal 97.7 0.013 2.9E-07 54.1 21.4 161 85-254 61-233 (236)
80 cd07605 I-BAR_IMD Inverse (I)- 97.6 0.018 3.9E-07 54.3 21.1 175 69-253 34-214 (223)
81 cd07632 BAR_APPL2 The Bin/Amph 97.6 0.012 2.6E-07 55.0 18.9 159 88-256 42-204 (215)
82 KOG1451 Oligophrenin-1 and rel 97.4 0.00014 3.1E-09 75.9 4.2 95 60-157 32-135 (812)
83 cd07624 BAR_SNX7_30 The Bin/Am 97.4 0.023 4.9E-07 52.4 18.2 127 107-253 67-196 (200)
84 cd07643 I-BAR_IMD_MIM Inverse 97.3 0.046 9.9E-07 51.7 19.7 153 88-245 48-208 (231)
85 KOG4429 Uncharacterized conser 97.3 6.5E-05 1.4E-09 72.8 0.5 54 285-338 365-418 (421)
86 KOG4792 Crk family adapters [S 97.3 0.00056 1.2E-08 64.4 6.6 57 284-340 228-286 (293)
87 KOG2528 Sorting nexin SNX9/SH3 97.3 9.8E-05 2.1E-09 74.9 1.6 61 285-345 4-66 (490)
88 cd07623 BAR_SNX1_2 The Bin/Amp 97.3 0.052 1.1E-06 50.9 19.6 186 46-255 24-220 (224)
89 KOG4278 Protein tyrosine kinas 97.3 0.00025 5.3E-09 75.3 4.2 57 284-341 91-149 (1157)
90 KOG3632 Peripheral benzodiazep 97.2 0.00024 5.2E-09 77.7 3.7 55 285-339 1140-1203(1335)
91 cd07625 BAR_Vps17p The Bin/Amp 97.0 0.33 7.1E-06 46.1 23.9 208 21-255 5-228 (230)
92 PF06730 FAM92: FAM92 protein; 96.8 0.35 7.6E-06 45.6 19.9 163 83-258 46-209 (219)
93 cd07627 BAR_Vps5p The Bin/Amph 96.6 0.61 1.3E-05 43.4 21.3 157 87-251 43-210 (216)
94 KOG0197 Tyrosine kinases [Sign 96.6 0.0012 2.5E-08 68.3 2.5 56 283-338 11-69 (468)
95 cd07660 BAR_Arfaptin The Bin/A 96.5 0.45 9.8E-06 44.3 18.8 178 66-254 20-197 (201)
96 KOG3775 Mitogen-activated prot 96.5 0.0014 3E-08 65.6 2.3 56 285-340 264-321 (482)
97 KOG4575 TGc (transglutaminase/ 96.5 0.0039 8.5E-08 65.9 5.6 53 284-337 9-64 (874)
98 KOG3557 Epidermal growth facto 96.3 0.0017 3.7E-08 68.6 1.4 56 285-341 502-558 (721)
99 cd00011 BAR_Arfaptin_like The 96.2 1 2.2E-05 42.1 19.9 175 65-254 19-200 (203)
100 KOG0040 Ca2+-binding actin-bun 96.2 0.0048 1E-07 70.3 4.8 198 69-341 827-1026(2399)
101 cd07628 BAR_Atg24p The Bin/Amp 96.1 0.54 1.2E-05 42.9 17.0 118 107-253 58-181 (185)
102 KOG3632 Peripheral benzodiazep 96.1 0.0049 1.1E-07 67.8 3.7 57 284-340 448-512 (1335)
103 KOG0609 Calcium/calmodulin-dep 96.0 0.0023 4.9E-08 66.6 0.8 55 284-338 215-281 (542)
104 cd07664 BAR_SNX2 The Bin/Amphi 95.9 1.7 3.8E-05 41.3 20.9 97 31-146 17-116 (234)
105 cd07666 BAR_SNX7 The Bin/Amphi 95.7 0.57 1.2E-05 44.8 15.6 141 88-250 87-236 (243)
106 cd07621 BAR_SNX5_6 The Bin/Amp 95.6 2.1 4.5E-05 40.5 21.1 148 87-252 63-212 (219)
107 KOG0521 Putative GTPase activa 95.5 0.43 9.4E-06 52.7 15.8 182 39-246 23-208 (785)
108 KOG3601 Adaptor protein GRB2, 95.4 0.0023 5E-08 59.6 -1.5 52 286-337 3-55 (222)
109 cd07646 I-BAR_IMD_IRSp53 Inver 95.4 2.5 5.5E-05 40.1 20.7 174 67-253 34-217 (232)
110 cd07663 BAR_SNX5 The Bin/Amphi 95.4 2.5 5.4E-05 39.9 21.6 132 105-252 75-211 (218)
111 cd07622 BAR_SNX4 The Bin/Amphi 95.3 2.2 4.8E-05 39.6 17.6 146 88-256 47-198 (201)
112 KOG1451 Oligophrenin-1 and rel 95.2 1.8 3.8E-05 46.3 18.1 29 232-260 198-233 (812)
113 cd07659 BAR_PICK1 The Bin/Amph 95.0 3.2 6.8E-05 39.0 19.0 174 66-253 20-209 (215)
114 KOG3565 Cdc42-interacting prot 94.8 0.0088 1.9E-07 64.2 0.3 57 283-339 578-637 (640)
115 cd07665 BAR_SNX1 The Bin/Amphi 94.5 4.6 0.0001 38.5 19.7 81 48-146 36-116 (234)
116 cd07645 I-BAR_IMD_BAIAP2L1 Inv 94.4 4.6 9.9E-05 38.3 20.4 174 65-253 30-215 (226)
117 cd07626 BAR_SNX9_like The Bin/ 94.4 4 8.6E-05 38.0 16.8 42 104-145 63-104 (199)
118 cd07649 F-BAR_GAS7 The F-BAR ( 93.6 6.7 0.00015 37.2 19.9 46 105-150 55-100 (233)
119 cd07630 BAR_SNX_like The Bin/A 93.3 6.7 0.00015 36.3 20.7 174 46-253 16-194 (198)
120 PF08239 SH3_3: Bacterial SH3 93.2 0.18 3.8E-06 36.2 4.5 36 301-336 18-55 (55)
121 KOG0199 ACK and related non-re 92.0 0.14 3E-06 55.7 3.6 49 288-336 379-430 (1039)
122 cd07662 BAR_SNX6 The Bin/Amphi 91.6 12 0.00027 35.3 19.1 176 46-253 35-212 (218)
123 cd07651 F-BAR_PombeCdc15_like 91.5 12 0.00026 35.0 19.6 41 107-147 57-97 (236)
124 cd07667 BAR_SNX30 The Bin/Amph 91.1 15 0.00032 35.2 19.6 128 104-253 101-236 (240)
125 cd07658 F-BAR_NOSTRIN The F-BA 90.9 15 0.00032 34.9 20.9 90 51-147 8-99 (239)
126 cd07657 F-BAR_Fes_Fer The F-BA 90.6 16 0.00034 34.7 19.8 66 104-169 59-130 (237)
127 cd07629 BAR_Atg20p The Bin/Amp 90.6 13 0.00029 33.9 18.5 41 106-146 59-99 (187)
128 cd07644 I-BAR_IMD_BAIAP2L2 Inv 90.4 16 0.00035 34.4 18.8 76 65-148 30-106 (215)
129 cd07653 F-BAR_CIP4-like The F- 89.3 19 0.00041 33.7 20.5 41 106-146 61-101 (251)
130 cd07676 F-BAR_FBP17 The F-BAR 88.0 26 0.00056 33.7 18.6 113 52-167 9-130 (253)
131 smart00287 SH3b Bacterial SH3 87.7 0.88 1.9E-05 33.2 4.0 35 301-335 26-61 (63)
132 PF14603 hSH3: Helically-exten 87.6 0.95 2.1E-05 36.9 4.3 43 296-338 29-72 (89)
133 PRK10884 SH3 domain-containing 87.2 0.61 1.3E-05 43.6 3.5 38 301-338 49-88 (206)
134 KOG3651 Protein kinase C, alph 86.3 37 0.0008 34.0 15.2 165 74-255 158-341 (429)
135 KOG3812 L-type voltage-depende 84.9 0.47 1E-05 47.5 1.6 36 297-332 79-117 (475)
136 cd07652 F-BAR_Rgd1 The F-BAR ( 84.1 38 0.00083 32.0 14.3 40 106-146 61-100 (234)
137 KOG2996 Rho guanine nucleotide 82.9 0.56 1.2E-05 49.9 1.2 44 299-342 626-672 (865)
138 cd07610 FCH_F-BAR The Extended 82.0 36 0.00078 30.1 19.7 89 106-206 53-141 (191)
139 PF06347 SH3_4: Bacterial SH3 81.3 2.9 6.4E-05 30.1 4.2 35 300-335 19-53 (55)
140 cd07673 F-BAR_FCHO2 The F-BAR 80.7 56 0.0012 31.5 24.5 183 52-246 16-219 (269)
141 cd07675 F-BAR_FNBP1L The F-BAR 77.4 71 0.0015 30.8 19.6 60 86-146 40-102 (252)
142 cd07655 F-BAR_PACSIN The F-BAR 74.8 80 0.0017 30.1 21.0 39 107-145 61-99 (258)
143 cd07597 BAR_SNX8 The Bin/Amphi 74.7 79 0.0017 30.0 18.9 144 106-256 87-244 (246)
144 cd07648 F-BAR_FCHO The F-BAR ( 73.2 85 0.0019 29.7 18.1 135 106-246 56-212 (261)
145 KOG3705 Glycoprotein 6-alpha-L 72.5 3.3 7.1E-05 42.6 3.1 53 285-337 511-565 (580)
146 KOG3876 Arfaptin and related p 72.4 1E+02 0.0022 30.3 18.5 206 19-253 109-319 (341)
147 KOG4384 Uncharacterized SAM do 70.3 3.9 8.3E-05 41.2 3.0 54 285-338 138-193 (361)
148 cd07609 BAR_SIP3_fungi The Bin 67.0 1.1E+02 0.0025 28.7 15.5 84 110-207 63-152 (214)
149 cd07686 F-BAR_Fer The F-BAR (F 66.7 1.2E+02 0.0026 28.9 19.2 42 105-146 60-101 (234)
150 cd07681 F-BAR_PACSIN3 The F-BA 65.8 1.3E+02 0.0029 29.1 19.0 38 106-143 60-97 (258)
151 cd07680 F-BAR_PACSIN1 The F-BA 65.1 1.4E+02 0.003 28.9 19.9 37 106-142 60-96 (258)
152 PRK13914 invasion associated s 64.4 9.4 0.0002 40.1 4.6 39 300-338 103-142 (481)
153 PF15290 Syntaphilin: Golgi-lo 64.1 93 0.002 30.7 10.9 57 135-223 57-115 (305)
154 PF11302 DUF3104: Protein of u 60.9 9.3 0.0002 30.3 2.9 25 299-323 3-33 (75)
155 COG3103 SH3 domain protein [Si 60.1 12 0.00026 35.0 4.1 38 301-338 49-88 (205)
156 cd07650 F-BAR_Syp1p_like The F 57.0 1.7E+02 0.0037 27.4 19.8 43 107-149 59-101 (228)
157 smart00743 Agenet Tudor-like d 56.3 14 0.0003 27.0 3.1 23 301-323 2-24 (61)
158 cd07593 BAR_MUG137_fungi The B 55.6 1.8E+02 0.004 27.3 13.9 124 106-252 54-188 (215)
159 smart00307 ILWEQ I/LWEQ domain 50.2 2.2E+02 0.0048 26.6 12.9 35 39-73 6-41 (200)
160 KOG0994 Extracellular matrix g 48.1 5.5E+02 0.012 30.6 16.7 22 40-61 1590-1611(1758)
161 cd07674 F-BAR_FCHO1 The F-BAR 45.7 2.8E+02 0.006 26.5 21.9 39 106-145 56-94 (261)
162 cd07656 F-BAR_srGAP The F-BAR 44.6 2.9E+02 0.0062 26.3 18.1 65 110-174 70-140 (241)
163 cd07634 BAR_GAP10-like The Bin 40.7 3.2E+02 0.0068 25.7 14.1 61 40-100 7-77 (207)
164 PF10456 BAR_3_WASP_bdg: WASP- 39.0 3.5E+02 0.0077 25.8 17.4 25 231-255 209-233 (237)
165 cd07605 I-BAR_IMD Inverse (I)- 37.6 3.6E+02 0.0078 25.5 18.3 104 70-180 21-134 (223)
166 PF08397 IMD: IRSp53/MIM homol 37.1 3.4E+02 0.0074 25.1 17.1 58 70-134 11-75 (219)
167 PF12913 SH3_6: SH3 domain of 35.0 71 0.0015 23.7 3.9 32 301-332 22-54 (54)
168 TIGR03185 DNA_S_dndD DNA sulfu 34.2 6.3E+02 0.014 27.3 26.9 87 3-97 266-358 (650)
169 KOG3312 Predicted membrane pro 34.2 1.4E+02 0.0031 26.9 6.4 48 159-207 35-83 (186)
170 PF03114 BAR: BAR domain; Int 33.8 3.3E+02 0.0071 23.9 14.4 64 116-181 91-154 (229)
171 KOG3208 SNARE protein GS28 [In 32.5 1.3E+02 0.0028 28.8 6.1 39 2-46 8-48 (231)
172 TIGR03545 conserved hypothetic 31.0 5.7E+02 0.012 27.5 11.5 67 142-209 152-230 (555)
173 KOG2008 BTK-associated SH3-dom 28.7 6.3E+02 0.014 25.6 20.0 49 46-99 15-65 (426)
174 PF06160 EzrA: Septation ring 27.7 7.8E+02 0.017 26.3 15.7 145 114-260 54-205 (560)
175 cd07669 BAR_SNX33 The Bin/Amph 27.5 5.3E+02 0.012 24.3 16.0 24 231-254 180-203 (207)
176 cd07665 BAR_SNX1 The Bin/Amphi 26.1 5.8E+02 0.013 24.3 15.5 35 116-152 79-113 (234)
177 PF15642 Tox-ODYAM1: Toxin in 25.6 6.8E+02 0.015 24.9 12.4 117 105-223 58-195 (385)
178 PF03333 PapB: Adhesin biosynt 25.1 1.4E+02 0.003 24.6 4.4 38 65-115 40-77 (91)
179 cd07654 F-BAR_FCHSD The F-BAR 25.0 6.3E+02 0.014 24.4 18.0 56 114-169 74-135 (264)
180 KOG3584 cAMP response element 23.2 1.2E+02 0.0026 30.2 4.3 48 30-77 276-323 (348)
181 KOG1314 DHHC-type Zn-finger pr 22.6 67 0.0014 32.8 2.5 44 295-339 329-384 (414)
182 PF05911 DUF869: Plant protein 22.0 1.2E+03 0.025 26.4 14.9 59 157-215 80-151 (769)
183 KOG4673 Transcription factor T 21.1 1.2E+03 0.026 26.2 15.2 127 121-260 420-555 (961)
184 PRK04778 septation ring format 20.7 1E+03 0.023 25.3 13.3 145 114-260 58-209 (569)
185 cd07647 F-BAR_PSTPIP The F-BAR 20.6 7E+02 0.015 23.3 19.1 41 106-147 56-96 (239)
186 PF09606 Med15: ARC105 or Med1 20.5 34 0.00073 38.3 0.0 57 135-202 547-604 (799)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=1.4e-79 Score=546.48 Aligned_cols=207 Identities=54% Similarity=0.842 Sum_probs=203.4
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
|+|||||+||||||||||||||||||||++|+||+|++++|+|||||||+|++ +.+++|++|.++||.|+++|+++++
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~--~~~~~LsrAa~~yG~a~~~mEkEre 78 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP--SVNTALSRASLHYGSARNQMEKERE 78 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC--CcccHHHHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998 4677899999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHH
Q 018756 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN 206 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~ 206 (351)
+|++.|++||+|||++|++|+||||||||+|+||||||++|+|++||.||+.|+||+. |||++.||+.||+||+|||++
T Consensus 79 ~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~ 158 (209)
T cd07607 79 NLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS 158 (209)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 207 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 207 m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
|+.|||||.+||.+||+||||+|+++|++||+++++||+++++||++|+.
T Consensus 159 M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~ 208 (209)
T cd07607 159 MNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD 208 (209)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999985
No 2
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-52 Score=396.68 Aligned_cols=293 Identities=20% Similarity=0.336 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccceecHH--HHH-----HHHHHHHHHhhhhc---------hhhhhHHHHHHhHHHh
Q 018756 12 KEQVAKQQQAVIKQFSASGYERSDVMVIDEV--EMQ-----RHQQLEKLYRSTRG---------TKDFQRDLVKVAEVFT 75 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~---------~~~~q~~~vr~~~~~~ 75 (351)
+.|.+|-+|-+=..|||.- ..=+|.. ||. +.--+-+|+.+|-- ||----.++.-|+|-.
T Consensus 2 ~kqF~ka~Q~~sEK~ggae-----~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~ 76 (366)
T KOG1118|consen 2 KKQFNKASQWTSEKVGGAE-----GTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV 76 (366)
T ss_pred chHHHHHHHHhcccccccc-----CCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence 4566777888888888431 2222322 222 23345566666521 1222224666677755
Q ss_pred -hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--
Q 018756 76 -AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED-- 152 (351)
Q Consensus 76 -~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~-- 152 (351)
..||||+|+ .||+||.+||.++| .+|+||.+|+++|+||++|++++++|+++|+++|||||++++.++++++
T Consensus 77 k~~~ypq~e~--~Lg~~mik~gkeLg---~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~h 151 (366)
T KOG1118|consen 77 KEKGYPQTEG--LLGDVMIKHGKELG---DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQH 151 (366)
T ss_pred cCCCCccchh--HHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Confidence 579999999 89999999999999 8999999999999999999999999999999999999999999999985
Q ss_pred ------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHh
Q 018756 153 ------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQ 225 (351)
Q Consensus 153 ------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qq 225 (351)
||||||||++ +|+.|++| ++|++|.+||+|+++. |+..|.++ |.+.
T Consensus 152 h~KKLEgRRldyD~kk-------------kk~~K~~d-------EelrqA~eKfEESkE~-------aE~sM~nlle~d~ 204 (366)
T KOG1118|consen 152 HRKKLEGRRLDYDYKK-------------KKQGKIKD-------EELRQALEKFEESKEL-------AEDSMFNLLENDV 204 (366)
T ss_pred HHHHhhhhhhHHHHHH-------------HHhccCCh-------HHHHHHHHHHHHHHHH-------HHHHHHHHHhcCH
Confidence 9999999999 89999764 8999999999999998 99999975 6677
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh------hhccCCCCCC---------CCC---C------------
Q 018756 226 HRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE------KQRKESAPPV---------IPS---E------------ 275 (351)
Q Consensus 226 q~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se------~~r~esa~~~---------~~~---~------------ 275 (351)
+| ++||.+||+++++||+++++||+.|...+.+. +++.++.|.+ .++ +
T Consensus 205 eq--vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~~s~T~~t~~~ 282 (366)
T KOG1118|consen 205 EQ--VSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGKLSKTTSTPQS 282 (366)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCCCCcCccCccc
Confidence 77 89999999999999999999999999987652 2222222111 000 0
Q ss_pred ------------CCC----ccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 276 ------------NSS----QKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 276 ------------s~~----~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
+.+ +++..++|+++|||+|++++||.|+.||+|.|++++++|||+|+..|.+|+||.|||+++.
T Consensus 283 ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 283 ASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV 362 (366)
T ss_pred cCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence 000 2345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018756 340 RIPV 343 (351)
Q Consensus 340 ~~p~ 343 (351)
|+|.
T Consensus 363 pl~~ 366 (366)
T KOG1118|consen 363 PLPQ 366 (366)
T ss_pred cCCC
Confidence 9874
No 3
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.95 E-value=2.2e-27 Score=220.74 Aligned_cols=151 Identities=25% Similarity=0.400 Sum_probs=137.1
Q ss_pred hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756 76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 152 (351)
Q Consensus 76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 152 (351)
.++|||+|+ .||+||.+||.++| .+|+||.||+.||+|+++|+.++.+++..++++||+||+.+..++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~G~elg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~ 133 (223)
T cd07613 59 GPGYPQAEA--LLAEAMLKFGRELG---DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHH 133 (223)
T ss_pred CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999 89999999999999 8999999999999999999999999999999999999999999999875
Q ss_pred -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756 153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH 226 (351)
Q Consensus 153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq 226 (351)
+|||||||+| +|..++ ++ ++|+.|+.||+++++. +...|.++ ++...
T Consensus 134 RKkLe~rRLd~D~~K-------------~r~~k~-----~e--eElr~A~~kFees~E~-------a~~~M~n~l~~e~e 186 (223)
T cd07613 134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNLLEMDIE 186 (223)
T ss_pred HHHHHHHHHhHHHHH-------------HhCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHcCch
Confidence 9999999998 666554 33 8999999999999998 88888875 44455
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756 227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s 260 (351)
+ +++|.+||+|+++||++|.+||.+|...+..
T Consensus 187 ~--~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 187 Q--VSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 7899999999999999999999999998863
No 4
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.95 E-value=7.6e-27 Score=216.49 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=148.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhHHHh-------------------hcCcchhhhhhhhhHHHhhhhccCCCCCCCCc
Q 018756 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI 107 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~ 107 (351)
.++|++.--+|+.+- .+|++.++.++ .+++||+|. .||+||.+||.++| .+|+
T Consensus 19 f~~l~~~~D~tk~~~---~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~--~Lg~~M~~~g~~~g---~~s~ 90 (220)
T cd07617 19 FENLLARADSTKNWT---EKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAE--LLGQYMTEAANDFG---PGTP 90 (220)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence 567888877777654 24554444432 457899999 89999999999999 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHH
Q 018756 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ 179 (351)
Q Consensus 108 ~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~ 179 (351)
||.||+.||+|+++|++++++++..++++||+||++++.++++++ +|||||||.| +|+.
T Consensus 91 ~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K-------------~r~~ 157 (220)
T cd07617 91 YGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACK-------------ARLK 157 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence 999999999999999999999999999999999999999999875 9999999999 6655
Q ss_pred hhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018756 180 RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (351)
Q Consensus 180 k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~ 257 (351)
| ++ .+|++|++||++.++. +...|..| +.+..+ +.+|.+||+|+++||++|++||.+|...
T Consensus 158 k------ae--~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~--l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 158 K------AE--HELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH--LRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred c------cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 34 7999999999999997 78888876 444555 8999999999999999999999999865
No 5
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.95 E-value=9.8e-27 Score=216.51 Aligned_cols=154 Identities=23% Similarity=0.386 Sum_probs=138.5
Q ss_pred HHHh-hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 018756 72 EVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL 150 (351)
Q Consensus 72 ~~~~-~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~ 150 (351)
+|=. .++|||.|+ .||+||.+||.++| .+|+||.||+.||+|+++|+.++.+++..++++||+||+.++.++++
T Consensus 54 ~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik 128 (223)
T cd07615 54 RGQVKTTGYPQTEG--LLGDCMLRYGRELG---EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLK 128 (223)
T ss_pred hcccccCCCCCchh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 578999999 89999999999999 89999999999999999999999999999999999999999999998
Q ss_pred hh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-
Q 018756 151 ED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI- 221 (351)
Q Consensus 151 e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v- 221 (351)
++ +||||+||.| +|..+. ++ +++++|+.||+++++. +...|.++
T Consensus 129 ~i~k~RKkLe~rRLd~D~~K-------------~r~~k~-----~~--eE~~~A~~kfees~E~-------a~~~M~n~l 181 (223)
T cd07615 129 EIGHHLKKLEGRRLDFDYKK-------------KRQGKI-----PD--EEIRQAVEKFEESKEL-------AERSMFNFL 181 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HcCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 74 9999999998 555553 23 7999999999999998 88889875
Q ss_pred HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 222 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 222 e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
+.+.++ +++|.+||+|+++||++|++||.+|...+.
T Consensus 182 e~e~e~--~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 182 ENDVEQ--VSQLSVLIEAALDYHRQSTEILEDLQSKLQ 217 (223)
T ss_pred HcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 899999999999999999999999999886
No 6
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.94 E-value=3.9e-26 Score=212.61 Aligned_cols=150 Identities=25% Similarity=0.422 Sum_probs=135.4
Q ss_pred hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756 76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 152 (351)
Q Consensus 76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 152 (351)
.+||||+|+ .||+||.+||.++| ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~ 133 (223)
T cd07614 59 NPGYPQSEG--LLGETMIRYGKELG---DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH 133 (223)
T ss_pred CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999 89999999999999 8999999999999999999999999999999999999999999999874
Q ss_pred -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756 153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH 226 (351)
Q Consensus 153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq 226 (351)
+|||||||.| +|..|. ++ ++|+.|.+||+++++. +...|..+ +.+..
T Consensus 134 RKkLe~rRLdyD~~K-------------~r~~k~-----~e--eelr~a~ekFees~E~-------a~~~M~~il~~e~e 186 (223)
T cd07614 134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQAMEKFEESKEV-------AETSMHNLLETDIE 186 (223)
T ss_pred HHHHHHHHHHHHHHH-------------HcCCCC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCChH
Confidence 9999999998 555553 33 7999999999999998 88888875 33344
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
+ +.+|..||+|+++||++|++||.+|...+.
T Consensus 187 ~--~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 187 Q--VSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 789999999999999999999999999887
No 7
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.94 E-value=5.5e-26 Score=212.25 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=149.4
Q ss_pred HHHHHHHHhhhhchhh-hhHH----------------HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchh
Q 018756 47 HQQLEKLYRSTRGTKD-FQRD----------------LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILP 109 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~q~~----------------~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~ 109 (351)
.++|||.--+|+.+-+ ..+. ++..+.|=+ ++|||+|. .||+||.+||.++| .+|.||
T Consensus 19 f~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~-~~~~~~~~--~Lg~~M~~~g~~~g---~~S~~G 92 (229)
T cd07616 19 LENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKA-PSRMNNPE--LLGQYMIDAGNEFG---PGTAYG 92 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccC-CCCCChHH--HHHHHHHHHHHhcC---CCCcHH
Confidence 5677777777765532 2221 122233322 68999999 89999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhh
Q 018756 110 KAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRV 181 (351)
Q Consensus 110 ~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~ 181 (351)
.||+.||+|+++|++++.+|...++++|++||++.+.++++++ +|||||||.| .|..|.
