Query 018759
Match_columns 351
No_of_seqs 165 out of 215
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10186 Atg14: UV radiation r 100.0 9.2E-41 2E-45 318.1 29.5 261 40-341 21-286 (302)
2 KOG2896 UV radiation resistanc 100.0 1E-31 2.2E-36 260.5 23.8 114 207-340 208-321 (377)
3 KOG4398 Predicted coiled-coil 99.3 1.8E-11 3.9E-16 115.9 14.5 102 208-343 145-261 (359)
4 PF04111 APG6: Autophagy prote 99.1 3E-08 6.4E-13 97.3 21.7 99 209-330 150-256 (314)
5 KOG2751 Beclin-like protein [S 98.1 0.0005 1.1E-08 69.5 21.5 94 211-328 285-383 (447)
6 PF08317 Spc7: Spc7 kinetochor 92.7 11 0.00024 37.2 18.0 122 42-178 173-297 (325)
7 PF09726 Macoilin: Transmembra 92.5 12 0.00026 41.0 19.1 31 45-75 459-489 (697)
8 PF10186 Atg14: UV radiation r 91.7 12 0.00026 35.4 18.3 67 76-142 69-135 (302)
9 PRK11637 AmiB activator; Provi 91.4 18 0.0004 36.8 19.2 41 79-119 91-131 (428)
10 PF11932 DUF3450: Protein of u 91.2 8.4 0.00018 36.5 14.5 74 45-125 27-100 (251)
11 COG1579 Zn-ribbon protein, pos 90.1 10 0.00022 36.3 13.9 8 213-220 203-210 (239)
12 PRK10869 recombination and rep 89.4 10 0.00022 40.3 14.8 25 23-47 199-223 (553)
13 PRK09039 hypothetical protein; 88.7 28 0.0006 34.9 17.0 17 157-173 191-207 (343)
14 TIGR00634 recN DNA repair prot 88.7 14 0.00029 39.3 15.1 92 44-139 264-359 (563)
15 TIGR03185 DNA_S_dndD DNA sulfu 88.0 21 0.00045 38.6 16.2 33 137-169 304-336 (650)
16 PRK12704 phosphodiesterase; Pr 87.3 43 0.00094 35.5 17.9 12 310-321 381-392 (520)
17 COG0497 RecN ATPase involved i 86.5 19 0.00041 38.5 14.4 79 43-128 266-344 (557)
18 PLN03094 Substrate binding sub 86.1 29 0.00062 35.3 14.9 16 28-43 226-241 (370)
19 TIGR03185 DNA_S_dndD DNA sulfu 85.9 48 0.001 35.8 17.5 36 33-68 377-413 (650)
20 TIGR03319 YmdA_YtgF conserved 85.7 52 0.0011 34.8 17.9 10 311-320 376-385 (514)
21 PF10267 Tmemb_cc2: Predicted 85.6 11 0.00023 38.7 11.7 24 237-260 344-367 (395)
22 TIGR01069 mutS2 MutS2 family p 85.1 33 0.00072 38.1 16.1 75 35-112 485-560 (771)
23 COG3883 Uncharacterized protei 84.7 41 0.00088 32.7 16.6 82 41-125 33-114 (265)
24 PF06248 Zw10: Centromere/kine 84.2 56 0.0012 34.9 16.9 47 127-173 123-174 (593)
25 COG4942 Membrane-bound metallo 84.1 21 0.00045 36.9 12.9 29 151-179 103-131 (420)
26 PRK09343 prefoldin subunit bet 83.8 26 0.00056 29.8 13.4 92 33-132 8-101 (121)
27 TIGR02680 conserved hypothetic 83.7 84 0.0018 37.2 19.3 35 31-65 853-887 (1353)
28 PF10392 COG5: Golgi transport 83.7 27 0.00059 29.9 14.5 81 41-121 28-109 (132)
29 KOG0243 Kinesin-like protein [ 82.8 92 0.002 35.8 18.2 134 36-173 398-552 (1041)
30 COG3883 Uncharacterized protei 82.0 28 0.00061 33.8 12.3 80 34-116 33-112 (265)
31 PF04100 Vps53_N: Vps53-like, 81.9 62 0.0013 32.9 15.4 130 40-173 19-181 (383)
32 PF12325 TMF_TATA_bd: TATA ele 81.4 33 0.00072 29.3 12.4 26 44-69 21-46 (120)
33 KOG0250 DNA repair protein RAD 80.9 1.1E+02 0.0025 35.1 18.4 47 27-73 269-315 (1074)
34 KOG0994 Extracellular matrix g 80.9 68 0.0015 37.4 16.1 27 308-334 1723-1751(1758)
35 KOG0971 Microtubule-associated 79.8 77 0.0017 36.0 15.8 103 36-142 382-491 (1243)
36 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.6 39 0.00084 28.9 12.7 7 80-86 62-68 (132)
37 PF08614 ATG16: Autophagy prot 79.5 22 0.00047 32.5 10.3 27 42-68 77-103 (194)
38 PF11180 DUF2968: Protein of u 79.1 32 0.0007 31.8 11.1 73 90-162 107-181 (192)
39 PHA02562 46 endonuclease subun 78.9 87 0.0019 32.6 16.3 54 40-93 300-353 (562)
40 PRK00409 recombination and DNA 78.6 80 0.0017 35.2 16.1 74 36-119 491-565 (782)
41 PRK12705 hypothetical protein; 78.4 89 0.0019 33.2 15.6 12 251-262 294-305 (508)
42 PF13747 DUF4164: Domain of un 78.3 34 0.00074 27.6 12.2 27 43-69 5-31 (89)
43 PRK00409 recombination and DNA 77.3 58 0.0012 36.3 14.5 25 310-335 712-736 (782)
44 PF10498 IFT57: Intra-flagella 76.7 90 0.0019 31.6 14.6 27 42-68 230-256 (359)
45 KOG0996 Structural maintenance 76.3 97 0.0021 36.1 15.7 50 296-351 693-746 (1293)
46 KOG0980 Actin-binding protein 76.1 1.1E+02 0.0024 34.6 15.8 24 45-68 332-355 (980)
47 PF09726 Macoilin: Transmembra 76.0 1.3E+02 0.0029 33.2 19.1 32 39-70 474-505 (697)
48 KOG0994 Extracellular matrix g 75.6 1E+02 0.0022 36.0 15.6 25 34-58 1520-1544(1758)
49 PF12072 DUF3552: Domain of un 75.4 67 0.0014 29.5 16.8 51 76-126 77-127 (201)
50 PRK03918 chromosome segregatio 74.9 1.4E+02 0.0031 33.0 19.5 8 269-276 814-821 (880)
51 TIGR01069 mutS2 MutS2 family p 74.6 61 0.0013 36.1 13.8 25 310-335 701-725 (771)
52 COG1579 Zn-ribbon protein, pos 74.6 83 0.0018 30.2 17.3 12 158-169 161-172 (239)
53 PF12128 DUF3584: Protein of u 74.6 1.8E+02 0.0039 34.0 18.8 34 31-64 598-632 (1201)
54 PRK11637 AmiB activator; Provi 74.5 1.1E+02 0.0023 31.4 19.8 8 237-244 343-350 (428)
55 PHA03246 large tegument protei 73.9 67 0.0015 40.0 14.2 137 35-173 996-1154(3095)
56 KOG0976 Rho/Rac1-interacting s 73.9 1.2E+02 0.0025 34.2 15.1 103 26-136 318-420 (1265)
