Query 018757
Match_columns 351
No_of_seqs 425 out of 2416
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 1.6E-35 3.5E-40 297.2 21.3 171 1-179 121-294 (408)
2 PRK11573 hypothetical protein; 100.0 2.3E-34 4.9E-39 289.3 21.0 171 1-179 113-294 (413)
3 COG1253 TlyC Hemolysins and re 100.0 3.6E-33 7.8E-38 281.9 20.9 172 1-179 131-311 (429)
4 COG4536 CorB Putative Mg2+ and 100.0 7.3E-31 1.6E-35 254.4 15.4 173 2-179 125-307 (423)
5 PRK15094 magnesium/cobalt effl 100.0 7.1E-29 1.5E-33 239.2 18.4 150 21-179 21-172 (292)
6 COG4535 CorC Putative Mg2+ and 99.9 1.1E-26 2.5E-31 213.4 11.8 152 19-179 19-172 (293)
7 KOG2118 Predicted membrane pro 99.8 1.7E-19 3.7E-24 185.1 12.1 299 1-308 133-442 (498)
8 TIGR00400 mgtE Mg2+ transporte 99.7 3.9E-17 8.4E-22 166.3 16.8 135 34-178 89-234 (449)
9 COG3448 CBS-domain-containing 99.7 6.1E-17 1.3E-21 153.6 14.5 137 34-178 202-354 (382)
10 COG2524 Predicted transcriptio 99.7 1.7E-17 3.7E-22 154.7 10.4 109 65-178 163-273 (294)
11 TIGR01302 IMP_dehydrog inosine 99.7 3.2E-16 7E-21 159.6 16.1 133 33-178 43-183 (450)
12 COG4109 Predicted transcriptio 99.6 2.2E-15 4.7E-20 146.0 12.1 114 61-178 170-288 (432)
13 PRK05567 inosine 5'-monophosph 99.6 3.4E-14 7.4E-19 146.1 16.9 132 33-178 50-187 (486)
14 PRK10892 D-arabinose 5-phospha 99.6 2.5E-14 5.4E-19 139.3 12.4 105 72-178 200-308 (326)
15 cd04603 CBS_pair_KefB_assoc Th 99.6 5.5E-14 1.2E-18 114.6 12.5 92 85-178 2-95 (111)
16 COG2239 MgtE Mg/Co/Ni transpor 99.5 1.1E-13 2.4E-18 140.4 15.6 117 56-178 114-235 (451)
17 cd04641 CBS_pair_28 The CBS do 99.5 9.8E-14 2.1E-18 114.2 12.2 92 85-178 2-104 (120)
18 cd04619 CBS_pair_6 The CBS dom 99.5 1.2E-13 2.6E-18 112.9 12.4 92 85-178 2-98 (114)
19 cd04605 CBS_pair_MET2_assoc Th 99.5 1.3E-13 2.8E-18 111.1 12.1 92 85-178 3-94 (110)
20 cd04630 CBS_pair_17 The CBS do 99.5 1.6E-13 3.5E-18 111.8 12.2 93 85-178 2-99 (114)
21 PRK11543 gutQ D-arabinose 5-ph 99.5 6.2E-14 1.3E-18 136.0 11.4 104 73-178 196-302 (321)
22 cd04618 CBS_pair_5 The CBS dom 99.5 1.7E-13 3.6E-18 110.6 11.8 80 85-178 2-81 (98)
23 cd04626 CBS_pair_13 The CBS do 99.5 1.5E-13 3.3E-18 111.0 11.6 92 85-178 2-96 (111)
24 cd04623 CBS_pair_10 The CBS do 99.5 2.2E-13 4.7E-18 109.6 12.4 92 85-178 2-98 (113)
25 cd04590 CBS_pair_CorC_HlyC_ass 99.5 2.1E-13 4.6E-18 110.0 11.8 92 85-178 2-95 (111)
26 cd04593 CBS_pair_EriC_assoc_ba 99.5 2E-13 4.4E-18 111.1 11.7 92 85-178 2-97 (115)
27 cd04596 CBS_pair_DRTGG_assoc T 99.5 3.4E-13 7.4E-18 108.8 12.3 90 85-178 3-92 (108)
28 cd04600 CBS_pair_HPP_assoc Thi 99.5 3E-13 6.4E-18 111.2 11.9 92 85-178 3-108 (124)
29 cd04624 CBS_pair_11 The CBS do 99.5 3.7E-13 8E-18 108.7 11.8 92 85-178 2-96 (112)
30 cd04639 CBS_pair_26 The CBS do 99.5 3.9E-13 8.4E-18 108.4 11.5 92 85-178 2-95 (111)
31 COG3620 Predicted transcriptio 99.5 2.1E-13 4.5E-18 119.5 10.0 119 53-178 39-167 (187)
32 cd04642 CBS_pair_29 The CBS do 99.5 4.8E-13 1E-17 111.2 11.7 92 85-178 2-110 (126)
33 cd04617 CBS_pair_4 The CBS dom 99.5 4.8E-13 1E-17 110.0 11.6 92 85-178 2-99 (118)
34 cd04631 CBS_pair_18 The CBS do 99.5 5.3E-13 1.2E-17 109.9 11.8 93 85-178 2-109 (125)
35 cd04627 CBS_pair_14 The CBS do 99.5 4.2E-13 9.2E-18 110.9 11.1 93 85-178 2-107 (123)
36 cd04607 CBS_pair_NTP_transfera 99.5 7.4E-13 1.6E-17 107.5 12.3 91 86-178 4-97 (113)
37 cd04621 CBS_pair_8 The CBS dom 99.5 5.1E-13 1.1E-17 113.6 11.8 92 85-178 2-120 (135)
38 cd04643 CBS_pair_30 The CBS do 99.5 6.6E-13 1.4E-17 107.7 11.9 90 85-178 2-100 (116)
39 cd04803 CBS_pair_15 The CBS do 99.5 7.1E-13 1.5E-17 108.7 12.2 92 85-178 2-106 (122)
40 PRK07807 inosine 5-monophospha 99.5 6.6E-13 1.4E-17 136.2 13.8 102 71-178 86-187 (479)
41 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.2E-12 2.6E-17 104.3 11.8 89 85-178 2-90 (105)
42 cd04801 CBS_pair_M50_like This 99.4 5.3E-13 1.1E-17 108.5 9.9 92 85-178 2-98 (114)
43 cd04635 CBS_pair_22 The CBS do 99.4 1.1E-12 2.5E-17 107.4 12.0 92 85-178 2-106 (122)
44 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1.5E-12 3.1E-17 104.7 12.2 91 85-178 2-95 (111)
45 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.6E-12 3.5E-17 103.9 12.3 89 85-178 2-90 (106)
46 cd04632 CBS_pair_19 The CBS do 99.4 1.3E-12 2.9E-17 108.4 12.3 91 85-177 2-109 (128)
47 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1.5E-12 3.2E-17 104.6 12.1 91 85-178 2-95 (111)
48 cd04588 CBS_pair_CAP-ED_DUF294 99.4 1.7E-12 3.7E-17 104.5 12.3 91 85-178 2-94 (110)
49 cd04595 CBS_pair_DHH_polyA_Pol 99.4 1.5E-12 3.4E-17 104.9 12.1 91 85-178 3-95 (110)
50 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 1.7E-12 3.7E-17 103.9 12.2 91 85-178 3-93 (109)
51 cd04636 CBS_pair_23 The CBS do 99.4 1.2E-12 2.6E-17 109.7 11.7 92 85-178 2-117 (132)
52 cd04629 CBS_pair_16 The CBS do 99.4 1E-12 2.2E-17 106.3 10.8 92 85-178 2-99 (114)
53 PRK01862 putative voltage-gate 99.4 7.2E-13 1.6E-17 138.7 12.5 104 71-178 444-551 (574)
54 cd04640 CBS_pair_27 The CBS do 99.4 1.2E-12 2.6E-17 109.0 11.4 92 85-178 2-109 (126)
55 cd04589 CBS_pair_CAP-ED_DUF294 99.4 1.7E-12 3.8E-17 104.8 12.0 91 85-178 2-96 (111)
56 cd04608 CBS_pair_PALP_assoc Th 99.4 3.7E-13 8E-18 112.7 8.1 82 85-168 3-88 (124)
57 cd04601 CBS_pair_IMPDH This cd 99.4 1.9E-12 4.2E-17 103.8 11.9 91 85-178 3-94 (110)
58 cd04800 CBS_pair_CAP-ED_DUF294 99.4 2.1E-12 4.6E-17 104.1 12.1 91 85-178 2-96 (111)
59 cd04615 CBS_pair_2 The CBS dom 99.4 2.1E-12 4.6E-17 104.4 12.0 91 86-178 3-97 (113)
60 cd04594 CBS_pair_EriC_assoc_ar 99.4 2.5E-12 5.5E-17 103.3 12.1 86 87-178 4-89 (104)
61 cd04586 CBS_pair_BON_assoc Thi 99.4 1.3E-12 2.8E-17 109.8 10.9 92 85-178 3-120 (135)
62 cd04610 CBS_pair_ParBc_assoc T 99.4 3.3E-12 7.1E-17 102.1 12.5 89 85-178 3-91 (107)
63 cd04606 CBS_pair_Mg_transporte 99.4 1.8E-12 3.9E-17 104.7 11.1 86 89-178 2-92 (109)
64 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2.5E-12 5.5E-17 103.5 11.6 92 85-178 2-97 (114)
65 cd04585 CBS_pair_ACT_assoc2 Th 99.4 2.8E-12 6E-17 104.3 11.9 91 85-178 2-106 (122)
66 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 2.5E-12 5.3E-17 103.8 11.2 92 85-178 3-98 (114)
67 cd04602 CBS_pair_IMPDH_2 This 99.4 2.9E-12 6.4E-17 104.5 11.6 92 85-178 3-98 (114)
68 cd04587 CBS_pair_CAP-ED_DUF294 99.4 2.8E-12 6E-17 103.6 11.3 91 85-178 2-97 (113)
69 PLN02274 inosine-5'-monophosph 99.4 4.5E-12 9.7E-17 130.9 15.6 133 33-178 63-204 (505)
70 cd04614 CBS_pair_1 The CBS dom 99.4 3.3E-12 7.1E-17 102.3 11.4 79 85-178 2-80 (96)
71 cd04620 CBS_pair_7 The CBS dom 99.4 4.1E-12 8.8E-17 103.3 11.6 91 85-178 2-99 (115)
72 cd04637 CBS_pair_24 The CBS do 99.4 3.5E-12 7.5E-17 104.7 11.2 91 85-178 2-106 (122)
73 cd04638 CBS_pair_25 The CBS do 99.4 8.6E-12 1.9E-16 100.0 12.9 90 85-178 2-91 (106)
74 cd04802 CBS_pair_3 The CBS dom 99.4 6.2E-12 1.3E-16 101.5 12.0 91 85-178 2-97 (112)
75 cd04625 CBS_pair_12 The CBS do 99.4 7.2E-12 1.6E-16 101.1 12.0 91 85-178 2-97 (112)
76 TIGR01137 cysta_beta cystathio 99.4 3.4E-12 7.3E-17 129.6 12.4 101 71-178 332-436 (454)
77 cd04591 CBS_pair_EriC_assoc_eu 99.4 4.6E-12 9.9E-17 102.9 10.8 87 84-178 2-90 (105)
78 PRK07107 inosine 5-monophospha 99.4 3.1E-12 6.8E-17 131.9 12.2 112 59-178 87-202 (502)
79 cd04622 CBS_pair_9 The CBS dom 99.4 1E-11 2.2E-16 100.3 12.4 91 85-178 2-97 (113)
80 cd04584 CBS_pair_ACT_assoc Thi 99.4 8E-12 1.7E-16 102.0 11.9 92 85-178 2-106 (121)
81 cd04633 CBS_pair_20 The CBS do 99.4 6.2E-12 1.3E-16 102.9 10.9 91 85-178 2-106 (121)
82 PTZ00314 inosine-5'-monophosph 99.4 8.3E-12 1.8E-16 128.7 13.9 133 33-178 59-200 (495)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 1.1E-11 2.3E-16 99.2 11.5 89 85-178 2-94 (110)
84 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.1E-11 2.5E-16 127.0 13.6 101 71-178 85-185 (475)
85 cd02205 CBS_pair The CBS domai 99.3 2.4E-11 5.2E-16 96.0 12.0 92 85-178 2-97 (113)
86 COG0517 FOG: CBS domain [Gener 99.3 2.3E-11 5E-16 98.5 12.1 97 77-178 2-102 (117)
87 TIGR00393 kpsF KpsF/GutQ famil 99.3 9.9E-12 2.1E-16 117.3 10.3 102 74-178 155-259 (268)
88 cd04634 CBS_pair_21 The CBS do 99.3 2.3E-11 5E-16 104.0 11.5 91 85-178 2-128 (143)
89 cd04598 CBS_pair_GGDEF_assoc T 99.3 2.7E-11 6E-16 98.7 10.8 91 85-178 2-103 (119)
90 COG2905 Predicted signal-trans 99.2 2.6E-11 5.6E-16 123.9 9.3 104 71-178 146-253 (610)
91 cd04592 CBS_pair_EriC_assoc_eu 99.1 7.6E-10 1.7E-14 94.6 9.0 92 85-178 2-117 (133)
92 PRK14869 putative manganese-de 99.1 1.7E-09 3.7E-14 112.7 13.5 56 73-132 67-122 (546)
93 PF00571 CBS: CBS domain CBS d 98.8 1.6E-08 3.5E-13 73.0 7.4 38 141-178 1-38 (57)
94 PF00571 CBS: CBS domain CBS d 98.7 1.6E-08 3.4E-13 73.1 4.9 55 76-134 1-55 (57)
95 PRK10070 glycine betaine trans 98.7 3.2E-07 6.9E-12 92.6 13.5 101 74-178 274-375 (400)
96 KOG1764 5'-AMP-activated prote 98.6 2E-07 4.4E-12 93.5 11.3 92 85-178 238-341 (381)
97 TIGR01186 proV glycine betaine 98.5 1.6E-06 3.5E-11 86.5 14.0 88 87-178 253-340 (363)
98 KOG2550 IMP dehydrogenase/GMP 98.5 4.8E-07 1E-11 90.0 8.4 137 33-178 71-210 (503)
99 KOG0474 Cl- channel CLC-7 and 98.3 7E-07 1.5E-11 92.7 6.0 105 71-178 579-729 (762)
100 TIGR00400 mgtE Mg2+ transporte 98.1 2.4E-06 5.2E-11 87.4 4.3 99 72-176 193-291 (449)
101 cd04603 CBS_pair_KefB_assoc Th 98.0 1.1E-05 2.4E-10 65.3 5.7 56 73-132 55-110 (111)
102 cd04604 CBS_pair_KpsF_GutQ_ass 98.0 1.9E-05 4.1E-10 63.3 6.4 60 69-132 54-113 (114)
103 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.1E-05 4.6E-10 64.7 6.5 55 74-132 58-112 (113)
104 COG2524 Predicted transcriptio 97.9 2E-05 4.4E-10 74.5 6.0 41 138-178 171-211 (294)
105 cd04801 CBS_pair_M50_like This 97.9 2.4E-05 5.3E-10 63.1 5.4 58 73-132 56-113 (114)
106 PRK07107 inosine 5-monophospha 97.8 7.7E-05 1.7E-09 77.5 9.7 101 71-175 158-260 (502)
107 cd04617 CBS_pair_4 The CBS dom 97.8 3.7E-05 8.1E-10 62.8 5.9 61 71-132 55-117 (118)
108 cd04619 CBS_pair_6 The CBS dom 97.8 3.6E-05 7.8E-10 62.5 5.6 57 72-132 57-113 (114)
109 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.3E-05 1.1E-09 62.4 6.5 40 139-178 58-97 (113)
110 PRK14869 putative manganese-de 97.8 3.5E-05 7.6E-10 80.5 5.9 104 72-178 244-376 (546)
111 cd04607 CBS_pair_NTP_transfera 97.8 6.1E-05 1.3E-09 60.7 6.0 56 73-132 57-112 (113)
112 cd04620 CBS_pair_7 The CBS dom 97.7 6.9E-05 1.5E-09 60.4 6.1 57 72-132 56-114 (115)
113 cd04618 CBS_pair_5 The CBS dom 97.7 7.1E-05 1.5E-09 60.0 5.7 46 86-132 52-97 (98)
114 cd04585 CBS_pair_ACT_assoc2 Th 97.7 7.1E-05 1.5E-09 60.4 5.6 58 71-132 64-121 (122)
115 cd04600 CBS_pair_HPP_assoc Thi 97.7 7.5E-05 1.6E-09 60.9 5.7 59 71-133 66-124 (124)
116 KOG1764 5'-AMP-activated prote 97.7 0.00024 5.1E-09 71.5 10.3 121 57-178 133-268 (381)
117 cd04587 CBS_pair_CAP-ED_DUF294 97.7 8.7E-05 1.9E-09 59.4 5.4 55 74-132 58-112 (113)
118 cd04630 CBS_pair_17 The CBS do 97.6 9.8E-05 2.1E-09 59.7 5.6 57 72-133 58-114 (114)
119 cd04582 CBS_pair_ABC_OpuCA_ass 97.6 0.00016 3.5E-09 57.3 6.6 54 75-132 52-105 (106)
120 cd04610 CBS_pair_ParBc_assoc T 97.6 0.00012 2.5E-09 58.1 5.7 56 73-132 51-106 (107)
121 cd04640 CBS_pair_27 The CBS do 97.6 7.1E-05 1.5E-09 61.9 4.3 60 72-132 62-125 (126)
122 PRK07807 inosine 5-monophospha 97.6 0.00018 3.9E-09 74.4 8.2 96 74-178 148-247 (479)
123 cd04596 CBS_pair_DRTGG_assoc T 97.6 0.00012 2.6E-09 58.5 5.6 57 72-132 51-107 (108)
124 COG3448 CBS-domain-containing 97.6 6.9E-05 1.5E-09 72.3 4.7 41 138-178 244-284 (382)
125 cd04625 CBS_pair_12 The CBS do 97.6 0.00012 2.6E-09 58.6 5.5 55 73-132 57-111 (112)
126 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 0.00012 2.7E-09 58.3 5.5 57 73-132 57-113 (114)
127 cd04627 CBS_pair_14 The CBS do 97.6 0.00015 3.2E-09 59.6 5.9 52 76-131 70-121 (123)
128 cd04623 CBS_pair_10 The CBS do 97.6 0.00014 3.1E-09 57.9 5.7 55 73-132 58-112 (113)
129 COG3620 Predicted transcriptio 97.6 7.2E-05 1.6E-09 66.3 4.1 40 139-178 65-104 (187)
130 cd04593 CBS_pair_EriC_assoc_ba 97.6 0.00017 3.7E-09 58.2 6.0 58 73-133 57-115 (115)