T Consensus 93 ~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K-------------~r~~kA 159 (229)
T cd07616 93 NALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAK-------------TRLKKA 159 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcC
Confidence 9999999999999999999999999999999999999999874 9999999999 666664
Q ss_pred hcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 182 REAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 182 re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
+... .+....+|+.|++||++..+. +...|..+-+ +..+ +.+|..||+|++.||++|++||.+|...+
T Consensus 160 k~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~--~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l 229 (229)
T cd07616 160 KVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH--LRCLNDFVEAQMTYYAQCYQYMLDLQKQL 229 (229)
T ss_pred CcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4333 443458999999999999998 7777776643 3444 78999999999999999999999998653
No 8
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.93 E-value=4.3e-25 Score=205.98 Aligned_cols=151 Identities=25% Similarity=0.407 Sum_probs=134.2
Q ss_pred hcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 018756 76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 152 (351)
Q Consensus 76 ~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 152 (351)
..+|||+|+ .||+||.+||.++| ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~g~elg---~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~ 133 (223)
T cd07592 59 STKYPQPEG--LLGEVMLKYGRELG---EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH 133 (223)
T ss_pred ccCCCCccc--HHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999 89999999999999 7899999999999999999999999999999999999999999998874
Q ss_pred -----hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 018756 153 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH 226 (351)
Q Consensus 153 -----~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq 226 (351)
+|||||||.| +|..|. ++ ++|+.|+.||+++++. +...|..+ +.+..
T Consensus 134 RKkLe~rRLdyD~~k-------------~k~~k~-----~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e 186 (223)
T cd07592 134 RKKLEGRRLDYDYKK-------------RKQGKG-----PD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE 186 (223)
T ss_pred HHHHHHHHHHHHHHH-------------HhcccC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH
Confidence 9999999998 444442 34 8999999999999998 77788765 33344
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756 227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s 260 (351)
+ +..|..||+|+++||++|+++|.+|..++..
T Consensus 187 ~--~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 187 Q--VSQLSALVEAQLDYHRQSAEILEELQSKLQE 218 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999998863
No 9
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.93 E-value=1.6e-24 Score=202.68 Aligned_cols=180 Identities=17% Similarity=0.242 Sum_probs=147.7
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhHHHh--------------------hcCcchhhhhhhhhHHHhhhhccCCCCCCCC
Q 018756 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT--------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINEN 106 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~--------------------~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~ 106 (351)
..+||+-.-+|+.+-+ +|++..+.++ ..+||+.|. ||+||..||.++| .+|
T Consensus 19 f~~le~~~d~~~~~~e---~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~---Lg~~M~~~g~~lg---~~S 89 (229)
T cd07594 19 FENLLQRADKTKVWTE---KILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ---LGQAMIEAGNDFG---PGT 89 (229)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH---HHHHHHHHHhhCC---CCC
Confidence 4567777766665432 3444444443 458999986 9999999999999 789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHH
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ 178 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq 178 (351)
.||.||+.||+|+++|+.++.+++..++++||+||++++.++++++ +||||||+.| .|.
T Consensus 90 ~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k-------------~r~ 156 (229)
T cd07594 90 AYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACK-------------TRV 156 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 9999999999999999999999999999999999999999999875 9999999999 555
Q ss_pred HhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 179 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 179 ~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
.|.+-.. .+....+|+.|+.||++..+. +...|..|-+ +..+ +.+|..||+|+++||++|++||.+|..
T Consensus 157 ~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~--~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 157 KKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH--LRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred hhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5543111 223348999999999999998 8888887633 4455 889999999999999999999999986
Q ss_pred H
Q 018756 257 E 257 (351)
Q Consensus 257 ~ 257 (351)
.
T Consensus 228 ~ 228 (229)
T cd07594 228 Q 228 (229)
T ss_pred h
Confidence 5
No 10
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.90 E-value=1.3e-22 Score=191.29 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=141.8
Q ss_pred HHHHHHHHhhhhchhh-hhHHHHHHhHHH-------hhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHH
Q 018756 47 HQQLEKLYRSTRGTKD-FQRDLVKVAEVF-------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDA 118 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~q~~~vr~~~~~-------~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a 118 (351)
.++|||---+|+.+-| ..|.+.-|+-+- -..+|||+ .||+||.+||+++| .+|.||.||..||+|
T Consensus 17 ~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~----~L~q~M~~~g~elg---~~s~lg~aL~~~gea 89 (248)
T cd07619 17 LLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLT----TLAQCMVEGAAVLG---DDSLLGKMLKLCGET 89 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHH----HHHHHHHHHHHhcC---CCchHHHHHHHHHHH
Confidence 5678888777776543 334433333321 23467765 59999999999999 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHH--HhhhcCCCcc
Q 018756 119 RKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ--QRVREAPNPE 188 (351)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq--~k~re~~~~~ 188 (351)
+++|++++.+++..++++|++||++++++|++++ +||||+||.|-|..--+-...-..+. .+.+ ..+
T Consensus 90 ~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k---~e~ 166 (248)
T cd07619 90 EDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAK---ADA 166 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCc---cHH
Confidence 9999999999999999999999999999999875 99999999994433100000000000 0111 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhcc
Q 018756 189 NVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRK 265 (351)
Q Consensus 189 ~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~~r~ 265 (351)
+-.+++.|+.+|+..|.. ++..|.. +....+. +..|+.||+|+.+||+++++||+.+...+......|
T Consensus 167 lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~--~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~ 235 (248)
T cd07619 167 LREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY--ANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAW 235 (248)
T ss_pred HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555666666666555 4555554 3333343 677999999999999999999999999987654444
No 11
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.90 E-value=1.9e-22 Score=189.95 Aligned_cols=201 Identities=12% Similarity=0.081 Sum_probs=151.5
Q ss_pred eecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHhHHHhhc-----CcchhhhhhhhhHHHhhhhccCCCCCCCCchhHH
Q 018756 38 VIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFTAI-----GYKHIEAGTKLSEDCCRYGAENNQNINENILPKA 111 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~~~-----~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a 111 (351)
|+||. -+++||---.||.+ -+..|.++-|.-|-.++ -.|-+|+ .||+||.+||.++| ++|.||+|
T Consensus 12 ~L~ed----l~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg---~dS~lg~a 82 (257)
T cd07620 12 LLTED----LVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD---AESSIRRV 82 (257)
T ss_pred hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC---CcchHHHH
Confidence 45663 45666666666544 44566666554432111 2467888 89999999999999 78999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHH-------
Q 018756 112 AAIYGDAR-KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVS------- 175 (351)
Q Consensus 112 ~~~~g~a~-~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~------- 175 (351)
| ++|.++ ++|++++++++.+|+++|++||+.+++.|+.++ +|+|||||.|-|..-.+......
T Consensus 83 L-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~ 161 (257)
T cd07620 83 L-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEV 161 (257)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccc
Confidence 9 999999 999999999999999999999999999999987 99999999995442110000000
Q ss_pred ------HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhhhhHhHHHHHHHHHHHHHHHHH
Q 018756 176 ------KRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIA 248 (351)
Q Consensus 176 ------rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e~qqq~lt~~~L~~lveae~~yh~~~~ 248 (351)
...+|+ .-..++++.|+.||+++|.. +.+.|..+ ..+.+. +++|+.||+++.+||+++.
T Consensus 162 ~~~~~~~~~~K~-----~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~--a~~l~~lveaQ~~YHrqsl 227 (257)
T cd07620 162 GEHQGIRRANKG-----EPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY--ANYFIRLLELQAEYHKNSL 227 (257)
T ss_pred cccccccccccc-----cccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 001121 01248999999999999998 77788763 444444 7899999999999999999
Q ss_pred HHHHHhHHHhhhhh
Q 018756 249 AILGDVEAEMVSEK 262 (351)
Q Consensus 249 ~IL~~L~~~l~se~ 262 (351)
+||+.+.+++...-
T Consensus 228 ~~Le~~l~~~~~~~ 241 (257)
T cd07620 228 EFLDKNITELKENH 241 (257)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 12
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.88 E-value=3.5e-21 Score=178.79 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=125.8
Q ss_pred cchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh------
Q 018756 79 YKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------ 152 (351)
Q Consensus 79 ~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------ 152 (351)
.+.++. .||+||..||.++| .+|.||.||+.||+|+++|+.+++.|...++++|++||+..+. +.+++
T Consensus 49 k~~p~~--~Lg~~M~~~g~~lg---~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKk 122 (215)
T cd07593 49 KCLPVE--ALGLVMINHGEEFP---QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKK 122 (215)
T ss_pred cCChHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344566 79999999999999 8999999999999999999999999999999999999998874 77764
Q ss_pred --hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhhhhh
Q 018756 153 --ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLT 229 (351)
Q Consensus 153 --~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~-qqq~lt 229 (351)
+||||||+.| -|..|.+... +...++|+.|++||++.++. +...|..|-+ +..+
T Consensus 123 Le~rRLdyD~~k-------------sk~~kak~~~-~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~-- 179 (215)
T cd07593 123 LESRRLAYDAAL-------------TKSQKAKKED-SRLEEELRRAKAKYEESSED-------VEARMVAIKESEADQ-- 179 (215)
T ss_pred HHHHHHHHHHHH-------------HHHHhccccc-hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--
Confidence 9999999988 3333332211 22238999999999999998 8888887633 4444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018756 230 FQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (351)
Q Consensus 230 ~~~L~~lveae~~yh~~~~~IL~~L~~~ 257 (351)
+.+|..||+|+++||++|.+||.+|...
T Consensus 180 ~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 207 (215)
T cd07593 180 YRDLTDLLDAELDYHQQSLDVLREVRQS 207 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998875
No 13
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.88 E-value=4e-21 Score=181.46 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=144.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhHHH-----------hhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHH
Q 018756 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVF-----------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 115 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~-----------~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~ 115 (351)
.++||+---+||.+-+ +|++.++++ +..+| +|. .||+||.+||.++| .+|.||.||..|
T Consensus 17 ~~~le~r~D~~k~~~~---~i~k~~~~~lqpnp~~r~ek~~kk~--p~~--~Lgq~M~e~~~~lg---~~s~~g~aL~~~ 86 (246)
T cd07618 17 LLQIERRLDTVRSVSH---NVHKRLIACFQGQVGTDAEKRHKKL--PLT--ALAQNMQEGSAQLG---EESLIGKMLDTC 86 (246)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHcCCChHHHHHHHhccC--CHH--HHHHHHHHHHhcCC---CCccHHHHHHHH
Confidence 4678888777776543 344444444 23456 477 79999999999999 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC---
Q 018756 116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA--- 184 (351)
Q Consensus 116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~--- 184 (351)
|+++++|++++.+++..++++|++||++++.++++++ +||||+||.| +|..+...+
T Consensus 87 gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K-------------~r~~~a~~~~~~ 153 (246)
T cd07618 87 GDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSAR-------------GRYNQAHKSSGT 153 (246)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHH-------------HHHHhccccCcc
Confidence 9999999999999999999999999999999998765 8999999999 343332110
Q ss_pred ------C-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 185 ------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 185 ------~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
. .+-+.++++.|+.||++++.. +...|.. +....+. +++|+.||+++++||+++.+||+.+..
T Consensus 154 ~~~~~~~K~~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~--~~~l~~lv~aQ~eYHr~a~e~Le~~~p 224 (246)
T cd07618 154 NFQAMPSKIDMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY--AKFFVLLLEAQADYHRKALAVIEKVLP 224 (246)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122235789999999999998 4445554 3333343 789999999999999999999999999
Q ss_pred Hhhhhh
Q 018756 257 EMVSEK 262 (351)
Q Consensus 257 ~l~se~ 262 (351)
++....
T Consensus 225 ~i~~~~ 230 (246)
T cd07618 225 EIQAHQ 230 (246)
T ss_pred HHHHHH
Confidence 987653
No 14
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.85 E-value=1.3e-19 Score=171.26 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=132.8
Q ss_pred chhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh-------
Q 018756 80 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------- 152 (351)
Q Consensus 80 ~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------- 152 (351)
+-++. .||.+|..||.++| .+|+||.||..||+|++.|+.++.+++..+.++|++||+.++.++++++
T Consensus 56 k~p~~--~Lg~~M~~~g~~l~---~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkL 130 (244)
T cd07595 56 KLPEY--GLAQSMLESSKELP---DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRL 130 (244)
T ss_pred cCcHH--HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 79999999999999 7899999999999999999999999999999999999999999998875
Q ss_pred -hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC-------C-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-H
Q 018756 153 -ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA-------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-E 222 (351)
Q Consensus 153 -~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~-------~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v-e 222 (351)
.||||||+.| +|..|.+.+ . .+...++++.|+.||+++++. +...|..+ +
T Consensus 131 e~~RLd~D~~k-------------~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~ 190 (244)
T cd07595 131 SKLVLDMDSAR-------------SRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLA 190 (244)
T ss_pred hhhhHHHHHHH-------------HHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 8999999999 555443311 1 233347999999999999998 88888875 3
Q ss_pred HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 018756 223 AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEK 262 (351)
Q Consensus 223 ~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~ 262 (351)
...+. ++.|..||+++++||+++.++|+.+...+....
T Consensus 191 ~E~e~--~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~ 228 (244)
T cd07595 191 KEAEI--ASYLIDLIEAQREYHRTALSVLEAVLPELQEQI 228 (244)
T ss_pred ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32444 789999999999999999999999999987543
No 15
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.82 E-value=2.1e-19 Score=169.68 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcc--ceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhh-hhhhh
Q 018756 13 EQVAKQQQAVIKQFSASGYERSDV--MVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEA-GTKLS 89 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~-~~~l~ 89 (351)
+.|=+-=+.|-+.|..-||--.-+ =.+.+---.-+.+..-|=..| +....|.-++- ..++.+++=. -.-||
T Consensus 11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs 84 (242)
T cd07600 11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALS 84 (242)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHH
Confidence 455555678889999777731111 112232222355555554444 44556665532 2222223221 22599
Q ss_pred HHHhhhhccCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhh
Q 018756 90 EDCCRYGAENNQN--INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQR 159 (351)
Q Consensus 90 e~~~kyg~e~~~~--~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~d 159 (351)
.+|..+|.++|.+ .++++||.||+.||+|+.+|++.|..+|..++++|++||++++.++++++ +||||||
T Consensus 85 ~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D 164 (242)
T cd07600 85 RAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLD 164 (242)
T ss_pred HHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999921 22889999999999999999999999999999999999999999999874 9999999
Q ss_pred hHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHH
Q 018756 160 YSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVE 238 (351)
Q Consensus 160 y~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lve 238 (351)
+.| .|..|.+... ..+...++++||.+|.+.++. +...|..+-+.-.. ++.|..||+
T Consensus 165 ~~K-------------~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~ 222 (242)
T cd07600 165 TAR-------------AELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVK 222 (242)
T ss_pred HHH-------------HHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHH
Confidence 999 4554442111 233347889999999999987 77777766443333 789999999
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 018756 239 GEKNYHLRIAAILGDVEAE 257 (351)
Q Consensus 239 ae~~yh~~~~~IL~~L~~~ 257 (351)
|++.||++|+++|.+|...
T Consensus 223 AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 223 AQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998753
No 16
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=99.72 E-value=5e-16 Score=146.06 Aligned_cols=279 Identities=18% Similarity=0.217 Sum_probs=184.8
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcC-cchhh----------------hhhhhhHHHhhhhccCCCCCCCCchhH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIG-YKHIE----------------AGTKLSEDCCRYGAENNQNINENILPK 110 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~-~~q~E----------------~~~~l~e~~~kyg~e~~~~~~~~~~~~ 110 (351)
-++|+|..-.-..|..-+.|.+..|++..+- .--+| -+..|+..|.--|.|+| .+.+.|.
T Consensus 37 aHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG---ptTpYG~ 113 (375)
T KOG3725|consen 37 AHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG---PTTPYGS 113 (375)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC---CCCcchH
Confidence 3488998877778889999999999986542 11111 12358999999999999 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhhHhhhhHHHHHHHHH-HHHHHhh
Q 018756 111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEV-SKRQQRV 181 (351)
Q Consensus 111 a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~rlrqe~E~~~~e~-~rrq~k~ 181 (351)
||+.+|++.+++...--.|...-..|||-|||++..||.+-+ .+|||-|--|-|-.- +.++|. ..|-.|.
T Consensus 114 aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLKK-AKaae~q~~rN~~~ 192 (375)
T KOG3725|consen 114 ALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLKK-AKAAELQTVRNSKT 192 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHHH-hhhhhhhccccccc
Confidence 999999999999999999999999999999999999998754 667776644422211 111111 0111111
Q ss_pred hcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756 182 REAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 182 re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s 260 (351)
.-+- +.....+|+.|.+.|+.--+. ..| +-......-+. + +..|..||+++.+|+.+|.+.+-+|+.++..
T Consensus 193 s~~~~ie~aEqelRvaQ~EFDrQaEi-TrL---LLEGIsstH~n--h--LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~ 264 (375)
T KOG3725|consen 193 SGGFTIEQAEQELRVAQAEFDRQAEI-TRL---LLEGISSTHNN--H--LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG 264 (375)
T ss_pred cCcchHhHHHHHHHHHHHHHhHHHHH-HHH---HHHhhhhhhhh--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 011123444444444332221 111 11111111111 1 6678999999999999999999999998765
Q ss_pred hhhccC-----CCCCCCCCCC----------------CCccc---------cceEEEEecCCCCCCCCCccccCCCEEEE
Q 018756 261 EKQRKE-----SAPPVIPSEN----------------SSQKA---------VYFLAEAIHPFTAASEKELSLGVGDYVVV 310 (351)
Q Consensus 261 e~~r~e-----sa~~~~~~~s----------------~~~~~---------~~~~~~ALydf~a~~~~ELsf~~GD~I~V 310 (351)
-..... .++.|.|+.. ..+|. ....++++|||++..+.||++-..++|.|
T Consensus 265 fps~~~s~~~~~s~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitV 344 (375)
T KOG3725|consen 265 FPSFRGSSAILVSNSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITV 344 (375)
T ss_pred CcccccccccccCCCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEE
Confidence 321111 1111111110 00111 13368999999999999999999999998
Q ss_pred eee--CCCCeeEEEECCeeeEecCCceeec
Q 018756 311 RKV--SPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 311 l~~--~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
.+. .|.+|..|+.+++.|-+|..|++.+
T Consensus 345 yslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 345 YSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred EecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 764 4778999999999999999999754
No 17
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.2e-15 Score=148.18 Aligned_cols=199 Identities=19% Similarity=0.273 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhh
Q 018756 9 SKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAG 85 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~ 85 (351)
.-+...+.+-++-|+-.||-| |-.+ ||. +. |...++...-..++++||| |..+|.|++....+-.|.+
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~-----~~Tk-D~~-FE--~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l 74 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKV-----DETK-DEQ-FE--QEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESL 74 (460)
T ss_pred hhhHHHhccccHHHHhhcCCc-----cccc-chH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999821 2222 432 22 2244555556789999999 9999999998876666554
Q ss_pred hhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhh
Q 018756 86 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQR 159 (351)
Q Consensus 86 ~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~d 159 (351)
..+ |+.+|. |..-. -..+..++..|.+|+..|.+++++||..+...+| +.++|+|. |
T Consensus 75 ~ei------y~p~~~----g~~~l------~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~-D 137 (460)
T KOG3771|consen 75 QEI------YEPDWP----GRDYL------QAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLV-D 137 (460)
T ss_pred HHh------cCcccc----cHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhh-h
Confidence 333 888887 44322 2345678889999999999999999999998887 35799999 9
Q ss_pred hHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH--hHHHHHH
Q 018756 160 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMV 237 (351)
Q Consensus 160 y~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~--~~L~~lv 237 (351)
||++||.++...... + + . ..|+..||+.|+..+..+..|+.++...|+.+.+ .|+.+ ..+.+++
T Consensus 138 yD~~r~~~~kvq~~k-----~-k----d--~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~--sRv~f~vp~Fqsl~ 203 (460)
T KOG3771|consen 138 YDSARHSFEKLQAKK-----K-K----D--EAKLAKAEEELEKAQQVFEELNNELLEELPALYS--SRVGFFVPTFQSLF 203 (460)
T ss_pred hHHHHHHHHHHHHhc-----C-C----C--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchHHHHH
Confidence 999999998776652 1 1 1 3678889999999999999999999999999988 56553 5677788
Q ss_pred HHHHHHHHHH
Q 018756 238 EGEKNYHLRI 247 (351)
Q Consensus 238 eae~~yh~~~ 247 (351)
..+..||+..
T Consensus 204 ~~q~vf~~Em 213 (460)
T KOG3771|consen 204 NLQLVFHKEM 213 (460)
T ss_pred HHHHHHHHHH
Confidence 8899998877
No 18
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.52 E-value=4.1e-12 Score=111.01 Aligned_cols=187 Identities=20% Similarity=0.316 Sum_probs=149.8
Q ss_pred hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 018756 61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDP 140 (351)
Q Consensus 61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~P 140 (351)
++.=+.|++.+++++..+.........|+++|.++|...+ ...+.+++.++..+|++.+.++..++.+...+...|++|
T Consensus 6 ~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~p 84 (194)
T cd07307 6 EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP-DLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEP 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666789999999999987 222224999999999999999999999999999999999
Q ss_pred HHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018756 141 LRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 220 (351)
Q Consensus 141 L~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ 220 (351)
|+.+..++.... +..-.+|++.|.++++....+.+-+.+.+ ...++..++.++++.+..+..+..++...|..
T Consensus 85 L~~~~~~~~~~~-~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~ 157 (194)
T cd07307 85 LKEYLKKDLKEI-KKRRKKLDKARLDYDAAREKLKKLRKKKK------DSSKLAEAEEELQEAKEKYEELREELIEDLNK 157 (194)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998776644 66666888888888888877754433321 13688889999999999988888889999998
Q ss_pred HHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 221 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 221 ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
+...........|..|++++..||.++.++++++.
T Consensus 158 ~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 158 LEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 87755555578899999999999999999988764
No 19
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.51 E-value=6.7e-12 Score=113.33 Aligned_cols=223 Identities=18% Similarity=0.317 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHh---HHHhhcCcchhhhhhhh
Q 018756 12 KEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVA---EVFTAIGYKHIEAGTKL 88 (351)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~---~~~~~~~~~q~E~~~~l 88 (351)
.-.+.|-.|.|.-.+|++ +...+|+.=-....++..+.. .-+++++++-+-+ +.+..++.-.......|
T Consensus 2 ~K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (229)
T PF03114_consen 2 KKKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEE---SIKKLQKSLKKYLDSIKKLSASQKNMKSPFEEL 73 (229)
T ss_dssp HHHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHH
Confidence 345677778888888833 233357642223344444433 4456666644433 34444332111222379
Q ss_pred hHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHH
Q 018756 89 SEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAE 168 (351)
Q Consensus 89 ~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E 168 (351)
|++|..+|.+.+ .++.||.++..||+++..|+..+..+...+.+.|++||+.+. ...++...... .+++.+.+++
T Consensus 74 ~~~l~~~~~~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~k-kr~~~~ldyd 148 (229)
T PF03114_consen 74 ADALIELGSEFS---DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIK-KREKKRLDYD 148 (229)
T ss_dssp HHHHHHHHHCTS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHH
Confidence 999999999987 566799999999999999999999999999999999999999 66655432222 3344444555
Q ss_pred HHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHH
Q 018756 169 TQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRI 247 (351)
Q Consensus 169 ~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~ 247 (351)
.....+++ .++.. .+....+++.|+.+|+.+... +...|+.+......+....|..|++++..||+++
T Consensus 149 ~~~~k~~k----~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~ 217 (229)
T PF03114_consen 149 SARSKLEK----LRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQL 217 (229)
T ss_dssp HHHHHHHH----CHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 22111 121135677777777766665 6677777655333333378999999999999999
Q ss_pred HHHHHHhHHHh
Q 018756 248 AAILGDVEAEM 258 (351)
Q Consensus 248 ~~IL~~L~~~l 258 (351)
.++|.+|...+
T Consensus 218 ~~~l~~l~~~l 228 (229)
T PF03114_consen 218 YQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 20
>smart00721 BAR BAR domain.
Probab=99.49 E-value=7.4e-12 Score=115.56 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhh-chhhhhHHHHHHh------HHHhhcCcchhhhhh
Q 018756 14 QVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTR-GTKDFQRDLVKVA------EVFTAIGYKHIEAGT 86 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~vr~~------~~~~~~~~~q~E~~~ 86 (351)
++.|--|.|.-.+|++ +-..+||.= ..||+-+..++ ..++++|++-..+ ++...+...-.+
T Consensus 5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f----~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~--- 72 (239)
T smart00721 5 QFNRAKQKVGEKVGKA-----EKTKLDEDF----EELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSK--- 72 (239)
T ss_pred hhHHHHHHHHHHhCCC-----CcCcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHH---
Confidence 4556666788888833 344446653 23444444433 2345555543333 333333222223
Q ss_pred hhhHHHhh--hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhh
Q 018756 87 KLSEDCCR--YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHL 156 (351)
Q Consensus 87 ~l~e~~~k--yg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L 156 (351)
.+++.+.- +|.+.+ .++.+|.++..+|+++..++..+..| ..+..+|+.|+.+....+..+. .++|
T Consensus 73 ~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~l 148 (239)
T smart00721 73 SLGEVYEGGDDGEGLG---ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLL 148 (239)
T ss_pred HHHHHhcCCCCccccC---chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHH
Confidence 35555554 455555 67789999999999999999999999 9999999999999998887653 3344
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHH
Q 018756 157 AQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAM 236 (351)
Q Consensus 157 ~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~l 236 (351)
|||+.|+.++..... .+ .+.. .||..|+++|+..++.+..++.++...|+.+.+....+-+..|..|
T Consensus 149 --DyD~~~~kl~~~~~~-----~~-----~~~~-~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~ 215 (239)
T smart00721 149 --DYDSARHKLKKAKKS-----KE-----KKKD-EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQAL 215 (239)
T ss_pred --HHHHHHHHHHHHHHh-----cc-----CChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 455555555433211 11 1211 2777778888877777777777899999987663333336789999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHh
Q 018756 237 VEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 237 veae~~yh~~~~~IL~~L~~~l 258 (351)
+.++..||.++..+|.+|...+
T Consensus 216 ~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 216 IEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 21
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.47 E-value=7.7e-14 Score=100.82 Aligned_cols=49 Identities=37% Similarity=0.626 Sum_probs=45.3
Q ss_pred EecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCcee
Q 018756 288 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 336 (351)
Q Consensus 288 ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe 336 (351)
|+|+|.+..++||+|++||+|.|+...++|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999999999999999999999999996
No 22
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.44 E-value=2e-11 Score=113.46 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=141.1
Q ss_pred chhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018756 59 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS 135 (351)
Q Consensus 59 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~ 135 (351)
+++.+||| |..+|.|+..++..-.|....| |+..|. |. -++..++..++..|.+|...+.+
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l------Y~p~~~----~~------~~~~~v~e~~d~~~~~l~~~l~~ 90 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL------YEPDWP----GR------EHLASIFEQLDLLWNDLEEKLSD 90 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc----cH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998 8999999998888877776666 888875 21 14466788999999999999999
Q ss_pred hhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018756 136 QVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI 209 (351)
Q Consensus 136 ~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~ 209 (351)
.|++||..++.-.|- +++|+|. |||+.|+.++.....-. + + ..||.+||++|+..+..+..