57 KOG1962 B-cell receptor-associ 73.7 52 0.0011 31.1 11.1 18 105-122 182-199 (216)
58 PF15456 Uds1: Up-regulated Du 73.2 60 0.0013 27.9 11.0 49 21-70 11-59 (124)
59 KOG1029 Endocytic adaptor prot 72.6 1.6E+02 0.0034 33.2 15.6 34 73-106 468-501 (1118)
60 TIGR03545 conserved hypothetic 71.5 35 0.00075 36.5 10.6 45 80-124 215-259 (555)
61 KOG1853 LIS1-interacting prote 71.3 1.1E+02 0.0023 29.9 14.2 100 30-129 17-125 (333)
62 PRK02224 chromosome segregatio 71.1 1.8E+02 0.0038 32.4 19.1 6 271-276 815-820 (880)
63 PF08317 Spc7: Spc7 kinetochor 71.0 1.1E+02 0.0024 30.1 15.2 6 210-215 294-299 (325)
64 TIGR01005 eps_transp_fam exopo 71.0 1.7E+02 0.0036 32.1 20.0 16 319-334 563-578 (754)
65 TIGR03495 phage_LysB phage lys 70.8 73 0.0016 27.9 10.8 11 108-118 81-91 (135)
66 PF00038 Filament: Intermediat 70.8 1E+02 0.0022 29.6 17.0 32 39-70 11-42 (312)
67 KOG3850 Predicted membrane pro 70.1 1.1E+02 0.0023 31.6 12.9 15 236-250 423-437 (455)
68 PF09304 Cortex-I_coil: Cortex 70.1 66 0.0014 27.1 14.5 23 39-61 16-38 (107)
69 smart00787 Spc7 Spc7 kinetocho 69.5 1.2E+02 0.0027 30.0 17.9 15 50-64 176-190 (312)
70 PF05667 DUF812: Protein of un 69.0 1.5E+02 0.0032 32.1 14.8 15 129-143 418-432 (594)
71 PF03670 UPF0184: Uncharacteri 69.0 36 0.00077 27.5 7.7 46 25-70 19-64 (83)
72 PF11932 DUF3450: Protein of u 68.8 1.1E+02 0.0023 29.0 13.8 61 75-135 43-103 (251)
73 COG3206 GumC Uncharacterized p 68.6 1.5E+02 0.0032 30.5 16.6 36 107-142 347-382 (458)
74 PF12761 End3: Actin cytoskele 68.6 49 0.0011 30.8 9.6 51 18-68 83-143 (195)
75 PRK11281 hypothetical protein; 68.4 1.3E+02 0.0028 35.1 14.9 11 31-41 62-72 (1113)
76 KOG4673 Transcription factor T 68.3 1.8E+02 0.0039 32.3 14.8 45 81-125 577-621 (961)
77 PF07851 TMPIT: TMPIT-like pro 68.1 42 0.0009 33.7 9.7 28 241-268 216-243 (330)
78 COG1382 GimC Prefoldin, chaper 67.9 79 0.0017 27.2 13.0 90 32-129 6-97 (119)
79 PRK04863 mukB cell division pr 67.8 2.8E+02 0.006 33.5 17.7 107 18-125 492-602 (1486)
80 PF13805 Pil1: Eisosome compon 67.8 1.3E+02 0.0027 29.5 13.1 53 30-86 122-174 (271)
81 TIGR00606 rad50 rad50. This fa 67.1 2.6E+02 0.0057 32.9 20.0 29 153-181 357-385 (1311)
82 KOG0976 Rho/Rac1-interacting s 66.8 2.3E+02 0.005 32.1 16.5 23 40-62 345-367 (1265)
83 KOG2077 JNK/SAPK-associated pr 66.8 80 0.0017 34.1 11.8 67 57-123 298-364 (832)
84 KOG3091 Nuclear pore complex, 66.7 1.8E+02 0.0039 30.8 15.6 14 25-38 330-343 (508)
85 KOG0249 LAR-interacting protei 66.7 2.1E+02 0.0046 31.8 15.1 43 44-87 103-145 (916)
86 KOG0161 Myosin class II heavy 66.2 3.2E+02 0.007 33.8 17.9 19 154-172 1119-1137(1930)
87 PF08614 ATG16: Autophagy prot 65.8 84 0.0018 28.6 10.7 25 112-136 147-171 (194)
88 KOG0995 Centromere-associated 65.2 2E+02 0.0044 30.9 16.6 36 30-65 218-254 (581)
89 PRK10869 recombination and rep 65.2 1.9E+02 0.0042 30.8 14.7 63 31-94 163-225 (553)
90 PF09730 BicD: Microtubule-ass 64.1 2.4E+02 0.0052 31.4 17.9 17 130-146 153-169 (717)
91 PRK09343 prefoldin subunit bet 63.9 91 0.002 26.4 11.9 44 43-86 4-47 (121)
92 COG0419 SbcC ATPase involved i 62.7 2.7E+02 0.0058 31.5 19.5 10 212-221 462-471 (908)
93 PF14817 HAUS5: HAUS augmin-li 62.6 2.4E+02 0.0052 30.9 17.4 24 153-176 447-470 (632)
94 PF06632 XRCC4: DNA double-str 61.9 1.4E+02 0.003 30.1 12.2 44 36-79 134-177 (342)
95 TIGR00634 recN DNA repair prot 61.3 1.8E+02 0.0039 30.9 13.6 19 151-169 362-380 (563)
96 TIGR03752 conj_TIGR03752 integ 60.9 1.1E+02 0.0024 32.2 11.5 21 49-69 62-82 (472)
97 PF04156 IncA: IncA protein; 60.7 1.2E+02 0.0027 27.0 16.1 18 46-63 88-105 (191)
98 PF05701 WEMBL: Weak chloropla 60.4 2.3E+02 0.005 30.0 16.1 88 31-118 227-329 (522)
99 PLN03188 kinesin-12 family pro 60.3 3.5E+02 0.0076 32.0 18.4 45 100-144 1171-1215(1320)
100 PRK12704 phosphodiesterase; Pr 60.2 2.4E+02 0.0051 30.0 16.8 20 151-170 160-179 (520)
101 TIGR02338 gimC_beta prefoldin, 60.2 98 0.0021 25.6 13.1 37 33-69 4-40 (110)
102 PRK10884 SH3 domain-containing 59.9 1.5E+02 0.0032 27.6 11.9 23 44-66 91-113 (206)
103 PF10498 IFT57: Intra-flagella 59.7 2E+02 0.0044 29.1 17.4 16 150-165 329-344 (359)
104 KOG3915 Transcription regulato 59.5 1.4E+02 0.003 31.5 11.7 55 50-110 496-550 (641)
105 PRK08475 F0F1 ATP synthase sub 59.4 1.3E+02 0.0028 26.8 14.6 16 156-171 133-148 (167)
106 PF10191 COG7: Golgi complex c 59.4 2.9E+02 0.0063 30.8 15.6 16 128-143 146-161 (766)
107 TIGR00606 rad50 rad50. This fa 59.1 3.6E+02 0.0079 31.8 18.6 36 30-65 823-862 (1311)
108 COG1463 Ttg2C ABC-type transpo 59.0 2E+02 0.0043 28.7 16.2 51 24-74 134-190 (359)
109 KOG0977 Nuclear envelope prote 58.1 2.7E+02 0.0058 30.0 15.3 28 42-69 95-122 (546)
110 PRK10884 SH3 domain-containing 57.9 1.6E+02 0.0035 27.4 11.7 24 39-62 93-116 (206)
111 PRK10929 putative mechanosensi 57.5 2.2E+02 0.0047 33.3 14.1 27 38-64 64-90 (1109)
112 PF04111 APG6: Autophagy prote 57.2 2E+02 0.0044 28.4 13.0 65 236-329 241-307 (314)