131 cd04615 CBS_pair_2 The CBS dom 97.6 0.00016 3.5E-09 57.9 5.8 58 71-132 55-112 (113)
132 cd04622 CBS_pair_9 The CBS dom 97.6 0.00016 3.6E-09 57.8 5.8 56 73-132 57-112 (113)
133 PRK10892 D-arabinose 5-phospha 97.6 0.00012 2.6E-09 71.4 5.8 58 71-133 266-323 (326)
134 PRK05567 inosine 5'-monophosph 97.5 0.00027 5.9E-09 73.2 8.4 100 73-178 146-248 (486)
135 cd04626 CBS_pair_13 The CBS do 97.5 0.00019 4.2E-09 57.4 5.7 55 73-132 56-110 (111)
136 PRK11543 gutQ D-arabinose 5-ph 97.5 0.00018 3.9E-09 69.8 6.6 57 73-133 262-318 (321)
137 cd04595 CBS_pair_DHH_polyA_Pol 97.5 0.00021 4.6E-09 57.1 6.0 56 72-132 54-109 (110)
138 cd04631 CBS_pair_18 The CBS do 97.5 0.00017 3.7E-09 58.9 5.4 58 72-133 68-125 (125)
139 KOG0475 Cl- channel CLC-3 and 97.5 0.00038 8.2E-09 72.9 8.8 102 76-178 545-678 (696)
140 cd04586 CBS_pair_BON_assoc Thi 97.5 0.00018 3.8E-09 60.2 5.3 58 71-133 78-135 (135)
141 cd04606 CBS_pair_Mg_transporte 97.5 0.00021 4.5E-09 57.3 5.5 57 73-133 52-108 (109)
142 cd04612 CBS_pair_SpoIVFB_EriC_ 97.5 0.00027 5.9E-09 56.2 6.1 55 74-132 56-110 (111)
143 cd04641 CBS_pair_28 The CBS do 97.5 0.00024 5.3E-09 58.0 5.9 52 77-132 68-119 (120)
144 COG0517 FOG: CBS domain [Gener 97.5 0.00041 8.9E-09 55.7 7.2 53 75-131 63-117 (117)
145 cd04635 CBS_pair_22 The CBS do 97.5 0.00021 4.5E-09 58.1 5.4 58 72-133 65-122 (122)
146 TIGR01303 IMP_DH_rel_1 IMP deh 97.5 0.00044 9.5E-09 71.5 9.0 96 74-178 146-245 (475)
147 PTZ00314 inosine-5'-monophosph 97.5 0.00041 8.9E-09 72.1 8.7 61 72-134 157-217 (495)
148 cd04621 CBS_pair_8 The CBS dom 97.5 0.00024 5.2E-09 60.1 5.8 56 72-132 79-134 (135)
149 PLN02274 inosine-5'-monophosph 97.5 0.00015 3.3E-09 75.4 5.5 104 72-178 161-268 (505)
150 cd04803 CBS_pair_15 The CBS do 97.5 0.00027 5.9E-09 57.4 5.9 57 72-132 65-121 (122)
151 cd04633 CBS_pair_20 The CBS do 97.5 0.00019 4.2E-09 58.2 4.9 57 71-132 64-120 (121)
152 smart00116 CBS Domain in cysta 97.4 0.00043 9.3E-09 45.9 5.9 31 148-178 1-31 (49)
153 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00022 4.7E-09 57.7 5.2 58 73-132 56-113 (114)
154 cd04802 CBS_pair_3 The CBS dom 97.4 0.00028 6.1E-09 56.4 5.7 56 72-132 56-111 (112)
155 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.00026 5.6E-09 57.4 5.4 57 71-132 64-120 (121)
156 cd04636 CBS_pair_23 The CBS do 97.4 0.00026 5.7E-09 58.9 5.5 55 73-132 77-131 (132)
157 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00033 7.1E-09 55.5 5.8 55 74-132 54-108 (109)
158 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00035 7.6E-09 55.6 5.9 57 72-132 54-110 (111)
159 cd04601 CBS_pair_IMPDH This cd 97.4 0.00033 7.1E-09 55.6 5.7 56 73-132 53-109 (110)
160 cd04643 CBS_pair_30 The CBS do 97.4 0.00022 4.7E-09 57.3 4.6 56 72-133 61-116 (116)
161 cd04594 CBS_pair_EriC_assoc_ar 97.4 0.00039 8.5E-09 55.4 6.0 54 74-132 50-103 (104)
162 cd04589 CBS_pair_CAP-ED_DUF294 97.4 0.00036 7.8E-09 55.8 5.8 56 72-132 55-110 (111)
163 cd04629 CBS_pair_16 The CBS do 97.4 0.00029 6.3E-09 56.4 5.1 55 73-132 59-113 (114)
164 cd04639 CBS_pair_26 The CBS do 97.4 0.00034 7.4E-09 55.9 5.3 56 73-132 55-110 (111)
165 cd04599 CBS_pair_GGDEF_assoc2 97.4 0.00038 8.2E-09 54.9 5.4 55 73-132 50-104 (105)
166 cd04614 CBS_pair_1 The CBS dom 97.4 0.00041 8.9E-09 55.1 5.7 46 86-133 51-96 (96)
167 cd04624 CBS_pair_11 The CBS do 97.3 0.00066 1.4E-08 54.3 6.6 56 73-132 56-111 (112)
168 cd04592 CBS_pair_EriC_assoc_eu 97.3 0.00093 2E-08 56.9 7.4 31 148-178 2-32 (133)
169 cd04637 CBS_pair_24 The CBS do 97.3 0.00043 9.2E-09 56.4 5.1 55 74-132 67-121 (122)
170 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.00051 1.1E-08 54.8 5.5 55 73-132 56-110 (111)
171 smart00116 CBS Domain in cysta 97.3 0.00056 1.2E-08 45.3 4.8 46 86-133 2-47 (49)
172 cd04642 CBS_pair_29 The CBS do 97.3 0.00067 1.4E-08 56.0 6.1 52 77-132 74-125 (126)
173 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00096 2.1E-08 53.1 6.8 54 75-132 56-109 (110)
174 cd04632 CBS_pair_19 The CBS do 97.2 0.00053 1.2E-08 56.5 5.4 58 72-132 69-127 (128)
175 cd04588 CBS_pair_CAP-ED_DUF294 97.2 0.00083 1.8E-08 53.5 5.8 55 74-132 55-109 (110)
176 cd04590 CBS_pair_CorC_HlyC_ass 97.2 0.00074 1.6E-08 53.9 5.2 54 74-132 57-110 (111)
177 TIGR03415 ABC_choXWV_ATP choli 97.2 0.0017 3.8E-08 65.3 9.0 93 70-178 270-363 (382)
178 cd04608 CBS_pair_PALP_assoc Th 97.1 0.0019 4.2E-08 53.6 7.8 32 147-178 2-33 (124)
179 TIGR01137 cysta_beta cystathio 97.1 0.0014 3E-08 66.7 7.8 41 138-178 334-374 (454)
180 cd04591 CBS_pair_EriC_assoc_eu 97.0 0.0013 2.8E-08 53.0 5.6 49 79-132 56-104 (105)
181 cd04598 CBS_pair_GGDEF_assoc T 97.0 0.0013 2.8E-08 53.2 4.9 57 72-132 59-118 (119)
182 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0021 4.5E-08 60.6 6.7 40 139-178 155-195 (268)
183 COG4175 ProV ABC-type proline/ 96.9 0.0029 6.3E-08 62.2 7.5 104 61-178 261-365 (386)
184 PRK15094 magnesium/cobalt effl 96.9 0.0018 4E-08 62.8 6.2 86 74-165 133-227 (292)
185 cd04634 CBS_pair_21 The CBS do 96.9 0.0017 3.6E-08 55.2 5.3 56 72-132 87-142 (143)
186 PRK01862 putative voltage-gate 96.8 0.0019 4.1E-08 68.1 6.4 59 73-134 511-570 (574)
187 COG2905 Predicted signal-trans 96.8 0.0021 4.5E-08 66.8 6.3 76 53-135 192-270 (610)
188 cd02205 CBS_pair The CBS domai 96.8 0.0049 1.1E-07 48.0 6.7 53 76-132 60-112 (113)
189 cd04638 CBS_pair_25 The CBS do 96.7 0.0031 6.8E-08 50.0 5.4 54 74-132 52-105 (106)
190 cd04609 CBS_pair_PALP_assoc2 T 96.7 0.0026 5.6E-08 50.3 4.7 54 73-132 56-109 (110)
191 TIGR01302 IMP_dehydrog inosine 96.7 0.0026 5.6E-08 65.3 5.8 59 73-134 142-200 (450)
192 TIGR03520 GldE gliding motilit 96.6 0.0069 1.5E-07 61.5 8.0 90 73-167 254-350 (408)
193 COG2239 MgtE Mg/Co/Ni transpor 95.6 0.013 2.8E-07 60.3 4.4 61 70-134 192-252 (451)
194 COG4109 Predicted transcriptio 95.6 0.015 3.3E-07 57.6 4.5 61 71-135 246-306 (432)
195 KOG2550 IMP dehydrogenase/GMP 94.7 0.031 6.8E-07 56.4 3.8 112 56-178 157-271 (503)
196 TIGR01186 proV glycine betaine 94.6 0.068 1.5E-06 53.5 6.1 57 74-135 302-358 (363)
197 PF01595 DUF21: Domain of unkn 93.6 0.037 7.9E-07 49.0 1.7 27 1-27 122-148 (183)
198 PRK11573 hypothetical protein; 93.5 0.22 4.8E-06 50.7 7.4 78 85-165 263-349 (413)
199 PRK10070 glycine betaine trans 92.9 0.2 4.3E-06 50.9 5.9 58 73-135 336-393 (400)
200 COG1253 TlyC Hemolysins and re 89.1 1.8 3.9E-05 44.2 8.7 79 85-166 280-367 (429)
201 COG1125 OpuBA ABC-type proline 88.3 1.6 3.5E-05 42.2 7.0 68 109-178 204-292 (309)
202 COG4536 CorB Putative Mg2+ and 83.1 2.5 5.4E-05 42.7 5.7 59 74-134 265-323 (423)
203 KOG0476 Cl- channel CLC-2 and 78.7 5.3 0.00011 43.7 6.7 41 138-178 587-627 (931)
204 KOG0474 Cl- channel CLC-7 and 76.7 3.1 6.8E-05 44.5 4.3 54 76-133 692-745 (762)
205 TIGR03415 ABC_choXWV_ATP choli 73.6 4.1 8.9E-05 41.2 4.2 46 85-134 334-379 (382)
206 KOG0476 Cl- channel CLC-2 and 56.7 8 0.00017 42.4 2.5 59 73-134 587-646 (931)
207 COG1125 OpuBA ABC-type proline 55.8 18 0.00038 35.3 4.5 60 71-132 246-307 (309)
208 KOG0475 Cl- channel CLC-3 and 51.0 23 0.00049 38.2 4.7 53 76-133 641-693 (696)
209 COG4535 CorC Putative Mg2+ and 50.4 44 0.00096 32.1 6.1 87 74-166 133-228 (293)
210 COG4175 ProV ABC-type proline/ 47.2 21 0.00046 35.7 3.6 48 85-135 336-383 (386)
211 COG2216 KdpB High-affinity K+ 33.5 50 0.0011 35.1 4.0 36 95-133 415-450 (681)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1.6e-35 Score=297.25 Aligned_cols=171 Identities=27% Similarity=0.489 Sum_probs=151.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccc
Q 018757 1 MAPIVRVLLCLFFPISYPISKILDLM---LGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAK 77 (351)
Q Consensus 1 ~Ap~l~~~~~i~~Plv~pls~ll~~l---lg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~ 77 (351)
+|||+++++++|||++|+++++++++ +|.+. ..+|++||+.+++. +.++| +.++|++||+++|+|++++|+
T Consensus 121 ~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~ 194 (408)
T TIGR03520 121 MAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTK 194 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEee
Confidence 47999999999999999999987765 45443 45899999999984 34456 689999999999999999999
Q ss_pred cccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCC
Q 018757 78 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMP 157 (351)
Q Consensus 78 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~ 157 (351)
|+||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|+.||++........++.++ ++++.+|+++++
T Consensus 195 diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~ 272 (408)
T TIGR03520 195 QVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKK 272 (408)
T ss_pred eeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCc
Confidence 9999999999999999999 99999999999999999987789999999999986543333467887 578899999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecC
Q 018757 158 LYDILNEFQKGHSHIAVVYKDL 179 (351)
Q Consensus 158 L~daL~~m~~~~~~~apVVDe~ 179 (351)
+.++++.|++++.|+++|+|+|
T Consensus 273 l~~ll~~m~~~~~~~aiVvDE~ 294 (408)
T TIGR03520 273 LDDLLRDFQEKKNHLAIVVDEY 294 (408)
T ss_pred HHHHHHHHHhcCceEEEEEcCC
Confidence 9999999999999999999994
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=289.29 Aligned_cols=171 Identities=19% Similarity=0.354 Sum_probs=148.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---hCCCC----CCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcc
Q 018757 1 MAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTE 73 (351)
Q Consensus 1 ~Ap~l~~~~~i~~Plv~pls~ll~~l---lg~~~----~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d 73 (351)
+||++++++++|+|++|+++++.+.+ +|.+. ...+|++||+.+++. +.+ .++++|++||+++|+|++
T Consensus 113 ~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~----~~~--~l~~~e~~mi~~vl~l~~ 186 (413)
T PRK11573 113 SSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHE----SRS--QISRRNQDMLLSVLDLEK 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHH----Hhh--hcCHHHHHHHHHHhccCC
Confidence 36899999999999999998877654 56542 246899999999984 222 599999999999999999
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-C---cchhhhhccCC
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRI 149 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-~---~~V~dIM~r~v 149 (351)
.+|++|||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|+.||++.....+ . ..+.++ ++++
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~ 264 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEI 264 (413)
T ss_pred CChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCC
Confidence 99999999999999999999999 9999999999999999998889999999999998643321 1 224455 6899
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKDL 179 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe~ 179 (351)
.+||+++++.++|+.|++++.|+|+|+|||
T Consensus 265 ~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 265 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred eEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 999999999999999999999999999995
No 3
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=281.87 Aligned_cols=172 Identities=33% Similarity=0.615 Sum_probs=151.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh---CCC----CCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcc
Q 018757 1 MAPIVRVLLCLFFPISYPISKILDLML---GKG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTE 73 (351)
Q Consensus 1 ~Ap~l~~~~~i~~Plv~pls~ll~~ll---g~~----~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d 73 (351)
+||++++++++|+|++|++++++++++ |.. +....+.++++ ++. ++.+.|.++++|++||+++|+|++
T Consensus 131 ~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~ 205 (429)
T COG1253 131 IAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDD 205 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCC
Confidence 479999999999999999999988764 433 23356777888 776 467899999999999999999999