T Consensus 91 ~Vl~Pl~~~~s~f~~i~k~I~KR~~Kll-DYDr~r~~~~kL~~K~~------k-----d-e~KL~kae~el~~Ak~~Ye~ 157 (211)
T cd07588 91 QVLGPLTAYQSQFPEVKKRIAKRGRKLV-DYDSARHNLEALKAKKK------V-----D-DQKLTKAEEELQQAKKVYEE 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH-hHHHHHHHHHHHHhccc------c-----c-HhhHHHHHHHHHHHHHHHHH
Confidence 999999999988763 5699999 99999999888755411 1 2 47999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 210 LGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 210 l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
++.++...|+.+.+-.-..-..-+.+|+.++..||.++..+..+|...|.
T Consensus 158 lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~ 207 (211)
T cd07588 158 LNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD 207 (211)
T ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998877322222356888999999999999999999887664
No 23
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.40 E-value=3.4e-11 Score=111.72 Aligned_cols=178 Identities=13% Similarity=0.198 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756 45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 121 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~ 121 (351)
.+.+.|| .+++.+||| |..+|.|+......-.|.+..+ ||..|+ ..+.+ ......
T Consensus 19 ~rf~~le------~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~------Y~~~~~---~~~~~-------~~v~e~ 76 (211)
T cd07612 19 MNLNMQQ------SDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI------YEPDWD---GHEDL-------GAIVEG 76 (211)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcC---cccHH-------HHHHhc
Confidence 4555555 368999999 9999999999888877776665 999998 23333 445566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756 122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 195 (351)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~ 195 (351)
++..|++++..+.+.||+||..++.-+|- +++|+|. |||+.|+.++..... +.++ ..||..
T Consensus 77 ~d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~Kll-DYD~~R~~~~kl~~k------~~kD------~~KL~k 143 (211)
T cd07612 77 EDLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLV-DYDSARHHLEALQNA------KKKD------DAKIAK 143 (211)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhc------cccc------HHHHHH
Confidence 77899999999999999999999988873 5799999 999999998777642 1111 479999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
||+.|+..+..+..++.++...|+.+.+ .|+. ...+.+++..+..||.++..+...|..-|.
T Consensus 144 Ae~el~~Ak~~ye~lN~~L~~ELP~L~~--~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~ 207 (211)
T cd07612 144 AEEEFNRAQVVFEDINRELREELPILYD--SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 5554 367889999999999999999888877653
No 24
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.34 E-value=2.1e-12 Score=94.97 Aligned_cols=54 Identities=39% Similarity=0.672 Sum_probs=48.6
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEe-eeCCCCeeEEEECCeeeEecCCceeec
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl-~~~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
.|+|++||.+..+++|+|.+||+|.|+ ...++|||.|+.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999999 888889999999999999999999864
No 25
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=99.34 E-value=1.6e-10 Score=107.31 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756 45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 121 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~ 121 (351)
.+.+.||+ +++.+||| |..+|.|+.+....-.|.+..+ ||..|+ . .+.. ...| ..
T Consensus 19 rrf~~lE~------~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~------Y~p~~~-g--~~~~----~~~~---~~ 76 (211)
T cd07611 19 QNFKRQET------EGTRLQRELRAYLAAIKGMQEASKKLTESLHEV------YEPDWY-G--RDDV----KTIG---EK 76 (211)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc-c--cchH----HHHH---hh
Confidence 45566664 67899999 9999999999988888887777 999984 1 1211 1223 55
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756 122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 195 (351)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~ 195 (351)
+..+|.+|+..+..++++|+..++.-+|- +++|.|. |||+.|+.++.+... +.+ | ..||..
T Consensus 77 ~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKll-DYD~~r~~~~kL~~k------~~k-----D-e~KL~k 143 (211)
T cd07611 77 CDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLV-DYDSARHHLEALQTS------KRK-----D-EGRIAK 143 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhcc------ccc-----c-HHHHHH
Confidence 66799999999999999999999988773 5699999 999999998777643 121 2 589999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
||+-|+..+..+..++..+...|+.+.+ .|+. ...+.+|+..+..||.++..+-..|..-|.
T Consensus 144 Ae~el~~Ak~~ye~lN~~Lk~ELP~L~~--~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 144 AEEEFQKAQKVFEEFNVDLQEELPSLWS--RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 5544 367889999999999999998777776553
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.2e-10 Score=116.38 Aligned_cols=60 Identities=38% Similarity=0.711 Sum_probs=53.6
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEee--eCCCCeeEEEECCeeeEecCCceeeccCCC
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKRQRIP 342 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~--~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p 342 (351)
...|+|+|.|++.+.+|++|.+||+|.|.. ...+||..|+.+|+.||||.|||+.+...+
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e 754 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVE 754 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCC
Confidence 557999999999999999999999999874 458899999999999999999999875443
No 27
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.25 E-value=9.7e-10 Score=103.16 Aligned_cols=185 Identities=18% Similarity=0.284 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 018756 45 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 121 (351)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~ 121 (351)
++.+.||+ +++.+||| |+.+|.|+..+..|-.|. |+++ |+.+. +..+..+.-.|-.++..
T Consensus 18 ~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~---l~~~---~~~~~-----~~~~~~~~e~y~~~~~~ 80 (225)
T cd07590 18 QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQD---LASG---PLCED-----NDELRNLVEALDSVTTQ 80 (225)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhc---ccCCC-----ChHHHHHHHHHHHHHHH
Confidence 45555554 57899999 888888888777555555 4442 54332 23466677788899999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 018756 122 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 195 (351)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~ 195 (351)
|.+....++..+...|++||..+..-+|. +++|.|. |||+.|+.++..... .+.+ + +..||.+
T Consensus 81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~-DYD~~r~~~~kl~~K-------~~k~--~-~~~KL~k 149 (225)
T cd07590 81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQ-EYERLQAKVEKLAEK-------EKTG--P-NLAKLEQ 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhC-------ccCC--h-hHHHHHH
Confidence 99999999999999999999999998875 5689997 999999998766532 1111 1 1389999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 196 Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
||+.|+..+..+..++.++..-|+.+.+ -|++ ..-+.+|+-.+..||.....++.+|...+-
T Consensus 150 ae~el~~Ak~~ye~~N~~L~~ELP~l~~--~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 150 AEKALAAARADFEKQNIKLLEELPKFYN--GRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998877 3333 356788999999999999999999988664
No 28
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=99.21 E-value=5.5e-12 Score=127.36 Aligned_cols=56 Identities=36% Similarity=0.734 Sum_probs=53.2
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
..++|-|.|.+.+.+||+|.+||+|+|+...+.|||+|+++|++||||+|||.++.
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999998864
No 29
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.12 E-value=1.5e-10 Score=82.88 Aligned_cols=55 Identities=38% Similarity=0.563 Sum_probs=50.5
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC-CeeeEecCCceeec
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEKR 338 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~-Gk~G~FPsnYVe~i 338 (351)
..++|+|+|.+..+++|+|.+||.|.|+...++|||.+++. |+.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 45789999999999999999999999998888999999986 99999999999753
No 30
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=99.09 E-value=4.1e-11 Score=118.65 Aligned_cols=57 Identities=33% Similarity=0.445 Sum_probs=53.4
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
...++|||||++..++||+|+.||+|+|+...+++||.|++.+..|+||+|||....
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 346899999999999999999999999999999999999999999999999998754
No 31
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-10 Score=109.61 Aligned_cols=98 Identities=29% Similarity=0.444 Sum_probs=70.4
Q ss_pred HHHHHHHHhHHHhhhhhhccCCCCCC--CCCCCC-Cccc----cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCe
Q 018756 246 RIAAILGDVEAEMVSEKQRKESAPPV--IPSENS-SQKA----VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGW 318 (351)
Q Consensus 246 ~~~~IL~~L~~~l~se~~r~esa~~~--~~~~s~-~~~~----~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gW 318 (351)
.-..|...|.+.+...-.|..+++.. +|.... .+|. ....+.+-|.|.++.++||++.+|+.|.|.++..+||
T Consensus 63 ~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGW 142 (379)
T KOG4226|consen 63 KKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGW 142 (379)
T ss_pred hhhHHHHhhhhccccccccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcc
Confidence 34567788887776633333333322 111111 1111 1123788899999999999999999999999999999
Q ss_pred eEEEECCeeeEecCCceeeccCCCC
Q 018756 319 SEGECKGKAGWFPSANVEKRQRIPV 343 (351)
Q Consensus 319 weG~~~Gk~G~FPsnYVe~i~~~p~ 343 (351)
|.|..+|..||||+|||++....+.
T Consensus 143 WrG~~ng~VGWFPSNYv~E~~ds~~ 167 (379)
T KOG4226|consen 143 WRGSYNGQVGWFPSNYVTEEVDSAA 167 (379)
T ss_pred eecccCCeeccccccceehhccccc
Confidence 9999999999999999998766543
No 32
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.08 E-value=1.9e-10 Score=82.22 Aligned_cols=46 Identities=39% Similarity=0.666 Sum_probs=42.2
Q ss_pred EEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEEC--CeeeEecC
Q 018756 287 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPS 332 (351)
Q Consensus 287 ~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~--Gk~G~FPs 332 (351)
+|+|+|.+..++||+|.+||.|.|++..+.+||.|... |+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999999999999973 79999995
No 33
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.05 E-value=4.1e-10 Score=79.74 Aligned_cols=51 Identities=41% Similarity=0.624 Sum_probs=47.5
Q ss_pred EEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECC-eeeEecCCcee
Q 018756 286 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-KAGWFPSANVE 336 (351)
Q Consensus 286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~G-k~G~FPsnYVe 336 (351)
++++|+|.+..+++|+|.+||.|.|++..++|||.+...+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999998889999999865 99999999986
No 34
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.1e-10 Score=122.74 Aligned_cols=54 Identities=35% Similarity=0.563 Sum_probs=51.1
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
.+.++|||.+++++||+|++||+|.|+.+.++.||.|+++|++|+||+|||...
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 467999999999999999999999999999999999999999999999999654
No 35
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.02 E-value=4.2e-08 Score=91.63 Aligned_cols=184 Identities=16% Similarity=0.226 Sum_probs=130.3
Q ss_pred HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
+++++.+++.+|.-.++.-..+++...+.|.... ..++...|.++..|+.+.+.|++.++.|-.++...++.||.++..
T Consensus 21 l~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k 99 (215)
T cd07604 21 LKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLK 99 (215)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888889999999998764 223335899999999999999999999999999999999999999
Q ss_pred cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--Cc-----chHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018756 147 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NP-----ENVAKLHAAEARMQELKANMAILGKEAAAAL 218 (351)
Q Consensus 147 ~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~-----~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am 218 (351)
+|+...-+-+...|||-+.++|.....+++...+ .++.. .+ +..+.|..+...|+...= +-...+
T Consensus 100 ~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~-------~yv~~l 172 (215)
T cd07604 100 GDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMC-------EYLIKV 172 (215)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 9886543367778889888887776655443222 11110 11 223444444444443321 223334
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 219 AAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 219 ~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
+.++.....=-++.|+.+++|+.+|+++..++++++.+-+
T Consensus 173 ~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 173 NEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4454432222268899999999999999999999987644
No 36
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.01 E-value=2.7e-10 Score=119.46 Aligned_cols=54 Identities=33% Similarity=0.603 Sum_probs=52.1
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceee
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 337 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~ 337 (351)
+.|.|+|||.+++.+||+|++||+|.++...+.|||.|..+|+.||||.+||++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 679999999999999999999999999999999999999999999999999975
No 37
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.99 E-value=5.3e-10 Score=111.91 Aligned_cols=56 Identities=36% Similarity=0.587 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~ 340 (351)
.++|+|+|.++...||.|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 48999999999999999999999999999999999999999999999999999887
No 38
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.91 E-value=2.2e-09 Score=110.56 Aligned_cols=60 Identities=40% Similarity=0.600 Sum_probs=51.7
Q ss_pred cccceEEEEecCCCCCCCCCccccCCCEEEEeeeC--CCCeeEEEECCeeeEecCCceeecc
Q 018756 280 KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 280 ~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~--d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
+.....+++-|||-+.+-.||||+.||+|.++... +.|||.|+.+|+.||||++||++-.
T Consensus 802 ~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 802 PKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred cceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 33455688889999999999999999999998654 4699999999999999999998743
No 39
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.89 E-value=2.8e-07 Score=85.24 Aligned_cols=179 Identities=12% Similarity=0.183 Sum_probs=130.2
Q ss_pred HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
.+|+.+.+++.+|.-..-.-..++..+..+|.+.. ++...|.++..|+.+++.|++.+..|..++..-+++||..++
T Consensus 20 kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~---~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~ 96 (200)
T cd07639 20 KLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP---KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLV 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666677777888888543 666799999999999999999999999999999999999999
Q ss_pred hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756 146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ 225 (351)
Q Consensus 146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq 225 (351)
..|+.. .+-....|||...++++-...-.+ ..|.+ + .+++.|.+-|.-.++..-...=+....++.++..-
T Consensus 97 k~dl~~-vKe~kK~FdK~s~~~d~al~K~~~-~~k~k----~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kK 167 (200)
T cd07639 97 KEDLRG-FRDARKEFERGAESLEAALQHNAE-TPRRK----A---QEVEEAAAALLGARATFRDRALDYALQINVIEDKK 167 (200)
T ss_pred HhhhHH-HHHHhhhHhhcchhHHHHHHHHhh-ccccc----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988864 466777888988888765444322 11211 2 47788888888888875444333444444444411
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 226 HRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 226 q~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
.---+..|+++++|..+|+.+..+++++|.+
T Consensus 168 kfefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 168 KFDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111578999999999999999999999864
No 40
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.87 E-value=2.5e-07 Score=85.73 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=134.2
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCch----hHHHHHHHHHHHHH
Q 018756 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL----PKAAAIYGDARKHV 122 (351)
Q Consensus 47 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~----~~a~~~~g~a~~~~ 122 (351)
...|+|||.+.++--.-++++..+.. .++..+..||.. + +|... |.++..|+.+++.|
T Consensus 14 ~~~~~Kl~K~~~~~~~a~~~~~~a~~--------------~Fa~~L~~f~~~-~---dD~~~~a~gg~~l~kF~~~l~ei 75 (202)
T cd07606 14 RDRSLKLYKGCRKYRDALGEAYDGDS--------------AFAESLEEFGGG-H---DDPISVAVGGPVMTKFTSALREI 75 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhcCC-C---CChHHHhccchHHHHHHHHHHHH
Confidence 35677887777665555555554444 445556666642 3 44333 24799999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 018756 123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE 202 (351)
Q Consensus 123 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~e 202 (351)
...++.|...+..-+++||..++..|+.+. +-+...|||-+.++++-.....+-..+.| + .+++.|++.+.-
T Consensus 76 ~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~yd~al~K~~~l~k~~k----~---~~~~ea~~~l~~ 147 (202)
T cd07606 76 GSYKEVLRSQVEHMLNDRLAQFADTDLQEV-KDARRRFDKASLDYEQARSKFLSLTKDAK----P---EILAAAEEDLGT 147 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCc----h---HHHHHHHHHHHH
Confidence 999999999999999999999999998874 67777899988888877666543222222 2 467788888888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 203 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 203 lk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
.++..-...-+...+++.++..-.---+..|+.+++|+.+|+++..+++.+|.
T Consensus 148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~ 200 (202)
T cd07606 148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88887666666666666665522112267899999999999999999998875
No 41
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.86 E-value=3.7e-07 Score=84.42 Aligned_cols=180 Identities=9% Similarity=0.164 Sum_probs=135.8
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 144 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~ 144 (351)
+.+|+++.+++.+|.-....-..++.....+|.+.. ++...+.++..||.+++.|...+..|...+...+++||+++
T Consensus 19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~---~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F 95 (200)
T cd07603 19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR---DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNF 95 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888887777777788888888888743 67788999999999999999999999999999999999999
Q ss_pred hhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 018756 145 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ 224 (351)
Q Consensus 145 ~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~q 224 (351)
+.+|+... +-+...|||...++++-..... ...|.| | ..++.|..-+...+.......-+....++.++..
T Consensus 96 ~k~dL~~v-KE~kk~Fdk~s~~yd~al~k~~-~~~K~K----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k 166 (200)
T cd07603 96 VKEDIKKV-KESKKHFEKISDDLDNALVKNA-QAPRSK----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK 166 (200)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHh-ccCCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998754 5566677777777765554421 112222 2 4777788888888888655555555555555542
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 225 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 225 qq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
-.---++.|+++++|+.+|+.+..++++++.+
T Consensus 167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~p 198 (200)
T cd07603 167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLEP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 22122688999999999999999999988753
No 42
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.85 E-value=2.6e-07 Score=91.29 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=49.1
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEEC-CeeeEecCCceeec
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR 338 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~-Gk~G~FPsnYVe~i 338 (351)
..++|||||.+...+||+|+.||.|..+... .-||+.|+++ |+.|+||+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 4689999999999999999999999887554 4599999986 99999999999865
No 43
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.83 E-value=6.2e-07 Score=84.20 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=127.2
Q ss_pred hchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 018756 58 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVE-KEQEDFNRLL 133 (351)
Q Consensus 58 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~-~~~~~l~~~~ 133 (351)
.+++.+||+ +..++.++..+...-.|....+ |+..++ .+ .-.+.-.|..++..|. +....++..+
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~l------Y~p~~~---~~--~~~~~~~y~~~v~~l~~~~~~el~~~~ 93 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISSF------YGDAGD---KD--GAMLSQEYKQAVEELDAETVKELDGPY 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCC---cc--HhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467889998 5566666655554444443333 888886 21 1123345666666665 4566677778
Q ss_pred HhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756 134 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 134 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
.+.|++|+..+..-.| ++++++|. |||+.|+.++..... +.+ + ..||..||++|++.+..+
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~Kll-DYD~~~~k~~kl~~K------~~k-----d-~~kL~kae~el~~a~~~Y 160 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLL-DYDAARAKVRKLIDK------PSE-----D-PTKLPRAEKELDEAKEVY 160 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHh-hHHHHHHHHHHHHhc------ccC-----C-HHHHHHHHHHHHHHHHHH
Confidence 9999999999987665 36789998 999999998865532 111 1 378999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
..++..+..-|+.+-+-.-.+...-+.+|+..+..||.+....|..+....
T Consensus 161 e~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~ 211 (224)
T cd07591 161 ETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYL 211 (224)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999876633333345677899999999999988888876644
No 44
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.82 E-value=8.6e-10 Score=110.38 Aligned_cols=59 Identities=27% Similarity=0.482 Sum_probs=55.0
Q ss_pred cceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756 282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340 (351)
Q Consensus 282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~ 340 (351)
....|.+.|.|.+++++||.|+.||+|.|+....+|||.|.++|+.|+||+|||..+..
T Consensus 99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence 34579999999999999999999999999999999999999999999999999998754
No 45
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.80 E-value=2.5e-09 Score=107.11 Aligned_cols=56 Identities=32% Similarity=0.523 Sum_probs=51.1
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeee--CCCCeeEEEECCeeeEecCCceeecc
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~--~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
.+|+++|.|++++++||+|++||+|.++.+ ++-|||+|+++|+.|.||-|||+.++
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 469999999999999999999999987754 36699999999999999999999876
No 46
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=98.77 E-value=9.8e-07 Score=81.94 Aligned_cols=188 Identities=11% Similarity=0.128 Sum_probs=128.4
Q ss_pred hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018756 61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV 137 (351)
Q Consensus 61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~ 137 (351)
+.|=++||+.+.+++.+|.--.=+...++.+...+|.+... .+++. ..+.++..|+..++.|++.+..|-.++...+
T Consensus 15 ~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l 94 (207)
T cd07634 15 NKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777665555555677777777754320 01221 5899999999999999999999999999999
Q ss_pred hhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756 138 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA 217 (351)
Q Consensus 138 ~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~a 217 (351)
+.||..+...|+.. .+-....|||-...+++....-.. ..+.+ .+ ..++.|++-|+-.++..-...=+....
T Consensus 95 ~~pL~~f~k~dl~~-vKe~kK~FDK~se~y~~aleK~l~-l~~~k----k~--~~~~ea~~~l~~~R~~F~~~~ldYv~~ 166 (207)
T cd07634 95 IAPLEKFRKEQIGA-AKDGKKKFDKESEKYYSILEKHLN-LSAKK----KE--SHLQRADTQIDREHQNFYEASLEYVFK 166 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHccchhHHHhHHHHHHHHHHh-ccccC----Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 456667888887777664433211 11111 11 477778888888887743332233333
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 218 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 218 m~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
++.|+....---++.|+++++|..+|+.+..++++++.+
T Consensus 167 i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p 205 (207)
T cd07634 167 IQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 334443111111578999999999999999999998753
No 47
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.69 E-value=2.6e-06 Score=79.25 Aligned_cols=183 Identities=12% Similarity=0.182 Sum_probs=124.7
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL 141 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~-~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL 141 (351)
+.+|+...+++.+|.-..=+-..++++..-|+-+-.. .++| -..+.+|-.||.++..|++.++-|...+...++.||
T Consensus 19 kkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL 98 (207)
T cd07602 19 KELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPL 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444556666666644210 0122 247899999999999999999999999999999999
Q ss_pred HHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756 142 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 221 (351)
Q Consensus 142 ~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v 221 (351)
..+...|+.+ .+-....|||-..++++-.....+ ..|.|. + ..++.|++-+.-.++..-...-+...+++.|
T Consensus 99 ~~F~k~dl~~-~ke~kk~FdK~se~~~~al~k~~~-lsk~kk----~--~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~v 170 (207)
T cd07602 99 EKFRKEQIGG-AKEEKKKFDKETEKFCSSLEKHLN-LSTKKK----E--NQLQEADAQLDMERRNFHQASLEYVFKLQEV 170 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-cCCCCC----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999977754 466667888887777666655422 112221 2 4777788888887777654444455555555
Q ss_pred HHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 222 EAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 222 e~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
+.. .+.. +..|+++++|.++|+.+..+++.++.+
T Consensus 171 q~r-Kkfefle~ll~~m~a~~tff~qG~el~~d~~p 205 (207)
T cd07602 171 QER-KKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP 205 (207)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 542 1222 567899999999999999999988753
No 48
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=98.68 E-value=1.9e-09 Score=111.55 Aligned_cols=83 Identities=34% Similarity=0.497 Sum_probs=69.2
Q ss_pred hhhhhhccCCCCCCCCCCC----CCccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEec
Q 018756 258 MVSEKQRKESAPPVIPSEN----SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFP 331 (351)
Q Consensus 258 l~se~~r~esa~~~~~~~s----~~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FP 331 (351)
.+++++||.++.+|.+... .....+++++.+...|.+..++||++..+|++.|+.+.++||++|+. +|..||||
T Consensus 579 s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP 658 (695)
T KOG3523|consen 579 SQSDRQRWISALRPPSSTKPPEKIYEEWDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFP 658 (695)
T ss_pred chHHHHHHHHhcCCCCCCCChhhhhhccCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcch
Confidence 4567889998876533222 12455788899999999999999999999999999999999999995 89999999
Q ss_pred CCceeeccC
Q 018756 332 SANVEKRQR 340 (351)
Q Consensus 332 snYVe~i~~ 340 (351)
..||+.|..
T Consensus 659 ~~~veeI~~ 667 (695)
T KOG3523|consen 659 SSYVEEITN 667 (695)
T ss_pred HHHHHHhcC
Confidence 999998754
No 49
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.67 E-value=3.4e-06 Score=78.02 Aligned_cols=183 Identities=9% Similarity=0.202 Sum_probs=128.7
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
.+|+||...-++--..=|.++.+.++ ++.....++.+. ..|...+.+|-.||++++.|...+.
T Consensus 16 ~~l~kl~K~~~~~~d~g~~~~~a~~~--------------F~~~l~d~~~~~---~gd~~i~~~L~kF~~~l~ei~~~~~ 78 (200)
T cd07637 16 AKLDKLVKLCSGMIEAGKAYATTNKL--------------FVSGIRDLSQQC---KKDEMISECLDKFGDSLQEMVNYHM 78 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 57888776554433333334443333 344444444442 3567789999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
.|...+..-+++||+.++..|+.+. +-+...||+...++++-..... +.+.++ | ..++.|...+.+.+...
T Consensus 79 ~l~~q~e~~l~~pL~~F~k~dL~~~-KE~rK~Fdk~se~yd~al~k~~--~~k~kk---~---~~l~Ea~~~L~~~Rk~f 149 (200)
T cd07637 79 ILFDQAQRSVRQQLHSFVKEDVRKF-KETKKQFDKVREDLEIALVKNA--QAPRHK---P---HEVEEATSTLTITRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHh--hcCCCC---h---HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 4555577787777766555532 233222 2 47788888888888887
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
....-+....++.++..-.---+..|+++++|+.+|+.+..+++++|.+
T Consensus 150 ~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p 198 (200)
T cd07637 150 RHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 6655556666665555211111578999999999999999999998764
No 50
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=98.65 E-value=1.6e-06 Score=84.31 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=102.4
Q ss_pred hhHHHhhhh---ccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhh
Q 018756 88 LSEDCCRYG---AENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRM 163 (351)
Q Consensus 88 l~e~~~kyg---~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rl 163 (351)
|+..+.... .++.. ..+.++|+.||..|+.++..|++.|-.+|..+.++|..||++....+.... .++-.+.+..
T Consensus 126 LSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a-~k~RkkV~~s 204 (289)
T PF10455_consen 126 LSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKA-NKARKKVENS 204 (289)
T ss_pred HHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 555555555 34410 224578999999999999999999999999999999999999888666543 2222222222
Q ss_pred hhHHHHHHHHHHHHHHhhhcCC-C-cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Q 018756 164 RQEAETQAVEVSKRQQRVREAP-N-PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEK 241 (351)
Q Consensus 164 rqe~E~~~~e~~rrq~k~re~~-~-~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~ 241 (351)
|-++...+.++ |.+..+ + ...-.+|+.||..|-..-+. |..-|..|-+.-.- +..|..|+.|++
T Consensus 205 RL~~D~~R~~~-----k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~AQl 270 (289)
T PF10455_consen 205 RLQFDAARANL-----KNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVKAQL 270 (289)
T ss_pred HHHHHHHHHHh-----cccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHHHHH
Confidence 22322222222 221111 1 11223566777766655554 77778776442222 577888999999
Q ss_pred HHHHHHHHHHHHhHHHh
Q 018756 242 NYHLRIAAILGDVEAEM 258 (351)
Q Consensus 242 ~yh~~~~~IL~~L~~~l 258 (351)
.||+.++++|..+-..+
T Consensus 271 ~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 271 EYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 51
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.59 E-value=2.8e-08 Score=99.72 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=50.8
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEE--EECCeeeEecCCceee
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK 337 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG--~~~Gk~G~FPsnYVe~ 337 (351)
..++|+|.|.+++++||.|..||+|.|++++|+||+.| +++|+.|.||-|||+.