113 KOG0161 Myosin class II heavy 57.0 4.7E+02 0.01 32.5 18.9 12 158-169 1154-1165(1930)
114 PTZ00491 major vault protein; 56.5 2.2E+02 0.0048 32.1 13.5 15 232-246 832-846 (850)
115 PHA03247 large tegument protei 55.9 3.4E+02 0.0074 34.8 15.5 137 34-172 912-1081(3151)
116 COG4026 Uncharacterized protei 55.8 1.7E+02 0.0036 28.1 10.7 32 106-137 153-184 (290)
117 PF14712 Snapin_Pallidin: Snap 55.6 1E+02 0.0022 24.3 10.0 29 42-70 17-45 (92)
118 KOG4643 Uncharacterized coiled 55.2 3.9E+02 0.0085 31.0 18.9 34 310-343 815-848 (1195)
119 PRK09039 hypothetical protein; 54.0 2.4E+02 0.0052 28.2 18.8 20 151-170 174-193 (343)
120 PF05529 Bap31: B-cell recepto 53.9 1.2E+02 0.0025 27.5 9.4 29 38-66 117-145 (192)
121 KOG4182 Uncharacterized conser 53.2 2.9E+02 0.0063 29.5 12.9 72 107-178 176-247 (828)
122 KOG0804 Cytoplasmic Zn-finger 52.9 3E+02 0.0065 29.0 14.8 7 152-158 438-444 (493)
123 PF09731 Mitofilin: Mitochondr 52.9 3.1E+02 0.0066 29.1 17.6 17 242-258 494-510 (582)
124 PRK03918 chromosome segregatio 52.6 3.6E+02 0.0079 29.8 19.6 9 29-37 155-163 (880)
125 PF15290 Syntaphilin: Golgi-lo 52.4 2.4E+02 0.0051 27.9 11.5 70 48-122 63-137 (305)
126 PHA02562 46 endonuclease subun 52.1 3E+02 0.0064 28.7 18.7 6 271-276 500-505 (562)
127 TIGR02680 conserved hypothetic 51.8 4.9E+02 0.011 31.1 19.5 8 255-262 1218-1225(1353)
128 PF13514 AAA_27: AAA domain 51.8 4E+02 0.0088 30.8 15.3 41 30-70 734-774 (1111)
129 KOG0804 Cytoplasmic Zn-finger 51.2 3.2E+02 0.0069 28.8 12.9 13 55-67 349-361 (493)
130 CHL00118 atpG ATP synthase CF0 50.3 1.7E+02 0.0038 25.5 14.7 12 60-71 45-56 (156)
131 COG1842 PspA Phage shock prote 50.1 2.3E+02 0.005 26.8 17.2 29 41-69 40-68 (225)
132 KOG0239 Kinesin (KAR3 subfamil 50.0 3.9E+02 0.0084 29.5 14.0 16 315-330 447-462 (670)
133 PF00261 Tropomyosin: Tropomyo 50.0 2.2E+02 0.0048 26.6 16.3 24 40-63 93-116 (237)
134 PF03962 Mnd1: Mnd1 family; I 49.8 2.1E+02 0.0045 26.2 11.3 31 39-69 69-99 (188)
135 KOG0972 Huntingtin interacting 49.6 2.8E+02 0.0061 27.7 12.9 74 41-118 250-324 (384)
136 PF09738 DUF2051: Double stran 49.5 2.7E+02 0.0059 27.5 13.5 16 44-59 89-104 (302)
137 COG1196 Smc Chromosome segrega 49.4 4.9E+02 0.011 30.4 19.3 12 266-277 1087-1098(1163)
138 KOG0977 Nuclear envelope prote 49.3 3.7E+02 0.008 29.0 16.2 16 50-65 110-125 (546)
139 PRK09174 F0F1 ATP synthase sub 49.2 2.2E+02 0.0048 26.4 14.8 14 59-72 75-88 (204)
140 TIGR01843 type_I_hlyD type I s 49.0 2.8E+02 0.006 27.4 16.5 20 44-63 142-161 (423)
141 PF10475 DUF2450: Protein of u 48.6 2.6E+02 0.0056 27.0 17.0 54 53-106 42-96 (291)
142 PF13851 GAS: Growth-arrest sp 47.6 2.3E+02 0.005 26.1 13.3 8 30-37 13-20 (201)
143 KOG0249 LAR-interacting protei 47.6 4.5E+02 0.0097 29.5 13.7 81 34-115 107-187 (916)
144 PF12777 MT: Microtubule-bindi 46.5 1E+02 0.0023 30.6 8.5 42 128-169 272-314 (344)
145 PF14362 DUF4407: Domain of un 46.3 2.8E+02 0.0061 26.7 12.5 22 46-67 142-163 (301)
146 TIGR02231 conserved hypothetic 46.2 2.9E+02 0.0062 29.0 12.1 18 45-62 84-101 (525)
147 PLN03086 PRLI-interacting fact 45.5 1.4E+02 0.0031 32.1 9.7 40 99-138 29-69 (567)
148 COG1340 Uncharacterized archae 45.3 3.2E+02 0.0069 27.1 14.0 33 40-72 14-46 (294)
149 TIGR03319 YmdA_YtgF conserved 45.2 4E+02 0.0087 28.2 17.5 20 151-170 154-173 (514)
150 PF06103 DUF948: Bacterial pro 44.5 1.5E+02 0.0033 23.2 9.8 34 39-72 19-52 (90)
151 PF03310 Cauli_DNA-bind: Cauli 44.3 1.9E+02 0.0041 25.0 8.4 28 43-70 3-30 (121)
152 KOG3091 Nuclear pore complex, 44.3 2.5E+02 0.0055 29.7 11.0 7 26-32 310-316 (508)
153 TIGR03752 conj_TIGR03752 integ 43.9 2.9E+02 0.0062 29.2 11.3 28 42-69 62-89 (472)
154 KOG0971 Microtubule-associated 43.8 5E+02 0.011 30.0 13.5 97 46-145 945-1041(1243)
155 TIGR02231 conserved hypothetic 43.8 4E+02 0.0087 27.9 12.8 29 40-68 72-100 (525)
156 PF15556 Zwint: ZW10 interacto 43.8 2.9E+02 0.0062 26.2 13.4 11 58-68 71-81 (252)
157 COG4942 Membrane-bound metallo 43.2 4E+02 0.0088 27.7 19.1 29 40-68 46-74 (420)
158 PF05266 DUF724: Protein of un 43.0 2.7E+02 0.0059 25.6 13.4 45 43-87 73-120 (190)
159 KOG0163 Myosin class VI heavy 42.8 5.5E+02 0.012 29.1 14.1 21 48-68 884-904 (1259)
160 PF10146 zf-C4H2: Zinc finger- 42.5 3.1E+02 0.0066 26.1 12.9 13 57-69 36-48 (230)
161 PRK04778 septation ring format 42.5 4.5E+02 0.0098 28.0 15.5 9 166-174 221-229 (569)
162 PF14257 DUF4349: Domain of un 42.2 1.7E+02 0.0037 27.7 8.9 8 34-41 107-114 (262)
163 PF06160 EzrA: Septation ring 41.9 4.6E+02 0.01 28.0 17.0 24 45-68 107-130 (560)
164 smart00502 BBC B-Box C-termina 41.8 1.8E+02 0.0039 23.3 13.1 18 46-63 7-24 (127)
165 PF04344 CheZ: Chemotaxis phos 41.1 3E+02 0.0066 25.6 12.2 47 76-122 33-79 (214)
166 PF10267 Tmemb_cc2: Predicted 40.7 4.3E+02 0.0093 27.3 18.6 46 42-87 247-293 (395)
167 PRK03947 prefoldin subunit alp 40.6 2.3E+02 0.005 24.1 13.2 21 102-122 94-114 (140)
168 KOG4460 Nuclear pore complex, 40.5 5.1E+02 0.011 28.1 14.6 22 151-172 714-735 (741)