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCCcE
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPR 151 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v~~ 151 (351)
.+|+++||||.++++++.+.+++ ++.+.+.+++|||+|||+++.++++|+++.|||+.....+. ...... .+++++
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~ 283 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLF 283 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeE
Confidence 99999999999999999999999 99999999999999999977899999999999998766542 222223 469999
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKDL 179 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe~ 179 (351)
|++++++.++|+.|++.+.|+|+|+|||
T Consensus 284 Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 284 VPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred ecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999999999999999995
No 4
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.3e-31 Score=254.38 Aligned_cols=173 Identities=28% Similarity=0.479 Sum_probs=152.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HhCCCC----CCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCccc
Q 018757 2 APIVRVLLCLFFPISYPISKILDL---MLGKGH----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEK 74 (351)
Q Consensus 2 Ap~l~~~~~i~~Plv~pls~ll~~---llg~~~----~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~ 74 (351)
++++.++..+|+|++|+++++++. +||.+. ....+.|||+.++.. ++.+|...+.+++|+.++|+|.++
T Consensus 125 s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~ 200 (423)
T COG4536 125 SFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENL 200 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccc
Confidence 678899999999999999998775 467552 457899999999984 556677778899999999999999
Q ss_pred ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC-cchhhhh--ccCCcE
Q 018757 75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-VPLRKMI--IRRIPR 151 (351)
Q Consensus 75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~-~~V~dIM--~r~v~~ 151 (351)
+|.|||+||.++..++.|++.+ ++++.+....|+|+|||.++.++++|+++.||++++..+.+ ..-.+++ ..+++|
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyF 279 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYF 279 (423)
T ss_pred eeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCee
Confidence 9999999999999999999999 89999999999999999999999999999999999876643 2222332 478999
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKDL 179 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe~ 179 (351)
||+.+++.+.|..|++++.|++.|||||
T Consensus 280 VPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 280 VPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred cCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 9999999999999999999999999995
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=7.1e-29 Score=239.19 Aligned_cols=150 Identities=25% Similarity=0.474 Sum_probs=130.6
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHH
Q 018757 21 KILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTL 100 (351)
Q Consensus 21 ~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal 100 (351)
.++..++|.+. .|++||+.|++ ++.++|.|+++|++||+++|+|.+.+|++||+||.++++++.++++. +++
T Consensus 21 ~~~~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~ 92 (292)
T PRK15094 21 LLLSQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECL 92 (292)
T ss_pred HHHHHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHH
Confidence 33444566543 58999999998 45678999999999999999999999999999999999999999999 999
Q ss_pred HHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 101 NAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 101 ~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+.+++++++|||+++.++++|+|+.+||+...... ...+.++ ++++++|++++++.++++.|++++.+++||+|+
T Consensus 93 ~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe 171 (292)
T PRK15094 93 DVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE 171 (292)
T ss_pred HHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC
Confidence 9999999999999987668899999999998644321 2347887 577789999999999999999999999999999
Q ss_pred C
Q 018757 179 L 179 (351)
Q Consensus 179 ~ 179 (351)
|
T Consensus 172 ~ 172 (292)
T PRK15094 172 F 172 (292)
T ss_pred C
Confidence 3
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=213.42 Aligned_cols=152 Identities=24% Similarity=0.463 Sum_probs=136.2
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHH
Q 018757 19 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD 98 (351)
Q Consensus 19 ls~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~e 98 (351)
+..+++.+|..+ .-+++||..+++ ++++.+.|+.+-+.|+++++++.+++|+|||.||.+++++..+.++. +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 455555555433 356899999998 56778899999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEE
Q 018757 99 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 176 (351)
Q Consensus 99 al~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVV 176 (351)
.+..|.+..||||||+.++++++.||+..|||++..... ...++++ .||+++||+...+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999889999999999999876543 3568886 8999999999999999999999999999999
Q ss_pred ecC
Q 018757 177 KDL 179 (351)
Q Consensus 177 De~ 179 (351)
|+|
T Consensus 170 DEf 172 (293)
T COG4535 170 DEF 172 (293)
T ss_pred ecc
Confidence 995
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.80 E-value=1.7e-19 Score=185.10 Aligned_cols=299 Identities=37% Similarity=0.506 Sum_probs=221.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCccccccccc
Q 018757 1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAM 80 (351)
Q Consensus 1 ~Ap~l~~~~~i~~Plv~pls~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIM 80 (351)
+.|++++++++++|+.||++++ ++++|...+..+.+.+++.++.+++.|+++ |.+..+|..+|.+++.|.++.+++||
T Consensus 133 ~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evm 210 (498)
T KOG2118|consen 133 LVPLVRILSFLCLPIAYPFSKL-DTALGLNLGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVM 210 (498)
T ss_pred ceehHHHHHHHhhhhheehhhh-hhhhccccccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhc
Confidence 4689999999999999999999 999998877778889999999998887665 99999999999999999999999999
Q ss_pred ccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc----ccCCcchhhhhccCCcEecCCC
Q 018757 81 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDM 156 (351)
Q Consensus 81 tPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~----~~~~~~V~dIM~r~v~~V~~~~ 156 (351)
||..++++++.+..+..+.+..+.++||||+||++.+..+.+|.+....++... .....++...|.+++..+++++
T Consensus 211 tpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~ 290 (498)
T KOG2118|consen 211 TPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENM 290 (498)
T ss_pred cchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcc
Confidence 999999999999999877888889999999999998777788887777776655 3335678888889999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCCCCCCCCcccccccccc-ccccccccccccchhh-----hhcc
Q 018757 157 PLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGV-TAAGQNLRNKLESKDA-----QQTK 230 (351)
Q Consensus 157 ~L~daL~~m~~~~~~~apVVDe~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~ 230 (351)
++.+.++.|++.+.|++.|....+...--.. +.. ...-.++.......+. .-.|..++--...+++ +...
T Consensus 291 ~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l---~~~-~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (498)
T KOG2118|consen 291 PLLDLLNEFQKGKSHMAVVRNGHVDIFVLTL---EDL-EEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQL 366 (498)
T ss_pred cHHHHHHHHhhhhceeEEEecCCcceeeEec---cch-hhhcceeccccccccchhcccchhhcccccccccccchhhhh
Confidence 9999999999999999999875433211110 100 0000001000000000 0001110000000110 0000
Q ss_pred CCCCCCCCccccCCCCccccccCCCCCCCCCCCCC-ceEEEEeHHHHHHHHHhcccccchhhhhhHHHHhhhccccccc
Q 018757 231 KVPPATPTFNKRHRGCSYCILDFENGPFPDFPSND-EAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQE 308 (351)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vGiiT~~Dvie~l~~~ei~de~d~~~~~~~~~~~~~~~~~~ 308 (351)
+ ...++++|+..++-++++....+++.....+ -..|++|++++++++++++|.++.+.+...++..+.+.+++.-
T Consensus 367 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~ 442 (498)
T KOG2118|consen 367 G---ERSPIKERSPRSSESLLDSRKSAFEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLM 442 (498)
T ss_pred c---ccccccccCCCCCccccccccccccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhh
Confidence 0 3345677777667678888877777655553 4578899999999999999999999999999999988766643
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.74 E-value=3.9e-17 Score=166.25 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHhcccccccC------CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHH--
Q 018757 34 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT-- 105 (351)
Q Consensus 34 ~~s~eEL~~LI~~~~~es~~~------G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-- 105 (351)
.++.+|+..+++. ..++ +.++++|+++++++++|++.+|+++|++ +++++++++|+. ++++.|++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 5788999999974 3333 4799999999999999999999999985 889999999999 99999986
Q ss_pred ---cCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 106 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 106 ---~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++...+||++++ ++++|+|+.+|++.... +.+++++|.++++++++++++.++++.|++++...+||+|+
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~ 234 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN 234 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence 334566777764 88999999999987543 45799998888889999999999999999999999999998
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.73 E-value=6.1e-17 Score=153.59 Aligned_cols=137 Identities=14% Similarity=0.253 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhh-------cCcccccccccccCcceEEEcCCCCchHHHHHHHHHc
Q 018757 34 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGAL-------ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 106 (351)
Q Consensus 34 ~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l-------~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~ 106 (351)
-++.++|...+.. -.|.-.|+.++.+.+.+-. .+.+.++.|||++ +|++++.+++++ ++.+++.+|
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 4788999988873 3445567777765544322 3678999999996 999999999999 999999999
Q ss_pred CCcEeeeeeCCCCcEEEEEEhhhhhccccc---------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757 107 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 177 (351)
Q Consensus 107 ~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVD 177 (351)
++..+||+|++ .+++|+|+.+|+++.... ...+++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999986 799999999999973221 14578999999999999999999999999999999999999
Q ss_pred c
Q 018757 178 D 178 (351)
Q Consensus 178 e 178 (351)
+
T Consensus 354 ~ 354 (382)
T COG3448 354 A 354 (382)
T ss_pred C
Confidence 8
No 10
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.72 E-value=1.7e-17 Score=154.75 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=99.9
Q ss_pred HHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--Ccchh
Q 018757 65 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR 142 (351)
Q Consensus 65 I~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~ 142 (351)
+..+.++.+.+|+++|++ +++++.+++|+. ++.+++.++++...||+++ ++++|+++..|+..+..++ +.+|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345566889999999996 889999999999 9999999999999999986 4899999999999887664 67899
Q ss_pred hhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 143 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 143 dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++|.+.+++|.+++.+.||+++|..+++..++|+|.
