BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018759
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens
GN=UVRAG PE=1 SV=1
Length = 699
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 66/299 (22%)
Query: 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97
L RL A+ Q Q QK+ I+ K SNEL++ E L+ + L+++
Sbjct: 196 LLRLHRAQCAIKQT----QVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNEL 251
Query: 98 MRSK--VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ-------ESNRLLAGEKGY 148
R K + +E A +++++++ + G+A S +LQ E + ++
Sbjct: 252 ERQKKALGREVALLHKQQIALQDK-----GSAFSAEHLKLQLQKESLNELRKECTAKREL 306
Query: 149 GHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPG 208
Q +R RQ ++S++S++YP+ + + + F G + NS + + G
Sbjct: 307 FLKTNAQLTIRCRQ--LLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDG 358
Query: 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGS 268
S+ A ALGY AH+VS+I+ +L+VPLRYP+ GS
Sbjct: 359 SI---------------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGS 391
Query: 269 HTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
+ I D NI K EFPL+ +G + + Y V+LLNK LR
Sbjct: 392 RSTIKD-------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLR 437
>sp|O60149|ATG14_SCHPO Autophagy-related protein 14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atg14 PE=3 SV=2
Length = 474
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 23/120 (19%)
Query: 204 PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPL 263
P N TI L L+ P DK A ++G++AH++ ++ YLE L YP+
Sbjct: 334 PGNHDEFTIRNLRLSFEP--------DKINNVEMAASIGFLAHLLQTLSKYLEKELAYPI 385
Query: 264 RLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGT 323
S + I D T D+ + I FPL+ + +A++LLN+
Sbjct: 386 LCASSRSSILDTL-----TPDIPTRI----------FPLYPATRPIELFEHAIYLLNQDV 430
>sp|Q8R5M4|OPTN_RAT Optineurin OS=Rattus norvegicus GN=Optn PE=2 SV=3
Length = 585
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 26/183 (14%)
Query: 22 DPENVKVIEWEDYDQELARLW----SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
DPE+V IE E + ++A L+ + LS+A+ K+ LQ+K Q+L + + + N
Sbjct: 295 DPESVG-IEVETLNVQVASLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN 353
Query: 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137
E +E+ R+L ++ SMRS+++ E AK +EE+ + T + K LQE
Sbjct: 354 EKQELV--YSNRKLELQVESMRSEIKMEQAKTEEEKSRL--------ATLQATHDKLLQE 403
Query: 138 SNRLL----------AGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQEL 187
N+ L A + LQ+L + L + +Q + S+ + +K + KQE++L
Sbjct: 404 HNKALRTIEELTKQQAEKVDKVQLQELSEKLELAEQALASKQLQMDEMKQTIA-KQEEDL 462
Query: 188 ESF 190
E+
Sbjct: 463 ETM 465
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 19 KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
+ ++P+ +++ + LA+L +AL++A +K + + +KL+ L + E L + E
Sbjct: 3211 RVVEPKRIRM------NAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEE 3264
Query: 79 L----EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR 134
L EEM +LE +L+ ++ +E + EE L V L+A LS
Sbjct: 3265 LRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLLAAAFLSYMGPF 3324
Query: 135 LQESNRLLAGEKGYGHLQKLQ 155
L + + G + +LQ
Sbjct: 3325 LTNYRDEIVNQIWIGKIWELQ 3345
>sp|O45420|PLHD1_CAEEL Pleckstrin homology domain-containing family D member 1
OS=Caenorhabditis elegans GN=F31D4.5 PE=3 SV=2
Length = 570
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111
+++K++ +++L++ + + E R++EL + +E LEA R EK+ +K K+D +N +
Sbjct: 216 NEEKKSYEERLEAEAKARKEEHDRADELAKDKEELEAER---EKLIRTTKKLKDDLQNVK 272
Query: 112 ERLSME---VRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIS 167
L M ++L +L+ + LQ + L EK H Q LQ+++R R++ +I
Sbjct: 273 NELKMTNEMKKTLEQEKMSLNSKTEHLQANMESLNIEKEKIHEQ-LQEIVREREKVLID 330
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 19 KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
+ ++P+ +++ + +A+L +AL++A +K + + +KL+ L + E L + E
Sbjct: 3240 RVVEPKRIRM------NAAMAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEE 3293
Query: 79 L----EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 129
L EEM +LE +L+ ++ +E + EE L V L+A LS
Sbjct: 3294 LRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLIAAAFLS 3348
>sp|Q5R706|KIF3C_PONAB Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1
Length = 793
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL--VAGTALSVARKR 134
N L+E +ERLE + ++ RS V +E K EE+ M + L T L A+ +
Sbjct: 459 NYLQEQKERLEEEKAAIQ--DDRSLVSEEKQKLLEEKEKMLEKDLRREQQATELLAAKYK 516
Query: 135 LQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQ 168
ES L+ G H + QKML +++Q + Q
Sbjct: 517 AMESKLLIGGRNIMDHTNEQQKMLELKRQEIAEQ 550
>sp|B1LJT9|MUKB_ECOSM Chromosome partition protein MukB OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=mukB PE=3 SV=1
Length = 1486
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQEL-ARLWSLSSALSQADDKKQTL- 58
+EQR R++Q + + +N + E E QEL AR+ SLS ++S A +++ TL
Sbjct: 525 LEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMTLR 584
Query: 59 --QQKLQSLIQ 67
Q++LQS IQ
Sbjct: 585 QEQEQLQSRIQ 595
>sp|B7NM50|MUKB_ECO7I Chromosome partition protein MukB OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=mukB PE=3 SV=1
Length = 1486
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQEL-ARLWSLSSALSQADDKKQTL- 58
+EQR R++Q + + +N + E E QEL AR+ SLS ++S A +++ TL
Sbjct: 525 LEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMTLR 584
Query: 59 --QQKLQSLIQ 67
Q++LQS IQ
Sbjct: 585 QEQEQLQSRIQ 595
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 31.6 bits (70), Expect = 9.3, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 47 ALSQADDKK-----QTLQQKLQSLIQVKAESLKRSNELE-EMRERLEARRLLMEKMSMRS 100
AL + + ++ + +Q+ + L + K E L++ EL+ + +ERL+ L + R
Sbjct: 2738 ALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERL 2797
Query: 101 KVEKEDAKNQEERLSMEVRSLLVAGTALS-VARKRLQESNRLLAGEKGYGHLQKLQKMLR 159
+ E+E + ++ERL E + L L ++RLQ+ L E+ LQK +++ R
Sbjct: 2798 QKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQ--ERLQKEEELKR 2855
Query: 160 MRQQ 163
Q+
Sbjct: 2856 QEQE 2859
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,196,134
Number of Sequences: 539616
Number of extensions: 4495029
Number of successful extensions: 24876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 771
Number of HSP's that attempted gapping in prelim test: 22493
Number of HSP's gapped (non-prelim): 2942
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)