169 KOG0979 Structural maintenance 40.3 6.5E+02 0.014 29.2 15.8 149 17-172 167-348 (1072)
170 PF06248 Zw10: Centromere/kine 39.9 4.9E+02 0.011 27.7 17.5 19 237-255 278-296 (593)
171 TIGR02449 conserved hypothetic 39.7 1.7E+02 0.0038 22.4 9.1 12 57-68 4-15 (65)
172 COG4985 ABC-type phosphate tra 39.6 3.6E+02 0.0078 26.1 11.4 15 151-165 230-244 (289)
173 COG0497 RecN ATPase involved i 39.4 5.2E+02 0.011 27.9 15.3 37 22-58 198-234 (557)
174 PRK07521 flgK flagellar hook-a 39.3 4.7E+02 0.01 27.3 12.7 26 155-180 187-212 (483)
175 PF05400 FliT: Flagellar prote 39.2 1.6E+02 0.0036 22.0 8.6 35 92-126 45-79 (84)
176 KOG0612 Rho-associated, coiled 39.1 7.3E+02 0.016 29.5 15.9 13 158-170 652-664 (1317)
177 TIGR03017 EpsF chain length de 39.0 4.2E+02 0.0092 26.7 12.7 23 39-61 215-237 (444)
178 PRK10476 multidrug resistance 38.9 3.8E+02 0.0083 26.2 14.8 11 265-275 277-287 (346)
179 cd00632 Prefoldin_beta Prefold 38.9 2.1E+02 0.0046 23.2 12.6 26 101-126 62-87 (105)
180 PF05667 DUF812: Protein of un 38.9 5.4E+02 0.012 27.9 17.5 20 48-67 344-363 (594)
181 PHA02047 phage lambda Rz1-like 38.8 1.6E+02 0.0034 24.6 6.8 31 84-114 41-71 (101)
182 PRK11546 zraP zinc resistance 38.5 99 0.0021 27.4 6.1 32 88-119 51-82 (143)
183 PF15254 CCDC14: Coiled-coil d 38.2 6.3E+02 0.014 28.5 15.9 27 43-69 438-464 (861)
184 KOG3032 Uncharacterized conser 37.7 1.9E+02 0.0041 27.8 8.2 33 30-62 168-200 (264)
185 TIGR00237 xseA exodeoxyribonuc 37.6 4.8E+02 0.01 26.9 16.1 24 29-52 252-275 (432)
186 TIGR00996 Mtu_fam_mce virulenc 36.9 3.7E+02 0.0081 25.5 14.6 56 80-135 177-232 (291)
187 PF14662 CCDC155: Coiled-coil 36.7 3.5E+02 0.0077 25.2 17.3 55 38-95 7-61 (193)
188 PF12128 DUF3584: Protein of u 36.5 7.7E+02 0.017 29.0 18.8 11 78-88 353-363 (1201)
189 TIGR01005 eps_transp_fam exopo 36.5 5E+02 0.011 28.5 12.6 92 46-140 288-383 (754)
190 COG1256 FlgK Flagellar hook-as 36.4 2E+02 0.0042 31.0 9.1 79 38-123 137-215 (552)
191 PF06156 DUF972: Protein of un 36.0 2.4E+02 0.0051 23.6 7.7 33 38-70 7-39 (107)
192 KOG2180 Late Golgi protein sor 35.7 6.7E+02 0.015 28.0 14.2 90 39-132 33-123 (793)
193 PRK00286 xseA exodeoxyribonucl 35.6 5E+02 0.011 26.5 15.9 24 29-52 257-280 (438)
194 COG4372 Uncharacterized protei 35.5 5.3E+02 0.011 26.8 17.4 17 50-66 155-171 (499)
195 PRK08147 flgK flagellar hook-a 35.2 5.7E+02 0.012 27.1 14.4 25 156-180 196-220 (547)
196 PF11180 DUF2968: Protein of u 35.2 3.7E+02 0.0081 25.0 13.6 18 45-62 97-114 (192)
197 PRK05431 seryl-tRNA synthetase 35.1 2.7E+02 0.0059 28.6 9.7 20 314-333 296-315 (425)
198 TIGR03017 EpsF chain length de 35.0 4.9E+02 0.011 26.3 20.6 44 47-93 255-298 (444)
199 PRK14161 heat shock protein Gr 35.0 3.5E+02 0.0077 24.6 10.4 24 154-178 100-123 (178)
200 PF05010 TACC: Transforming ac 34.9 3.9E+02 0.0084 25.0 16.8 24 48-71 57-80 (207)
201 PHA03332 membrane glycoprotein 34.6 8.2E+02 0.018 28.7 14.9 22 148-169 985-1006(1328)
202 PF07795 DUF1635: Protein of u 34.6 2.7E+02 0.0058 26.3 8.6 43 79-124 3-45 (214)
203 KOG0964 Structural maintenance 34.6 8E+02 0.017 28.6 14.9 25 311-335 609-642 (1200)
204 PF06785 UPF0242: Uncharacteri 34.3 5.2E+02 0.011 26.3 14.9 14 164-177 212-225 (401)
205 PRK14474 F0F1 ATP synthase sub 34.2 4.2E+02 0.0091 25.2 14.9 6 212-217 218-223 (250)
206 PRK10698 phage shock protein P 34.2 4E+02 0.0086 25.0 15.2 36 31-69 33-68 (222)
207 COG1566 EmrA Multidrug resista 34.0 5.1E+02 0.011 26.2 14.8 35 29-66 84-118 (352)
208 PRK06665 flgK flagellar hook-a 33.9 6.5E+02 0.014 27.3 14.1 26 155-180 204-229 (627)
209 COG1256 FlgK Flagellar hook-as 33.7 6.3E+02 0.014 27.2 13.0 25 156-180 197-221 (552)
210 PRK06975 bifunctional uroporph 33.7 6.3E+02 0.014 27.6 12.6 80 100-179 390-483 (656)
211 PF10828 DUF2570: Protein of u 33.6 2.8E+02 0.006 23.0 10.7 23 41-63 20-42 (110)
212 COG1382 GimC Prefoldin, chaper 33.3 3.1E+02 0.0068 23.5 10.9 23 47-69 7-29 (119)
213 KOG2896 UV radiation resistanc 32.8 5.6E+02 0.012 26.3 18.8 82 239-327 237-322 (377)
214 PF06008 Laminin_I: Laminin Do 32.8 4.3E+02 0.0094 25.0 12.8 8 136-143 130-137 (264)
215 KOG0163 Myosin class VI heavy 32.5 7.9E+02 0.017 28.0 15.3 10 208-217 1063-1072(1259)
216 KOG0933 Structural maintenance 32.5 8.6E+02 0.019 28.4 18.3 23 15-37 660-682 (1174)
217 TIGR00414 serS seryl-tRNA synt 32.4 4.6E+02 0.0099 26.9 10.8 18 316-333 300-317 (418)
218 KOG4643 Uncharacterized coiled 31.9 7.5E+02 0.016 28.8 12.7 25 45-69 204-228 (1195)
219 PRK11578 macrolide transporter 31.7 5.2E+02 0.011 25.5 11.4 8 132-139 171-178 (370)
220 KOG4674 Uncharacterized conser 31.7 1.1E+03 0.024 29.3 14.9 62 57-118 1289-1355(1822)
221 COG4026 Uncharacterized protei 31.6 4.8E+02 0.01 25.1 12.1 20 50-69 132-151 (290)
222 PRK04863 mukB cell division pr 31.5 1E+03 0.022 28.9 19.5 23 236-258 701-732 (1486)
223 PRK11281 hypothetical protein; 31.5 9.2E+02 0.02 28.4 16.0 24 32-58 124-147 (1113)