T Consensus 433 l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 433 LKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred ccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 34799999999999999999999999999999999999 5799999999999974
No 52
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.57 E-value=9.7e-06 Score=75.53 Aligned_cols=182 Identities=12% Similarity=0.184 Sum_probs=117.8
Q ss_pred HhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 018756 70 VAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP 149 (351)
Q Consensus 70 ~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~ 149 (351)
.|+++..+|.-+++.-.-+++.+.+.|.--- |.++...|.+++.||.+.+.|.+..+.|..++..-+.-||.+++.+|+
T Consensus 24 ~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dL 102 (215)
T cd07642 24 SVKAIHTSGLAHVENEEQYTQALEKFGSNCV-CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455556666666555566666666666311 235678999999999999999999999999999999999999999888
Q ss_pred hhhhh-hhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHH
Q 018756 150 LEDAR-HLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALA---AIE 222 (351)
Q Consensus 150 ~e~~R-~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~---~ve 222 (351)
+.. | -+...|||.|.++|+-....++-..+ .|... .++.. - ..|.+-+...+. .+..++..... .+.
T Consensus 103 r~v-K~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~-~-~E~ae~l~~~R~---~fq~~a~dYv~~in~lk 176 (215)
T cd07642 103 KGV-KGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEIS-G-AEIAEEMEKERR---FFQLQMCEYLLKVNEIK 176 (215)
T ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccc-h-hhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 654 3 46667889999999877643321111 11110 11100 0 112222222222 23333444333 333
Q ss_pred HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 223 AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 223 ~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
..+..=-+++++.+..|+.+|+++..+.+++|.+-+
T Consensus 177 ~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 177 IKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222368899999999999999999999998754
No 53
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.55 E-value=1.4e-05 Score=74.79 Aligned_cols=186 Identities=12% Similarity=0.194 Sum_probs=122.3
Q ss_pred HHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc-CCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 49 QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE-NNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 49 ~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e-~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
.++||+.--++--+-++++..+... ++....-|+.. .++|++|...+.++..|+.+++.|+..+.
T Consensus 17 ~~~kL~K~c~~~~~a~~~~~~A~~~--------------F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~ 82 (215)
T cd07601 17 YMNQLLQACKRVYDAQNELKSATQA--------------LSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHS 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444444444444444 44444445432 11134676777899999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHH
Q 018756 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL-HAAEARMQELKAN 206 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL-~~Ae~Kl~elk~~ 206 (351)
.|...+..-++.||..++..|+.+. +-+...|||-..++++-.....+= .|.|+ . +++ ..|++-+...++.
T Consensus 83 ~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~~d~al~K~~~l-~k~k~----~--~~~~~Ea~~~l~~~R~~ 154 (215)
T cd07601 83 TLSSQLADTVLHPISQFMESDLAEI-MTLKELFKAASNDHDGVLSKYSRL-SKKRE----N--TKVKIEVNDEVYACRKK 154 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhHHHHHHHHHHhhC-CcCCC----c--hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764 677778899888888766655321 11111 1 122 3466666666665
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 018756 207 MAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILG-DVEAE 257 (351)
Q Consensus 207 m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~-~L~~~ 257 (351)
.-...-+...+++.++.. .+.. +..|+++++|+.+|+.+..+++. ++.+=
T Consensus 155 F~~~~ldYv~~ln~iq~k-Kk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf 206 (215)
T cd07601 155 QHQTAMNYYCALNLLQYK-KTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEF 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433444445545441 1111 57899999999999999999997 76653
No 54
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.53 E-value=1.5e-05 Score=74.08 Aligned_cols=186 Identities=12% Similarity=0.195 Sum_probs=132.2
Q ss_pred hhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018756 61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV 137 (351)
Q Consensus 61 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~ 137 (351)
+++=+.||+...+++.+|.-..=.-..++.+..-|+-+-.. .++|. ..+.++-.|+.+++.|++.+.-|......-+
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l 94 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888776666666788888888754210 11222 2678999999999999999999999999999
Q ss_pred hhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756 138 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA 217 (351)
Q Consensus 138 ~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~a 217 (351)
+.||..+...++.. .+--...|||-..++++-......=..|.|+ .+++.|++-|...++..-...=+....
T Consensus 95 ~~~L~~F~kedi~~-~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~-------~~~eEA~~~L~~~r~~F~~~sLdYV~q 166 (207)
T cd07636 95 ITPLEKFRKEQIGA-AKEAKKKYDKETEKYCAVLEKHLNLSSKKKE-------SQLHEADSQVDLVRQHFYEVSLEYVFK 166 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHHHHHHHhcCcccCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877753 4555567888777776655543221112222 488889999999988864443333333
Q ss_pred HHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 218 LAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 218 m~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
++.|++. .+.. +..|+++++|.++|+.+..+++.++.
T Consensus 167 i~~vq~r-Kkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 167 VQEVQER-KMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3344431 1111 57799999999999999999998875
No 55
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.50 E-value=2e-05 Score=73.36 Aligned_cols=182 Identities=12% Similarity=0.183 Sum_probs=121.4
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC--CCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NIN-ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL 141 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~--~~~-~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL 141 (351)
+.+|+...+++.+|.--.=+...++.+..-++-+-.. .++ ....|..+.+|+.++..+++.++-|..++...++.||
T Consensus 19 ~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL 98 (207)
T cd07635 19 KELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPL 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433333444444444422100 112 2234789999999999999999999999999999999
Q ss_pred HHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018756 142 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 221 (351)
Q Consensus 142 ~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~v 221 (351)
..+...|+.+ .+-....|||-.+++++-.....+=..+.|+ .+++.|.+-+.-.++..-...-+-...++.|
T Consensus 99 ~~F~kedl~~-~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~-------~e~~EA~~~l~~~r~~F~~~sLdYv~qin~l 170 (207)
T cd07635 99 ERFRKEQLGA-VKEEKKKFDKETEKNYSLLEKHLNLSAKKKE-------PQLQEADVQVEQNRQHFYELSLEYVCKLQEI 170 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhccCCCCc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988865 4777778999888887777665443334333 2566788888777776544433344444444
Q ss_pred HHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 222 EAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 222 e~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
+.. .+.. +..|+++++|+.+|+.+..+++.++.
T Consensus 171 Q~r-KKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 171 QER-KKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 431 1111 56799999999999999999998875
No 56
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=5.6e-08 Score=97.32 Aligned_cols=55 Identities=36% Similarity=0.537 Sum_probs=52.1
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
.++++|||.+..++||+|.+|-+|.|+++.++|||+|.++|.+|+||-|||+.+.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 4789999999999999999999999999999999999999999999999998763
No 57
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.47 E-value=2.3e-05 Score=72.55 Aligned_cols=182 Identities=9% Similarity=0.218 Sum_probs=131.8
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
..|+||+..-+.--+.+++++.+.+.|+. +.+-+ .+||+ ++...|.++-.|+.++..|++.+.
T Consensus 16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-------~l~d~----~~~~~------~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-------GIRDL----AQYSS------KDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHH----HHhCC------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 57899998888888888888877777653 21112 23443 355788999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
-|...+..-+++||..++..|+.+ .+-....|||...+++.-...-.+ ..|.|+ .+++.|..-+...++..
T Consensus 79 ~L~~q~~~~l~~~L~~F~k~dl~~-vke~kk~FdK~s~~~~~aL~K~~~-~~k~k~-------~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 79 ILFDQAQRSIKAQLQTFVKEDLRK-FKDAKKQFDKVSEEKENALVKNAQ-VQRNKQ-------HEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHhcc-CCcCch-------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988865 466667888877666444433221 112221 46677777888777776
Q ss_pred HHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018756 208 AILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA 256 (351)
Q Consensus 208 ~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~IL~~L~~ 256 (351)
-...-+...+++.++.. .+.. +..|+++++|+.+|+.+..+++.++.+
T Consensus 150 ~~~~ldYv~~ln~vq~k-Kkfe~le~ll~~m~a~~tff~qG~el~~d~~p 198 (200)
T cd07638 150 RHIALDYVLQINVLQSK-RRSEILKSMLSFMYAHLTFFHQGYDLFSELGP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 55555555556555552 1222 577999999999999999999998764
No 58
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.46 E-value=6.9e-08 Score=102.72 Aligned_cols=59 Identities=27% Similarity=0.497 Sum_probs=53.9
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCe-eeEecCCceeeccCC
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI 341 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk-~G~FPsnYVe~i~~~ 341 (351)
...|+|||||.+..++||+|-+|-+|.++++.+.|||.|..+|+ .+|||+|||++|.+.
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 45799999999999999999999999999998899999999865 699999999998763
No 59
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.41 E-value=2.1e-07 Score=88.98 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=55.2
Q ss_pred cceEEEEecCCCCCCCCCccccCCCEEEEee--eCCCCeeEEEE-CCeeeEecCCceeeccCCCCC
Q 018756 282 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS 344 (351)
Q Consensus 282 ~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~--~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~s 344 (351)
....+.|||+|.+.++.||+|.+||.+.|+. ..|++||.++. .|..|++|.|||+++..-|.+
T Consensus 190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence 3456889999999999999999999999985 45789999995 899999999999999887644
No 60
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=3.2e-07 Score=94.18 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhHHHhhhhhhccCCCCCCCCCCCCCccccceEEEEecCCCCCCCCCccccCCCEEEEeeeC---CCCeeE
Q 018756 244 HLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSE 320 (351)
Q Consensus 244 h~~~~~IL~~L~~~l~se~~r~esa~~~~~~~s~~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~---d~gWwe 320 (351)
+-+|.+.|-..+..|. .+....+.|+|||+++.++||+|.+||.++|++.. +.+||+
T Consensus 664 Y~~CsqyL~~vqesmG--------------------~mN~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWw 723 (752)
T KOG0515|consen 664 YDQCSQYLYGVQESMG--------------------SMNKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWW 723 (752)
T ss_pred HHHHHHHHHHHHHhhc--------------------ccccceeEEeecccccccccccccCCceeEEEecCCcchhhhhh
Confidence 3567777777666543 11234578999999999999999999999999764 348999
Q ss_pred EEECCeeeEecCCceeeccCC
Q 018756 321 GECKGKAGWFPSANVEKRQRI 341 (351)
Q Consensus 321 G~~~Gk~G~FPsnYVe~i~~~ 341 (351)
++.+|+.||||.||+-....+
T Consensus 724 a~lng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 724 ARLNGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred HhhcCcccccchhhhhcCccc
Confidence 999999999999998765443
No 61
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=98.31 E-value=1.8e-07 Score=94.85 Aligned_cols=55 Identities=29% Similarity=0.478 Sum_probs=51.5
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 338 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i 338 (351)
.+++|+|||++-++.|++|..+|.|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 4689999999999999999999999999999999999996 899999999999865
No 62
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=98.30 E-value=5.5e-07 Score=82.95 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=50.9
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR 338 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i 338 (351)
..++|+|||.+++++|.+|.-||.|.-+..+++||..|.+ +|.+|..|+||++-+
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 4579999999999999999999999999999999999986 899999999999853
No 63
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.28 E-value=0.00019 Score=66.50 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC
Q 018756 111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 184 (351)
Q Consensus 111 a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~ 184 (351)
....|..+++.|...-......+...|++|+..+..-.+ ++++++|. |||++++.++....+ |. +-
T Consensus 72 ~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~l-Dyd~~~~k~~k~~~~------k~-~~ 143 (216)
T cd07599 72 RLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKL-DYDKLQNKLNKLLQK------KK-EL 143 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhc------CC-CC
Confidence 344677777777654444455888999999999987554 35688998 999999998772221 21 10
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018756 185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG 252 (351)
Q Consensus 185 ~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~ 252 (351)
+ +....+|..|+.+|++.+..+..++..+..-|+.+-+-...+--.-+.+|+--++.|+......+.
T Consensus 144 ~-~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~ 210 (216)
T cd07599 144 S-LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQ 210 (216)
T ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111378888999999999999999999999888765522222122344466667777665555443
No 64
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.24 E-value=0.00032 Score=65.49 Aligned_cols=179 Identities=13% Similarity=0.173 Sum_probs=120.6
Q ss_pred HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
+.+.+.+++.-....-..+..||..+.-||.. ++..|++||..++++...|.+.++.-...+-..|++||..+..
T Consensus 23 l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~-----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~ 97 (211)
T cd07598 23 LCQDFAAYTRKTARLRDKGDELAKSINAYADT-----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGT 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444556788888999985 3456999999999999999999999999999999999998876
Q ss_pred cChh-hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756 147 GAPL-EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ 225 (351)
Q Consensus 147 ~~~~-e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq 225 (351)
--+- .+.++.. +.+..+......+..|.|..+.++ ..+|.+||.++...+.-.....+....-|..+|.
T Consensus 98 l~k~~k~~~K~~-------~~ar~~~~~~~~~leklk~~~~~d-~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~-- 167 (211)
T cd07598 98 ICKHARDDLKNT-------FTARNKELKQLKQLEKLRQKNPSD-RQIISQAESELQKASVDANRSTKELEEQMDNFEK-- 167 (211)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3321 1222221 111111111113334444332233 4566678888888888777777777777877776
Q ss_pred hhhh-H-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756 226 HRLT-F-QRLVAMVEGEKNYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 226 q~lt-~-~~L~~lveae~~yh~~~~~IL~~L~~~l~s 260 (351)
+++. + +-|..||..+..||.++.++...+...+.+
T Consensus 168 ~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~ 204 (211)
T cd07598 168 QKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322 3 357789999999999999998887776543
No 65
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.23 E-value=8.7e-05 Score=68.21 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=101.1
Q ss_pred hchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018756 58 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV-EKEQEDFNRLL 133 (351)
Q Consensus 58 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~-~~~~~~l~~~~ 133 (351)
.+.+.++|| |.++|.+.. .-+.+. ....|-=|+..++ .+ . .+...|..++..+ ...+.++...+
T Consensus 19 ~~~~~l~kd~k~Y~~~~~~~~---~~~~~~---~~~~~d~y~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~e~~~~i 86 (195)
T cd07589 19 KQVQLVVRNVELYLQHVQESV---LVKVLA---LEVVLDLYPSNHP---RL--E-SKWERFRRVVRGISSKALPEFKSRV 86 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhccCCCh---hh--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999 777787776 233333 2222333776665 21 2 2344555555554 44889999999
Q ss_pred HhhhhhHHHHhhhcCh------hhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 018756 134 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 134 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
...|++|+..+..-.+ +++.++|- ||||.++.++. ..| ++ .++..|.+.|+.+++.
T Consensus 87 ~~~V~~Pl~~~~~~~~~~~k~I~KR~~Kll-DYdr~~~~~~k--------~~k------~e--~~l~~a~~~y~~lN~~- 148 (195)
T cd07589 87 RKLVIEPLSSLLKLFSGPQKLIQKRYDKLL-DYERYKEKKER--------GGK------VD--EELEEAANQYEALNAQ- 148 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-cHHHHHHHHHh--------hcc------hH--HHHHHHHHHHHHHHHH-
Confidence 9999999999976443 35677887 89987766433 011 22 5566666666666665
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756 208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL 251 (351)
Q Consensus 208 ~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL 251 (351)
+...|+.+-+-...+.-..+.+|+..|..||....+-+
T Consensus 149 ------L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 149 ------LKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred ------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667765543333334568889999999998776543
No 66
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.17 E-value=0.00037 Score=64.96 Aligned_cols=200 Identities=14% Similarity=0.198 Sum_probs=130.2
Q ss_pred eecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHH
Q 018756 38 VIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGD 117 (351)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~ 117 (351)
.++|+==.-+..|+|| ++-+.|++.+|.-+++.-.-+.+...+.|.-.- +.++...|.|++.|+.
T Consensus 6 ~~ee~l~~~e~~L~Kl--------------~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~-~~dd~~i~~a~~kfs~ 70 (215)
T cd07641 6 VLEEALDQDRTALQKV--------------KKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL-SRDNPDLGTAFVKFST 70 (215)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHH
Confidence 3455444455666664 666777788888777777777777888887752 2367789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhh-hhhhhhHhhhhHHHHHHHHHHHHHHh-hhcCC--CcchHHHH
Q 018756 118 ARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-HLAQRYSRMRQEAETQAVEVSKRQQR-VREAP--NPENVAKL 193 (351)
Q Consensus 118 a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R-~L~~dy~rlrqe~E~~~~e~~rrq~k-~re~~--~~~~~~kL 193 (351)
.++.|....-.|-.++..-|.-||.+++-+|++.. | -+...++|...++|+-....++.... .|+.. .++ +.-.
T Consensus 71 ~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~-K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e-~~~~ 148 (215)
T cd07641 71 LTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGV-KGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTE-ITGA 148 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhcc-ccch
Confidence 99999999999999999999999999999888655 3 55556777777777776654322111 12210 111 0001
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 194 HAAEARMQELKANMAILGKEAAAALAAI---EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 194 ~~Ae~Kl~elk~~m~~l~kea~~am~~v---e~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
.|.+-|...+..+ ...+...+..+ +....---++.|+.+.+|+.+|+++..+.+++|.+=+
T Consensus 149 -Eaa~~l~~~Rr~F---q~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~ 212 (215)
T cd07641 149 -EIAEEMEKERRLF---QLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI 212 (215)
T ss_pred -hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333333331 11123333222 2211111168899999999999999999999987644
No 67
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.17 E-value=0.00049 Score=64.15 Aligned_cols=194 Identities=15% Similarity=0.214 Sum_probs=124.0
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
--||+|.. +|+. |.+++.+++.++.--.+++.++|+.+..=. ..-.+|.+|..+.+.++.|+..+.
T Consensus 10 P~~e~lv~---~~~k----Y~~al~~~~~a~~~f~dal~ki~~~A~~s~-------~s~~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 10 PAWENLVS---LGKK----YQKALRAMSQAAAAFFDALQKIGDMASNSR-------GSKELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 3444 556778888888777778777777655311 123699999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHH
Q 018756 128 DFNRLLSSQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 204 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~~~~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk 204 (351)
.+...+-..||-||..-+..+.+.. =++....|++.+.+.+....+.. |..|.......+....++.+ ++.+.
T Consensus 76 ~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~-Kl~KK~~kgk~~~~~~~~~~---~~~v~ 151 (219)
T PF08397_consen 76 EVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELK-KLRKKSRKGKDDQKYELKEA---LQDVT 151 (219)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCTSCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCCCccccHHHHHH---HHHHH
Confidence 9999999999999999999888754 23334455555555555544442 22222111122323344444 33333
Q ss_pred HHHHHhhHHHHHHHHH-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018756 205 ANMAILGKEAAAALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (351)
Q Consensus 205 ~~m~~l~kea~~am~~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~L~~~l~ 259 (351)
..-..|..-...++-. +-+...|.+ +..++.+++.+..||.++..+|...-+...
T Consensus 152 ~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 152 ERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333334444433 333456666 588999999999999998887776555443
No 68
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.15 E-value=1e-06 Score=81.45 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=51.9
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
..+..++|||.+..+++|.|.+||.|.|+...++.||.|.+.|+.|+||++||...
T Consensus 163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 34578999999999999999999999999999999999999999999999998653
No 69
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1.5e-06 Score=84.29 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=49.1
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeC-----CCCeeEEEE--CCeeeEecCCceeeccCCC
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGEC--KGKAGWFPSANVEKRQRIP 342 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-----d~gWweG~~--~Gk~G~FPsnYVe~i~~~p 342 (351)
..|+|+|||.+.++.||+|++||.+.|..+. +..||.... +|..||||.|||+.+..-|
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~ 334 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP 334 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence 4689999999999999999999999988543 335777764 5778999999999987633
No 70
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.05 E-value=1.3e-06 Score=81.68 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=54.0
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCCC
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRIP 342 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p 342 (351)
...++++|||.++...+|.|++|+++.|+.+.++.||..+. .|+.|++|.+||+...+..
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhh
Confidence 34578899999999999999999999999999999999995 8999999999999876554
No 71
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.03 E-value=0.0008 Score=62.50 Aligned_cols=177 Identities=11% Similarity=0.125 Sum_probs=110.1
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI------LPKAAAIYGDARKHVEKEQEDFNRLLSSQVL 138 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~------~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~ 138 (351)
++||+-..++|.+|....=+...++.++.-++-+-. .+.. .+.+|-.||..+..|++.+.-|.......++
T Consensus 19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i---gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~ 95 (207)
T cd07633 19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI---GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLI 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555555555555555555422 3333 7899999999999999999999999999999
Q ss_pred hHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018756 139 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAAL 218 (351)
Q Consensus 139 ~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am 218 (351)
.||++++--++.. .+--...|||.+.++++-...-..=..|. .+ .+++.|.+.|.-.+...-.. +-+..
T Consensus 96 ~~L~~F~Kedi~~-~Ke~KK~FdK~se~~~~aL~k~a~~s~k~-----K~--~e~eEA~~~L~~~r~~F~~~---aLdYV 164 (207)
T cd07633 96 KPLENFRKEQIGF-TKERKKKFEKDSEKFYSLLDRHVNLSSKK-----KE--SQLQEADLQVDKERQNFYES---SLEYV 164 (207)
T ss_pred HHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHhcccccC-----Cc--hHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 9999987644332 23333345554444433322211110121 22 57888888888887774222 22222
Q ss_pred HHHHH-Hhhh-h-hHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 219 AAIEA-QQHR-L-TFQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 219 ~~ve~-qqq~-l-t~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
..+.. |... . -|.-|++|+.+..+|+.+..+++.++.
T Consensus 165 ~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~ 204 (207)
T cd07633 165 YQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 22211 1111 1 156788999999999999999988864
No 72
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=98.00 E-value=0.0015 Score=60.46 Aligned_cols=185 Identities=14% Similarity=0.184 Sum_probs=123.8
Q ss_pred HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
+-+.|+++.+.|-.++|.-.-++|.+.+.|..-- +.++..+|-|.+.|+--.+.++-.--+|-.++..-+.=||.+++-
T Consensus 21 ~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l-~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK 99 (213)
T cd07640 21 IKKIVKAIHNSGLNHVENEEQYTEALENLGNSHL-SQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLK 99 (213)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHH
Confidence 3456778999999999999999999999999766 556688999999999999999988888888888889999999988
Q ss_pred cChhhhhh-hhhhhhHhhhhHHHHHHHHHHH-HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-H
Q 018756 147 GAPLEDAR-HLAQRYSRMRQEAETQAVEVSK-RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE-A 223 (351)
Q Consensus 147 ~~~~e~~R-~L~~dy~rlrqe~E~~~~e~~r-rq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve-~ 223 (351)
+|++.. | -+...++|...++|+-....++ +..+.|+..... -+...|.+-|...+..+ ...+...+..+. .
T Consensus 100 ~dlr~~-K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~--~e~eEaae~l~~eRr~F---ql~acdYllkin~i 173 (213)
T cd07640 100 GQLRDG-RLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIR--LDMTDTAEDMQRERRNF---QLHMCEYLLKAQES 173 (213)
T ss_pred HHhhhh-hHHHHhHHHHHHHHHHHHHHHHhccccccchhccccc--ccHHHHHHHHHHHHHHH---HHHHHHHHHHHhHH
Confidence 777644 3 4444555666666555544321 111111110000 02233444444444442 112333333221 1
Q ss_pred Hhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 018756 224 QQHR--LTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (351)
Q Consensus 224 qqq~--lt~~~L~~lveae~~yh~~~~~IL~~L~~~l 258 (351)
|..+ --++.|+.|.+|+.+|+++..+.+++|.+=+
T Consensus 174 q~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyi 210 (213)
T cd07640 174 QMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFI 210 (213)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 1111 1268899999999999999999999987643
No 73
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=3.2e-06 Score=84.60 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=49.2
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCC--CeeEEEECCeeeEecCCceee
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS--GWSEGECKGKAGWFPSANVEK 337 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~--gWweG~~~Gk~G~FPsnYVe~ 337 (351)
..+.++|+|..+.+++|+|.+||+|+++++.+. .||.|..+|..|+||.|||+.
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 368999999999999999999999999976544 799999999999999999964
No 74
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.89 E-value=2.5e-06 Score=83.91 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=59.3
Q ss_pred CccccceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccCCCC
Q 018756 278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV 343 (351)
Q Consensus 278 ~~~~~~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~p~ 343 (351)
+.++....+.+++||.+....||.|..||++.++...+.+||.|..+|.+||||..|+..+...|.
T Consensus 170 ~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 170 VLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred cchhhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 344455678999999999999999999999999999999999999999999999999999877776
No 75
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=97.86 E-value=0.005 Score=57.63 Aligned_cols=183 Identities=10% Similarity=0.160 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHH
Q 018756 44 MQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHV 122 (351)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~-~~~~~~~~~~~a~~~~g~a~~~~ 122 (351)
-|-||-+++.|-.|+ +.-- +-..++.-..-|-..+ .+..+|...+.+|-.|+.++..|
T Consensus 19 ~~~~~~~~~~~~a~~-------~ls~--------------a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El 77 (215)
T cd07631 19 NQLFQAMHRIYDAQN-------ELSA--------------ATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 77 (215)
T ss_pred HHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHH
Confidence 467999999998776 1111 1124666667777322 21245667899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHH-HHHHHHH
Q 018756 123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH-AAEARMQ 201 (351)
Q Consensus 123 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~-~Ae~Kl~ 201 (351)
++.+.-|...+..-++.||..+...|+.+ ++-+...|||-..+++.-.....+= .|.|. . ++++ .|.+-+.
T Consensus 78 ~~~~~~L~~q~~~sl~~pL~~F~kedL~~-~Ke~KK~FdK~Se~~d~Al~K~a~l-sk~K~----~--E~~~eea~~~v~ 149 (215)
T cd07631 78 SSCHAVLSTQLADAMMFPITQFKERDLKE-ILTLKEVFQIASNDHDAAINRYSRL-SKRRE----N--EKVKYEVTEDVY 149 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhcC-CCCCC----c--hHHHHHHHHHHH
Confidence 99999999999999999999999988865 5777788999888887766665422 12221 1 2221 1333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHHHHHHHH-HHHHhHH
Q 018756 202 ELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAA-ILGDVEA 256 (351)
Q Consensus 202 elk~~m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~yh~~~~~-IL~~L~~ 256 (351)
-.++..-..--+-...++.++.. .+.. +..|+++++|..+|+.+..+ +..++.+
T Consensus 150 ~tR~~F~~~aLdYv~qLn~lQ~r-KKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~ 205 (215)
T cd07631 150 TSRKKQHQTMMHYFCALNTLQYK-KKIALLEPLLGYMQAQISFFKMGSENLNEQLEE 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333222211222223333331 1111 57799999999999999999 4446554
No 76
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=97.81 E-value=0.0096 Score=56.34 Aligned_cols=216 Identities=18% Similarity=0.223 Sum_probs=134.3
Q ss_pred HHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhcc
Q 018756 19 QQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE 98 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e 98 (351)
.|.|.+.||.++- +-+|+=-.||. -+||.|=... .+=+.+++-++.++..=+.-...-+.||+.+.--|..