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds 273 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS 273 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence 999999999999999999999999999999999996
No 11
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.70 E-value=3.2e-16 Score=159.61 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHhcccccccCCCCCH-----HHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757 33 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 107 (351)
Q Consensus 33 ~~~s~eEL~~LI~~~~~es~~~G~L~~-----~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 107 (351)
..+|++||..++.. .+..|.|.+ +|++++++++.+.+. |.+ +++++++++++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 46899999998874 445788884 899999999977654 553 668999999999 9999999999
Q ss_pred CcEeeeeeCCC--CcEEEEEEhhhhhcccccCCcchhhhhc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 108 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 108 ~sriPVvd~~~--~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++||++++. ++++|+|+.+||+.... ...++.++|. .+++++++++++.++++.|.+++.+.+||+|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99999998753 68999999999986432 3468999987 48999999999999999999999999999998
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.63 E-value=2.2e-15 Score=145.96 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=103.5
Q ss_pred HHHHHHHhhc-----CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 61 ETTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 61 E~~mI~~~l~-----l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
-+.||.+++. -+-++|.|||+|..+..++..+++++ +..++..+.|++||||++.. .+++|+|+.||+....+
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP 247 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence 3667777765 34468999999999999999999999 89999999999999999986 78999999999998765
Q ss_pred cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 136 RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 136 ~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.+++..+|.+.+++|.+.+++..+.+.|.-.++.++||+|+
T Consensus 248 --~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~ 288 (432)
T COG4109 248 --STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS 288 (432)
T ss_pred --CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence 56899999999999999999999999999999999999998
No 13
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.59 E-value=3.4e-14 Score=146.11 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757 33 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 107 (351)
Q Consensus 33 ~~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 107 (351)
..+|++||..++. +++..|.|. +++.++++++.. ++++|.+ +++++++++++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4689999999887 345677777 578889998876 4567764 778999999999 9999999999
Q ss_pred CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 108 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 108 ~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++||++++ ++++|+|+.+||..... ...++.++|. ++++++++++++.+++..|.+++.+.+||+|+
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe 187 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999865 89999999999975432 2467999987 78899999999999999999999999999998
No 14
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.56 E-value=2.5e-14 Score=139.30 Aligned_cols=105 Identities=19% Similarity=0.124 Sum_probs=91.6
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----Ccchhhhhcc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR 147 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r 147 (351)
..++|+++|++..++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+.+....+ ..++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999998544788999999999 99999999998888888765 8999999999997654321 3579999999
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++.+++++.++++.|.+++.+.+||+|+
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 308 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVADG 308 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence 9999999999999999999999999999976
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=5.5e-14 Score=114.56 Aligned_cols=92 Identities=20% Similarity=0.374 Sum_probs=81.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+.+..... ..++.++|..++.++.+++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457899999999 89999999999999999875 8899999999998743222 3568899988899999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
..|.+++.+.+||+|+
T Consensus 80 ~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 80 RIFRETEPPVVAVVDK 95 (111)
T ss_pred HHHHHcCCCeEEEEcC
Confidence 9999999999999987
No 16
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.1e-13 Score=140.38 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhh
Q 018757 56 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNL 130 (351)
Q Consensus 56 ~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDL 130 (351)
.+++++++.++.++.+.+.+++.+|+. +++++++++|+. +++..+++.+ ...+.|+|.+ ++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 478999999999999999999999995 899999999999 9999999654 4567788875 789999999999
Q ss_pred hcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 131 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 131 l~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+.+ ...++++|.+.+++|.++++.+++.+.|.+++.-.+||||+
T Consensus 190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 97765 45899999999999999999999999999999999999998
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=9.8e-14 Score=114.24 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=76.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchhh------hhccCCcEec
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRK------MIIRRIPRVS 153 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~d------IM~r~v~~V~ 153 (351)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+||+.....+ ..++.+ +|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999999 89999999999999999874 8999999999998644222 112333 2335578999
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 154 EDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 154 ~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECC
Confidence 9999999999999999999999987
No 18
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=1.2e-13 Score=112.91 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
.+.++++++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++.... ...++.++|.++++++.+++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 466899999999 89999999999999999875 889999999999864321 14578999888999999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHHHHHHHcCCCeEEEECC
Confidence 9999999999999999987
No 19
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.3e-13 Score=111.07 Aligned_cols=92 Identities=12% Similarity=0.260 Sum_probs=81.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567899999999 89999999999999999875 8999999999998654433346889888899999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+.+.+.+||+++
T Consensus 81 ~~~~~~~~~~Vv~~ 94 (110)
T cd04605 81 MERHNISALPVVDA 94 (110)
T ss_pred HHHhCCCEEeEECC
Confidence 99999999999987
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.6e-13 Score=111.78 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=80.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++.++.+++++. ++++.|.+++++.+||++++.++++|+++.+|+++.... ...++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999999 899999999999999998633689999999999864211 13578899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
+++..|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN 99 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC
Confidence 9999999999999999987
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=6.2e-14 Score=135.99 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=90.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCC
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI 149 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v 149 (351)
..+|+++|++..++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+.+.... ...++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 468999998632388999999999 89999999999999999875 899999999998754322 2457899998999
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++.++.++.++++.|.+++...+||+|+
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 302 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDE 302 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999999987
No 22
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.7e-13 Score=110.61 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=72.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
+++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+.+... +.++.+++++.+|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578999999999 99999999999999999864478999999999986431 7789999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++.+.+||+|+
T Consensus 68 m~~~~~~~lpVvd~ 81 (98)
T cd04618 68 LLKNKIHRLPVIDP 81 (98)
T ss_pred HHHCCCCEeeEEEC
Confidence 99999999999987
No 23
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.5e-13 Score=110.98 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=81.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---CcchhhhhccCCcEecCCCCHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~L~da 161 (351)
++.+++.++++. ++++.|.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456899999999 89999999999999999875 8899999999998654321 346888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
+..|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 80 LDIMREKQIGRLPVVDD 96 (111)
T ss_pred HHHHHHcCCCeeeEeEC
Confidence 99999999999999987
No 24
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.2e-13 Score=109.64 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=80.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----CcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++++++++.++. ++++.|.+.+++++||++++ ++++|+++.+|++.+.... ..++.++|.+++.+++++.++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999999 89999999999999999875 7899999999998654321 3478899878899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+.+.+.+||+++
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC
Confidence 9999999999999999987
No 25
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.51 E-value=2.1e-13 Score=109.95 Aligned_cols=92 Identities=41% Similarity=0.638 Sum_probs=79.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCCcEecCCCCHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
+++++++++++. ++++.|.+.+++.+||++++.++++|+++.+|+++....+. .++.++ ++++.++.+++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 577899999999 99999999999999999864378999999999987654321 356665 57889999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04590 80 EEMRKERSHMAIVVDE 95 (111)
T ss_pred HHHHhcCCcEEEEEEC
Confidence 9999999999999987
No 26
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.51 E-value=2e-13 Score=111.14 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=80.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+||+...... ..++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345789999999 89999999999999999875 8999999999998654321 23488888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
+++.|.+++...+||+|+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 80 ALDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHHcCCceeeEEeC
Confidence 999999999999999987
No 27
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.4e-13 Score=108.80 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=81.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 567899999999 99999999999999999875 89999999999986532 457999988889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~Vv~~ 92 (108)
T cd04596 79 MIWEGIEMLPVVDD 92 (108)
T ss_pred HHHcCCCeeeEEcC
Confidence 99999999999987
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3e-13 Score=111.23 Aligned_cols=92 Identities=16% Similarity=0.343 Sum_probs=80.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------CcchhhhhccCCc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 150 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~v~ 150 (351)
++.+++++.++. ++.+.|.+.+++++||++++ ++++|+|+.+||+...... ..++.++|.+.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999999 99999999999999999875 8899999999997643221 2368899888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 9999999999999999999999999987
No 29
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=3.7e-13 Score=108.73 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=80.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---CcchhhhhccCCcEecCCCCHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~L~da 161 (351)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++..... ..++.++|.++++++.+++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356789999999 89999999999999999876 8999999999997653322 357888888899999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
++.|.+++...+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (112)
T cd04624 80 AKLMRKNNIRHHLVVDK 96 (112)
T ss_pred HHHHHHcCccEEEEEcC
Confidence 99999999999999987
No 30
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=3.9e-13 Score=108.42 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=80.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--CCcchhhhhccCCcEecCCCCHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
++.++..++++. ++++.|.+.++.++||++++ ++++|+|+.+|+++.... ...++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999999 89999999999999999875 789999999999865322 23578899888999999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04639 80 RLMQQGGAPAVPVVDG 95 (111)
T ss_pred HHHHhcCCceeeEEcC
Confidence 9999999999999987
No 31
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=2.1e-13 Score=119.48 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=93.6
Q ss_pred cCCCCCHHH---HHHHHHhhcC--cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEh
Q 018757 53 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV 127 (351)
Q Consensus 53 ~~G~L~~~E---~~mI~~~l~l--~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~ 127 (351)
+.|.+++.- +.++..+.+- ..++++.||+. +++.+.+++++. +++++|.++|||.+||+++ ++++|-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 356666543 2233333322 34678999984 899999999999 9999999999999999986 689999999
Q ss_pred hhhhcccccC-----CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 128 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 128 kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.++.++..++ ..+++++|-.++++|++++++..+-.++..++ .+.|++.
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~ 167 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVEN 167 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC
Confidence 9998876443 56789999999999999999999888887764 3556644
No 32
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=4.8e-13 Score=111.23 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=77.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc-----------------chhhhhcc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR 147 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~-----------------~V~dIM~r 147 (351)
+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++........ ...+.|..
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999999 89999999999999999876 899999999999875432211 01234567
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++.++++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~ 110 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE 110 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 8899999999999999999999999999987
No 33
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=4.8e-13 Score=109.96 Aligned_cols=92 Identities=12% Similarity=0.244 Sum_probs=79.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhcc--CCcEecCCCCH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL 158 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r--~v~~V~~~~~L 158 (351)
++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456899999999 89999999999999999875 789999999998875432 13467788764 68899999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 018757 159 YDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 159 ~daL~~m~~~~~~~apVVDe 178 (351)
.+++++|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999997
No 34
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=5.3e-13 Score=109.86 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=80.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------------CcchhhhhccCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI 149 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------------~~~V~dIM~r~v 149 (351)
++.+++++.++. ++++.|.+.+++.+||++++.++++|+|+.+|++...... ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456889999999 9999999999999999987447899999999998644321 236888888889
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence 99999999999999999999999999987
No 35
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=4.2e-13 Score=110.89 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=76.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--C-----------cchhhhhccCCcE
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR 151 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~-----------~~V~dIM~r~v~~ 151 (351)
++.+++.++++. ++++.|.+++++++||++++.++++|+|+.+|+++..... . ..+.++|..++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 456899999999 8999999999999999986437899999999988643221 0 0112356778889
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+++++.+|++.|.+++.+.+||+|+
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~ 107 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDN 107 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence 999999999999999999999999987
No 36
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7.4e-13 Score=107.50 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=79.2
Q ss_pred eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCcEecCCCCHHHHH
Q 018757 86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
.++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 45789999999 89999999999999999875 889999999998754322 13568899877888999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
+.|.+++.+.+||+|+
T Consensus 82 ~~~~~~~~~~~~Vv~~ 97 (113)
T cd04607 82 ALMRERSIRHLPILDE 97 (113)
T ss_pred HHHHHCCCCEEEEECC
Confidence 9999999999999987
No 37
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=5.1e-13 Score=113.57 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=80.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------------------------
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------------------- 137 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------------------- 137 (351)
++.++++++++. ++++.|.+.+++++||++++ ++++|+|+..|+++.....
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456899999999 99999999999999999875 8999999999998654211
Q ss_pred CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..++.++|..++.++.+++++.++++.|.+++.+.+||+++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 24688998888899999999999999999999999999987
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.6e-13 Score=107.70 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=77.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------CcchhhhhccCCcEecCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED 155 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------~~~V~dIM~r~v~~V~~~ 155 (351)
++++++.++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+++..... ..++.++|..++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999999 99999999999999999874 7899999999998654321 356888888889999999
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 018757 156 MPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 156 ~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++.+++..|.+.+ .+||+|+
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~ 100 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDD 100 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeC
Confidence 99999999998864 5889987
No 39
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=7.1e-13 Score=108.66 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=80.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-------------CCcchhhhhccCCcE
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR 151 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-------------~~~~V~dIM~r~v~~ 151 (351)
++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456799999999 99999999999999999875 889999999999865321 235688888888999
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDD 106 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 999999999999999999999999987
No 40
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.46 E-value=6.6e-13 Score=136.19 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=91.0
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP 150 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~ 150 (351)
+...++.++|++ +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+..... ..++.++|.++++
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~i 159 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLV 159 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCce
Confidence 345678899974 778999999999 99999999999999999865 78999999999975432 3579999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.+++..|.+++.+.+||+|+
T Consensus 160 tV~~d~sL~eAl~lM~~~~i~~LPVVD~ 187 (479)
T PRK07807 160 TLPAGTDPREAFDLLEAARVKLAPVVDA 187 (479)
T ss_pred EECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999999999999999999999987
No 41
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=104.33 Aligned_cols=89 Identities=10% Similarity=0.195 Sum_probs=79.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++..+++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999999 899999999999999997 3 78999999999987543 346889988889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (105)
T cd04599 77 MEEKKIERLPVLRE 90 (105)
T ss_pred HHHcCCCEeeEEEC
Confidence 99999999999987
No 42
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=5.3e-13 Score=108.52 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=77.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhcccccC--Ccchhhhhcc--CCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r--~v~~V~~~~~L~ 159 (351)
++.++++++++. ++++.|.+++ ++.+||++++ ++++|+|+.+||+...... ..++.++|.. +++++.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456899999999 8999987765 8999999875 8899999999998765322 3578888643 356899999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 80 EVLKLLEEQGLDELAVVED 98 (114)
T ss_pred HHHHHHHHCCCCeeEEEcC
Confidence 9999999999999999987
No 43
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.1e-12 Score=107.41 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=79.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-------------cCCcchhhhhccCCcE
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 151 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~v~~ 151 (351)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567899999999 89999999999999999864 89999999999986321 1234678888888899
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++++.+++..|.+.+.+.+||+|+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 106 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNE 106 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 999999999999999999999999987
No 44
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.44 E-value=1.5e-12 Score=104.67 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=80.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCcEecCCCCHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~L~da 161 (351)
++.++++++++. ++++.|.+.++..+||+++ ++++|+++.+||++.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456899999999 8999999999999999986 789999999999865432 2457889988889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
++.|.+.+.+.+||+|+
T Consensus 79 l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 79 RQLMREHGIRHLVVVDD 95 (111)
T ss_pred HHHHHHcCCeEEEEECC
Confidence 99999999999999987
No 45
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.44 E-value=1.6e-12 Score=103.92 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=78.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++.++++++++. ++++.|.+.++..+||++++ ++++|+++.+|++.... .++.++|.+.+.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456889999999 89999999999999999865 88999999999987532 35788877777889999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (106)
T cd04582 77 MFAHDMSWLPCVDE 90 (106)
T ss_pred HHHCCCCeeeEECC
Confidence 99999999999987
No 46
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.3e-12 Score=108.44 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=78.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----------------CCcchhhhhcc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR 147 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----------------~~~~V~dIM~r 147 (351)
++.++.+++++. ++++.|.+.+++.+||++++ ++++|+++.+|++..... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456899999999 99999999999999999876 889999999998753211 12468889888
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757 148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 177 (351)
Q Consensus 148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVD 177 (351)
+++++++++++.+++..|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999998885
No 47
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.44 E-value=1.5e-12 Score=104.60 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=79.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC---cchhhhhccCCcEecCCCCHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~---~~V~dIM~r~v~~V~~~~~L~da 161 (351)
++..+++++++. ++++.|.+.+++++||+++ ++++|+++.+|+++...... .++.++|.++++++.+++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456899999999 9999999999999999986 78999999999987543321 25778888899999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~V~~~ 95 (111)
T cd04612 79 LKRMAERDIGRLPVVDD 95 (111)
T ss_pred HHHHHhCCCCeeeEEcC
Confidence 99999999999999987
No 48
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.44 E-value=1.7e-12 Score=104.49 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=80.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
++++++.++++. ++++.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 467899999999 8999999999999999986 7899999999998764332 2468888878889999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
+.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 79 RLMNKHNVGRLIVTDD 94 (110)
T ss_pred HHHHhcCCCEEEEECC
Confidence 9999999999999987
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.5e-12 Score=104.91 Aligned_cols=91 Identities=18% Similarity=0.340 Sum_probs=80.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--CCcchhhhhccCCcEecCCCCHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 162 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~L~daL 162 (351)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+|+..|++..... ...++.++|.++++++.+++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567899999999 8999999999999999986 789999999998864422 24578899888999999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 018757 163 NEFQKGHSHIAVVYKD 178 (351)
Q Consensus 163 ~~m~~~~~~~apVVDe 178 (351)
..|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~V~~~ 95 (110)
T cd04595 80 ELMVEHDIGRVPVVED 95 (110)
T ss_pred HHHHHcCCCeeEEEeC
Confidence 9999999999999986
No 50
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.44 E-value=1.7e-12 Score=103.93 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=80.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++..++++.++. ++++.|.+.++..+||++++ ++++|+|+.+|++.... ...++.++|...+.++++++++.+++..