224 PRK13729 conjugal transfer pil 31.3 1.8E+02 0.0038 30.8 7.5 20 46-65 69-88 (475)
225 PF10234 Cluap1: Clusterin-ass 31.1 5.1E+02 0.011 25.3 14.2 41 78-118 159-199 (267)
226 TIGR03545 conserved hypothetic 31.0 5.5E+02 0.012 27.6 11.4 18 74-91 188-205 (555)
227 PRK09841 cryptic autophosphory 30.9 4.7E+02 0.01 28.7 11.2 103 40-143 275-387 (726)
228 COG3264 Small-conductance mech 30.7 8.4E+02 0.018 27.7 14.4 22 47-68 59-80 (835)
229 PF11887 DUF3407: Protein of u 30.6 4.3E+02 0.0094 25.3 9.7 73 101-178 62-134 (267)
230 PRK02119 hypothetical protein; 30.5 2.6E+02 0.0056 21.7 7.3 6 82-87 14-19 (73)
231 TIGR00414 serS seryl-tRNA synt 30.4 4.6E+02 0.0099 26.9 10.4 26 40-65 31-56 (418)
232 TIGR03007 pepcterm_ChnLen poly 30.0 5.4E+02 0.012 26.5 11.0 112 32-143 261-372 (498)
233 COG2433 Uncharacterized conser 29.7 7.8E+02 0.017 27.0 13.4 15 42-56 388-402 (652)
234 PRK13729 conjugal transfer pil 29.5 2.1E+02 0.0045 30.2 7.7 11 109-119 97-107 (475)
235 PRK01156 chromosome segregatio 29.4 8.4E+02 0.018 27.3 16.1 112 32-143 622-736 (895)
236 PLN03223 Polycystin cation cha 29.3 3.6E+02 0.0079 32.4 10.0 17 53-69 837-853 (1634)
237 PF10475 DUF2450: Protein of u 29.3 5.3E+02 0.011 24.9 14.0 37 130-166 145-181 (291)
238 PRK05431 seryl-tRNA synthetase 29.2 4.8E+02 0.01 26.8 10.3 28 40-67 29-56 (425)
239 PF04012 PspA_IM30: PspA/IM30 29.2 4.5E+02 0.0097 24.0 16.9 26 43-68 41-66 (221)
240 KOG4673 Transcription factor T 29.1 8.6E+02 0.019 27.3 16.7 35 38-72 408-442 (961)
241 PF02403 Seryl_tRNA_N: Seryl-t 28.9 3.1E+02 0.0067 22.1 8.1 9 111-119 52-60 (108)
242 PF11559 ADIP: Afadin- and alp 28.9 3.8E+02 0.0082 23.1 17.0 32 33-64 32-63 (151)
243 PF15066 CAGE1: Cancer-associa 28.9 7.2E+02 0.016 26.4 11.2 82 55-143 364-446 (527)
244 PF10168 Nup88: Nuclear pore c 28.9 8.4E+02 0.018 27.1 19.4 20 104-123 602-621 (717)
245 COG4372 Uncharacterized protei 28.8 6.8E+02 0.015 26.0 18.8 13 27-39 72-84 (499)
246 PRK12715 flgK flagellar hook-a 28.7 8.1E+02 0.018 26.8 13.8 23 157-179 190-212 (649)
247 COG4575 ElaB Uncharacterized c 28.6 3.6E+02 0.0077 22.7 9.5 22 48-69 10-31 (104)
248 PRK07352 F0F1 ATP synthase sub 28.3 4.2E+02 0.0091 23.4 17.5 17 20-36 8-24 (174)
249 KOG1962 B-cell receptor-associ 28.2 5.2E+02 0.011 24.5 12.0 16 105-120 158-173 (216)
250 PF06120 Phage_HK97_TLTM: Tail 28.1 6.1E+02 0.013 25.2 16.1 62 46-107 41-104 (301)
251 TIGR02449 conserved hypothetic 28.0 2.8E+02 0.0061 21.3 8.9 24 46-69 14-37 (65)
252 PLN02320 seryl-tRNA synthetase 27.9 4.1E+02 0.0088 28.3 9.6 23 311-333 356-378 (502)
253 PF09304 Cortex-I_coil: Cortex 27.9 3.7E+02 0.0081 22.7 11.2 19 104-122 53-71 (107)
254 PF13851 GAS: Growth-arrest sp 27.8 4.9E+02 0.011 24.0 18.3 22 45-66 61-82 (201)
255 PRK07353 F0F1 ATP synthase sub 27.3 3.8E+02 0.0082 22.6 14.8 8 62-69 30-37 (140)
256 PRK11519 tyrosine kinase; Prov 26.9 7.5E+02 0.016 27.2 11.9 103 40-143 275-387 (719)
257 PRK00106 hypothetical protein; 26.9 8.1E+02 0.018 26.3 18.0 19 151-169 175-193 (535)
258 KOG2185 Predicted RNA-processi 26.9 4.2E+02 0.0091 27.6 9.1 20 80-99 447-466 (486)
259 PRK09174 F0F1 ATP synthase sub 26.9 5.1E+02 0.011 23.9 12.9 17 54-70 85-101 (204)
260 PRK13169 DNA replication intia 26.8 2.8E+02 0.006 23.4 6.7 32 39-70 8-39 (110)
261 KOG1760 Molecular chaperone Pr 26.8 4.3E+02 0.0093 23.0 12.6 42 26-68 11-52 (131)
262 KOG0933 Structural maintenance 26.5 1.1E+03 0.024 27.6 16.9 33 38-70 257-289 (1174)
263 PF04102 SlyX: SlyX; InterPro 26.2 2.9E+02 0.0064 20.9 7.1 17 109-125 32-48 (69)
264 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.0 4.1E+02 0.0089 22.6 16.5 28 41-68 5-32 (132)
265 PRK00888 ftsB cell division pr 25.9 2.2E+02 0.0047 23.6 5.9 18 105-122 44-61 (105)
266 PLN02678 seryl-tRNA synthetase 25.7 6.5E+02 0.014 26.3 10.6 7 257-263 319-325 (448)
267 PF05335 DUF745: Protein of un 25.6 5.3E+02 0.012 23.7 16.6 37 126-164 130-166 (188)
268 PF00038 Filament: Intermediat 25.5 6E+02 0.013 24.3 18.4 16 44-59 167-182 (312)
269 PF05266 DUF724: Protein of un 25.4 5.3E+02 0.012 23.7 12.1 7 25-31 27-33 (190)
270 PF13779 DUF4175: Domain of un 25.2 1E+03 0.022 26.9 14.6 104 32-143 446-571 (820)
271 KOG2391 Vacuolar sorting prote 25.1 7.4E+02 0.016 25.2 11.5 13 75-87 247-259 (365)
272 KOG2391 Vacuolar sorting prote 25.0 7.4E+02 0.016 25.2 10.4 14 105-118 263-276 (365)
273 PF14852 Fis1_TPR_N: Fis1 N-te 25.0 56 0.0012 21.9 1.8 12 309-320 2-13 (35)
274 PF06005 DUF904: Protein of un 24.9 3.3E+02 0.0072 21.1 10.9 13 56-68 7-19 (72)
275 KOG2264 Exostosin EXT1L [Signa 24.8 5.5E+02 0.012 28.1 9.7 19 47-65 94-112 (907)
276 COG2433 Uncharacterized conser 24.8 9.5E+02 0.021 26.4 14.3 17 160-176 527-543 (652)
277 KOG2891 Surface glycoprotein [ 24.7 7E+02 0.015 24.8 15.7 37 48-86 318-354 (445)
278 COG3074 Uncharacterized protei 24.7 3.5E+02 0.0076 21.3 10.4 73 52-124 3-75 (79)
279 KOG0612 Rho-associated, coiled 24.6 1.2E+03 0.027 27.7 17.0 13 336-348 911-923 (1317)