T Consensus 13 kq~~~e~~g~~~~---~~~it~D~eL~--~kle~l~~~~----~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~ 83 (229)
T PF06456_consen 13 KQMVSEKLGKKED---SRAITVDDELD--AKLELLRDTQ----RTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVR 83 (229)
T ss_dssp --------------------CHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCcccc---cchhhcchHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5689999985542 23443334443 2344332111 1223466666666666555555556899999999984
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHH
Q 018756 99 NNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQ 178 (351)
Q Consensus 99 ~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq 178 (351)
-. ...+|.+...+|++++.|++-+..|...+. -|+.-|+++.++++ +|.+.-...|+.-|-|+-+-+.+++.=.
T Consensus 84 e~----~~~l~~~f~~~~~~~~~~~~~~~~L~~~l~-~~~~~l~Tf~~kaI-~DT~~Tik~ye~aR~EY~ay~~~lke~~ 157 (229)
T PF06456_consen 84 EK----SPALGEEFSANGEAQRSLAKQGETLLKALK-RFLSDLNTFRNKAI-PDTLLTIKKYEDARFEYDAYRLWLKEMS 157 (229)
T ss_dssp -H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 235999999999999999999999998865 57778888888765 5667777788888888887777764332
Q ss_pred HhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756 179 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL 251 (351)
Q Consensus 179 ~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL 251 (351)
.+. .+ ..-...+.+.+...+.++|+.+..|-.++..-|.-+++..-++-..+|..|..+-..||..+.+.|
T Consensus 158 ~e~--~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 158 DEL--DPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL 229 (229)
T ss_dssp --T--STSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--CchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 121 12 222246888888888888888777777676667666664333334689999999999998877654
No 77
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.77 E-value=0.0065 Score=54.89 Aligned_cols=162 Identities=14% Similarity=0.227 Sum_probs=92.2
Q ss_pred hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC-----hhhhhhhhhhhhH
Q 018756 87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA-----PLEDARHLAQRYS 161 (351)
Q Consensus 87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~-----~~e~~R~L~~dy~ 161 (351)
.||.++..++..-. . .+..++.++..+|.++..+....+.+....-..|++||..+..-. .+..=.++-.+|+
T Consensus 43 elg~~~~~Ls~~e~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~ 120 (218)
T cd07596 43 EFGKALIKLAKCEE-E-VGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQ 120 (218)
T ss_pred HHHHHHHHHHhhcc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777776533 0 112599999999999999999999999999999999999988511 1111112223444
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCC--Ccc----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHH
Q 018756 162 RMRQEAETQAVEVSKRQQRVREAP--NPE----NVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLV 234 (351)
Q Consensus 162 rlrqe~E~~~~e~~rrq~k~re~~--~~~----~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~ 234 (351)
.+.+.+.......+ |.+..+ +++ ...+|..++..+..++..+..+...+...|...+.. ....+ .-|.
T Consensus 121 ~~~~~l~~k~~~~~----kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~-~~~dlk~~l~ 195 (218)
T cd07596 121 SLKKDLASKKAQLE----KLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEE-RARDLKAALK 195 (218)
T ss_pred HHHHHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44333333333222 221111 111 112333444444444444444444344333333221 11113 3467
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 018756 235 AMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 235 ~lveae~~yh~~~~~IL~~L~ 255 (351)
.|++.+..|++.+.++.+.+.
T Consensus 196 ~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 196 EFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999988877653
No 78
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=97.76 E-value=4.2e-06 Score=85.37 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=52.8
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
...++|+.||....++||.|+++|+|++++.-++..|.|+.+|-.||||+.||+.+.
T Consensus 548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999999998764
No 79
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.69 E-value=0.013 Score=54.12 Aligned_cols=161 Identities=15% Similarity=0.220 Sum_probs=94.8
Q ss_pred hhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhh
Q 018756 85 GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMR 164 (351)
Q Consensus 85 ~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlr 164 (351)
...||.++...|.--. +..++.++..+|++...+.+..+.+...--..|.+||+.+..-. ...|.+-.+=+++.
T Consensus 61 ~~e~~~~~~~la~~E~----~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~--~svk~~l~~R~~~~ 134 (236)
T PF09325_consen 61 LAEFGSSFSQLAKSEE----EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYI--ESVKEALNRRDKKL 134 (236)
T ss_pred HHHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3356666666665533 34699999999999999999999999999999999999876521 11111111111223
Q ss_pred hHHHHHHHHHHHHHHh---hhcCC-CcchHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhhhhH-hH
Q 018756 165 QEAETQAVEVSKRQQR---VREAP-NPENVAKLHAAEARMQELKANM-------AILGKEAAAALAAIEAQQHRLTF-QR 232 (351)
Q Consensus 165 qe~E~~~~e~~rrq~k---~re~~-~~~~~~kL~~Ae~Kl~elk~~m-------~~l~kea~~am~~ve~qqq~lt~-~~ 232 (351)
.+++....++.+++.. .+.++ ++ ..|+..|+..+.++...+ ..+.+.+...+...+.+ ....+ ..
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~--~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~-k~~d~k~~ 211 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNR--QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE-KVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444444444333 22221 12 145555555555555443 34433333333332221 11123 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018756 233 LVAMVEGEKNYHLRIAAILGDV 254 (351)
Q Consensus 233 L~~lveae~~yh~~~~~IL~~L 254 (351)
|..|++.+..|++++.++-+.+
T Consensus 212 l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 212 LEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 8889999999999998887665
No 80
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=97.61 E-value=0.018 Score=54.33 Aligned_cols=175 Identities=15% Similarity=0.243 Sum_probs=108.7
Q ss_pred HHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 018756 69 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA 148 (351)
Q Consensus 69 r~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~ 148 (351)
+++.+++.++.--.+...++||.-.. +. | --.+|.+|..+.+.++.++.-.+.+...+-..+|.||..=+..+
T Consensus 34 kal~a~~~a~~~~~dAl~kia~~A~~--s~-~----sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d 106 (223)
T cd07605 34 KALQALSQAAKVFFDALAKIGELASQ--SR-G----SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELD 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CC-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44555555555555555555544322 11 2 12588888888888899998888888899999999999888877
Q ss_pred hhhh---hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHH
Q 018756 149 PLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA-IEAQ 224 (351)
Q Consensus 149 ~~e~---~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~-ve~q 224 (351)
++.+ =.+-..+|++.|.+++.-..+..+=+-|.+.+..+....++.++.+-+..-...|..+ ...++-. +-..
T Consensus 107 ~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~---~~~~lr~al~EE 183 (223)
T cd07605 107 QKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAF---VSQGLRDALLEE 183 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 7754 2333447777777877777776543333332111222357776655444443333333 3344433 2223
Q ss_pred hhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756 225 QHRLT--FQRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 225 qq~lt--~~~L~~lveae~~yh~~~~~IL~~ 253 (351)
..|.+ +..++.+++.+..||......|..
T Consensus 184 RrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 184 RRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 588899999999999887776654
No 81
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=97.58 E-value=0.012 Score=54.96 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=104.9
Q ss_pred hhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756 88 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (351)
Q Consensus 88 l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe 166 (351)
|+.-.+-|...+-. |.+|...+.+|..|+.++..|++.+.-|...+..-++.||+.++..|+.+. +-+...|+|.+.+
T Consensus 42 ~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~v-Ke~KK~FdK~Se~ 120 (215)
T cd07632 42 LSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGIASNE 120 (215)
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence 45556678775432 456677899999999999999999999999999999999999999888774 7777889998888
Q ss_pred HHHHHHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHH
Q 018756 167 AETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNY 243 (351)
Q Consensus 167 ~E~~~~e~~rrq~k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~~~L~~lveae~~y 243 (351)
+++-.....+= .|.|++. .++++..|..+..+|.. ..-+-.-.++.++.. .+.- +.-|.+|+.|+.+|
T Consensus 121 ~d~AL~Knaql-skkK~~E~~eae~~~~l~~sRr~F~~-------~ALdYV~qiN~lQ~R-KKfeiLE~mLsym~Aq~TF 191 (215)
T cd07632 121 HDLSMAKYSRL-PKKRENEKVKAEVAKEVAYSRRKQHL-------SSLQYYCALNALQYR-KRVAMLEPMLGYTHGQINF 191 (215)
T ss_pred HHHHHHHHhhC-CcCCchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 87766665421 2222210 12222233333333332 111122223333321 1111 56788899999999
Q ss_pred HHHHHHHHHHhHH
Q 018756 244 HLRIAAILGDVEA 256 (351)
Q Consensus 244 h~~~~~IL~~L~~ 256 (351)
+.+..+++.+--+
T Consensus 192 FhQGyeL~~~~~~ 204 (215)
T cd07632 192 FKKGAELFSKKLD 204 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776433
No 82
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.39 E-value=0.00014 Score=75.86 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=60.1
Q ss_pred hhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhh-----hccCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018756 60 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRY-----GAENNQNINENI-LPKAAAIYGDARKHVEKEQEDFNRLL 133 (351)
Q Consensus 60 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~ky-----g~e~~~~~~~~~-~~~a~~~~g~a~~~~~~~~~~l~~~~ 133 (351)
++.|=|+|++--..+|+.-....-++.+++.....| |...+ +|.. .+..|-+||.-.++++++|--|..+-
T Consensus 32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~t---dde~~ia~slkefa~ll~~ve~er~~~v~~A 108 (812)
T KOG1451|consen 32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAET---DDEIFIATSLKEFASLLNQVEDERMRMVGNA 108 (812)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeecccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777666666666666666554 22222 3322 46777777887788888887777777
Q ss_pred HhhhhhHHHHh---hhcChhhhhhhhh
Q 018756 134 SSQVLDPLRAM---ITGAPLEDARHLA 157 (351)
Q Consensus 134 ~~~~~~PL~~~---~~~~~~e~~R~L~ 157 (351)
..-.|+||..+ +-|..+|.-.+-|
T Consensus 109 se~li~PlekFRkEqIG~~KE~KkKyd 135 (812)
T KOG1451|consen 109 SESLIEPLEKFRKEQIGTLKEEKKKYD 135 (812)
T ss_pred HHHHHhHHHHHHHHHhhhhHHHHhhhh
Confidence 77777777544 3445555433333
No 83
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.38 E-value=0.023 Score=52.41 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcC
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 184 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~ 184 (351)
.|+.|+-.+|.+..++...-..+...+..+|++||+.|+. ++++..-+ .=+..+.++|.....+.++..+.
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~----~R~~~q~~~e~~~e~L~~k~~~l--- 139 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLK----RRDQFQIEYELSVEELNKKRLEL--- 139 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5999999999999999999999999999999999999875 22222111 11123445566666666655543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 185 ~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~ 253 (351)
..++..|+.+|+..+..| ..-+...+. +.+..+ ..|..|++.+..|++++.+.-+.
T Consensus 140 -----~~ev~~a~~~~e~~~~~~-------~~E~~rF~~-~K~~d~k~~l~~~a~~qi~~~~~~~~~We~ 196 (200)
T cd07624 140 -----LKEVEKLQDKLECANADL-------KADLERWKQ-NKRQDLKKILLDMAEKQIQYYEQCLAAWEE 196 (200)
T ss_pred -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888887763 222222222 112223 46888999999999988765444
No 84
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.34 E-value=0.046 Score=51.69 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=95.3
Q ss_pred hhHHHhhhhccCCCCCCC-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhh----hH
Q 018756 88 LSEDCCRYGAENNQNINE-N-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR----YS 161 (351)
Q Consensus 88 l~e~~~kyg~e~~~~~~~-~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~d----y~ 161 (351)
..|++.|-|.--+ ++-| + .+|-+|..+..-++.|+.-...|...|-..+|.||+.-+.- -+...=.||.| |+
T Consensus 48 f~Da~qKvad~A~-~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~k 125 (231)
T cd07643 48 FLDAFQKIADAAT-NTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYK 125 (231)
T ss_pred HHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444444444333 2223 2 69999999999999999999999999999999999887662 22234445555 99
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh--HhHHHHHHHH
Q 018756 162 RMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEG 239 (351)
Q Consensus 162 rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt--~~~L~~lvea 239 (351)
|.|++.-....+.-|=|.|.|... .+.-..|.+|..-+..-...+.++.+.+... .+-.+..|.+ ++.|...++.
T Consensus 126 k~R~elKk~~~dt~klqkk~rKg~-~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~--aLiEER~Rfc~Fvs~l~pVl~~ 202 (231)
T cd07643 126 KARQEIKKKSSDTIRLQKKARKGK-GDLQPQLDSAMQDVNDKYLLLEETEKKAVRN--ALIEERGRFCTFVSFLKPVLDE 202 (231)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence 999998766666666555555432 2323566666554444444444444433221 1222334544 4777778887
Q ss_pred HHHHHH
Q 018756 240 EKNYHL 245 (351)
Q Consensus 240 e~~yh~ 245 (351)
|..-.-
T Consensus 203 e~~ml~ 208 (231)
T cd07643 203 EISMLG 208 (231)
T ss_pred HHHHHh
Confidence 776543
No 85
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=97.30 E-value=6.5e-05 Score=72.77 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=50.8
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
.|.++|+|.+..++||....||++.+-+...+|||.|++.|..|.||+.|+++.
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 589999999999999999999999888888999999999999999999999864
No 86
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=97.30 E-value=0.00056 Score=64.37 Aligned_cols=57 Identities=35% Similarity=0.431 Sum_probs=49.3
Q ss_pred eEEEEecCCCCCC--CCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeeccC
Q 018756 284 FLAEAIHPFTAAS--EKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 340 (351)
Q Consensus 284 ~~~~ALydf~a~~--~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~ 340 (351)
..++++.+-.|.. ...|.+.+||+|.|+...-+|-|+|+++|+.|.||..||+-...
T Consensus 228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~ 286 (293)
T KOG4792|consen 228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV 286 (293)
T ss_pred hheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence 4688888876653 45699999999999999999999999999999999999987654
No 87
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=9.8e-05 Score=74.88 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEee-eCCCCeeEEEE-CCeeeEecCCceeeccCCCCCc
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVSN 345 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~-~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~p~sk 345 (351)
.++++|||..++.+|+++..||++.+++ ....|||+|.. .|..|.||+.||+++....++.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sS 66 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASS 66 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchh
Confidence 4789999999999999999999999885 45779999995 8999999999999987554444
No 88
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=97.27 E-value=0.052 Score=50.90 Aligned_cols=186 Identities=13% Similarity=0.177 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756 46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~ 125 (351)
-+++|-+||.++-+--.-.|++.- ....+|.++..-|+--. ...|++|+..+|++...|...
T Consensus 24 Le~~Lk~l~~~~e~lv~~r~ela~--------------~~~~f~~s~~~L~~~E~----~~~Ls~al~~la~~~~ki~~~ 85 (224)
T cd07623 24 LDQQLRKLHASVESLVNHRKELAL--------------NTGSFAKSAAMLSNCEE----HTSLSRALSQLAEVEEKIEQL 85 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence 456677777665444444444433 33356777777776322 246999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHH---hhhcCCC----cchHHHHHHH
Q 018756 126 QEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ---RVREAPN----PENVAKLHAA 196 (351)
Q Consensus 126 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~---k~re~~~----~~~~~kL~~A 196 (351)
.+.....--..|.+||..++- ++.+ .+-.+-.+..+.++....++.+++. |...+.+ .+...+|..|
T Consensus 86 ~~~qa~~d~~~l~e~L~eY~r~i~svk----~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~ 161 (224)
T cd07623 86 HGEQADTDFYILAELLKDYIGLIGAIK----DVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 999888888999999998875 2222 2222222233333333333333222 2111111 2223455555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-hH-hHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 197 EARMQELKANMAILGKEAAAALAAIEAQQHRL-TF-QRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 197 e~Kl~elk~~m~~l~kea~~am~~ve~qqq~l-t~-~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
+.+.+..+..+..+..-....|..++. .|+ .+ ..|..|++.+..|..++.+.-+.+-
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~--erv~dfk~~l~~~le~~i~~q~~~~~~We~~~ 220 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEK--NRVKDFKDIIIKYLESLLNTQQQLIKYWEAFL 220 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666555555555555555555555443 221 12 4577788888888888777665543
No 89
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.26 E-value=0.00025 Score=75.27 Aligned_cols=57 Identities=26% Similarity=0.503 Sum_probs=47.6
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEEE-CCeeeEecCCceeeccCC
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGEC-KGKAGWFPSANVEKRQRI 341 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~~-~Gk~G~FPsnYVe~i~~~ 341 (351)
...+|||||.+..+..|++.+|+.+.|+--..+ .|++.+. +|+ ||+|+||+.++..+
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSL 149 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSL 149 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccch
Confidence 467999999999999999999999999965544 4888775 666 99999999876543
No 90
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=97.22 E-value=0.00024 Score=77.67 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=47.1
Q ss_pred EEEEecCCCCC--------CCCCccccCCCEEEEe-eeCCCCeeEEEECCeeeEecCCceeecc
Q 018756 285 LAEAIHPFTAA--------SEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 285 ~~~ALydf~a~--------~~~ELsf~~GD~I~Vl-~~~d~gWweG~~~Gk~G~FPsnYVe~i~ 339 (351)
..+|+|||++- .+.||.|++|++|.|+ .++.+|+|.|+++|+.|++|+|+|.++.
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 46899999863 2458999999999998 4556799999999999999999998764
No 91
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.01 E-value=0.33 Score=46.10 Aligned_cols=208 Identities=17% Similarity=0.197 Sum_probs=123.4
Q ss_pred HHHHHhcCCCCCCCccceecHHHHHHHHHHHHH-HhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC
Q 018756 21 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKL-YRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN 99 (351)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~ 99 (351)
-+||||. -.| | |=.||+...=|-|. |..++ ++...++.++..-.--.-...-+|.++.-.|...
T Consensus 5 k~lkq~~-~p~---d----~~~el~~~rp~vk~~y~~~~-------~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E 69 (230)
T cd07625 5 KTLKQFA-PPY---D----EYTELAEFRPLVKSIYLTAQ-------DLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE 69 (230)
T ss_pred HhhhccC-cCC---C----CCHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4799997 334 2 44688888878774 55443 3444444444443333333336777777777765
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhhHhhhhHHHHHHHHHH
Q 018756 100 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSRMRQEAETQAVEVS 175 (351)
Q Consensus 100 ~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~rlrqe~E~~~~e~~ 175 (351)
+ ...||+|+..+|.....+++....-..+.-..|-|||..++.-. .+|. -||+. +|+=..++..=..
T Consensus 70 ~----~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~-----~re~~qAq~~~~~ 140 (230)
T cd07625 70 T----HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLL-----MRELIQAQQNTKS 140 (230)
T ss_pred c----cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 4 34699999999999999999999999999999999999887632 3342 45554 3333344443333
Q ss_pred HHHH--hhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh------hhH-hHHHHHHHHHHHHH
Q 018756 176 KRQQ--RVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR------LTF-QRLVAMVEGEKNYH 244 (351)
Q Consensus 176 rrq~--k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~------lt~-~~L~~lveae~~yh 244 (351)
+|.. |.|-++ +|+ |+..|..-+++....-..+......-=..+.....+ -.+ .-|..++..+..|+
T Consensus 141 K~~~~~rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~e 217 (230)
T cd07625 141 KQEAARRLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYE 217 (230)
T ss_pred HHHHHHHHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 333333 344 777777777665554333332221111111111111 012 24666888888888
Q ss_pred HHHHHHHHHhH
Q 018756 245 LRIAAILGDVE 255 (351)
Q Consensus 245 ~~~~~IL~~L~ 255 (351)
++....++.+.
T Consensus 218 rk~l~~lE~~r 228 (230)
T cd07625 218 RKKLSLLERIR 228 (230)
T ss_pred HHHHHHHHhcc
Confidence 88877776643
No 92
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=96.76 E-value=0.35 Score=45.58 Aligned_cols=163 Identities=17% Similarity=0.275 Sum_probs=102.2
Q ss_pred hhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHh
Q 018756 83 EAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSR 162 (351)
Q Consensus 83 E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r 162 (351)
+-+..|+..+.-|...-. .++..+|-.|++....+.+-++..-.-+-..|+.||..+-+. -..+|-=-....+
T Consensus 46 Dk~D~lak~l~~yA~~E~-----~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~--cK~~r~elK~~~~ 118 (219)
T PF06730_consen 46 DKGDELAKQLQDYANTEN-----PNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTI--CKHARDELKKFNK 118 (219)
T ss_pred hhhHHHHHHHHHHHhcCC-----ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 344567777777877533 346668999999999999999999999999999999998751 1111211112222
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhH-HHHHHHHHH
Q 018756 163 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-LVAMVEGEK 241 (351)
Q Consensus 163 lrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~-L~~lveae~ 241 (351)
.|+.--.+...+ .|.|.- +|.+-..+-+|+..|...+--.....+.++..|..+|.|-- -.+.. |..||.-|.
T Consensus 119 ar~kEikq~~~L----eklr~k-~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl-~DlK~i~sdFv~iEM 192 (219)
T PF06730_consen 119 ARNKEIKQLKQL----EKLRQK-NPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKL-KDLKKIFSDFVTIEM 192 (219)
T ss_pred HHHHHHHHHHHH----HHHHcc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 222222222222 233321 23322346667777776666666666777777777776221 12333 556999999
Q ss_pred HHHHHHHHHHHHhHHHh
Q 018756 242 NYHLRIAAILGDVEAEM 258 (351)
Q Consensus 242 ~yh~~~~~IL~~L~~~l 258 (351)
.||-.+.+++..-...+
T Consensus 193 ~fHaKALEv~T~a~q~i 209 (219)
T PF06730_consen 193 VFHAKALEVYTAAYQDI 209 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887755544
No 93
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=96.61 E-value=0.61 Score=43.40 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=90.0
Q ss_pred hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756 87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (351)
Q Consensus 87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe 166 (351)
.+|.++.+-|.--. +..++.++..+|++...+..........---.|.+||+.|+.- ..-.|.+-.+=.+..+.
T Consensus 43 efa~~~~~L~~~E~----~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~ 116 (216)
T cd07627 43 EFAETLEALSSLEL----SKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQY 116 (216)
T ss_pred HHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 56666777776432 3479999999999999999888887777777888899888751 11122222222233333
Q ss_pred HHHHHHHHHHHHH---hhhcCC------CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hhH-hHHHH
Q 018756 167 AETQAVEVSKRQQ---RVREAP------NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVA 235 (351)
Q Consensus 167 ~E~~~~e~~rrq~---k~re~~------~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~-lt~-~~L~~ 235 (351)
++....++.+.+. |....+ ......+|+.++.+.+..+.....+++.+...|..++. .| ..+ ..|..
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~--~r~~dfk~~l~~ 194 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER--ERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444444433321 221110 11223445555555555555555565556666555543 22 112 45777
Q ss_pred HHHHHHHHHHHHHHHH
Q 018756 236 MVEGEKNYHLRIAAIL 251 (351)
Q Consensus 236 lveae~~yh~~~~~IL 251 (351)
|++++..++..+.++=
T Consensus 195 ~~e~~ie~~k~~ie~W 210 (216)
T cd07627 195 YLESAIESQKELIELW 210 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887775543
No 94
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=96.60 E-value=0.0012 Score=68.25 Aligned_cols=56 Identities=20% Similarity=0.456 Sum_probs=49.8
Q ss_pred ceEEEEecCCCCCCCCCccccCCCE-EEEeeeCCCCeeEEEE--CCeeeEecCCceeec
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR 338 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~-I~Vl~~~d~gWweG~~--~Gk~G~FPsnYVe~i 338 (351)
...+.|+|+|.+..+.+|+|..||. ..+++..+..||..+. .|..|++|+|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3468999999999999999999999 6778888889999875 688999999999975
No 95
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=96.53 E-value=0.45 Score=44.33 Aligned_cols=178 Identities=15% Similarity=0.227 Sum_probs=112.4
Q ss_pred HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
++++-++.+...=+--.+.=+.||+++..-|..-+ .+..|...+|++++.+++==..|...++ -|+.-|.+++
T Consensus 20 ~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p------~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~ 92 (201)
T cd07660 20 SVLRLARALASQFYQMLQTQKALGDAFADLSQKSP------ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLV 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 35555555555544444444589999999988754 4688888999999999987777777765 4777788888
Q ss_pred hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 018756 146 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ 225 (351)
Q Consensus 146 ~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qq 225 (351)
++++ +|-..=...|+.-|=|+-+=+.+++.-...-+ .++...+++.+..++.+.+..+.-|=+.+.--|.-+++.-
T Consensus 93 ~kai-~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenr 168 (201)
T cd07660 93 NKTM-EDTLMTVKQYESARIEYDAYRNDLEALNLGPR---DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENK 168 (201)
T ss_pred Hhhc-cHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8765 33344444555555555555555543111111 1122234444555555555554444444666666666633
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 018756 226 HRLTFQRLVAMVEGEKNYHLRIAAILGDV 254 (351)
Q Consensus 226 q~lt~~~L~~lveae~~yh~~~~~IL~~L 254 (351)
-++-..||.-|+.|--.||..+.++|+..
T Consensus 169 v~vm~~QL~~f~~a~~ay~sgn~~~L~~~ 197 (201)
T cd07660 169 VKVMHKQLLLFHNAISAYFSGNQKQLEQT 197 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334789999999999999999988864
No 96
>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]
Probab=96.51 E-value=0.0014 Score=65.58 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=50.7
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceeeccC
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR 340 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~i~~ 340 (351)
.-++++.|.|..++||-+..||.|.|-...++-|++|. +.|..|+||+.|+-.+..
T Consensus 264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence 35789999999999999999999999988899999998 489999999999988754
No 97
>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.0039 Score=65.88 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=43.3
Q ss_pred eEEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE-E--CCeeeEecCCceee
Q 018756 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-C--KGKAGWFPSANVEK 337 (351)
Q Consensus 284 ~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~-~--~Gk~G~FPsnYVe~ 337 (351)
..++|+|.+.++.+++|.|.+||+|.++.-. +|||++. + +...|+||+|||..
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~-dgkwwi~lhrNk~~~g~fpsNFvhc 64 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIE-DGKWWILLHRNKDEDGLFPSNFVHC 64 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeec-cceeeeeeeecccccccCcccceee
Confidence 4579999999999999999999999998765 4566655 3 34569999999944
No 98
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=96.26 E-value=0.0017 Score=68.62 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=48.8
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeeccCC
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQRI 341 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i~~~ 341 (351)
.+.++|||.+.+..||+..+||++.|+.. .-+||.+.. .|+.||+|+|-+..+++.