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 556789999999 89999999999999999875 78999999999986542 2357888888889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~vv~~ 93 (109)
T cd04583 80 VLKRGPKYVPVVDE 93 (109)
T ss_pred HHHcCCceeeEECC
Confidence 99999999999987
No 51
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.2e-12 Score=109.67 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=79.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----C--------------------cc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP 140 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~--------------------~~ 140 (351)
++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456899999999 99999999999999999875 8899999999998644221 1 17
Q ss_pred hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.++|.++++++.+++++.+++..|.+.+.+.+||+|+
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 88888888999999999999999999999999999987
No 52
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1e-12 Score=106.30 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=80.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc------CCcchhhhhccCCcEecCCCCH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL 158 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~------~~~~V~dIM~r~v~~V~~~~~L 158 (351)
++.++++++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456799999999 89999999999999999875 789999999999864321 2457889988888999999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 018757 159 YDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 159 ~daL~~m~~~~~~~apVVDe 178 (351)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC
Confidence 99999999999999999987
No 53
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.43 E-value=7.2e-13 Score=138.70 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=91.4
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 146 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~ 146 (351)
++.++|+|+|++ ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+.+.... ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 567799999986 567899999999 89999999999999999875 889999999999874321 1357889998
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++++++.++++.|.+++.+.+||+|+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~ 551 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES 551 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence 88999999999999999999999999999987
No 54
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.2e-12 Score=108.96 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=75.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc----------ccCCcchhhhhccCCcE--e
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V 152 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~----------~~~~~~V~dIM~r~v~~--V 152 (351)
++.+++.++++. ++++.|.++++..+||++++ ++++|+++.+|++... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356899999999 89999999999999999875 7899999999998521 11235688997655433 3
Q ss_pred ----cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 153 ----SEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 153 ----~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~ 109 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVDR 109 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence 36899999999999999999999997
No 55
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.43 E-value=1.7e-12 Score=104.79 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=79.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
+++.++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 346789999999 8999999999999999986 679999999999865422 135788998888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 79 ALLLMTRHRIHRVVVREG 96 (111)
T ss_pred HHHHHHHhCccEEEEeeC
Confidence 999999999999999986
No 56
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.43 E-value=3.7e-13 Score=112.71 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=70.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc----cCCcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~----~~~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.... ....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999999 99999999999999999875 78999999999986322 1256899999999999999999999
Q ss_pred HHHHHHhC
Q 018757 161 ILNEFQKG 168 (351)
Q Consensus 161 aL~~m~~~ 168 (351)
++++|...
T Consensus 81 v~~~~~~~ 88 (124)
T cd04608 81 LSRILETD 88 (124)
T ss_pred HHhhcccC
Confidence 99987643
No 57
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.43 E-value=1.9e-12 Score=103.79 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=78.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecC-CCCHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN 163 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~-~~~L~daL~ 163 (351)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.++++.... ...++.++|...+.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456899999999 89999999999999999875 89999999999975532 346788998666676666 999999999
Q ss_pred HHHhCCCcEEEEEec
Q 018757 164 EFQKGHSHIAVVYKD 178 (351)
Q Consensus 164 ~m~~~~~~~apVVDe 178 (351)
.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 80 LLHEHKIEKLPVVDD 94 (110)
T ss_pred HHHHhCCCeeeEEcC
Confidence 999999999999987
No 58
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=2.1e-12 Score=104.07 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=79.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.+++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|++..... ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 467899999999 8999999999999999986 789999999998853211 135788998889999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
+++.|.+.+.+.+||+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD 96 (111)
T ss_pred HHHHHHHcCCCeeeEeEC
Confidence 999999999999999987
No 59
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=2.1e-12 Score=104.42 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=79.4
Q ss_pred eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHHH
Q 018757 86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~da 161 (351)
...+.+++++. ++++.|.+++++++||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 45789999999 89999999999999999875 789999999999864321 1357889888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
++.|.+.+.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~Vvd~ 97 (113)
T cd04615 81 RWLMSNNNISRLPVLDD 97 (113)
T ss_pred HHHHHHcCCCeeeEECC
Confidence 99999999999999987
No 60
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.42 E-value=2.5e-12 Score=103.32 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=76.8
Q ss_pred EEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHH
Q 018757 87 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 166 (351)
Q Consensus 87 vtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~ 166 (351)
.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|++.... .++.++|..++.+++++.++.+++..|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3689999999 8999999999999999985 78999999999986532 3577888888899999999999999999
Q ss_pred hCCCcEEEEEec
Q 018757 167 KGHSHIAVVYKD 178 (351)
Q Consensus 167 ~~~~~~apVVDe 178 (351)
+++.+.+||+|+
T Consensus 78 ~~~~~~~~Vv~~ 89 (104)
T cd04594 78 KNKTRWCPVVDD 89 (104)
T ss_pred HcCcceEEEEEC
Confidence 999999999976
No 61
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.3e-12 Score=109.84 Aligned_cols=92 Identities=14% Similarity=0.286 Sum_probs=79.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc--------------------------cCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA 138 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~--------------------------~~~ 138 (351)
++.++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999999 89999999999999999865 88999999999875321 123
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.++.++|..+++++++++++.+++..|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~ 120 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG 120 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence 5688888788999999999999999999999999999985
No 62
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.3e-12 Score=102.11 Aligned_cols=89 Identities=17% Similarity=0.322 Sum_probs=79.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+||+.... ..++.++|..++.++.+++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999999 8999999889999999985 78999999999986532 346889988888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vv~~ 91 (107)
T cd04610 78 MFRTGISKLPVVDE 91 (107)
T ss_pred HHHhCCCeEeEECC
Confidence 99999999999987
No 63
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.8e-12 Score=104.73 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=74.8
Q ss_pred EcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHH
Q 018757 89 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN 163 (351)
Q Consensus 89 V~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~ 163 (351)
+.+++++. ++++.|.+++ +..+||++++ ++++|+|+.+|++... ...++.++|..++.++.+++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 57889999 8999998887 4688999865 7899999999998753 245788988778899999999999999
Q ss_pred HHHhCCCcEEEEEec
Q 018757 164 EFQKGHSHIAVVYKD 178 (351)
Q Consensus 164 ~m~~~~~~~apVVDe 178 (351)
.|...+.+.+||+|+
T Consensus 78 ~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 78 LFEKYDLLALPVVDE 92 (109)
T ss_pred HHHHcCCceeeeECC
Confidence 999999999999987
No 64
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.41 E-value=2.5e-12 Score=103.53 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=80.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+++..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456899999999 89999999999999999875 7899999999998653321 25788998889999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
++..|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHHHHhhCCccEeeEEeC
Confidence 999999999999999975
No 65
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.41 E-value=2.8e-12 Score=104.32 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=79.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------CcchhhhhccCCc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 150 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~v~ 150 (351)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++...... ..++.++|.++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456799999999 8999999999999999986 7899999999998654221 2467888888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.+++..|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence 9999999999999999999999999987
No 66
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.41 E-value=2.5e-12 Score=103.80 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=79.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+++++..... ..++.++|..++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455789999999 89999998899999999875 7899999999987654321 24689998888899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
+++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~Vv~~ 98 (114)
T cd04604 81 ALELMEENKITALPVVDD 98 (114)
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 999999999999999986
No 67
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.40 E-value=2.9e-12 Score=104.46 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=77.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecC--CCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~--~~~L~d 160 (351)
.+.++..++++. ++++.|.+.++..+||+++. .++++|+|+.+|++.... ...++.++|.....++.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456889999999 89999999999999999862 378999999999875432 235688998777777766 999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
+++.|.+++.+.+||+|+
T Consensus 81 ~l~~~~~~~~~~~pVv~~ 98 (114)
T cd04602 81 ANEILRESKKGKLPIVND 98 (114)
T ss_pred HHHHHHhcCCCceeEECC
Confidence 999999999999999987
No 68
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.40 E-value=2.8e-12 Score=103.55 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=78.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-cC----CcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-RD----AVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-~~----~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++.++..++++. ++++.|.+++.+.+||+++ ++++|+|+.+|++.... .+ ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456789999999 8999999999999999985 78999999999874221 11 2578899888889999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHHHHHHcCCCcccEECC
Confidence 9999999999999999987
No 69
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.40 E-value=4.5e-12 Score=130.94 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHhcccccccCC----CC-CHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757 33 VLLRRAELKTFVNFHGNEAGKGG----DL-THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 107 (351)
Q Consensus 33 ~~~s~eEL~~LI~~~~~es~~~G----~L-~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 107 (351)
..+++.++-..+...+ + -| .. .++.+..++.++.+. ++ |++ +++++++++|+. ++++.|.+++
T Consensus 63 ~~vt~~~lA~Ama~aG---G-iGfI~~~as~E~q~~~Irkvk~~~---~g--mi~--dpvtV~pd~tV~-dA~~lm~~~~ 130 (505)
T PLN02274 63 DTVTESDMAIAMAALG---G-IGIVHYNNTAEEQAAIVRKAKSRR---VG--FVS--DPVVKSPSSTIS-SLDELKASRG 130 (505)
T ss_pred cccchHHHHHHHHhCC---C-eEEEcCCCCHHHHHHHHHHhhccc---cc--ccC--CCeeeCCCCcHH-HHHHHHHhcC
Confidence 3567778876665321 0 11 12 345567888887542 22 653 778999999999 8999999999
Q ss_pred CcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 108 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 108 ~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~--v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++.+||++++ .++++|+|+.+|+.... ....+|.++|.++ ++++++++++.++++.|.+++.+.+||+|+
T Consensus 131 ~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~ 204 (505)
T PLN02274 131 FSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE 204 (505)
T ss_pred CceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999863 27899999999997543 2356899998766 779999999999999999999999999987
No 70
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=3.3e-12 Score=102.26 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=71.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
++.++.+++++. ++++.|.+.+++.+||++++ ++++|+++.+|++... .+.++.+++++.+++..
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 467899999999 89999999999999999865 8899999999998642 17889999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+++.+.+||+|+
T Consensus 67 m~~~~~~~lpVv~~ 80 (96)
T cd04614 67 MKRNRIEQIPIING 80 (96)
T ss_pred HHHhCCCeeeEECC
Confidence 99999999999987
No 71
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=4.1e-12 Score=103.25 Aligned_cols=91 Identities=14% Similarity=0.327 Sum_probs=76.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCC--CC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSED--MP 157 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~--~~ 157 (351)
++.+++.+.++. ++++.|.+++ +..+||+++ ++++|+|+.+|+++..... ..++.++|.++++++.++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 345789999999 8999998888 677787763 7899999999998643221 357889988888889887 78
Q ss_pred HHHHHHHHHhCCCcEEEEEec
Q 018757 158 LYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 158 L~daL~~m~~~~~~~apVVDe 178 (351)
+.+++..|.+++.+.+||+|+
T Consensus 79 l~~a~~~~~~~~~~~~pVvd~ 99 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLDD 99 (115)
T ss_pred HHHHHHHHHHhCCceEEEEcC
Confidence 999999999999999999987
No 72
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.5e-12 Score=104.73 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=79.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------------CCcchhhhhccCCc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 150 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~v~ 150 (351)
++.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|+++.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 467899999999 8999999999999999985 789999999999764321 12467888888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.+++..|.+++...+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence 9999999999999999999999999987
No 73
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=8.6e-12 Score=100.05 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=79.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 164 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~ 164 (351)
+++++..++++. ++++.|.+.+++++||++++ ++++|+++.++++.... ..++.++|..++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 467899999999 89999999999999999876 88999999999986432 246788888888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 018757 165 FQKGHSHIAVVYKD 178 (351)
Q Consensus 165 m~~~~~~~apVVDe 178 (351)
|.+.+.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vvd~ 91 (106)
T cd04638 78 MVENNIRRVPVVDD 91 (106)
T ss_pred HHHcCCCEEEEEEC
Confidence 99999999999986
No 74
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=6.2e-12 Score=101.52 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=79.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-----cCCcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-----~~~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++.++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999999 8999999999999999986 48999999999986431 123578899878888999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred HHHHHHHHcCCCeeEEeeC
Confidence 9999999999999999987
No 75
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7.2e-12 Score=101.13 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=77.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++.++++++++. ++++.|.++++..++|.+ + ++++|+++.+|+++.... ...++.++|..++.++.+++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567899999999 899999888888887775 3 789999999999865321 13578899877788999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|.+++...+||+|+
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC
Confidence 9999999999999999986
No 76
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.37 E-value=3.4e-12 Score=129.56 Aligned_cols=101 Identities=20% Similarity=0.369 Sum_probs=85.3
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 146 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~ 146 (351)
|..++|+++|.+ ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++.... ...++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 788999999975 678999999999 89999999999999999875 789999999999874322 1347899988
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++|++++++.+++..|.+++ .+ ||++
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~ 436 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--SA-IVTE 436 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--ee-EEEE
Confidence 88889999999999999998864 34 4444
No 77
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.37 E-value=4.6e-12 Score=102.90 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=76.3
Q ss_pred cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHH
Q 018757 84 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI 161 (351)
Q Consensus 84 ~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~da 161 (351)
.++..+++++++. ++.+.+.+.++.++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3567899999999 89999999999999999862 3789999999999865432 677888999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 018757 162 LNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 162 L~~m~~~~~~~apVVDe 178 (351)
+..|.+++.+.+||+++
T Consensus 74 ~~~~~~~~~~~~pVv~~ 90 (105)
T cd04591 74 HQLFRKLGLRHLLVVDE 90 (105)
T ss_pred HHHHHHcCCCEEEEEEC
Confidence 99999999999999965
No 78
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.37 E-value=3.1e-12 Score=131.92 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhccccc
Q 018757 59 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 136 (351)
Q Consensus 59 ~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~ 136 (351)
+++++++..+.++. .+.++.| .++++++|+. ++++.|.+++++.+||++++ .++++|+|+.+||......