280 PF08826 DMPK_coil: DMPK coile 24.3 3.2E+02 0.0069 20.7 9.1 20 44-63 2-21 (61)
281 PF07795 DUF1635: Protein of u 24.3 5.2E+02 0.011 24.4 8.6 25 98-122 36-60 (214)
282 KOG1899 LAR transmembrane tyro 24.0 1E+03 0.022 26.4 14.1 21 29-49 104-124 (861)
283 PRK00286 xseA exodeoxyribonucl 23.9 7.8E+02 0.017 25.1 14.9 12 166-177 385-396 (438)
284 PF06419 COG6: Conserved oligo 23.9 5.3E+02 0.012 27.9 9.9 63 33-95 39-101 (618)
285 KOG2685 Cystoskeletal protein 23.8 8.4E+02 0.018 25.4 11.3 22 72-93 276-297 (421)
286 PF07352 Phage_Mu_Gam: Bacteri 23.7 4.8E+02 0.01 22.6 8.6 19 30-48 1-19 (149)
287 PF06148 COG2: COG (conserved 23.7 1E+02 0.0022 26.2 3.6 81 38-118 22-103 (133)
288 PF12761 End3: Actin cytoskele 23.5 6.1E+02 0.013 23.6 9.2 10 128-137 162-171 (195)
289 PF09325 Vps5: Vps5 C terminal 23.1 5.7E+02 0.012 23.2 17.2 18 34-51 80-97 (236)
290 PF12718 Tropomyosin_1: Tropom 23.1 5.1E+02 0.011 22.6 17.5 59 34-95 9-67 (143)
291 PF12777 MT: Microtubule-bindi 23.0 7.5E+02 0.016 24.5 13.3 31 226-257 182-212 (344)
292 PF12325 TMF_TATA_bd: TATA ele 23.0 4.8E+02 0.01 22.3 14.3 58 13-72 2-63 (120)
293 PF12999 PRKCSH-like: Glucosid 22.9 4.5E+02 0.0097 24.1 7.7 13 105-117 156-168 (176)
294 PF10234 Cluap1: Clusterin-ass 22.9 7.2E+02 0.016 24.3 14.4 94 31-124 119-216 (267)
295 PF05276 SH3BP5: SH3 domain-bi 22.9 6.8E+02 0.015 24.0 11.4 15 33-47 122-136 (239)
296 PRK13454 F0F1 ATP synthase sub 22.8 5.6E+02 0.012 23.0 15.1 14 59-72 53-66 (181)
297 PRK07191 flgK flagellar hook-a 22.7 8.6E+02 0.019 25.1 15.0 25 156-180 193-217 (456)
298 PF05600 DUF773: Protein of un 22.6 9.4E+02 0.02 25.5 12.0 88 40-137 401-488 (507)
299 PRK06443 chorismate mutase; Va 22.5 5.4E+02 0.012 23.7 8.1 39 26-67 2-40 (177)
300 PHA01750 hypothetical protein 22.5 1.3E+02 0.0029 23.3 3.6 14 48-61 51-64 (75)
301 PF05010 TACC: Transforming ac 22.5 6.4E+02 0.014 23.6 16.7 80 32-114 76-155 (207)
302 TIGR02492 flgK_ends flagellar 22.4 6.3E+02 0.014 24.8 9.4 82 35-122 130-211 (322)
303 PRK10929 putative mechanosensi 22.4 1.3E+03 0.028 27.1 14.1 13 27-39 100-112 (1109)
304 PF02388 FemAB: FemAB family; 22.2 4.3E+02 0.0093 26.9 8.4 20 48-67 244-263 (406)
305 KOG4571 Activating transcripti 22.2 6.7E+02 0.015 24.8 9.2 39 90-128 236-274 (294)
306 PRK06945 flgK flagellar hook-a 22.2 1.1E+03 0.023 25.9 14.8 25 156-180 195-219 (651)
307 PRK04778 septation ring format 22.1 9.7E+02 0.021 25.5 16.3 17 128-144 450-466 (569)
308 PF11887 DUF3407: Protein of u 22.0 7.1E+02 0.015 23.9 13.6 33 92-124 74-106 (267)
309 COG0172 SerS Seryl-tRNA synthe 21.9 7.2E+02 0.016 26.0 9.9 16 319-334 304-319 (429)
310 KOG0982 Centrosomal protein Nu 21.8 9.5E+02 0.021 25.3 13.1 11 55-65 299-309 (502)
311 PF04880 NUDE_C: NUDE protein, 21.8 1.4E+02 0.0031 27.0 4.3 15 55-69 2-16 (166)
312 PF04849 HAP1_N: HAP1 N-termin 21.6 8.1E+02 0.018 24.4 15.0 29 40-68 161-189 (306)
313 PRK06568 F0F1 ATP synthase sub 21.6 5.8E+02 0.013 22.7 13.2 21 48-68 40-60 (154)
314 cd00890 Prefoldin Prefoldin is 21.6 4.5E+02 0.0098 21.5 11.5 18 106-123 91-108 (129)
315 PF04949 Transcrip_act: Transc 21.5 6E+02 0.013 22.8 12.3 103 52-157 48-153 (159)
316 PF02403 Seryl_tRNA_N: Seryl-t 21.4 4.4E+02 0.0095 21.2 9.7 6 62-67 28-33 (108)
317 PLN02678 seryl-tRNA synthetase 21.4 7.8E+02 0.017 25.7 10.2 17 317-333 306-322 (448)
318 PRK10361 DNA recombination pro 21.1 1E+03 0.022 25.3 18.6 124 35-165 32-156 (475)
319 TIGR02971 heterocyst_DevB ABC 20.5 7.6E+02 0.017 23.7 14.5 11 264-274 270-280 (327)
320 cd07666 BAR_SNX7 The Bin/Amphi 20.5 7.6E+02 0.016 23.6 13.3 12 112-123 180-191 (243)
321 PF08181 DegQ: DegQ (SacQ) fam 20.2 2.4E+02 0.0053 19.8 4.2 31 31-64 6-36 (46)
322 PF04849 HAP1_N: HAP1 N-termin 20.2 8.7E+02 0.019 24.2 14.6 15 27-41 158-172 (306)
323 PF15463 ECM11: Extracellular 20.2 3.2E+02 0.0069 23.6 6.1 25 101-125 111-135 (139)
No 1
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=100.00 E-value=9.2e-41 Score=318.07 Aligned_cols=261 Identities=29% Similarity=0.404 Sum_probs=197.7
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe-----~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
+|+++...|+++.+.++.|+.+|+.+|+ ..........++.+++.+++..+..++....+.+..++.+.+.++.|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 66666677888888888888888888887777777777777777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHhhhhccceeeCCCCcccccccCCCCC
Q 018759 115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN 194 (351)
Q Consensus 115 ~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL~~IyPI~~~~~~~~~~~~~~~~~~~ 194 (351)
..+...+.............+.+....+.. .+..+..++.++..+|..++.+|..||||+++..++.
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~----------- 167 (302)
T PF10186_consen 101 EQRRSRLSASQDLVESRQEQLEELQNELEE--RKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRR----------- 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeccccc-----------