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 68899999999999999999999998865 457999886 799999999988876653
No 99
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=96.25 E-value=1 Score=42.07 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=110.7
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL-PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 143 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~-~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 143 (351)
+.+++.++.++..=+--...-+.||+.++--|..-+ .+ |.+...+|+|++.+++-...|...++ -|+.-|.+
T Consensus 19 ~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~------~~a~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l~T 91 (203)
T cd00011 19 ESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDP------ELAGEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSINT 91 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHH
Confidence 346777777776666555555699999999998865 23 78899999999999999999988886 47778899
Q ss_pred hhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC---Ccc---hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018756 144 MITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP---NPE---NVAKLHAAEARMQELKANMAILGKEAAAA 217 (351)
Q Consensus 144 ~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~---~~~---~~~kL~~Ae~Kl~elk~~m~~l~kea~~a 217 (351)
+.+++.- |-..=...|..-|-|+-+-+.+++.=-..-.... +++ .-...+.+.+||+.+|.- +.-=
T Consensus 92 ~~~kai~-DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~D-------v~~K 163 (203)
T cd00011 92 LVTKAIE-DTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGD-------VAIK 163 (203)
T ss_pred HHhhhcc-hHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 9988763 3333334555555555444444421100000000 000 113445556666665543 3333
Q ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 018756 218 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDV 254 (351)
Q Consensus 218 m~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L 254 (351)
|.-+++..-++-..+|..|..+-..||..+...|++.
T Consensus 164 l~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 164 LKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334443333334689999999999999999988874
No 100
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.24 E-value=0.0048 Score=70.30 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=120.7
Q ss_pred HHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 018756 69 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA 148 (351)
Q Consensus 69 r~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~ 148 (351)
+.+-+.|++--|....++-=|.+|...|.-.- ++ .-...+.+...|.+|-..
T Consensus 827 q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~a---ed---------vk~~~~~L~~~~~slk~k---------------- 878 (2399)
T KOG0040|consen 827 QALLAEIANHEPRIQEVTSRGNKMVEEGHFAA---ED---------VRSRLKSLNQNWESLKAK---------------- 878 (2399)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhccccc---HH---------HHHHHHHHHHHHHHHHHH----------------
Confidence 56778888999999988888888888776522 22 122234444444444322
Q ss_pred hhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 018756 149 PLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 226 (351)
Q Consensus 149 ~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~--~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq 226 (351)
+.-|+.|-+-+.+-|++=+-+.+-+..... +|.. ++++.-+...|++.+..-++.+..+.. .++-
T Consensus 879 --a~~r~~dle~s~q~~qy~ad~~eae~w~~e-kEpi~~stdygKdedsa~allkkhea~~~dl~a--------f~~~-- 945 (2399)
T KOG0040|consen 879 --ASQRRQDLEDSLQAQQYLADANEAESWMRE-KEPIVGSTDYGKDEDSAEALLKKHEALLSDLEA--------FGDS-- 945 (2399)
T ss_pred --HHhcccchhhHHHHHHHHHHHhhHHHHhhc-cCcccccccccchhhhHHHHHHHHHHHHHHHHH--------HhHH--
Confidence 333444445555555554444443322211 2222 566667788888887777665433322 2221
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhccCCCCCCCCCCCCCccccceEEEEecCCCCCCCCCccccCCC
Q 018756 227 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD 306 (351)
Q Consensus 227 ~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~se~~r~esa~~~~~~~s~~~~~~~~~~~ALydf~a~~~~ELsf~~GD 306 (351)
++.| +....+.++- .+| .. ..+..++.++|+|...++.+.+.+.||
T Consensus 946 ---i~~l---------------------r~qa~~cq~Q--~tp-v~-------~~g~~~v~alyd~q~kSprev~mKkgD 991 (2399)
T KOG0040|consen 946 ---IQAL---------------------REQANACRQQ--EAP-VE-------DVGKECVLALYDYQEKSPREVTMKKGD 991 (2399)
T ss_pred ---HHHH---------------------HHHHHhhhcc--CCc-hh-------hHHHHHHHHHHHHHhcCHHHHHHhhhh
Confidence 1111 1111111111 111 10 113345789999999999999999999
Q ss_pred EEEEeeeCCCCeeEEEECCeeeEecCCceeeccCC
Q 018756 307 YVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 341 (351)
Q Consensus 307 ~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i~~~ 341 (351)
+++++..+.-+||.++++.+.|++|..||+.+.+-
T Consensus 992 vltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 992 VLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 99988888889999999999999999999987654
No 101
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.15 E-value=0.54 Score=42.92 Aligned_cols=118 Identities=9% Similarity=0.167 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--hhhhh-hhhHhhhhHHHHHHHHHHHHHHhh
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--ARHLA-QRYSRMRQEAETQAVEVSKRQQRV 181 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~R~L~-~dy~rlrqe~E~~~~e~~rrq~k~ 181 (351)
.++.++-.+|..+..++...+.|...+..+|++||+.|+.= .++-. -|+.. .||+.+ .... .
T Consensus 58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l-------~e~l------l 124 (185)
T cd07628 58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEEL-------SDYL------L 124 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHH------H
Confidence 49999999999999999999999999999999999988751 11110 11111 123321 1111 0
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 182 REAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 182 re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~ 253 (351)
..+++.|..+++..... +..-+...+.. .+..+ ..|..|++.+..|.+.+.+.-+.
T Consensus 125 --------~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~-k~~elk~~l~~~a~~qi~~y~~~~~~W~~ 181 (185)
T cd07628 125 --------TDEVENAKETSDAFNKE-------VLKEYPNFERI-KKQEIKDSLGALADGHIDFYQGLVEDWEK 181 (185)
T ss_pred --------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13455566666555554 33333333221 11112 45788999999999888665544
No 102
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.06 E-value=0.0049 Score=67.84 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=47.2
Q ss_pred eEEEEecCCCC------CCCCCccccCCCEEEEeeeC-CCCeeEEEE-CCeeeEecCCceeeccC
Q 018756 284 FLAEAIHPFTA------ASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQR 340 (351)
Q Consensus 284 ~~~~ALydf~a------~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~-~Gk~G~FPsnYVe~i~~ 340 (351)
..|.+.|+|.+ ..+.||.+..|++|.|.-.. .+|+++|++ .|+.|.+|+|||+.+.+
T Consensus 448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 35788898877 23568999999999998544 558999997 89999999999998764
No 103
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.01 E-value=0.0023 Score=66.57 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=46.0
Q ss_pred eEEEEecCCCCCCCC-------CccccCCCEEEEeeeCCCCeeEEEEC-----CeeeEecCCceeec
Q 018756 284 FLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKR 338 (351)
Q Consensus 284 ~~~~ALydf~a~~~~-------ELsf~~GD~I~Vl~~~d~gWweG~~~-----Gk~G~FPsnYVe~i 338 (351)
..++|+|||+|..+. .|.|.+||++.|+++.|.+||.+... +..|.+|+...+..
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 468899999987654 58999999999999999999999863 56799999766543
No 104
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=95.85 E-value=1.7 Score=41.28 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCCCccceecHHHH--HHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhc-cCCCCCCCCc
Q 018756 31 YERSDVMVIDEVEM--QRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGA-ENNQNINENI 107 (351)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~-e~~~~~~~~~ 107 (351)
|.-+|..+.|.... .-+++|-+||.++-.=-.-.|+++-+.. .+|.+|-.-|. |. ...
T Consensus 17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~--------------efa~s~~~L~~~E~-----~~~ 77 (234)
T cd07664 17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTA--------------AFAKSAAMLGNSED-----HTA 77 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcCcc-----cch
Confidence 44455555544332 2467788888776555444555544433 45555555565 32 246
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 108 ~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
+++||..+|+....|......-....--.|-+||..++-
T Consensus 78 ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR 116 (234)
T cd07664 78 LSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR 116 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 999999999999999999888888888889999988875
No 105
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.69 E-value=0.57 Score=44.84 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=81.6
Q ss_pred hhHHHhhhh---ccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--hh-hhhhh
Q 018756 88 LSEDCCRYG---AENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--AR-HLAQR 159 (351)
Q Consensus 88 l~e~~~kyg---~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~R-~L~~d 159 (351)
+.+....|| +.|+ +.+ ..++.+|-.+|.++..++..-+.+...+..+|++||+.|+.= +++-. -| .+..+
T Consensus 87 y~~~~~~fgk~~~lws-~~E-~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~ 164 (243)
T cd07666 87 YFEELKEYGPIYTLWS-ASE-EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAE 164 (243)
T ss_pred HHHHHHHHHHHHHHHh-ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 4666 334 459999999999999999999999999999999999998752 12211 01 23334
Q ss_pred hHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHH
Q 018756 160 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVE 238 (351)
Q Consensus 160 y~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lve 238 (351)
|++++.-......+ +.....+++.+++|.++.... +..-|...+.+-.+ .+ +-+..|++
T Consensus 165 le~k~e~l~k~~~d------------r~~~~~ev~~~e~kve~a~~~-------~k~e~~Rf~~~k~~-D~k~~~~~yae 224 (243)
T cd07666 165 LDSKVEALANKKAD------------RDLLKEEIEKLEDKVECANNA-------LKADWERWKQNMQT-DLRSAFTDMAE 224 (243)
T ss_pred HHHHHHHHHhhhhh------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44432222221111 111223455555555555333 33334433332111 12 45777888
Q ss_pred HHHHHHHHHHHH
Q 018756 239 GEKNYHLRIAAI 250 (351)
Q Consensus 239 ae~~yh~~~~~I 250 (351)
.+..|++++...
T Consensus 225 ~~i~~~~~~~~~ 236 (243)
T cd07666 225 NNISYYEECLAT 236 (243)
T ss_pred HHHHHHHHHHHH
Confidence 899998887654
No 106
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=95.63 E-value=2.1 Score=40.49 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=83.0
Q ss_pred hhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhH
Q 018756 87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (351)
Q Consensus 87 ~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe 166 (351)
.+|.++.--|+- +++.|++++..+|+..-.|.++......+---.|-|||+-++.- ..-++-+-++==|.-++
T Consensus 63 ~fs~al~~L~~~-----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~--~~A~K~~l~rR~ral~~ 135 (219)
T cd07621 63 KISAALTQLATS-----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRD--TQAAKDLLYRRLRCLAN 135 (219)
T ss_pred HHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444444444442 44689999999999999998877777666666888999887751 11122222211122334
Q ss_pred HHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHH
Q 018756 167 AETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYH 244 (351)
Q Consensus 167 ~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh 244 (351)
.|.-...+.+++.+. .++.+||.+.++....+..+++-+...|...+. +|+. + ..|+.|.|.+..--
T Consensus 136 ~q~A~k~L~KaR~k~---------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~--~Rv~~fk~~lve~aE~~ik~A 204 (219)
T cd07621 136 YENANKNLEKARAKN---------KDVHAAEAAQQEACEKFESMSESAKQELLDFKT--RRVAAFRKNLVELAELEIKHA 204 (219)
T ss_pred HHHHHHHHHHhHhch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555542 244444444444444444444446666666554 4422 2 35666766665544
Q ss_pred HHHHHHHH
Q 018756 245 LRIAAILG 252 (351)
Q Consensus 245 ~~~~~IL~ 252 (351)
+...++|.
T Consensus 205 k~~~~~l~ 212 (219)
T cd07621 205 KAQIQLLK 212 (219)
T ss_pred HHHHHHHH
Confidence 44444443
No 107
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=95.49 E-value=0.43 Score=52.71 Aligned_cols=182 Identities=18% Similarity=0.297 Sum_probs=118.0
Q ss_pred ecHHHHHHH---HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHH
Q 018756 39 IDEVEMQRH---QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 115 (351)
Q Consensus 39 ~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~ 115 (351)
+|+.|...| ..|+|++-+-.++...++++|-.-|-|.. + -.+-..+| + .+...|-++..|
T Consensus 23 ~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~-------~----~~d~~~~~---~---~~~~~~~~l~~f 85 (785)
T KOG0521|consen 23 LDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGK-------G----LKDLFSLG---Q---DEEVISETLQKF 85 (785)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHH-------H----HHHHHHhc---c---CchhhhhHHHHH
Confidence 477777655 57888888888888888888777766531 2 12224444 2 234578889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHH
Q 018756 116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLH 194 (351)
Q Consensus 116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~ 194 (351)
..+..++......|...+...+..||..++.+|+.++ +-+...+++..++++.-.....+..-+.| +. .++....|.
T Consensus 86 s~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v-~~~kk~f~ka~~~~d~a~~k~~~l~k~~~-~~~~~e~~~~l~ 163 (785)
T KOG0521|consen 86 SKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEV-KELKKLFEKASEEYDLALVKYSRLPKKRR-SKVKTEVEEELA 163 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHhhHHHHHHHhhhhhhccc-cchhHHHHHHHH
Confidence 9999999999999999999999999999999999876 33355666777888776666654433322 22 455445666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHH
Q 018756 195 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLR 246 (351)
Q Consensus 195 ~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~ 246 (351)
.+..+|+-..-- ...+++.++...+-.-+.-+..+++|+..|+++
T Consensus 164 ~~r~~f~~~~~~-------y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~ 208 (785)
T KOG0521|consen 164 AARRKFQLTALD-------YVLALNVLQAKKQFEILETLLGFMHAQINFFKQ 208 (785)
T ss_pred HHHHHHHHHHHH-------HHHhhhhhhcccchHHHHHHHHHHHhccchhcc
Confidence 555565544332 222222222211111145567777777777643
No 108
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=95.44 E-value=0.0023 Score=59.59 Aligned_cols=52 Identities=27% Similarity=0.444 Sum_probs=45.5
Q ss_pred EEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEEECCeeeEecCCceee
Q 018756 286 AEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEK 337 (351)
Q Consensus 286 ~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPsnYVe~ 337 (351)
+.++++|.+...+||+|.+||.+.+++.. +.+|+..+..|..|++|.||...
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 56789999999999999999999888754 44899999999999999999843
No 109
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=95.41 E-value=2.5 Score=40.15 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=96.6
Q ss_pred HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 67 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
|.+++.|++.++.--.+...++||- -..+...-.||.||+.+.+.++++....+.+...+-.++|.||..=+.
T Consensus 34 Y~kal~a~~~a~~~y~dAl~Kige~-------A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E 106 (232)
T cd07646 34 YEKALASVTFAAKGYFDALVKMGEL-------ASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVE 106 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667766665555555555443 221111235999999999999999999999999999999999876655
Q ss_pred cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHH------hhhcCCCcchHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHH
Q 018756 147 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ------RVREAPNPENVAKLHAAEARMQELKA-NMAILGKEAAAALA 219 (351)
Q Consensus 147 ~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~------k~re~~~~~~~~kL~~Ae~Kl~elk~-~m~~l~kea~~am~ 219 (351)
-|.+.+..-.|+-..|+-..+..++|-+. |.+..+ .+..+...-|.++-+.-+ .-..|..-......
T Consensus 107 ----~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~--k~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k 180 (232)
T cd07646 107 ----LDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGS--KNPQKYSDKELQYIEAISNKQGELENYVSDGYK 180 (232)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665566655555555555544222 221211 111122222222222111 11122222222222
Q ss_pred H-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756 220 A-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 220 ~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~ 253 (351)
. +-+.-.|.+ +.+-+++......||.....+|.+
T Consensus 181 ~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~ 217 (232)
T cd07646 181 TALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 212234444 356667777788899888888765
No 110
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=95.38 E-value=2.5 Score=39.92 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=76.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhhHhhhhHHHHHHHHHHHHHHhh
Q 018756 105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRV 181 (351)
Q Consensus 105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~rlrqe~E~~~~e~~rrq~k~ 181 (351)
.+.|++|+..+|+..-.|..+......+---.|.|||+-++. ++.++- .||+ |.-+..|.-...+++++.+.
T Consensus 75 ~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~-----ral~~~e~A~~~L~KaR~k~ 149 (218)
T cd07663 75 PTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRA-----RALADYENSNKALDKARLKS 149 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhh
Confidence 346999999999999999998888888888889999998875 122221 1221 12233344444454554442
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHH
Q 018756 182 REAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILG 252 (351)
Q Consensus 182 re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~ 252 (351)
++ .++...++++|+.+|+++-.. +...|...+. +|+. + ..|+.+.+.+..--+.....|.
T Consensus 150 ke--v~~aE~~~~ea~~~Fe~IS~~-------~k~El~rF~~--~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~ 211 (218)
T cd07663 150 KD--VKQAEAHQQECCQKFEKLSES-------AKQELISFKR--RRVAAFRKNLIEMTELEIKHAKNNVSLLQ 211 (218)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334555566666555554 6666655554 3422 2 3566676666554444444443
No 111
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=95.26 E-value=2.2 Score=39.58 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=79.9
Q ss_pred hhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhhHh
Q 018756 88 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSR 162 (351)
Q Consensus 88 l~e~~~kyg~e~~~-~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r 162 (351)
|+.+..-||.-... +..++.+|.++-.+|.++..+...-+.+... ..+|++||+.|..=. ++-. -|.+.
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~----- 120 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELL----- 120 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34444445543221 2334579999999998888888766666655 489999999886421 1111 22222
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHH
Q 018756 163 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEK 241 (351)
Q Consensus 163 lrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~ 241 (351)
..++|.....+.++... ...+++.|...++..... +..-+...+. +.+..+ ..|.+|++.+.
T Consensus 121 -q~~~e~~~~~L~~k~~~--------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~-~K~~dlk~~l~~~A~~qi 183 (201)
T cd07622 121 -QYDLEKAEDALANKKQQ--------GEEAVKEAKDELNEFVKK-------ALEDVERFKK-QKVRDLKEILISYAKLQI 183 (201)
T ss_pred -HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 12223333333333221 123444454444443332 4333333332 122223 45888999999
Q ss_pred HHHHHHHHHHHHhHH
Q 018756 242 NYHLRIAAILGDVEA 256 (351)
Q Consensus 242 ~yh~~~~~IL~~L~~ 256 (351)
.|.+.+.+.-+.+..
T Consensus 184 ~~~~~~~~~W~~~~~ 198 (201)
T cd07622 184 KLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999998877666554
No 112
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=95.16 E-value=1.8 Score=46.33 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhHHHhhh
Q 018756 232 RLVAMVEGEKNY-------HLRIAAILGDVEAEMVS 260 (351)
Q Consensus 232 ~L~~lveae~~y-------h~~~~~IL~~L~~~l~s 260 (351)
-|.+|+...+.| |+......++|+..++.
T Consensus 198 pllafl~slf~f~h~g~el~qDF~pfk~qlq~s~Qn 233 (812)
T KOG1451|consen 198 PLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQN 233 (812)
T ss_pred HHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHH
Confidence 456666666555 35555566666666554
No 113
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=95.02 E-value=3.2 Score=39.04 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=108.6
Q ss_pred HHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 66 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 66 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
-+++=++.+...=|--+..=..|||.++--|.--+ ...+..|...+|++++.|++-=..|...++ -|+.-|++++
T Consensus 20 ~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~----~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l 94 (215)
T cd07659 20 GLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP----QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYL 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHH
Confidence 35666666666666666666678888888888644 235888999999999999999999999887 4788899999
Q ss_pred hcChhhhhhhhh-------hhhHhhhhHHHHHHHHHHHHHHhhhcC------CCcch---HHHHHHHHHHHHHHHHHHHH
Q 018756 146 TGAPLEDARHLA-------QRYSRMRQEAETQAVEVSKRQQRVREA------PNPEN---VAKLHAAEARMQELKANMAI 209 (351)
Q Consensus 146 ~~~~~e~~R~L~-------~dy~rlrqe~E~~~~e~~rrq~k~re~------~~~~~---~~kL~~Ae~Kl~elk~~m~~ 209 (351)
+++.- |.+-=. +.|+.-|-++|....+- ..-+..-|. .|.+- ..--+.+.+||+.+++-
T Consensus 95 ~Kaip-DT~lTikkY~~ar~EY~ayc~kvkEmd~ee-~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D--- 169 (215)
T cd07659 95 NKAIP-DTKLTIKKYADVKFEYLSYCLKVKEMDDEE-YSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD--- 169 (215)
T ss_pred HhhCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---
Confidence 98863 222222 34555555554432211 000000000 01110 01115677777777764
Q ss_pred hhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018756 210 LGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 210 l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~ 253 (351)
+.-=|.-+|+.-=++-..||..|+.|--.||..+.+++..
T Consensus 170 ----V~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~ 209 (215)
T cd07659 170 ----VLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE 209 (215)
T ss_pred ----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3233444555322233578999999999999999888653
No 114
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=94.77 E-value=0.0088 Score=64.23 Aligned_cols=57 Identities=23% Similarity=0.501 Sum_probs=49.9
Q ss_pred ceEEEEecCCCCCCCCCccccCCCEEEEeeeC-CCCeeEEE--ECCeeeEecCCceeecc
Q 018756 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ 339 (351)
Q Consensus 283 ~~~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~-d~gWweG~--~~Gk~G~FPsnYVe~i~ 339 (351)
...|.++|.|.+.+++++++.+|+++.+++.. .+||-+++ ++|..|+||.+|++.+.
T Consensus 578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 44689999999999999999999999988644 67999998 68999999999998754
No 115
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.49 E-value=4.6 Score=38.49 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018756 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (351)
Q Consensus 48 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~ 127 (351)
++|-+||.++-+=-.-.|++.-+... +|.++---|.-- ....|++||..+|+....|....+
T Consensus 36 ~qLk~L~k~~~~lv~~r~eLa~~~~e--------------Fa~s~~~L~~~E----~~~~Ls~als~laev~~~i~~~~~ 97 (234)
T cd07665 36 QRLRKLHAVVETLVNHRKELALNTAL--------------FAKSLAMLGSSE----DNTALSRALSQLAEVEEKIEQLHQ 97 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHH
Confidence 45667776665544444555544443 333333334322 235799999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhh
Q 018756 128 DFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 128 ~l~~~~~~~~~~PL~~~~~ 146 (351)
.-....--+|-+||..++-
T Consensus 98 ~qa~qd~~~f~e~l~eYiR 116 (234)
T cd07665 98 EQANNDFFLLAELLADYIR 116 (234)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 9999999999999988875
No 116
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=94.44 E-value=4.6 Score=38.25 Aligned_cols=174 Identities=13% Similarity=0.180 Sum_probs=97.9
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 144 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~ 144 (351)
|.|.+++-|++.++.--.+++-++||--.- .+ ..-.||.+|+.+.+.++++.+..+.....+--.+|.||-.=
T Consensus 30 k~Y~KA~~a~~~A~~~y~dal~Kige~A~~----s~---~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k 102 (226)
T cd07645 30 KNYEKAVNAMVLAGKAYYDGVAKIGEIAAV----SP---VSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERK 102 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889998888888887777765443 11 12359999999999999999988888888888999998766
Q ss_pred hhcChhhhhhhhhhhhHhhhhH-------HHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHH-HHHHHHHHHhhHHHH
Q 018756 145 ITGAPLEDARHLAQRYSRMRQE-------AETQAVEVSKRQQRVREAP-NPENVAKLHAAEARM-QELKANMAILGKEAA 215 (351)
Q Consensus 145 ~~~~~~e~~R~L~~dy~rlrqe-------~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl-~elk~~m~~l~kea~ 215 (351)
+..|. +-+..-.++--.| +|....+..+ ..+.+..+ |+. |-..=|..+ +.+.+.-..|..-..
T Consensus 103 ~elD~----kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK-~RRKsqg~kn~~---kye~Ke~~~~e~~~~~q~el~~f~~ 174 (226)
T cd07645 103 TDLDV----KYMTATLKRYQTEHKNKLDSLEKSQADLKK-IRRKSQGRRNAS---KYEHKENEYLETVTSRQSDIQKFIA 174 (226)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443 3333222222223 3444444322 22222222 231 211111111 111121222332233
Q ss_pred HHHHH-HHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHH
Q 018756 216 AALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 216 ~am~~-ve~qqq~lt--~~~L~~lveae~~yh~~~~~IL~~ 253 (351)
.+... +-+.-.|.+ +..=+++......||..+..+|.+
T Consensus 175 ~~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 175 DGCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222 222234444 345566777778889888888765
No 117
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=94.37 E-value=4 Score=38.00 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
+...|.+|+...|+++..|+++.++--..=-..|.|-|..+.
T Consensus 63 ~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~ 104 (199)
T cd07626 63 TSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYK 104 (199)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 345799999999999999998877766655555555554443
No 118
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.61 E-value=6.7 Score=37.19 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=40.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 018756 105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL 150 (351)
Q Consensus 105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~ 150 (351)
.++|..++-.+-.....|++....|...|...+..||+.+..+-.+
T Consensus 55 ~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k 100 (233)
T cd07649 55 EGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKK 100 (233)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889888888889999999999999999999999999986443
No 119
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.34 E-value=6.7 Score=36.34 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756 46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~ 125 (351)
-|.+|-+++..+-.--.-+|++.-+ ...+|.++..-|+.-. +....|++++..+|+..-.+.+.
T Consensus 16 l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~--~~~~~l~~~l~~lse~~e~i~~~ 79 (198)
T cd07630 16 LSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDE--ASVVALNRLCTKLSEALEEAKEN 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccc--cchHhHHHHHHHHHHHHHHHHHH
Confidence 3566666666554433333433332 2234444444444211 01117899999999999999998
Q ss_pred HHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHH
Q 018756 126 QEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE 202 (351)
Q Consensus 126 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~e 202 (351)
.+....+---.|-+||+-+.. ++.++- .||. +..++++.-...++|++.+.++ .++ .+.+.|+.+|++
T Consensus 80 ~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~-----~~~~~~~~a~k~l~Kar~~k~~--~ae--~~~~~a~~~fe~ 150 (198)
T cd07630 80 IEVVAGNNENTLGLTLDLYSRYSESEKDMLFRRT-----CKLIEFENASKALEKAKPQKKE--QAE--EAKKKAETEFEE 150 (198)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhhHH--HHH--HHHHHHHHHHHH
Confidence 888888888899999988764 222221 2222 2233333344444443333222 122 555566666766
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 203 LKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 203 lk~~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~~ 253 (351)
+-+. +...|..++. +|+. + ..|..|++.+..--....+++..