T Consensus 87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 56666666665433 2222322 4899999999 99999999999999999862 3789999999999754322
Q ss_pred CCcchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 137 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 137 ~~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.+.+|.++|.. +++++++++++.+|++.|.++++..+||+|+
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~ 202 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK 202 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 35689999875 7788999999999999999999999999987
No 79
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1e-11 Score=100.25 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=78.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc-ccc----CCcchhhhhccCCcEecCCCCHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY 159 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~-~~~----~~~~V~dIM~r~v~~V~~~~~L~ 159 (351)
++.++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++.+++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 456899999999 9999999999999999986 889999999998732 111 12348899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 018757 160 DILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 160 daL~~m~~~~~~~apVVDe 178 (351)
++++.|...+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd04622 79 EAARLMREHQVRRLPVVDD 97 (113)
T ss_pred HHHHHHHHcCCCeeeEECC
Confidence 9999999999999999987
No 80
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.37 E-value=8e-12 Score=102.04 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=79.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-------------cCCcchhhhhccCCcE
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 151 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~v~~ 151 (351)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|++.... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456899999999 89999999999999999875 89999999999875431 1135688888888999
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 999999999999999999999999986
No 81
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=6.2e-12 Score=102.88 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=79.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------------CCcchhhhhccCCc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 150 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~v~ 150 (351)
+++++++++++. ++++.|.+.+++++||+++ ++++|+++..|++..... ...++.++|..++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456899999999 8999999999999999985 789999999999764321 13468888888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.+++..|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 9999999999999999999999999987
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.35 E-value=8.3e-12 Score=128.73 Aligned_cols=133 Identities=10% Similarity=0.202 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHhcccccccCCCC----C-HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757 33 VLLRRAELKTFVNFHGNEAGKGGDL----T-HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 107 (351)
Q Consensus 33 ~~~s~eEL~~LI~~~~~es~~~G~L----~-~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 107 (351)
..+++.++-.-+..+ +.-|.| + +++.+++..+..+ ++.|.+ +++++++++++. +++++|.+++
T Consensus 59 ~~vt~~~ma~a~a~~----GglGvi~~~~~~e~~~~~v~kvk~~-----e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~ 126 (495)
T PTZ00314 59 DTVTEHKMAIAMALM----GGIGVIHNNCSIEEQVEEVRKVKRF-----ENGFIM--DPYVLSPNHTVA-DVLEIKEKKG 126 (495)
T ss_pred cccccHHHHHHHHHC----CCeEEecCCCCHHHHHHHHhhcccc-----cccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence 456777777665532 222322 2 3456677777554 446654 667999999999 9999999999
Q ss_pred CcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 108 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 108 ~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++.+||++++ .++++|+|+.+|+..... ...+|.++|.+ +++++++++++.+++++|.+++.+.+||+|+
T Consensus 127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~-~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 127 FSSILITVDGKVGGKLLGIVTSRDIDFVKD-KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred CcEEEEEeCCccCCeEEEEEEHHHHhhccc-CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 9999999863 368999999999975432 35689999876 7899999999999999999999999999998
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.35 E-value=1.1e-11 Score=99.21 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=74.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.+++.++++. ++++.|.+++++++||+++ ++++|+++.+|+++..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999999 8999999999999999986 7899999999998764322 25688888888899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
++..|.+ .. .+||+++
T Consensus 79 ~~~~~~~-~~-~~~vv~~ 94 (110)
T cd04609 79 LSELLDR-GN-VAVVVDE 94 (110)
T ss_pred HHHHHHh-CC-ceeEEec
Confidence 9999988 33 4688877
No 84
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.34 E-value=1.1e-11 Score=127.02 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=89.2
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP 150 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~ 150 (351)
+..+++.++|+. +++++.+++++. ++++.|.+++++.+||+++ ++++|+|+.+||..... ..++.++|..+++
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~li 157 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLV 157 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCce
Confidence 346678889975 668999999999 9999999999999999875 57999999999975532 3579999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++++.+++.+|.+++.+.+||+|+
T Consensus 158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 158 TAPADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred EeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999999999999999999999987
No 85
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.32 E-value=2.4e-11 Score=96.00 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=79.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-C---cchhhhhccCCcEecCCCCHHH
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYD 160 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-~---~~V~dIM~r~v~~V~~~~~L~d 160 (351)
++.+++.+.++. ++++.|.+.++.++||++++ ++++|+++.+|++...... . ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999999 89999999999999999875 7899999999998755332 1 1156788888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 018757 161 ILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 161 aL~~m~~~~~~~apVVDe 178 (351)
++..|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~V~~~ 97 (113)
T cd02205 80 AAELMLEHGIRRLPVVDD 97 (113)
T ss_pred HHHHHHHcCCCEEEEEcC
Confidence 999999999999999987
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.32 E-value=2.3e-11 Score=98.53 Aligned_cols=97 Identities=24% Similarity=0.380 Sum_probs=84.7
Q ss_pred ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC-c--chhhhhccCCcEec
Q 018757 77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V--PLRKMIIRRIPRVS 153 (351)
Q Consensus 77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~-~--~V~dIM~r~v~~V~ 153 (351)
.++|. ..++++.++.++. ++...|.+++++++||.+. ++++|+++.+|++++..... . ++.++|.++++++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34554 4778999999999 9999999999999999975 36999999999998765432 2 48899888999999
Q ss_pred CCCCHHHHHHHHHh-CCCcEEEEEec
Q 018757 154 EDMPLYDILNEFQK-GHSHIAVVYKD 178 (351)
Q Consensus 154 ~~~~L~daL~~m~~-~~~~~apVVDe 178 (351)
++.++.++++.|.+ ++.+.+||+|+
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~~ 102 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVDD 102 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEEC
Confidence 99999999999999 79999999998
No 87
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.30 E-value=9.9e-12 Score=117.27 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=90.0
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP 150 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~ 150 (351)
++|+++|.+. ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+++.... ...++.++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999999 89999999999999999875 889999999999875322 24679999988999
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 151 RVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 151 ~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++.+++++.++++.|.+++.+.+||+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 9999999999999999999999999987
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.3e-11 Score=103.95 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=78.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----------------------------
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------------------- 136 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------------------------- 136 (351)
++++++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999999 8999999999999999985 789999999998754311
Q ss_pred --------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 137 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 137 --------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
...++.++|.+++.++++++++.+++..|.+.+.+.+||+++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 124577888888999999999999999999999999999986
No 89
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.7e-11 Score=98.75 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=75.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhccccc-------CCcchhhhhccCCcEecCCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM 156 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~-------~~~~V~dIM~r~v~~V~~~~ 156 (351)
++.++++++++. ++++.|...+ ++.+||+++ ++++|+|+.+|++..... ...++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345789999999 8999998887 899999986 889999999999854321 24578999888889999999
Q ss_pred CHHHHHHHHHhCCCc---EEEEEec
Q 018757 157 PLYDILNEFQKGHSH---IAVVYKD 178 (351)
Q Consensus 157 ~L~daL~~m~~~~~~---~apVVDe 178 (351)
++.+++..|.+++.. .++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~~ 103 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVTE 103 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEee
Confidence 999999999988753 3467776
No 90
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.23 E-value=2.6e-11 Score=123.90 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=91.8
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 146 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~ 146 (351)
|--.+|+++|+. ..+++++.+++. +|.+.|.+.|.+.+.|++++ +...|||+.+|+...... ...+|+++|+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 334568999985 567999999999 99999999999999999876 889999999999875432 2578999999
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.|+++|..++.+.+|+-.|.+++++++||.++
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 99999999999999999999999999999987
No 91
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.05 E-value=7.6e-10 Score=94.58 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC---c------------chhhhh----
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---V------------PLRKMI---- 145 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~---~------------~V~dIM---- 145 (351)
++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+||+++..... . .+.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999999 99999999999999999875 88999999999987543211 0 133454
Q ss_pred -----ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 146 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 146 -----~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..+++++.+++++.+|++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 367889999999999999999999999999997
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.05 E-value=1.7e-09 Score=112.68 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=50.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+|+++|++ ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence 3689999985 778999999999 99999999999999999875 89999999999864
No 93
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=1.6e-08 Score=73.01 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=36.1
Q ss_pred hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
|+++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~ 38 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE 38 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence 46889999999999999999999999999999999988
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.73 E-value=1.6e-08 Score=73.06 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=50.7
Q ss_pred cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
|+++|++ +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 5789986 889999999999 99999999999999999876 8999999999998754
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.2e-07 Score=92.61 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=80.8
Q ss_pred cccccccccCcc-eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEe
Q 018757 74 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 152 (351)
Q Consensus 74 ~tV~dIMtPr~~-VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V 152 (351)
.++.++|.+... .+...++.+.. +++..|...+.+++.|++++ ++++|+|+.+++...... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888853221 12344666787 89999999999999999876 899999999999765433 346777777778899
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 153 SEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 153 ~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
++++++.+++..|.+.... +||+|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~ 375 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDE 375 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence 9999999999999998777 889987
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.64 E-value=2e-07 Score=93.45 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=76.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccc-hhhh------hccCCcEe
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-LRKM------IIRRIPRV 152 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~-V~dI------M~r~v~~V 152 (351)
.+..+..+.++. ++++.|...+++.+||++.. ++.+|+++..|+....... ... ++.. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999999 99999999999999999986 7789999999987654332 112 3222 12356889
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 153 SEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 153 ~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.++.++..++..|..+++|.+.|||+
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcC
Confidence 99999999999999999999999998
No 97
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.52 E-value=1.6e-06 Score=86.53 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=74.5
Q ss_pred EEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHH
Q 018757 87 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 166 (351)
Q Consensus 87 vtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~ 166 (351)
....++.+.. ++++.|...+...+.|++++ +++.|+|+.+++..+... ...+.+.|...+.+|++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3456677888 89999999999999999876 789999999998865443 24577777778889999999999999999
Q ss_pred hCCCcEEEEEec
Q 018757 167 KGHSHIAVVYKD 178 (351)
Q Consensus 167 ~~~~~~apVVDe 178 (351)
+.+.. +||+|+
T Consensus 330 ~~~~~-~~v~~~ 340 (363)
T TIGR01186 330 KAGIK-VPVVDE 340 (363)
T ss_pred hCCCC-EEEECC
Confidence 99999 999987
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.46 E-value=4.8e-07 Score=89.95 Aligned_cols=137 Identities=11% Similarity=0.135 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHhccccccc-CCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEe
Q 018757 33 VLLRRAELKTFVNFHGNEAGK-GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 111 (351)
Q Consensus 33 ~~~s~eEL~~LI~~~~~es~~-~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sri 111 (351)
+.+++.|.-....+++-=+-= ..-=.++++.++.++-.|.. +-++ +.+.+.++.++. ++++.-..++|+.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence 467777776655543100000 01125678899999987774 3333 446799999999 89999999999999
Q ss_pred eeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 112 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 112 PVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
||.++. ..+++|+|+.+|+-.. ....+.+.++|+...++.+...++.++-+.+++.+..-+||||+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 999743 2579999999998655 34467899999888899999999999999999999999999998
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.32 E-value=7e-07 Score=92.68 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=85.0
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC----CcEEEEEEhhhhhcccccC---------
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDYRD--------- 137 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~----~~IVGIVt~kDLl~~~~~~--------- 137 (351)
+++++|+|+|.+ ++++++.-..+. .+.+.++.+.|..|||+|+.. +++.|+|....++......
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 567889999986 899999999999 899999999999999998543 3688998888875321100
Q ss_pred ---------------------------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 ---------------------------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ---------------------------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
-.++..+|...+++|++++++..++.+|++-+++++.|++.
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 01234455566789999999999999999999999999987
No 100
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.10 E-value=2.4e-06 Score=87.40 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=82.7
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcE
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 151 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~ 151 (351)
.+.+++++|++ +++++++++++. ++++.|.++++..+||+|++ |+++|+|+.+|++....+. ...++|....++
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56689999986 678899999999 99999999999999999875 8899999999999876543 346776655555
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEE
Q 018757 152 VSEDMPLYDILNEFQKGHSHIAVVY 176 (351)
Q Consensus 152 V~~~~~L~daL~~m~~~~~~~apVV 176 (351)
..++..+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 5567788999999999999888775
No 101
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.01 E-value=1.1e-05 Score=65.34 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3468999974 567899999999 89999999999999999875 78999999999975
No 102
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.97 E-value=1.9e-05 Score=63.31 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=51.9
Q ss_pred hcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 69 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 69 l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+...++.++|.+ .+.++++++++. ++++.|.+++...+||++++ ++++|+|+.+||++
T Consensus 54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 34455679999976 567899999999 99999999999999999865 88999999999975
No 103
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.95 E-value=2.1e-05 Score=64.74 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=49.5
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+||..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999975 677899999999 89999999999999999875 78999999999864
No 104
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.89 E-value=2e-05 Score=74.48 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=38.8
Q ss_pred CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+|+++|.++++++.+++++.++...|.+++++-+||+|+
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~ 211 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD 211 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence 35789999999999999999999999999999999999998
No 105
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=2.4e-05 Score=63.14 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=50.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.+...+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 467899998644567899999999 99999999999999999874 78999999999874
No 106
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.83 E-value=7.7e-05 Score=77.51 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=72.1
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC-
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI- 149 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v- 149 (351)
..+.+|+++|++..+++++++++++. +++++|.++++..+||+|++ ++++|+|+.+|+++..... ....+-.-+-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENP-LELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence 45678999999766889999999999 99999999999999999875 7899999999999764221 11112101111
Q ss_pred -cEecCCCCHHHHHHHHHhCCCcEEEE
Q 018757 150 -PRVSEDMPLYDILNEFQKGHSHIAVV 175 (351)
Q Consensus 150 -~~V~~~~~L~daL~~m~~~~~~~apV 175 (351)
..+... ...+-+..+.+.++..+.|
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEee
Confidence 112222 3456666777788887654
No 107
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=3.7e-05 Score=62.79 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=51.7
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC--CcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~--~~IVGIVt~kDLl~ 132 (351)
+...++.++|+...++.++++++++. ++++.|.++++..+||++++. ++++|+|+..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667889997323678999999999 899999999999999998752 58999999999875
No 108
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.81 E-value=3.6e-05 Score=62.49 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=50.4
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.. ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34678999964 677899999999 99999999999999999875 78999999999874
No 109
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=5.3e-05 Score=62.37 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=37.3
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.++.++|.+++.++++++++.++++.|.+.+...+||+|+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~ 97 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD 97 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence 5688998889999999999999999999999999999987
No 110
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.76 E-value=3.5e-05 Score=80.53 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=79.7
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-------------- 137 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-------------- 137 (351)
...+|+++|+. .++.++++++++. ++.+.|.++++..+||++++ ++++|+|+.+|++......
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 36789999982 3788999999999 99999999999999999976 8999999999998643210
Q ss_pred ------------CcchhhhhccCCcEe---cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 ------------AVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ------------~~~V~dIM~r~v~~V---~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..++.++|.+.++.+ +...+...+.++|.+.++...|++..
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~ 376 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG 376 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH
Confidence 113445655555444 34566677888899998887777653
No 111
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=6.1e-05 Score=60.70 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=49.4
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899964 577899999999 89999999999999999865 78999999999874
No 112
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=6.9e-05 Score=60.44 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=48.9
Q ss_pred cccccccccccCcceEEEcCC--CCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d--~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.+ .+.++.++ +++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 34678999964 56778877 6888 89999999999999999875 88999999999986
No 113
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.71 E-value=7.1e-05 Score=60.01 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=42.1
Q ss_pred eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999999 99999999999999999864478999999999975
No 114
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.69 E-value=7.1e-05 Score=60.38 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=51.3
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+...++.++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 345678999975 678999999999 99999999999999999864 78999999999975
No 115
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.69 E-value=7.5e-05 Score=60.95 Aligned_cols=59 Identities=20% Similarity=0.445 Sum_probs=51.7
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
....+++++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.+
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~~ 124 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIAA 124 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhcC
Confidence 356679999974 678999999999 89999999999999999864 889999999999853
No 116
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.69 E-value=0.00024 Score=71.53 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHhhcCccccccc--ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 57 LTHDETTIIAGALELTEKTAKD--AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 57 L~~~E~~mI~~~l~l~d~tV~d--IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
+..+..+.+....-.....+.. -++.+...+.+.+..++- ++...+.++++.++||.|...++++.+++.+-++...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l 211 (381)
T KOG1764|consen 133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFL 211 (381)
T ss_pred CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHH
Confidence 3445555555544444444422 234444547899999998 8999999999999999995568999999999998764
Q ss_pred ccC----------Ccchhhh---hccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 135 YRD----------AVPLRKM---IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 135 ~~~----------~~~V~dI---M~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
... ..++.++ +...+..+.+++++.+|++.|...++.-+||||.