Confidence 777766662222222222223333222222 2455677999999999999999999999998721100
Q ss_pred CCCCCCCCCCCCCCceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceecc
Q 018759 195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 274 (351)
Q Consensus 195 ~~g~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI~D 274 (351)
. .+..+..|+|+|++||+.. +|...+ .+.++||||||||+|.|||+||||||||||.+.||+|+|.|
T Consensus 168 -~------~~~~~~~~~I~~~~lp~~~-----~~~~~~-~~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d 234 (302)
T PF10186_consen 168 -P------SDSSSSEYTICGLPLPNSR-----DFNSLP-DEEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID 234 (302)
T ss_pred -C------CCCCCCCeeecCcccCCCc-----ccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence 0 0001469999999999963 333333 35899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 018759 275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRC 341 (351)
Q Consensus 275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~~ 341 (351)
.+. ....+..++.+.++.++++|+||||||||||+|||+++|+.+.++.+++
T Consensus 235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~~l~~~~ 286 (302)
T PF10186_consen 235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQGIDVPLLDPRD 286 (302)
T ss_pred -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCchh
Confidence 321 1223444455555778999999999999999999999999999555444
No 2
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=260.51 Aligned_cols=114 Identities=43% Similarity=0.701 Sum_probs=101.1
Q ss_pred CCceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeccCCCCCCCCCccc
Q 018759 207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLS 286 (351)
Q Consensus 207 ~~~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~ 286 (351)
...|||||++||+-. +++ .+++ ..+||||||+||||++||.||.+||||||.+.||+|||.|+++...+
T Consensus 208 ~~v~tIrGl~lp~~~----d~~-~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~----- 276 (377)
T KOG2896|consen 208 HLVFTIRGLKLPFIE----DKQ-NKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET----- 276 (377)
T ss_pred hhhhhhhcccCCchh----hhh-ccch-HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc-----
Confidence 357999999999953 222 3444 57999999999999999999999999999999999999999987532
Q ss_pred ccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 018759 287 SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVR 340 (351)
Q Consensus 287 ~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~ 340 (351)
..|+||||.+++++.+|+||+|||||||+|||+.+|++..|++.|
T Consensus 277 ---------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl~t~~ld~t 321 (377)
T KOG2896|consen 277 ---------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGLPTPDLDQT 321 (377)
T ss_pred ---------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCCCCccHHHh
Confidence 278999999999999999999999999999999999999988765
No 3
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=115.94 Aligned_cols=102 Identities=19% Similarity=0.043 Sum_probs=80.2
Q ss_pred CceEEece--ecCCCcc-c------------ccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCccee
Q 018759 208 GSLTILGL--HLTILPF-T------------KMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYI 272 (351)
Q Consensus 208 ~~~tI~Gl--~LP~~~~-~------------~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI 272 (351)
..|.|.|. .||+.+. . .++.-....+...|.+||.|++|||+|||+||+|+||..|..+
T Consensus 145 i~~~i~gp~~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~~------ 218 (359)
T KOG4398|consen 145 INFIIPGPTQSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVHLLSVILNVRLPEKLSHH------ 218 (359)
T ss_pred eeEEecCCcccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHHHHHHHhccCCchhhcch------
Confidence 58999997 8888651 1 0111111234557999999999999999999999999999887
Q ss_pred ccCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Q 018759 273 NDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTC 343 (351)
Q Consensus 273 ~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~~~~ 343 (351)
|++-.. =.+..|..+|.-||-||.+||..||+..--+.++||-
T Consensus 219 -dfC~e~---------------------------ltke~f~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl 261 (359)
T KOG4398|consen 219 -DFCIER---------------------------LTKESFNRDWSTLNDNIIYLCIFQGVSLTKLKYTHTL 261 (359)
T ss_pred -hHHHHH---------------------------hhHHHHHHHHHHHhhhHHHHHHHhccchhhccccchH
Confidence 776421 1468999999999999999999999999888888763
No 4
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=99.06 E-value=3e-08 Score=97.31 Aligned_cols=99 Identities=24% Similarity=0.287 Sum_probs=66.9
Q ss_pred ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCCCCCCCCcccc
Q 018759 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (351)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (351)
.=||.|+.|.-.+.... +-..|+||+|++|.|+..||..|++.+ .|.|.|+||.|+|.+....