T Consensus 151 iS~~-------~k~EL~rF~~--~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~ 194 (198)
T cd07630 151 ISSL-------AKKELERFHR--QRVLELQSALVCYAESQIKNAKEAAAVLTK 194 (198)
T ss_pred HHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665 4444444433 3322 2 45777888877766666665543
No 120
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.22 E-value=0.18 Score=36.20 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=29.3
Q ss_pred cccCCCEEEEeeeCCCC-eeEE-EECCeeeEecCCcee
Q 018756 301 SLGVGDYVVVRKVSPSG-WSEG-ECKGKAGWFPSANVE 336 (351)
Q Consensus 301 sf~~GD~I~Vl~~~d~g-WweG-~~~Gk~G~FPsnYVe 336 (351)
.+..|+.|.|+.....+ |+.. ..+|..||++..||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46789999998776555 9999 569999999999985
No 121
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=91.95 E-value=0.14 Score=55.72 Aligned_cols=49 Identities=29% Similarity=0.258 Sum_probs=39.7
Q ss_pred EecCCCCCCCCCccccCCCEEEEeeeCCC-CeeEEE--ECCeeeEecCCcee
Q 018756 288 AIHPFTAASEKELSLGVGDYVVVRKVSPS-GWSEGE--CKGKAGWFPSANVE 336 (351)
Q Consensus 288 ALydf~a~~~~ELsf~~GD~I~Vl~~~d~-gWweG~--~~Gk~G~FPsnYVe 336 (351)
+--+|+...++.|.|..||.|+|++.... .||.|. ++++.|.||.+-|.
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 33345567889999999999999986654 599996 48999999998877
No 122
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=91.64 E-value=12 Score=35.34 Aligned_cols=176 Identities=13% Similarity=0.131 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 018756 46 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 125 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~ 125 (351)
-|++|.+|+.++-.--.-=|++.-. ...+|.++..-|+. +...|++++..+++....|.++
T Consensus 35 ~~~~Lk~~~~~~e~l~~~rk~la~~--------------~~~~s~sl~~L~~~-----e~t~L~~~l~~laev~eki~~l 95 (218)
T cd07662 35 YHNRVKDSSAKSDRMTRSHKSAADD--------------YNRIGSSLYTLGTQ-----DSTDICKFFLKVSELFDKTRKI 95 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHH
Confidence 5788888887765443333333221 12344444444543 2347999999999998888876
Q ss_pred HHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 018756 126 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKA 205 (351)
Q Consensus 126 ~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~ 205 (351)
......+=--.+.|-|+-++. ...-++-|-++==|.-++.|.-.-.+++++.+-+| ..+...++++|+.+|+++-.
T Consensus 96 ~~~~A~~e~l~L~e~L~~Y~r--~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~ke--v~~aE~~~~~a~~~Fe~IS~ 171 (218)
T cd07662 96 EARVAADEDLKLSDLLKYYLR--ESQAAKDLLYRRSRSLVDYENANKALDKARAKNKD--VLQAETTQQLCCQKFEKISE 171 (218)
T ss_pred HHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHH
Confidence 666544433344555554432 01112222222112334455555556666555332 33334677777778777766
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhhh-H-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 206 NMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 206 ~m~~l~kea~~am~~ve~qqq~lt-~-~~L~~lveae~~yh~~~~~IL~~ 253 (351)
. +...|...+. .|+. + ..|+.++|.+..--+...++|..
T Consensus 172 ~-------aK~El~rF~~--~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~ 212 (218)
T cd07662 172 S-------AKQELIDFKT--RRVAAFRKNLVELAELELKHAKGNLQLLQS 212 (218)
T ss_pred H-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5555555544 3422 2 35666776665544444444443
No 123
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=91.48 E-value=12 Score=34.99 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG 147 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~ 147 (351)
.|..|+..+=.....|++....|...|.+++.+||..+...
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~ 97 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASS 97 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899988888889999999999999999999999998764
No 124
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.07 E-value=15 Score=35.24 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhh-----hhhhhhhhhHhhhhHHHHHHHHHHH
Q 018756 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLE-----DARHLAQRYSRMRQEAETQAVEVSK 176 (351)
Q Consensus 104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e-----~~R~L~~dy~rlrqe~E~~~~e~~r 176 (351)
-...++..|-.|+.++.+.+..=++|...+.++|+++|+.|+.= +++- |-.++ ||+.+- |.. ..
T Consensus 101 lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~--d~E~l~---E~l----~~ 171 (240)
T cd07667 101 LEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQA--EYEAKL---EAV----AL 171 (240)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH----HH
Confidence 34568999999999999999999999999999999999998752 1221 22233 344321 222 22
Q ss_pred HHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 177 RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 177 rq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~-~~L~~lveae~~yh~~~~~IL~~ 253 (351)
|..+ ++.-+.+.+++...+...+++...-+...+. +.+..+ ..|..|.+....|++.+.++=+.
T Consensus 172 rre~------------~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~-~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~ 236 (240)
T cd07667 172 RKEE------------RPKVPTDVEKCQDRVECFNADLKADMERWQN-NKRQDFRQLLMGMADKNIQYYEKCLTAWES 236 (240)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3233 3333455666666665555556555554443 222223 46888999999999988766543
No 125
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=90.90 E-value=15 Score=34.85 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=63.8
Q ss_pred HHHHhhhhchhhhhHHHHHHhHH--HhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 018756 51 EKLYRSTRGTKDFQRDLVKVAEV--FTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQED 128 (351)
Q Consensus 51 ~~~~~~~~~~~~~q~~~vr~~~~--~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~ 128 (351)
+.|+.-|+-|..|=+||+..+.- -|---| +..|..-..||....+ ... ++|..|...+......++.....
T Consensus 8 ~~l~~~~~~G~~~ckel~~f~kERa~IE~~Y-----AK~L~kLa~k~~k~~~-~~~-Gtl~~aw~~~~~e~e~~a~~H~~ 80 (239)
T cd07658 8 EELRRYVKQGGDFCKELATVLQERAELELNY-----AKGLSKLSGKLSKASK-SVS-GTLSSAWTCVAEEMESEADIHRN 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhc-cCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888887777642 222222 2233333445533333 223 47999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHhhhc
Q 018756 129 FNRLLSSQVLDPLRAMITG 147 (351)
Q Consensus 129 l~~~~~~~~~~PL~~~~~~ 147 (351)
|...|...++.||+.++..
T Consensus 81 la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 81 LGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999885
No 126
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=90.60 E-value=16 Score=34.74 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhhHhhhhHHHH
Q 018756 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEAET 169 (351)
Q Consensus 104 ~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~rlrqe~E~ 169 (351)
.+|....+...+=.....++..+..+..++..++++||..|...- ..+++..|..++++...+++.
T Consensus 59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k 130 (237)
T cd07657 59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEK 130 (237)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777788899999999999999999999988732 123466666655555444433
No 127
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.58 E-value=13 Score=33.89 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
..|+.++-.+|.++-...-.=+.|...+..+|.+||+.|+.
T Consensus 59 ~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 59 SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ 99 (187)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35899999999999999999999999999999999999876
No 128
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=90.38 E-value=16 Score=34.40 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=52.7
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 143 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~-~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 143 (351)
+.|.+++-|+..++.--.+++.++||--. +. .+| .||.+|+++.++++++-..-+.....+--.+|-||-.
T Consensus 30 k~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~----~s----~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEk 101 (215)
T cd07644 30 NNYLRAFHALSEAAEVYFSAIAKIGEQAL----QS----LTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDK 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999888888888777766432 22 233 5999999999999888766555555555566666544
Q ss_pred hhhcC
Q 018756 144 MITGA 148 (351)
Q Consensus 144 ~~~~~ 148 (351)
=...|
T Consensus 102 k~elD 106 (215)
T cd07644 102 NTKLD 106 (215)
T ss_pred HHHHh
Confidence 44433
No 129
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=89.28 E-value=19 Score=33.72 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
+++..|.-.+-.....++.....+..++.+++++||..++.
T Consensus 61 ~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 61 FSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778887888788999999999999999999999999986
No 130
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.02 E-value=26 Score=33.65 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred HHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCC-CCCC--CchhHHHHHHHHHHHHHHHHHHH
Q 018756 52 KLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ-NINE--NILPKAAAIYGDARKHVEKEQED 128 (351)
Q Consensus 52 ~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~-~~~~--~~~~~a~~~~g~a~~~~~~~~~~ 128 (351)
.|..-|.-|-.|=.||...+.=-...= -|-+.+|..-+.||..--.. +..+ .++-.|...+-..+..++..++.
T Consensus 9 ~l~k~~~~Gi~~~~~i~~f~kERa~IE---keYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~ 85 (253)
T cd07676 9 NLEKHTQWGIEVLEKYIKFVKERTEIE---LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEV 85 (253)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443221111 12233566667777554210 0011 12334555544555788999999
Q ss_pred HHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhhHhhhhHH
Q 018756 129 FNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEA 167 (351)
Q Consensus 129 l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~rlrqe~ 167 (351)
+..+|..+|++||..++..- ...+|+++....++...++
T Consensus 86 ~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~l 130 (253)
T cd07676 86 ISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQL 130 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888721 1223555555444444433
No 131
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=87.72 E-value=0.88 Score=33.24 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=28.5
Q ss_pred cccCCCEEEEeeeCCCCeeEEEEC-CeeeEecCCce
Q 018756 301 SLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANV 335 (351)
Q Consensus 301 sf~~GD~I~Vl~~~d~gWweG~~~-Gk~G~FPsnYV 335 (351)
.+..|+.+.++...+.+|+..... |..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 467899999987755589999875 99999987765
No 132
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=87.62 E-value=0.95 Score=36.90 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCCCccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756 296 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 338 (351)
Q Consensus 296 ~~~ELsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i 338 (351)
...+|.+++|+.+.|+...+.+-|-++. .|+.||+|.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 4568999999999999999888888886 899999999988544
No 133
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.20 E-value=0.61 Score=43.56 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=31.7
Q ss_pred cccCCCEEEEeeeCC-CCeeEEEE-CCeeeEecCCceeec
Q 018756 301 SLGVGDYVVVRKVSP-SGWSEGEC-KGKAGWFPSANVEKR 338 (351)
Q Consensus 301 sf~~GD~I~Vl~~~d-~gWweG~~-~Gk~G~FPsnYVe~i 338 (351)
++..|+.+.|+...+ .||+..+. +|+.||+|..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 577899999998665 68999885 899999999998754
No 134
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=86.31 E-value=37 Score=33.97 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=95.4
Q ss_pred HhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh---
Q 018756 74 FTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL--- 150 (351)
Q Consensus 74 ~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~--- 150 (351)
+.-.-|+..+.-..+|++.|--|.--+ ...-+.|..-||+.++.+++---.+..-++ -++--|+++.+++.-
T Consensus 158 ml~a~y~lsqt~k~FGd~F~~i~vhEp----Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ik-pmlsDL~tYlnkaiPDTr 232 (429)
T KOG3651|consen 158 MLQAQYKLSQTQKEFGDIFCDIAVHEP----QQTASEAFSSFGDKHRMIEKKGSESAKPIK-PMLSDLQTYLNKAIPDTR 232 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCc----chhHHHHHHHHHHHHHHHHHhccchhhhhh-HHHHHHHHHHhccCCcch
Confidence 334445666666678888888887666 235677888999998888875555544444 455668888888753
Q ss_pred -hhhhhhhhhhHhhhhHHHHHHHHHHHH----------HHh-hhcCC-Ccch---HHHHHHHHHHHHHHHHHHHHhhHHH
Q 018756 151 -EDARHLAQRYSRMRQEAETQAVEVSKR----------QQR-VREAP-NPEN---VAKLHAAEARMQELKANMAILGKEA 214 (351)
Q Consensus 151 -e~~R~L~~dy~rlrqe~E~~~~e~~rr----------q~k-~re~~-~~~~---~~kL~~Ae~Kl~elk~~m~~l~kea 214 (351)
-+-|-||-.|.= -+-++.|..= |.- -|=+. |++- ..=-+.|.+||..++.- .
T Consensus 233 LTikkYlDvKfeY-----LSYCLKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~D-------V 300 (429)
T KOG3651|consen 233 LTIKKYLDVKFEY-----LSYCLKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDD-------V 300 (429)
T ss_pred hhhHHhhhhhHHH-----HHHHHhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHH-------H
Confidence 234445544332 1222222000 000 00011 3331 01114577777766653 3
Q ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 215 AAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 215 ~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
..-|.-+++..-+--.++|..|+...-.||+.+++||+++.
T Consensus 301 leKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 301 LEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33354444432222257899999999999999999998743
No 135
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.90 E-value=0.47 Score=47.49 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=30.4
Q ss_pred CCCccccCCCEEEEeeeCCCCeeEEEE---CCeeeEecC
Q 018756 297 EKELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPS 332 (351)
Q Consensus 297 ~~ELsf~~GD~I~Vl~~~d~gWweG~~---~Gk~G~FPs 332 (351)
....+|...|+|.|-++-+++||-|++ .+..||+|+
T Consensus 79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 335789999999999999999999995 456699996
No 136
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=84.14 E-value=38 Score=31.97 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
++|..|...+=.....|+..+..|..+|. ++.+||..|..
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~ 100 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAK 100 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46888988888888999999999999995 79999998876
No 137
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=82.86 E-value=0.56 Score=49.88 Aligned_cols=44 Identities=34% Similarity=0.541 Sum_probs=34.7
Q ss_pred CccccCCCEEEEeeeC-CCCeeEEEE--CCeeeEecCCceeeccCCC
Q 018756 299 ELSLGVGDYVVVRKVS-PSGWSEGEC--KGKAGWFPSANVEKRQRIP 342 (351)
Q Consensus 299 ELsf~~GD~I~Vl~~~-d~gWweG~~--~Gk~G~FPsnYVe~i~~~p 342 (351)
-|.+..||++.++.-. ...||+|.. .+..||||++-|.+.+..|
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 4788999999877543 457999996 5678999999998766555
No 138
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=82.04 E-value=36 Score=30.13 Aligned_cols=89 Identities=8% Similarity=0.150 Sum_probs=60.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP 185 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~ 185 (351)
++|..|...+...+..++.....|...+...+.+|++.+.. ..++.......+..++.+++.....++.+ |.
T Consensus 53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~-~~~~~rk~~~~~~~~~~k~~~~~~~~~~k---k~---- 124 (191)
T cd07610 53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE-DKEQARKKELAEGEKLKKKLQELWAKLAK---KA---- 124 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh----
Confidence 57999999999999999999999999999999999998877 32332344445555555555444444433 21
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q 018756 186 NPENVAKLHAAEARMQELKAN 206 (351)
Q Consensus 186 ~~~~~~kL~~Ae~Kl~elk~~ 206 (351)
..+...+..++...+..
T Consensus 125 ----~~~y~~~~~~~~~~~~~ 141 (191)
T cd07610 125 ----DEEYREQVEKLNPAQSE 141 (191)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 13555555555555444
No 139
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=81.26 E-value=2.9 Score=30.11 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.7
Q ss_pred ccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCce
Q 018756 300 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 335 (351)
Q Consensus 300 Lsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYV 335 (351)
..+..|..+.|.. ...+|...+.+|..||++.+.+
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence 3456777777774 4678999999999999998765
No 140
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.71 E-value=56 Score=31.52 Aligned_cols=183 Identities=8% Similarity=0.095 Sum_probs=96.0
Q ss_pred HHHhhhhchhhhhHHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018756 52 KLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNR 131 (351)
Q Consensus 52 ~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~ 131 (351)
-||.-.+-++.+-+|+...+.-=.++= -+-+..|..-+.+++.- +...+|..+.-.+-.....|++....|..
T Consensus 16 ~L~~r~k~g~~~~kel~~f~keRa~iE---e~Yak~L~kLak~~~~~----~~~Gt~~~~~~~~~~e~e~~a~~H~~la~ 88 (269)
T cd07673 16 VLYHNMKHGQISTKELSDFIRERATIE---EAYSRSMTKLAKSASNY----SQLGTFAPVWDVFKTSTEKLANCHLELVR 88 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccC----CCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555553211110 01122344444555422 12346999998886666999999999999
Q ss_pred HHHhhhhhHHHHhhhcChhh---------hhhhhhhhh-------HhhhhHHHHHHHHHHHHHHhhhcCC-CcchH----
Q 018756 132 LLSSQVLDPLRAMITGAPLE---------DARHLAQRY-------SRMRQEAETQAVEVSKRQQRVREAP-NPENV---- 190 (351)
Q Consensus 132 ~~~~~~~~PL~~~~~~~~~e---------~~R~L~~dy-------~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~---- 190 (351)
.|. +.++||..+....-+. .++...+.+ .+-+..++..+.+.++ .+.+. +...+
T Consensus 89 ~L~-~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~----~~~~~~t~k~leK~~ 163 (269)
T cd07673 89 KLQ-ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLEQER----LKKEGATQREIEKAA 163 (269)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCHHHHHHHH
Confidence 998 5889999998533211 122222211 1112223333333322 11111 11212
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHH
Q 018756 191 AKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLR 246 (351)
Q Consensus 191 ~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~ 246 (351)
.|++.|...+...-..+......-...|..+-+.-|.+-..||.-|-+....|+..
T Consensus 164 ~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~ 219 (269)
T cd07673 164 VKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNS 219 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555544444433333334466777766666666567777777777777653
No 141
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.44 E-value=71 Score=30.84 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=38.9
Q ss_pred hhhhHHHhhhhccCCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 86 TKLSEDCCRYGAENNQNINE---NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 86 ~~l~e~~~kyg~e~~~~~~~---~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
.+|..-|.+|+.--. ..++ .+...+...+=.....++-.++.+..++..+|++||..+..
T Consensus 40 kkL~~L~Kky~~KK~-~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~ 102 (252)
T cd07675 40 KQLRNLVKKYCPKRS-SKDEEPRFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSH 102 (252)
T ss_pred HHHHHHHHHhccccC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355566677755332 1111 11223333444556777889999999999999999999985
No 142
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=74.81 E-value=80 Score=30.14 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
+|..|...+-.....++.....|...|..++.+||..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~ 99 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQ 99 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888777899999999999999999999999887
No 143
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.65 E-value=79 Score=30.01 Aligned_cols=144 Identities=20% Similarity=0.190 Sum_probs=77.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhH--------hhhhHHHHHHHHHHHH
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYS--------RMRQEAETQAVEVSKR 177 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~--------rlrqe~E~~~~e~~rr 177 (351)
..+.+++-.+|.-.....+.-.+=...+-+.|++||+.+.+ .+---|-|-.||+ ++.+..+... +|
T Consensus 87 ~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d--~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~----~k 160 (246)
T cd07597 87 GDINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLD--LLVSLRDLFERHEKLSLNNIQRLLKRIELNK----KK 160 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHH----HH
Confidence 34666777777776777777777778888999999998875 3333344444444 3333333333 33
Q ss_pred HHhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018756 178 QQRVREA--PNPENVAKLHAAEARMQELKANMAILGKEAAAALA----AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL 251 (351)
Q Consensus 178 q~k~re~--~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~----~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL 251 (351)
..+.+-. ..+..+++|.++-.+=.+....+..=+-.+...|. -+..-++ +....|..|+..+..||.....+=
T Consensus 161 l~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W 239 (246)
T cd07597 161 LESLRAKPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVW 239 (246)
T ss_pred HHHhhcCCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 13333566664443333222221111111111111 1222112 445678889999999998887776
Q ss_pred HHhHH
Q 018756 252 GDVEA 256 (351)
Q Consensus 252 ~~L~~ 256 (351)
..|..
T Consensus 240 ~~L~~ 244 (246)
T cd07597 240 ERLVP 244 (246)
T ss_pred HHhcc
Confidence 66543
No 144
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=73.21 E-value=85 Score=29.72 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=72.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhh-----------hh-------HhhhhHH
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQ-----------RY-------SRMRQEA 167 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~-----------dy-------~rlrqe~ 167 (351)
++|..+...+-.....|+.....|...|. .++.||..+...-.+. |+... .+ .|-+..+
T Consensus 56 gt~~~~w~~i~~~~e~~a~~H~~l~~~L~-~~~~~l~~~~~~~~k~--rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y 132 (261)
T cd07648 56 GTFAPLWLVLRVSTEKLSELHLQLVQKLQ-ELIKDVQKYGEEQHKK--HKKVKEEESGTAEAVQAIQTTTAALQKAKEAY 132 (261)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887888899999999999994 6888888876422221 22111 10 1122222
Q ss_pred HHHHHHHHHHHHhhhcCCCcc----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHH
Q 018756 168 ETQAVEVSKRQQRVREAPNPE----NVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNY 243 (351)
Q Consensus 168 E~~~~e~~rrq~k~re~~~~~----~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~y 243 (351)
+..+.+.++-+. ++..+. +..|++.|...+...-..+..+..+-...|+.+-++-|.+-..||.-|-+....|
T Consensus 133 ~~~c~e~e~~~~---~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y 209 (261)
T cd07648 133 HARCLELERLRR---ENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASY 209 (261)
T ss_pred HHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322110 110111 1123344444444444444444455566677666666665566777777777777
Q ss_pred HHH
Q 018756 244 HLR 246 (351)
Q Consensus 244 h~~ 246 (351)
+..
T Consensus 210 ~~~ 212 (261)
T cd07648 210 AEV 212 (261)
T ss_pred HHH
Confidence 643
No 145
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=3.3 Score=42.58 Aligned_cols=53 Identities=34% Similarity=0.409 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCCCccccCCCEEEEeeeCCCCeeEEE--ECCeeeEecCCceee
Q 018756 285 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 337 (351)
Q Consensus 285 ~~~ALydf~a~~~~ELsf~~GD~I~Vl~~~d~gWweG~--~~Gk~G~FPsnYVe~ 337 (351)
-..++++..|....|+.+++||.|-|--..=+|...|. ..++.|+||+-=|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 36789999999999999999999977643334445555 257889999966654
No 146
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=72.44 E-value=1e+02 Score=30.31 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=129.7
Q ss_pred HHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHhHHHhhcCcchhhhhhhhhHHHhhh
Q 018756 19 QQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRY 95 (351)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~ky 95 (351)
-|-++.+||-| +-.|==|-|.|+-+- ++-+|. |++..++|-..=+--+|.-..|||.+--.
T Consensus 109 kQillEklGk~-----~rTVD~ElEaQie~L-----------rd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadL 172 (341)
T KOG3876|consen 109 KQILLEKLGKG-----SRTVDLELEAQIEVL-----------RDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADL 172 (341)
T ss_pred HHHHHHHhcCC-----ccccCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888822 345545778776432 122232 67777777776666677777888877554
Q ss_pred hccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHH
Q 018756 96 GAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVS 175 (351)
Q Consensus 96 g~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~ 175 (351)
....++ +-.-.-.-.++++.+.+--+.|+..|. -||--.++++++-. ||--+-.+.|+.-|-|+.+-+.+++
T Consensus 173 s~K~~e------lq~eft~nseTqr~l~kngetLl~aln-fFIsSvnTl~nkTi-~DTL~Ti~qyEsARiEyDayR~Dle 244 (341)
T KOG3876|consen 173 SQKSPE------LQEEFTYNSETQRLLGKNGETLLGALN-FFISSVNTLVNKTI-EDTLMTIKQYESARIEYDAYRTDLE 244 (341)
T ss_pred hccCHH------HHHHhCcCHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhhhh-HHHHHHHHHhhhhhhhhhhhhhhHH
Confidence 443321 111111226788888888888888875 58889999999765 4445555667776666666666665
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH--hHHHHHHHHHHHHHHHHHHHHHH
Q 018756 176 KRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGD 253 (351)
Q Consensus 176 rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~--~~L~~lveae~~yh~~~~~IL~~ 253 (351)
.--..-++. .+ ...+..|.++|++-|+.+.-|-..+.--|.-+|+ -|+.| .||.-|-.|--.|+.=.+..|++
T Consensus 245 ~~~l~P~~~-~t--~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeE--NrIkVmh~QL~llhnAiaAYfsGNak~LE~ 319 (341)
T KOG3876|consen 245 ELTLGPRDA-LT--KNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEE--NRIKVMHKQLELLHNAIAAYFSGNAKQLEQ 319 (341)
T ss_pred HhcCCcccc-cc--ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 433333332 11 2467778888888888877777777777776665 23333 56777777888888655554444
No 147
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=70.31 E-value=3.9 Score=41.16 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=46.5
Q ss_pred EEEEecCCCC--CCCCCccccCCCEEEEeeeCCCCeeEEEECCeeeEecCCceeec
Q 018756 285 LAEAIHPFTA--ASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 338 (351)
Q Consensus 285 ~~~ALydf~a--~~~~ELsf~~GD~I~Vl~~~d~gWweG~~~Gk~G~FPsnYVe~i 338 (351)
.+++.-+|.+ ...++|-+..||+|.++.....|-|.|-++++.|-|+.-||..+
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 4556666654 56788999999999999999999999999999999999999875
No 148
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.01 E-value=1.1e+02 Score=28.68 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHhhhcChh---hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhc
Q 018756 110 KAAAIYGDARKHVEKEQEDFNRLLS---SQVLDPLRAMITGAPL---EDARHLAQRYSRMRQEAETQAVEVSKRQQRVRE 183 (351)
Q Consensus 110 ~a~~~~g~a~~~~~~~~~~l~~~~~---~~~~~PL~~~~~~~~~---e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re 183 (351)
.|+-.||+..+.|. ..+...++ .-+++||+.++..++. |.-|+++ +....+++...... -+.|.|+
T Consensus 63 ~al~~f~~~l~e~~---~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd----~~q~kyD~~L~r~~-~~sk~K~ 134 (214)
T cd07609 63 LALKRFGDGLKDFW---GGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFE----YYQRKYDSMLARYV-AQSKTKE 134 (214)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh-cCCCCCC
Confidence 58889999988777 44555554 7799999999997764 2222222 22222322222210 1122222
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHH
Q 018756 184 APNPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 184 ~~~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
| ..|+.+-..|.+.+..+
T Consensus 135 ---p---~~l~Eda~qL~e~Rk~Y 152 (214)
T cd07609 135 ---P---SSLREDAFQLFEARKAY 152 (214)
T ss_pred ---h---hhhhhHHHHHHHHHHHH
Confidence 2 46777777777777775
No 149
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=66.73 E-value=1.2e+02 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 018756 105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (351)
Q Consensus 105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 146 (351)
.|....+...+=+-...++..+..+..++..++++.|..|+.