T Consensus 212 ~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 212 WLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred HHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 322 1222222 1235788999999999999999999999999998
No 117
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.65 E-value=8.7e-05 Score=59.43 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=49.1
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.++.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 678999964 567899999999 89999999999999999875 78999999999875
No 118
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=9.8e-05 Score=59.68 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=50.1
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
.+.++.++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+..|++.+
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFLA 114 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhcC
Confidence 45678999963 678999999999 9999999999999999985 789999999999753
No 119
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.63 E-value=0.00016 Score=57.31 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.8
Q ss_pred ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
++.++|.+ .+.++.+++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 57899975 456799999999 89999999999999999875 78999999999874
No 120
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=0.00012 Score=58.09 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=49.3
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+..++++|.+ .+.++.+++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568999965 567899999999 89999999999999999875 78999999999975
No 121
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.60 E-value=7.1e-05 Score=61.94 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.8
Q ss_pred cccccccccccCcceEEEc----CCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~----~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.+++++|++...++.++ +++++. ++++.|.+++...+||++++.++++|+|+..|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567999997533333443 688998 89999999999999999864358999999999975
No 122
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.60 E-value=0.00018 Score=74.42 Aligned_cols=96 Identities=9% Similarity=0.184 Sum_probs=72.3
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhh----hhccCC
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRK----MIIRRI 149 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~d----IM~r~v 149 (351)
..|.++|++ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+||++..... ++.+ .+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999985 788999999999 99999999999999999875 7899999999999764332 2211 111222
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..+ .....+.+..|.+.+... +|+|-
T Consensus 222 v~~--~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 222 VGI--NGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred hcc--ChhHHHHHHHHHHhCCCE-EEEec
Confidence 222 334778888888888887 56664
No 123
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00012 Score=58.53 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=50.5
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35679999975 677899999999 99999999999999999865 78999999999875
No 124
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.60 E-value=6.9e-05 Score=72.27 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..+..+||.+++++++++++++++.++|++++++.+||+|+
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~ 284 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE 284 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence 45778999999999999999999999999999999999998
No 125
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.60 E-value=0.00012 Score=58.58 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=48.8
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.. .+.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4679999964 577899999999 8999999999999999983 78999999999975
No 126
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.59 E-value=0.00012 Score=58.34 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=50.0
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..++.++|.+ .+.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999975 578899999999 89999999999999999861378999999999875
No 127
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=0.00015 Score=59.58 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=45.5
Q ss_pred cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh
Q 018757 76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 131 (351)
Q Consensus 76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl 131 (351)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3457754 678999999999 89999999999999999875 7899999999985
No 128
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=0.00014 Score=57.87 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=49.3
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+++++|.+ .+.++++++++. ++++.|.+.+..++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5679999965 678899999999 9999999999999999986 78999999999975
No 129
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.57 E-value=7.2e-05 Score=66.27 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
...+.+|.+|++++.++.++.+++++|+.+++..+||+++
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~ 104 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE 104 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence 3456789999999999999999999999999999999987
No 130
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.56 E-value=0.00017 Score=58.20 Aligned_cols=58 Identities=22% Similarity=0.471 Sum_probs=49.4
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhcc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSV 133 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~ 133 (351)
..++.++|.+ .+.++.+++++. ++++.|.+++...+||++++ .++++|+|+..|++++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 57 PSAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 3447888864 678899999999 89999999999999999864 2689999999999863
No 131
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00016 Score=57.93 Aligned_cols=58 Identities=16% Similarity=0.358 Sum_probs=50.6
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+...++.++|.+ .+.+++.++++. ++++.|.+++..++||++++ ++++|+++..|+++
T Consensus 55 ~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 345678899974 678899999999 89999999999999999875 78999999999975
No 132
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00016 Score=57.79 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=49.1
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..++.++|.+ .+.++.+++++. ++++.|.+.+..++||++++ ++++|+|+.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458999974 677899999999 89999999999999999865 78999999999975
No 133
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.55 E-value=0.00012 Score=71.44 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=51.9
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
+.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||+++ ++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999985 678999999999 9999999999999999974 689999999999865
No 134
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.53 E-value=0.00027 Score=73.17 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc---chhhhhccCC
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI 149 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~---~V~dIM~r~v 149 (351)
..++.++|++ ..++++++++++. ++++.|.++++..+||++++ ++++|+|+.+||++....... .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 3578999973 4678999999999 99999999999999999876 899999999999876421110 1112222233
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+.++ -.+.+..|.+.+++++ |+|.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence 333332 3788888999999955 6664
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00019 Score=57.45 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.+ .+.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4578889964 678899999999 8999999999999999986 78999999999874
No 136
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.52 E-value=0.00018 Score=69.84 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=51.2
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
+.+|+++|++ ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4568999985 677899999999 99999999999999999875 789999999999865
No 137
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.52 E-value=0.00021 Score=57.10 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=49.7
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++ + ++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678999975 678899999999 899999999999999998 3 78999999999874
No 138
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00017 Score=58.86 Aligned_cols=58 Identities=16% Similarity=0.399 Sum_probs=50.6
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
...++.++|.+ .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|++++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~~ 125 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLKA 125 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhcC
Confidence 34578899964 678999999999 89999999999999999875 789999999999863
No 139
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00038 Score=72.88 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=75.7
Q ss_pred cccccccCc---ceEEEcCC-CCchHHHHHHHHHcCCcEeeeee-CCCCcEEEEEEhhhhhccccc------C-------
Q 018757 76 AKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDYR------D------- 137 (351)
Q Consensus 76 V~dIMtPr~---~VvtV~~d-~tv~~eal~~m~~~~~sriPVvd-~~~~~IVGIVt~kDLl~~~~~------~------- 137 (351)
..++|.|+. ....++.+ .+++ +...+|.++.|+.+||+- ++..+++|+|..+|+...... .
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 345554433 35556655 8999 899999999999999884 455789999999998643210 0
Q ss_pred --------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 --------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 --------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
...++++|.-.+.+|...++.+-++.+|++-+.....|..+
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~ 678 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN 678 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence 12356776667888999999999999999888887766543
No 140
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00018 Score=60.16 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=51.1
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
....++.++|.+ .+.++++++++. ++++.|.+.+.+++||++ + |+++|+|+.+|++++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~~ 135 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLRA 135 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhcC
Confidence 356789999964 678999999999 899999999999999998 4 889999999998753
No 141
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00021 Score=57.27 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=50.3
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
+.+++++|.+ .+..+.+++++. ++++.|.+++...+||++++ ++++|+|+..|++++
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999975 578899999999 89999999999999999875 789999999999864
No 142
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.48 E-value=0.00027 Score=56.21 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=48.6
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.++.++|.+ .+.++..++++. ++++.|.+++...+||++++ ++++|+|+..|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 467888875 678999999999 89999999999999999874 78999999999875
No 143
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00024 Score=57.97 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=45.2
Q ss_pred ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.++|. .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 44554 2567999999999 99999999999999999875 78999999999875
No 144
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.48 E-value=0.00041 Score=55.68 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=47.8
Q ss_pred ccccccccCcceEEEcCCCCchHHHHHHHHH-cCCcEeeeeeCCCC-cEEEEEEhhhhh
Q 018757 75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL 131 (351)
Q Consensus 75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-~~~sriPVvd~~~~-~IVGIVt~kDLl 131 (351)
++.++|+. .++++.++.++. ++.+.|.+ +++.++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 678999999999 99999999 799999999975 4 899999999974
No 145
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00021 Score=58.12 Aligned_cols=58 Identities=16% Similarity=0.396 Sum_probs=50.6
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
...++.++|.. ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++..|++++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~~ 122 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLKA 122 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhcC
Confidence 45678899964 678899999999 89999999999999999875 889999999999753
No 146
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.47 E-value=0.00044 Score=71.52 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=70.3
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhh----hccCC
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI 149 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dI----M~r~v 149 (351)
..++++|++ +++++++++++. +++++|.++++..+||++++ ++++|+|+.+||++..... +..+. .....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 569999985 788999999999 99999999999999999865 7899999999999754322 22111 01111
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.......+.+..|.+.+...+ |+|-
T Consensus 220 --v~~~~~~~~ra~~Lv~aGVd~i-~~D~ 245 (475)
T TIGR01303 220 --VGINGDVGGKAKALLDAGVDVL-VIDT 245 (475)
T ss_pred --eeeCccHHHHHHHHHHhCCCEE-EEeC
Confidence 2233456677777777777764 5553
No 147
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.00041 Score=72.09 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=54.9
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
.+.+|+++|++..++++++++.++. +++++|.+++...+||++++ ++++|+|+.+||++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 3567999999766889999999999 99999999999999999876 7899999999999764
No 148
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.46 E-value=0.00024 Score=60.12 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.+|+++|++ .+.++.+++++. ++++.|.+.++..+||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35679999975 567899999999 8999999999999999985 78999999999875
No 149
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.46 E-value=0.00015 Score=75.37 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=72.5
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCC
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRI 149 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v 149 (351)
.+.+|.++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... .+..+-.-+-.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999765688999999999 99999999999999999875 78999999999987643211 11111101101
Q ss_pred --cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 150 --PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 150 --~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..|.....-.+-++.+.+.+..++ ++|-
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i-~iD~ 268 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVV-VLDS 268 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEE-EEeC
Confidence 123333344566677777888765 4443
No 150
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00027 Score=57.41 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=50.3
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
...++.++|.. .+.++++++++. ++++.|.+.+...+||++++ ++++|+++..|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 56678899953 678999999999 99999999999999999875 78999999999975
No 151
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00019 Score=58.24 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=50.5
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+...++.++|.+ .+.++++++++. ++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678999964 678999999999 9999999999999999986 78999999999975
No 152
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.45 E-value=0.00043 Score=45.93 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=27.9
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++++.+++++.+++..|.+.+.+.++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 31 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDE 31 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence 3567899999999999999999999999987
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.45 E-value=0.00022 Score=57.74 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=47.3
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
...++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 345889997644433334599998 89999999999999999865 78999999999874
No 154
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.43 E-value=0.00028 Score=56.43 Aligned_cols=56 Identities=18% Similarity=0.450 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++++ +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 45678999974 678899999999 89999999999999999863 7999999999874
No 155
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.43 E-value=0.00026 Score=57.37 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=50.6
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
....++.++|.+ .+.+++.++++. ++++.|.+.++..+||+++ ++++|+|+.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 678999999999 8999999999999999975 78999999999975
No 156
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00026 Score=58.89 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=48.9
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..++.++|.+ ++..+.+++++. ++++.|.+.+..++||+++ ++++|+++.+|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 4478999974 678899999999 8999999999999999986 78999999999975
No 157
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.41 E-value=0.00033 Score=55.55 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=48.8
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468899975 677899999999 89999999999999999875 78999999999874
No 158
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.41 E-value=0.00035 Score=55.57 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=50.1
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|.+ .+..+++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 45678999964 678899999999 89999999999999999875 78999999999875
No 159
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.41 E-value=0.00033 Score=55.64 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=47.0
Q ss_pred ccccccccccCcceEEEcC-CCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..++.++|.. .+..+.. ++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4678999964 3344555 99998 89999999999999999865 78999999999875
No 160
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00022 Score=57.34 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=47.3
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
.+.++.++|.+ .+.++++++++. ++++.|.+.+ .+||++++ ++++|+++.+|++++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~~ 116 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILKA 116 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhcC
Confidence 35679999975 577899999999 8999998865 59999865 789999999999753
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.39 E-value=0.00039 Score=55.38 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=47.4
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.++.++|.+ ...+++++.++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357888975 567899999999 9999999999999999973 78999999999875
No 162
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.39 E-value=0.00036 Score=55.84 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.+++++|.+ .+..+++++++. ++++.|.+++...+||+++ ++++|+|+..|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 35578899964 678899999998 8999999999999999975 68999999999875
No 163
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.00029 Score=56.41 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..++.++|.+ .+.++.+++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 5678999975 577899999999 9999999999999999986 78999999999975
No 164
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00034 Score=55.86 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=49.2
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+..+.++|.. .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 55 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 55 DAPVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CCcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 3468899964 678999999999 99999999999999999875 78999999999874
No 165
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00038 Score=54.90 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+..+.++|.+ .+.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899965 678999999999 9999999999999999985 78999999999873
No 166
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00041 Score=55.09 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=42.0
Q ss_pred eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~~ 96 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLKP 96 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhcC
Confidence 67899999999 89999999999999999875 789999999999853
No 167
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00066 Score=54.27 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=48.9
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.+ .+.++..++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468899864 678899999999 89999999999999999875 78999999999874
No 168
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.29 E-value=0.00093 Score=56.94 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=28.6
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.++++.+++++.++++.|.+++...+||+|+
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~ 32 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS 32 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 4678999999999999999999999999987
No 169
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00043 Score=56.38 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=48.6
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+.++|.. +++++++++++. ++++.|.+++...+||++++ ++++|+++..|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 357888864 678999999999 89999999999999999875 78999999999975
No 170
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.28 E-value=0.00051 Score=54.83 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.. .+.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 4678899964 678999999999 9999999999999999986 78999999999974
No 171
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.28 E-value=0.00056 Score=45.35 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=40.6
Q ss_pred eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
+.++++++++. ++++.|.+.++..+||++++ ++++|+++.++++..
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35688999998 89999999999999999875 789999999998754
No 172
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.00067 Score=55.96 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=45.2
Q ss_pred ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.++|. .++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus 74 ~~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred ccccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 34554 3678899999999 99999999999999999875 78999999999975
No 173
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00096 Score=53.12 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=47.5
Q ss_pred ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.++|.+ .+.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 48888864 677899999999 89999999999999999875 88999999999864
No 174
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00053 Score=56.49 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeC-CCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~-~~~~IVGIVt~kDLl~ 132 (351)
.+.++.++|++ +++++++++++. ++++.|.+.++..+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999974 678999999998 8999999999999999853 3478999999999875
No 175
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.19 E-value=0.00083 Score=53.50 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.5
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+.++|.+ .+..++++.++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 568888863 678899999999 89999999999999999875 78999999999874
No 176
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.15 E-value=0.00074 Score=53.90 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+.++|. .+.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 34666664 457899999999 89999999999999999875 78999999999874
No 177
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.15 E-value=0.0017 Score=65.33 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-CCcchhhhhccC
Q 018757 70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRR 148 (351)
Q Consensus 70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-~~~~V~dIM~r~ 148 (351)
...-+++++||.|... ....+.+ . +++. ++.+.+.|++. |+++..+...+... ....+.+ +...
T Consensus 270 ~~~~l~a~~~m~~~~~--~~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (382)
T TIGR03415 270 PLNVLTARSLMRPLTD--LEHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAA 334 (382)
T ss_pred cccceeHHHHhccccc--ccccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchhh-hccc
Confidence 3556788999965332 2223322 2 3333 78888888864 78887776543221 2335666 4778
Q ss_pred CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+.+|++++++.+++..+......+ +|+|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 363 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGAI-LLVEN 363 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCCe-EEeeC
Confidence 889999999999999999888774 46666
No 178
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.14 E-value=0.0019 Score=53.64 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=29.6
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
+++.+++++.++.++++.|.+++...+||+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~ 33 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE 33 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 56788999999999999999999999999987
No 179
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.10 E-value=0.0014 Score=66.75 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=37.5
Q ss_pred CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
..+++++|.+++.++.+++++.++++.|.+++...+||+|+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~ 374 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE 374 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 45788998899999999999999999999999999999987
No 180
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.04 E-value=0.0013 Score=52.96 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=43.7
Q ss_pred ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 79 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 79 IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 677899999999 8999999999999999953 78999999999975
No 181
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.96 E-value=0.0013 Score=53.15 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=47.4
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCc---EeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~s---riPVvd~~~~~IVGIVt~kDLl~ 132 (351)
.+.+++++|.+ .+.++++++++. ++++.|.+++.. ..||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 678899999999 899999988753 44678765 89999999999875
No 182
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.92 E-value=0.0021 Score=60.58 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=36.5
Q ss_pred cchhhhhccC-CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 139 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 139 ~~V~dIM~r~-v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.+++++|.++ ++++++++++.++++.|.+.+...++|+|+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~ 195 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE 195 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence 4688998888 899999999999999999999999999987
No 183
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0029 Score=62.17 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHHHhhcCcccccccccccCcceEEEcC-CCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc
Q 018757 61 ETTIIAGALELTEKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV 139 (351)
Q Consensus 61 E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~ 139 (351)
-+..++++-...-.++++||.+ .+...... ..... .++..+...+.+.+.+++. .++.+|+|+..++..+
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------ 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------ 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc------
Confidence 4667777777778899999985 32222222 22333 5788888888877777774 4679999999877654
Q ss_pred chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.+..++..++.++++.+.+..+.+...+++ |+|+
T Consensus 332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde 365 (386)
T COG4175 332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE 365 (386)
T ss_pred ----cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence 246778889999999999999999988765 6666
No 184
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.90 E-value=0.0018 Score=62.82 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=66.9
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Cc------chhhh
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKM 144 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~------~V~dI 144 (351)
.++.++|.| ++++++++++. ++++.|++++...+||+|+. |.++|+|+..|++...... .. .+..+
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~ 207 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL 207 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence 458899964 45899999999 99999999999999999875 7899999999999865432 11 12111
Q ss_pred hccCCcEecCCCCHHHHHHHH
Q 018757 145 IIRRIPRVSEDMPLYDILNEF 165 (351)
Q Consensus 145 M~r~v~~V~~~~~L~daL~~m 165 (351)
....+.|+..+++.++.+.+
T Consensus 208 -~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 208 -SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred -CCCeEEEEeccCHHHHHHHh
Confidence 22346799999999999887
No 185
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0017 Score=55.21 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
...++.++|.+ .+.+++.++++. ++++.|.+.+++++||+++ ++++|+|+.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678899975 678999999999 8999999999999999986 78999999999874
No 186
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.85 E-value=0.0019 Score=68.06 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=51.6
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC-CcEEEEEEhhhhhccc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD 134 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~-~~IVGIVt~kDLl~~~ 134 (351)
+.++.++|++ ++.++++++++. ++++.|.+++.+.+||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 677899999999 999999999999999998653 4799999999998764
No 187
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.84 E-value=0.0021 Score=66.85 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=63.3
Q ss_pred cCCCCCHHHHHHHHHhhc---CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhh
Q 018757 53 KGGDLTHDETTIIAGALE---LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKN 129 (351)
Q Consensus 53 ~~G~L~~~E~~mI~~~l~---l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kD 129 (351)
..|.++ ++++..+++. -...+|+++||. ++++++.++-+- +|+-.|.++++.++||+++ |+++|+|+..|
T Consensus 192 ~~GIvT--~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~d 264 (610)
T COG2905 192 LLGIVT--RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTD 264 (610)
T ss_pred ccceee--hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHH
Confidence 466665 5666777765 235689999995 889999999999 9999999999999999975 78999999999
Q ss_pred hhcccc
Q 018757 130 LLSVDY 135 (351)
Q Consensus 130 Ll~~~~ 135 (351)
|++...
T Consensus 265 Il~l~s 270 (610)
T COG2905 265 ILRLFS 270 (610)
T ss_pred HHHhhC
Confidence 997644
No 188
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.77 E-value=0.0049 Score=47.96 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=46.8
Q ss_pred cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++|.. ++.+++.++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677864 677899999999 99999999999999999876 89999999999875
No 189
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0031 Score=49.97 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=46.6
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
..+.++|.. .+.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 356778864 567899999999 9999999999999999984 68999999999875
No 190
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.70 E-value=0.0026 Score=50.28 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+.++.++|.+ .+.++++++++. ++.+.|.+ . ..+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568899964 577899999998 89998888 3 347888765 78999999999975
No 191
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.68 E-value=0.0026 Score=65.33 Aligned_cols=59 Identities=20% Similarity=0.387 Sum_probs=52.9
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
+.+++++|++ .+++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..
T Consensus 142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 5679999974 3778999999999 99999999999999999976 8999999999999764
No 192
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.59 E-value=0.0069 Score=61.48 Aligned_cols=90 Identities=10% Similarity=0.060 Sum_probs=68.0
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Ccc-hhhhh---
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVP-LRKMI--- 145 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~-V~dIM--- 145 (351)
..+++++|. ++.++++++++. ++++.|++++....+|+|+. |.++|+||..|++.....+ ... -.+.+
T Consensus 254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 345788886 457899999999 99999999999999999875 8899999999999765321 111 11111
Q ss_pred ccCCcEecCCCCHHHHHHHHHh
Q 018757 146 IRRIPRVSEDMPLYDILNEFQK 167 (351)
Q Consensus 146 ~r~v~~V~~~~~L~daL~~m~~ 167 (351)
......++..+++.++.+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 1234668889999999998843
No 193
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.013 Score=60.34 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=54.3
Q ss_pred cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
.-.+..++++|.+ +++++.+++..+ ++.+.+.+++...+||+|++ ++++|+|+..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4567789999986 588999999998 99999999999999999986 8999999999998654
No 194
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.56 E-value=0.015 Score=57.64 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=53.7
Q ss_pred CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
.++.++..+||. ..+++.+.+|+. .+.+.|...++.-+||++++ .+++|+|+.+|+++++.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq 306 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHH
Confidence 456778999995 568999999999 89999999999999999986 78999999999997653
No 195
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.031 Score=56.39 Aligned_cols=112 Identities=10% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 56 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 56 ~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
.++..+.+.+ .=....+.++|+++. ++.+.+.++. ++-+++.+++-.++||++++ |++|-+|+..||.+...
T Consensus 157 ~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 157 IITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRD 228 (503)
T ss_pred EEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcC
Confidence 3455555555 334567899999865 7899999999 89999999999999999986 99999999999986531
Q ss_pred ---cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 136 ---RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 136 ---~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
.....-+++|.... |.....=..-+.++.+.++..+ |+|.
T Consensus 229 yPlask~~~kqll~gAa--iGTre~dK~rl~ll~~aGvdvv-iLDS 271 (503)
T KOG2550|consen 229 YPLASKDSTKQLLCGAA--IGTRDDDKERLDLLVQAGVDVV-ILDS 271 (503)
T ss_pred CCccccCcccceeeeec--cccccchhHHHHHhhhcCCcEE-EEec
Confidence 11112223333222 2223334556777777887754 5554
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.59 E-value=0.068 Score=53.53 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=49.5
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
..+.+.|.+ .+.++++++++. +++..|.++++. +||++++ ++++|+|+..+++.+..
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 357888864 667899999999 999999999999 9999876 89999999999987653
No 197
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=93.56 E-value=0.037 Score=49.00 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh
Q 018757 1 MAPIVRVLLCLFFPISYPISKILDLML 27 (351)
Q Consensus 1 ~Ap~l~~~~~i~~Plv~pls~ll~~ll 27 (351)
++|++++++++++|++|++.++.++++
T Consensus 122 ~a~~l~~~~~l~~P~~~~l~~i~~~~~ 148 (183)
T PF01595_consen 122 LAPLLRVLMILLYPLVWLLSFISNKIL 148 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999888664
No 198
>PRK11573 hypothetical protein; Provisional
Probab=93.50 E-value=0.22 Score=50.74 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=59.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----C----cchhhhhccCCcEecCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIRRIPRVSED 155 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~----~~V~dIM~r~v~~V~~~ 155 (351)
++..|+++.++. ++++.|++++..-.-|+|+. |...|+||..|++...-.+ + ..+..+ ....+.|+..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 567899999999 99999999998888889875 8899999999999754321 1 011111 2234668889
Q ss_pred CCHHHHHHHH
Q 018757 156 MPLYDILNEF 165 (351)
Q Consensus 156 ~~L~daL~~m 165 (351)
+++.++-+.+
T Consensus 340 ~~l~d~~~~l 349 (413)
T PRK11573 340 ANVREINKAF 349 (413)
T ss_pred eEHHHHHHHh
Confidence 9999998887
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.2 Score=50.92 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
...+.++|.+ .+.++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3457777754 567899999999 899999997776 9999875 89999999999998764
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=89.13 E-value=1.8 Score=44.19 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=60.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC------C---cchhhhhccCCcEecCC
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD------A---VPLRKMIIRRIPRVSED 155 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~------~---~~V~dIM~r~v~~V~~~ 155 (351)
++..+++..++. ++++.|++.+..-..|+|+. |.+.|+||..|++...... . ..+... ..+-..|...
T Consensus 280 ~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~-~~~~~~v~G~ 356 (429)
T COG1253 280 PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR-DDDGWLVDGR 356 (429)
T ss_pred CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCcCcccccccccceEe-cCCcEEEecc
Confidence 567899999999 99999999998888888875 8899999999999764321 1 111111 1223568899
Q ss_pred CCHHHHHHHHH
Q 018757 156 MPLYDILNEFQ 166 (351)
Q Consensus 156 ~~L~daL~~m~ 166 (351)
+++.++.+.+-
T Consensus 357 ~~l~e~~~~l~ 367 (429)
T COG1253 357 VPLEELEELLG 367 (429)
T ss_pred ccHHHHHHHhC
Confidence 99999888774
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.27 E-value=1.6 Score=42.20 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=42.6
Q ss_pred cEeeeeeCCCCcEEEEEEhhhhhcccccC-----------------CcchhhhhccCC----cEecCCCCHHHHHHHHHh
Q 018757 109 SRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRRI----PRVSEDMPLYDILNEFQK 167 (351)
Q Consensus 109 sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----------------~~~V~dIM~r~v----~~V~~~~~L~daL~~m~~ 167 (351)
+++.|.++ |+++=+=+..+++..+.++ ...+.+.|.... -.+.......+++..+..
T Consensus 204 dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~ 281 (309)
T COG1125 204 DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLA 281 (309)
T ss_pred ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHh
Confidence 46777764 7888888888887654432 122334433221 113444555668888888
Q ss_pred CCCcEEEEEec
Q 018757 168 GHSHIAVVYKD 178 (351)
Q Consensus 168 ~~~~~apVVDe 178 (351)
.+...+||+|+
T Consensus 282 ~~~~~~~Vvd~ 292 (309)
T COG1125 282 RGRSVLPVVDE 292 (309)
T ss_pred cCCceeEEECC
Confidence 88888899988
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=83.10 E-value=2.5 Score=42.71 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
.+-.++|.--.+++.++.++++. .-+..+++++-.--.|+|+- |.+.|+||..|++...
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEI 323 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEI 323 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHH
Confidence 44556665556889999999999 78888888877777788875 8999999999999643
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=78.72 E-value=5.3 Score=43.68 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=37.7
Q ss_pred CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757 138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178 (351)
Q Consensus 138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe 178 (351)
...|.++|.+++.+|..+++..|+-+.++...++..|+||.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s 627 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES 627 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC
Confidence 45789999999999999999999999998888999999987
No 204
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.68 E-value=3.1 Score=44.51 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=46.6
Q ss_pred cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
..-.|.| ..+++++++++. .+..+++.-|...+.|+... .+++|+++.+|++..
T Consensus 692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 3556765 558999999999 89999999999999999875 678999999999854
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=73.60 E-value=4.1 Score=41.18 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=39.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 134 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~ 134 (351)
++.++++++++. +++..+.++++. +||+++ |+++|+|+..+++.+.
T Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 334 APTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 567899999999 899998888766 788874 8999999999998764
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=56.72 E-value=8 Score=42.38 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhccc
Q 018757 73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVD 134 (351)
Q Consensus 73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~~ 134 (351)
.+.|.++|.. +|..+..+.|.. |..+.+.......+|++++. .--++|.|..+.|....
T Consensus 587 ~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 587 TVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred EEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 4678999984 899999999999 88777777669999999853 24588999999987554
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=55.82 E-value=18 Score=35.25 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=42.8
Q ss_pred CcccccccccccCcc--eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757 71 LTEKTAKDAMTPISK--AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132 (351)
Q Consensus 71 l~d~tV~dIMtPr~~--VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~ 132 (351)
+...++.+.|.+... =-.+.....-. +++..+...+.+.+||+|++ ++++|.|+..+|+.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 345667777765321 11233344455 67888888999999999986 99999999999875
No 208
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=50.98 E-value=23 Score=38.20 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.8
Q ss_pred cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
.+++|-. .++++...++.+ -+++++++-|.+...|..+ |++.|+|+.||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 4677743 457888888888 8999999999999988763 889999999999865
No 209
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=50.39 E-value=44 Score=32.09 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=63.4
Q ss_pred cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------Ccchhhh
Q 018757 74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKM 144 (351)
Q Consensus 74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------~~~V~dI 144 (351)
..++++.. ..+.|++.-.+. -.++.++.+++.-..|+|+- |-+-|+|+..|++...-.+ ...+..+
T Consensus 133 F~i~~lLR---Pav~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLR---PAVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhcc---cceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 34566664 456899999998 89999999988888888875 7899999999999764321 2234444
Q ss_pred hccCCcEecCCCCHHHHHHHHH
Q 018757 145 IIRRIPRVSEDMPLYDILNEFQ 166 (351)
Q Consensus 145 M~r~v~~V~~~~~L~daL~~m~ 166 (351)
.+.-+.|..-+++++-=+.|-
T Consensus 208 -s~~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 208 -SRHTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred -cCCceEEEecccHHHHHHHhc
Confidence 455667777777777665553
No 210
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.16 E-value=21 Score=35.74 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=39.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757 85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 135 (351)
Q Consensus 85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~ 135 (351)
.+.+++.++++. +.+..+.+.+. .+||++++ ++++|++....++.+..
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAPC-PVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 667899999998 78877776654 58899886 89999999999987653
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.53 E-value=50 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=29.3
Q ss_pred chHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757 95 LTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 133 (351)
Q Consensus 95 v~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~ 133 (351)
++ .+.+.+.+.|-+-++|+++ +++.|+|++||+.+-
T Consensus 415 l~-~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 415 LD-AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HH-HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 44 5666777888899999985 689999999999864
Done!