T Consensus 60 ~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~ 101 (234)
T cd07686 60 VSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK 101 (234)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355556777777777888999999999999999999988865
No 150
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=65.77 E-value=1.3e+02 Score=29.07 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 143 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 143 (351)
++|..|.-.+-.....|++....|...|...+++|+++
T Consensus 60 GTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~ 97 (258)
T cd07681 60 GTLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA 97 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36878877777777999999999999999999999977
No 151
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=65.13 E-value=1.4e+02 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLR 142 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~ 142 (351)
++|-.|...+-.....|++....|...|...+++|++
T Consensus 60 Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r 96 (258)
T cd07680 60 GSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVK 96 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4687888887777799999999999999999999996
No 152
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=64.44 E-value=9.4 Score=40.10 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=33.0
Q ss_pred ccccCCCEEEEeeeCCCCeeEEEE-CCeeeEecCCceeec
Q 018756 300 LSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 338 (351)
Q Consensus 300 Lsf~~GD~I~Vl~~~d~gWweG~~-~Gk~G~FPsnYVe~i 338 (351)
-++..|+.|.|+...+.||+.... +|+.||+-..|+..-
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 367899999997655779999998 599999999999864
No 153
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.12 E-value=93 Score=30.70 Aligned_cols=57 Identities=32% Similarity=0.467 Sum_probs=36.4
Q ss_pred hhhhhHHHHhhhcChhhh-hhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhH-
Q 018756 135 SQVLDPLRAMITGAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGK- 212 (351)
Q Consensus 135 ~~~~~PL~~~~~~~~~e~-~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~k- 212 (351)
.|+|-||+. ||+ .|||.- |.||+ ..+|+.-+...+|||+-+..+-.
T Consensus 57 EQYLTPLQQ------KEV~iRHLka---------------------kLkes-----~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 57 EQYLTPLQQ------KEVCIRHLKA---------------------KLKES-----ENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHhcChHHH------HHHHHHHHHH---------------------HHHHH-----HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 477888764 565 688873 33332 35666667777777777666544
Q ss_pred HHHHHHHHHHH
Q 018756 213 EAAAALAAIEA 223 (351)
Q Consensus 213 ea~~am~~ve~ 223 (351)
|.+..-..||+
T Consensus 105 WIEEECHRVEA 115 (305)
T PF15290_consen 105 WIEEECHRVEA 115 (305)
T ss_pred HHHHHHHHHHH
Confidence 66666665665
No 154
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=60.88 E-value=9.3 Score=30.31 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred CccccCCCEEEEeeeC------CCCeeEEEE
Q 018756 299 ELSLGVGDYVVVRKVS------PSGWSEGEC 323 (351)
Q Consensus 299 ELsf~~GD~I~Vl~~~------d~gWweG~~ 323 (351)
-|+++.||.+.|-... +.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 4788999999876433 568999973
No 155
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=60.06 E-value=12 Score=35.01 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=31.1
Q ss_pred cccCCCEEEEeeeCCC-CeeEEEE-CCeeeEecCCceeec
Q 018756 301 SLGVGDYVVVRKVSPS-GWSEGEC-KGKAGWFPSANVEKR 338 (351)
Q Consensus 301 sf~~GD~I~Vl~~~d~-gWweG~~-~Gk~G~FPsnYVe~i 338 (351)
+++.|+.+.|+..... ||..... +|+.||||..++..-
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e 88 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSE 88 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccc
Confidence 5789999999866544 8999987 799999999887653
No 156
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.02 E-value=1.7e+02 Score=27.41 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 018756 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP 149 (351)
Q Consensus 107 ~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~ 149 (351)
.|..+...+-.....+++....|...+...|..||+.+..+..
T Consensus 59 ~~~~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~~~~~~ 101 (228)
T cd07650 59 VFQNPWLTIESETEFIAASHGELAQRIETDVEEPLRDFATSTE 101 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4556666677777999999999999999999999999998763
No 157
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=56.31 E-value=14 Score=27.01 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred cccCCCEEEEeeeCCCCeeEEEE
Q 018756 301 SLGVGDYVVVRKVSPSGWSEGEC 323 (351)
Q Consensus 301 sf~~GD~I~Vl~~~d~gWweG~~ 323 (351)
.|++|+.|.+....+.+||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 47899999999877889999985
No 158
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=55.59 E-value=1.8e+02 Score=27.31 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=78.5
Q ss_pred CchhHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhh-hhhhhhhHhhhhHHHHHHHHH
Q 018756 106 NILPKAAAI----------YGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDA-RHLAQRYSRMRQEAETQAVEV 174 (351)
Q Consensus 106 ~~~~~a~~~----------~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~-R~L~~dy~rlrqe~E~~~~e~ 174 (351)
..||+.++. ||.++..+++....+.. +...|..++..=.. +|++.. --+. +|.+.|..+|..++++
T Consensus 54 ~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~-~q~~f~~~~~~~~l-~pL~~~l~~~k-~i~k~RKkLe~rRLdy 130 (215)
T cd07593 54 EALGLVMINHGEEFPQDSEYGSCLSKLGRAHCKIGT-LQEEFADRLSDTFL-ANIERSLAEMK-EYHSARKKLESRRLAY 130 (215)
T ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 368887765 67788889998888877 68999999876555 333321 1343 8888899999999998
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018756 175 SKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG 252 (351)
Q Consensus 175 ~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~ 252 (351)
+-.+.|.+.+ +.+ . ..+..|...|...++.+.+ .+...+..+++.+-++-+....+++
T Consensus 131 D~~ksk~~ka-k~~--------~----------~~~eeElr~Ae~kfees~E-~a~~~M~~i~~~e~e~~~~L~~lv~ 188 (215)
T cd07593 131 DAALTKSQKA-KKE--------D----------SRLEEELRRAKAKYEESSE-DVEARMVAIKESEADQYRDLTDLLD 188 (215)
T ss_pred HHHHHHHHhc-ccc--------c----------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 8777775431 111 0 1123334444444444322 3455677777776666666655544
No 159
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=50.20 E-value=2.2e+02 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=20.0
Q ss_pred ecHHHHHHHHHHHH-HHhhhhchhhhhHHHHHHhHH
Q 018756 39 IDEVEMQRHQQLEK-LYRSTRGTKDFQRDLVKVAEV 73 (351)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~vr~~~~ 73 (351)
+||.=|..-..|=+ .-.=-++|+..||+||..-+|
T Consensus 6 v~e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~ 41 (200)
T smart00307 6 VDESILEAAKAITKAIAALVKAATNAQREIVAQGRG 41 (200)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45555543333322 222246899999999986444
No 160
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.11 E-value=5.5e+02 Score=30.62 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHhhhhchh
Q 018756 40 DEVEMQRHQQLEKLYRSTRGTK 61 (351)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~ 61 (351)
|+.--...|-|.|.-.+|.+|.
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677888877777653
No 161
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.68 E-value=2.8e+02 Score=26.47 Aligned_cols=39 Identities=5% Similarity=0.102 Sum_probs=30.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 145 (351)
++|..|...+-...-.|++..-.|...|. +.++|+..+.
T Consensus 56 Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~-~~~~~i~~~~ 94 (261)
T cd07674 56 GTFAPMWEVFRVSSDKLALCHLELMRKLN-DLIKDINRYG 94 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 36888888888888899988888888886 5557777663
No 162
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.62 E-value=2.9e+02 Score=26.34 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc------ChhhhhhhhhhhhHhhhhHHHHHHHHH
Q 018756 110 KAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG------APLEDARHLAQRYSRMRQEAETQAVEV 174 (351)
Q Consensus 110 ~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~------~~~e~~R~L~~dy~rlrqe~E~~~~e~ 174 (351)
.+...+=.-...++..+..+..++..+++.+|..|... -..++|..|..++.+.-++++.-.-.+
T Consensus 70 ~~W~~lL~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y 140 (241)
T cd07656 70 NCWNTLLVQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTY 140 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444448999999999999999999999988872 123568888877777666665544444
No 163
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=40.75 E-value=3.2e+02 Score=25.74 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=40.3
Q ss_pred cHHHHH-HHHHHHHHHhh-------hhchhhhhHHHHHHhHHHh--hcCcchhhhhhhhhHHHhhhhccCC
Q 018756 40 DEVEMQ-RHQQLEKLYRS-------TRGTKDFQRDLVKVAEVFT--AIGYKHIEAGTKLSEDCCRYGAENN 100 (351)
Q Consensus 40 ~~~~~~-~~~~~~~~~~~-------~~~~~~~q~~~vr~~~~~~--~~~~~q~E~~~~l~e~~~kyg~e~~ 100 (351)
-|+||. .|+.|++|+.= +|+.-.-||-.+-|++.|. .+|-++++-...++++..+++.=+.
T Consensus 7 ~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~ 77 (207)
T cd07634 7 HEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLI 77 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHH
Confidence 378887 68889887754 4555556677777777665 5566644433367788777776544
No 164
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=39.05 E-value=3.5e+02 Score=25.83 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhH
Q 018756 231 QRLVAMVEGEKNYHLRIAAILGDVE 255 (351)
Q Consensus 231 ~~L~~lveae~~yh~~~~~IL~~L~ 255 (351)
+.+..+++.+..||++++.-|+.+.
T Consensus 209 ~~m~~yL~~Qi~Fyq~i~~kLe~a~ 233 (237)
T PF10456_consen 209 SMMKTYLQQQIAFYQQIAEKLEQAL 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566699999999999888777654
No 165
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=37.57 E-value=3.6e+02 Score=25.51 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=53.2
Q ss_pred HhHHHhhcCcchhhh-------hhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 018756 70 VAEVFTAIGYKHIEA-------GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLR 142 (351)
Q Consensus 70 ~~~~~~~~~~~q~E~-------~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~ 142 (351)
+.+-||+.|.+.--. +..+.|++.|-|.-.. ++. +.-++|+++.+|.+....+...+...+--=..
T Consensus 21 ~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~----~s~---~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~ 93 (223)
T cd07605 21 VLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELAS----QSR---GSQELGEALKQIVDTHKSIEASLEQVAKAFHG 93 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333 3344455555554433 333 66789999999999888888777766522222
Q ss_pred Hhh---hcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHh
Q 018756 143 AMI---TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR 180 (351)
Q Consensus 143 ~~~---~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k 180 (351)
.++ .+.+.++-|-+..--++--+++-..+.+++|.+..
T Consensus 94 ~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~se 134 (223)
T cd07605 94 ELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSE 134 (223)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22333455555532233223444444454444433
No 166
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=37.13 E-value=3.4e+02 Score=25.08 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred HhHHHhhcCcch-------hhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018756 70 VAEVFTAIGYKH-------IEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS 134 (351)
Q Consensus 70 ~~~~~~~~~~~q-------~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~ 134 (351)
+.|-||+.|.+. ...+..+.|++.|-|.--+ ++ -| .-++|.++.+|.+....+...+.
T Consensus 11 ~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~----~s-~~--s~~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 11 AWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMAS----NS-RG--SKELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TS-SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CC-Cc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 4444455555555554322 32 34 55899999999977666654443
No 167
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=35.02 E-value=71 Score=23.74 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred cccCCCEEEEeeeC-CCCeeEEEECCeeeEecC
Q 018756 301 SLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPS 332 (351)
Q Consensus 301 sf~~GD~I~Vl~~~-d~gWweG~~~Gk~G~FPs 332 (351)
.+..|.-|.|++.. |..|...+...-.||+++
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 46788889888765 556999998888999974
No 168
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.24 E-value=6.3e+02 Score=27.32 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhH---HHHHHhHHHh---h
Q 018756 3 SLRRQASKLKEQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQR---DLVKVAEVFT---A 76 (351)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~---~~vr~~~~~~---~ 76 (351)
.+.++-..++++..+..+.+-+-+++.++ ..++=..=-+-..+|++...+. .++-++. +..+|+-|.. +
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p----~~l~~~ll~~~~~q~~~e~~~~-~~~~~~~~l~~~~~~i~~~~~~l~ 340 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLP----LLLIPNLLDSTKAQLQKEEQSQ-QNQLTQEELEERDKELLESLPKLA 340 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC----HhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566666666666667777777765544 2222222223456666665444 2232322 2346666655 7
Q ss_pred cCcchhhhhhhhhHHHhhhhc
Q 018756 77 IGYKHIEAGTKLSEDCCRYGA 97 (351)
Q Consensus 77 ~~~~q~E~~~~l~e~~~kyg~ 97 (351)
.|.++.+. |.+.+.+.+.
T Consensus 341 ~~~~~~~~---l~~~l~~~~~ 358 (650)
T TIGR03185 341 LPAEHVKE---IAAELAEIDK 358 (650)
T ss_pred CCHHHHHH---HHHHHHhhcc
Confidence 77777665 6666665554
No 169
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=34.19 E-value=1.4e+02 Score=26.89 Aligned_cols=48 Identities=15% Similarity=0.428 Sum_probs=36.9
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHHH
Q 018756 159 RYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANM 207 (351)
Q Consensus 159 dy~rlrqe~E~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~m 207 (351)
.|+||.-+++.+.-.++++.....+++ +.- ..||+.-|+||.+.+.-|
T Consensus 35 ~Yk~LKa~vdK~sKKLE~~K~~~~~s~~k~~-kkKieR~Ee~LK~~nRDl 83 (186)
T KOG3312|consen 35 KYKRLKAEVDKQSKKLEKKKEENGDSNDKSK-KKKIERVEEKLKNNNRDL 83 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhHH-HHHHHHHHHHHhccccch
Confidence 799999999999888888887777766 333 578888888887765543
No 170
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=33.81 E-value=3.3e+02 Score=23.91 Aligned_cols=64 Identities=8% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhh
Q 018756 116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRV 181 (351)
Q Consensus 116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~ 181 (351)
|.++..+.+.-..+ .....++.+.++..+. +|++.-...-..++++....+....++++-+.++
T Consensus 91 ~~~l~~~~~~~~~i-~~~~~~~~~~~~~~vi-~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~ 154 (229)
T PF03114_consen 91 GNALEKFGEAMQEI-EEARKELESQIESTVI-DPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKL 154 (229)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555 3444556666666555 3333222444455666666666666666655554
No 171
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.47 E-value=1.3e+02 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCccceecHHHHHH
Q 018756 2 ESLRRQASKLKEQVAKQQ--QAVIKQFSASGYERSDVMVIDEVEMQR 46 (351)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (351)
|+|||||-+|--|..-+= -.+|..=++||| .+|+..+..
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~------~~~~s~~~~ 48 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGY------DIDTSPLSG 48 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CCCcccccC
Confidence 799999999988876542 244444445555 356666554
No 172
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.05 E-value=5.7e+02 Score=27.54 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=40.8
Q ss_pred HHhhhcChh---hhhhhhhhhhHhhhhHHHHHHHHH---------HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018756 142 RAMITGAPL---EDARHLAQRYSRMRQEAETQAVEV---------SKRQQRVREAPNPENVAKLHAAEARMQELKANMAI 209 (351)
Q Consensus 142 ~~~~~~~~~---e~~R~L~~dy~rlrqe~E~~~~e~---------~rrq~k~re~~~~~~~~kL~~Ae~Kl~elk~~m~~ 209 (351)
+.++++..| +.+.++-.+|+.+++...+...++ .+|-.++++.. -.+..+|.++.+.|+++++.+..
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~-ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKD-IKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 347777777777777665444433 45555565542 12235888899999988887633
No 173
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=28.66 E-value=6.3e+02 Score=25.62 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhchhhhhHH--HHHHhHHHhhcCcchhhhhhhhhHHHhhhhccC
Q 018756 46 RHQQLEKLYRSTRGTKDFQRD--LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN 99 (351)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~q~~--~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~ 99 (351)
-|-+||||-+||---++.--+ -+| .-|-. .|+|.-.+|-+--.|||...
T Consensus 15 I~~eLEkLN~sTDdIN~~E~~Le~ar--~~Fre---tqv~~t~kl~el~Kk~~k~I 65 (426)
T KOG2008|consen 15 IQGELEKLNQSTDDINRRETELEDAR--QKFRE---TQVEATVKLDELVKKIGKAI 65 (426)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 588999999999876654322 222 12221 24444444555555555443
No 174
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.66 E-value=7.8e+02 Score=26.31 Aligned_cols=145 Identities=14% Similarity=0.218 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh------cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 018756 114 IYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT------GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNP 187 (351)
Q Consensus 114 ~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~------~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~ 187 (351)
..|++....+..+...+..+..+|-+==..+.+ +.=.-.+++.-.+-+.+=...|.....+........++ ..
T Consensus 54 l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~-e~ 132 (560)
T PF06160_consen 54 LTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLES-EE 132 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 346666666666666666665555332222111 11111122222222222222333333332222222111 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH-HHHHHHHHHHHhHHHhhh
Q 018756 188 ENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKN-YHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 188 ~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~-yh~~~~~IL~~L~~~l~s 260 (351)
++-.++...+.+|.+++..+..-....-.|+..+|.+...+ -.....|.+..-. -|-.+.+|+..+...+..
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i-e~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~ 205 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI-EEEFSEFEELTENGDYLEAREILEKLKEETDE 205 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 22346666778888887776555544445555555533221 1122223332222 356677777777766544
No 175
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.46 E-value=5.3e+02 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 018756 231 QRLVAMVEGEKNYHLRIAAILGDV 254 (351)
Q Consensus 231 ~~L~~lveae~~yh~~~~~IL~~L 254 (351)
+.+..+++.+..||+++++-|++.
T Consensus 180 ~~M~~yL~eQi~Fyq~v~~kle~a 203 (207)
T cd07669 180 QMMQHYLRQQIIFYQRVSQQLEKT 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457779999999999988877653
No 176
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.09 E-value=5.8e+02 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh
Q 018756 116 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED 152 (351)
Q Consensus 116 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~ 152 (351)
+.++.+|+++.+.+......+...-+ +.-+.|+++
T Consensus 79 s~als~laev~~~i~~~~~~qa~qd~--~~f~e~l~e 113 (234)
T cd07665 79 SRALSQLAEVEEKIEQLHQEQANNDF--FLLAELLAD 113 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHH
Confidence 34555666666666555555544332 233456654
No 177
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=25.63 E-value=6.8e+02 Score=24.93 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh----------------hhhhhhhhhhHhhhhHHH
Q 018756 105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL----------------EDARHLAQRYSRMRQEAE 168 (351)
Q Consensus 105 ~~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~----------------e~~R~L~~dy~rlrqe~E 168 (351)
-|.|+.+-..|..++...+.+-.+--.--+=|-|.-|+.-++++-. |.--.++--|.+.+.++|
T Consensus 58 ~SrF~~~~~q~sKaF~k~aqv~kdav~GP~INSL~~lQq~vn~aY~sEv~kL~~~~~ERn~~Er~~~iTt~~qq~ee~Le 137 (385)
T PF15642_consen 58 LSRFSDSKQQFSKAFNKTAQVSKDAVLGPKINSLTELQQKVNGAYGSEVIKLDRGRSERNHEERRKKITTSHQQHEEALE 137 (385)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhcCcccchHHHHHHHHHhhhhHHHHHHHHhHHHhhHHHHHhhhhhHHHHHHHHHH
Confidence 3667777777777777776643221111112223333333444433 223334444444444444
Q ss_pred HHHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHH
Q 018756 169 TQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN----MAILGKEAAAALAAIEA 223 (351)
Q Consensus 169 ~~~~e~~rrq~k~re~~-~~~~~~kL~~Ae~Kl~elk~~----m~~l~kea~~am~~ve~ 223 (351)
.....+++. .++ -+. +.+.-.++..--..|.|.-+. +..+...|.+|+.++++
T Consensus 138 ~k~~~is~q-L~~-~~~~r~EL~~~~~~l~~QL~Eeee~y~~alk~l~nPaq~AlEDFYd 195 (385)
T PF15642_consen 138 KKKEDISRQ-LQV-IPKHRVELKQKQDDLTKQLEEEEEIYKAALKRLTNPAQAALEDFYD 195 (385)
T ss_pred HHHHHHHHH-Hhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444444322 221 001 333333344344445554433 35555666777776665
No 178
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=25.13 E-value=1.4e+02 Score=24.57 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=25.6
Q ss_pred HHHHHHhHHHhhcCcchhhhhhhhhHHHhhhhccCCCCCCCCchhHHHHHH
Q 018756 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 115 (351)
Q Consensus 65 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kyg~e~~~~~~~~~~~~a~~~~ 115 (351)
.+|+.+.+.+-+-|+|+-|+ |.+||-..+ .|+.++-.+
T Consensus 40 ~kiI~AL~dyLV~G~srkea-------c~~~gV~~s------yfs~~L~rL 77 (91)
T PF03333_consen 40 EKIIAALRDYLVDGLSRKEA-------CERHGVNQS------YFSRALNRL 77 (91)
T ss_dssp HHHHHHHHHHHTT---HHHH-------HHHTT--HH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHH-------HHHhCCCHH------HHHHHHHHH
Confidence 46999999999999999887 888998755 576665433
No 179
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.04 E-value=6.3e+02 Score=24.40 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhhHhhhhHHHH
Q 018756 114 IYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEAET 169 (351)
Q Consensus 114 ~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~rlrqe~E~ 169 (351)
.+=.-...++..+..+..++..++++||..+...- -.+++..|..++.+.-++++.
T Consensus 74 ~~L~qt~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~k 135 (264)
T cd07654 74 AWLEGLDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSK 135 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344588999999999999999999998887522 235677776666665555443
No 180
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=23.18 E-value=1.2e+02 Score=30.18 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=38.4
Q ss_pred CCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHhHHHhhc
Q 018756 30 GYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAI 77 (351)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~ 77 (351)
+|--+..-+.||+-..|.-.|.|=--.-|--++--||||+|+|--+++
T Consensus 276 ~~ltsp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAV 323 (348)
T KOG3584|consen 276 SYLTSPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAV 323 (348)
T ss_pred ccccCCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHH
Confidence 454456678899999999999887777777778888999999987653
No 181
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=22.59 E-value=67 Score=32.76 Aligned_cols=44 Identities=32% Similarity=0.540 Sum_probs=31.6
Q ss_pred CCCCCccccCCCEEEEeeeCCCCeeEEEE-------CC----eeeEecCCc-eeecc
Q 018756 295 ASEKELSLGVGDYVVVRKVSPSGWSEGEC-------KG----KAGWFPSAN-VEKRQ 339 (351)
Q Consensus 295 ~~~~ELsf~~GD~I~Vl~~~d~gWweG~~-------~G----k~G~FPsnY-Ve~i~ 339 (351)
.++.-+++.+||.|.++.. -++|..|+. .| -+||||.++ ++...
T Consensus 329 ~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e 384 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCE 384 (414)
T ss_pred CCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhcccccccccccccc
Confidence 3455689999999987754 568999942 12 369999998 55544
No 182
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.02 E-value=1.2e+03 Score=26.40 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=34.6
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHhhhcCC-------------CcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018756 157 AQRYSRMRQEAETQAVEVSKRQQRVREAP-------------NPENVAKLHAAEARMQELKANMAILGKEAA 215 (351)
Q Consensus 157 ~~dy~rlrqe~E~~~~e~~rrq~k~re~~-------------~~~~~~kL~~Ae~Kl~elk~~m~~l~kea~ 215 (351)
...|++.|-++|....+..++..+.+-.+ +.++.....+|++.+..+...+..+.||-.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~ 151 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENS 151 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888776653211 111222233455666666665555555443
No 183
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.13 E-value=1.2e+03 Score=26.25 Aligned_cols=127 Identities=21% Similarity=0.279 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhcChh----hhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCC-----CcchHH
Q 018756 121 HVEKEQEDFNRLLSSQVLDPLRAMITGAPL----EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-----NPENVA 191 (351)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~----e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~-----~~~~~~ 191 (351)
-.-++||+|-+..| ++-+-|.+-+.+|.| |..|.|--.=++|..+--.+.+=+.+=++|.|++. +.+.+.
T Consensus 420 a~~kERDalr~e~k-slk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~ 498 (961)
T KOG4673|consen 420 ALTKERDALRREQK-SLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELIT 498 (961)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHH
Confidence 34567888877765 345566666666654 34555555555555554444444444455655532 111112
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 018756 192 KLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 192 kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~~yh~~~~~IL~~L~~~l~s 260 (351)
+|+.-+. -+|+.+. +| ..+|- +++=++.++.+++..+.+|..++...++.|.....+
T Consensus 499 ~L~sE~~---~lk~il~--~K------ee~Ek-~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 499 KLQSEEN---KLKSILR--DK------EETEK-LLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHH---HHHHHhh--hH------HHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2222222 2222210 11 12332 223357889999999999998887888888776654
No 184
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.67 E-value=1e+03 Score=25.31 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh------cChhhhhhhhhhhhHhhhhHHHHHHHHHHHHHHhhhcCCCc
Q 018756 114 IYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT------GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNP 187 (351)
Q Consensus 114 ~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~------~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rrq~k~re~~~~ 187 (351)
..|++....+..+...+..+...|-+==..+.+ +.=.-.||+.-.+-+.+=.++|....++..-.....++ ..
T Consensus 58 l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~-e~ 136 (569)
T PRK04778 58 LTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLES-EE 136 (569)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 346777777777777777666555432222211 11111133322233333333333333332222222221 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHhHHHHHHHHHH-HHHHHHHHHHHHhHHHhhh
Q 018756 188 ENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEK-NYHLRIAAILGDVEAEMVS 260 (351)
Q Consensus 188 ~~~~kL~~Ae~Kl~elk~~m~~l~kea~~am~~ve~qqq~lt~~~L~~lveae~-~yh~~~~~IL~~L~~~l~s 260 (351)
+|-..+...+.+|.+++..+..-.-..-.|...+|.+...+ -.....|.+.-- --|-.+.+++..+...+..
T Consensus 137 ~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~-e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~ 209 (569)
T PRK04778 137 KNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENL-EEEFSQFVELTESGDYVEAREILDQLEEELAA 209 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 23356667778888887776443333333444444432221 011222221111 1255666666666665443
No 185
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.65 E-value=7e+02 Score=23.28 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 018756 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG 147 (351)
Q Consensus 106 ~~~~~a~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~ 147 (351)
.+|..|...+-.....|++....|..+|.+.+ ++|..+...
T Consensus 56 gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v-~~l~~~~~~ 96 (239)
T cd07647 56 GTLKSSWDSLRKETENVANAHIQLAQSLREEA-EKLEEFREK 96 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 46999999998888999999999999999975 667766553
No 186
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.47 E-value=34 Score=38.30 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhhcChhhhhhhhhhhhHhhhhHHHHHHHHHHHH-HHhhhcCCCcchHHHHHHHHHHHHH
Q 018756 135 SQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKR-QQRVREAPNPENVAKLHAAEARMQE 202 (351)
Q Consensus 135 ~~~~~PL~~~~~~~~~e~~R~L~~dy~rlrqe~E~~~~e~~rr-q~k~re~~~~~~~~kL~~Ae~Kl~e 202 (351)
+.+||||+.|+.+-.++.+|. .|..||..-+|.+.--- +| -.+ -..|.+.+.+||++
T Consensus 547 skYiePL~rmi~k~~~~~~~~--~~l~kmk~ll~iL~~p~-~r~pl~--------tL~kce~~l~kl~~ 604 (799)
T PF09606_consen 547 SKYIEPLRRMINKMDKDEGRK--KDLSKMKSLLDILSNPS-KRCPLE--------TLQKCEIVLEKLKN 604 (799)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccHHHHHHHhcccCCCch--hHHHhHHHHHHHhcCCc-cCCchH--------HHHHHHHHHHHhhc
Confidence 479999999999888877676 46667655555333321 22 111 13566667777664
Done!