T Consensus 150 fGTINGlRLGrl~~~~V-------~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~--------- 213 (314)
T PF04111_consen 150 FGTINGLRLGRLPNVPV-------EWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD--------- 213 (314)
T ss_dssp EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred eeeECCeeeccCCCCCC-------ChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence 33899999876542211 123699999999999999999999986 5999999999999988632
Q ss_pred cccccCCCCCcccCCccCCC-------chhhHHHHHHHHHHHHHHHHHhc
Q 018759 288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKGTFNLRNRI 330 (351)
Q Consensus 288 ~~~~~~~~~~r~fPLf~~~~-------~~~rF~yaV~LLNknI~qL~~~~ 330 (351)
.....||||..+. ...+|+-|+--+=.-+.|++...
T Consensus 214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV 256 (314)
T ss_dssp --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 1357899998874 23599999988888888887654
No 5
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=0.0005 Score=69.46 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=69.6
Q ss_pred EEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCC-cceeecCCcceeccCCCCCCCCCcccccc
Q 018759 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSSNI 289 (351)
Q Consensus 211 tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLp-YPi~~~gSrSyI~D~i~~~~~ss~~~~~~ 289 (351)
||.|+.|.-.+-...+ -+.|+||+|=++.+++.++.=+|+.+- |.++|+||+|||.-.--
T Consensus 285 tIN~FRLG~lp~~pVe-------w~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~------------ 345 (447)
T KOG2751|consen 285 TINNFRLGRLPSVPVE-------WDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV------------ 345 (447)
T ss_pred ccccceeccccCCCcC-------HHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc------------
Confidence 5777777554321111 135999999999999999999999764 99999999999986632
Q ss_pred cccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHH
Q 018759 290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKGTFNLRN 328 (351)
Q Consensus 290 ~~~~~~~~r~fPLf~~~~~----~~rF~yaV~LLNknI~qL~~ 328 (351)
..++++|||.-|+- .++|+-|+-.-=--+.|+..
T Consensus 346 -----~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~ 383 (447)
T KOG2751|consen 346 -----NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFAD 383 (447)
T ss_pred -----CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHH
Confidence 25789999998863 35888887665555555543
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.69 E-value=11 Score=37.18 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=56.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~~~-~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~ 120 (351)
..++..+.++......|+.++..+=+...+ ......++..++.+|......++. .++...+++.+.+++...+..
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~----~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA----KKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666665544443222 122334555555555443333332 444445555555555555555
Q ss_pred HHHHhhHHHHHHHHHHHhHHHhhcccccc--hHHHHHHHHHHHHHHHHHHhhhhccceee
Q 018759 121 LLVAGTALSVARKRLQESNRLLAGEKGYG--HLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (351)
Q Consensus 121 l~~~~~~l~~a~~~L~ea~~~L~~e~~~~--~L~~l~~~L~~rR~~lv~qL~~IyPI~~~ 178 (351)
+.... .+....+.++...+..-++.. .+..++ .-+..|..+.++..+
T Consensus 249 ~~~~k---~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk--------~~~~~Le~~~gw~~~ 297 (325)
T PF08317_consen 249 LEEQK---QELLAEIAEAEKIREECRGWTRSEVKRLK--------AKVDALEKLTGWKIV 297 (325)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHHCcEEE
Confidence 44444 333334444444443222221 122332 235566667777765
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.47 E-value=12 Score=41.04 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018759 45 SSALSQADDKKQTLQQKLQSLIQVKAESLKR 75 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~ 75 (351)
..+|++++.+.+.|+.++..+...++...+.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888887777654443
No 8
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.69 E-value=12 Score=35.39 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHh
Q 018759 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLL 142 (351)
Q Consensus 76 ~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L 142 (351)
...+...+.+++..+..++....+...+++.+..++..|.............+......+.+.+..+
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRL 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777777777778888888888877333333333344444444555444443
No 9
>PRK11637 AmiB activator; Provisional
Probab=91.36 E-value=18 Score=36.84 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759 79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (351)
Q Consensus 79 l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir 119 (351)
+.+.+.+++.....++.....+..+.+++..+++.|..+++
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555554
No 10
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.21 E-value=8.4 Score=36.50 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
.+..++........+.+|+.+-+........ +..+..+++ .++.+..+.++.....++..++|..++..+...
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e---~~~l~~e~e----~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAE---YRQLEREIE----NLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666655433332 222222222 222233334444445555555555555544444
Q ss_pred h
Q 018759 125 G 125 (351)
Q Consensus 125 ~ 125 (351)
.
T Consensus 100 ~ 100 (251)
T PF11932_consen 100 R 100 (251)
T ss_pred H
Confidence 3
No 11
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.11 E-value=10 Score=36.25 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=4.6
Q ss_pred eceecCCC
Q 018759 213 LGLHLTIL 220 (351)
Q Consensus 213 ~Gl~LP~~ 220 (351)
|++.||..
T Consensus 203 C~m~l~~~ 210 (239)
T COG1579 203 CHMKLPSQ 210 (239)
T ss_pred CeeeecHH
Confidence 55666653
No 12
>PRK10869 recombination and repair protein; Provisional
Probab=89.43 E-value=10 Score=40.32 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=13.3
Q ss_pred CCCcceeehhhhHHHHHHHhcHHHH
Q 018759 23 PENVKVIEWEDYDQELARLWSLSSA 47 (351)
Q Consensus 23 ~~~~~~~~~~~~~~~L~rL~~L~~~ 47 (351)
.-+++.-+|+++++...+|.|-..-
T Consensus 199 ~~~l~~gE~eeL~~e~~~L~n~e~i 223 (553)
T PRK10869 199 EFAPQPGEFEQIDEEYKRLANSGQL 223 (553)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3344455566666665555554443
No 13
>PRK09039 hypothetical protein; Validated
Probab=88.70 E-value=28 Score=34.85 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhhc
Q 018759 157 MLRMRQQFMISQVSFLY 173 (351)
Q Consensus 157 ~L~~rR~~lv~qL~~Iy 173 (351)
.|...|......|..+.
T Consensus 191 ~l~~~~~~~~~~l~~~~ 207 (343)
T PRK09039 191 ELNRYRSEFFGRLREIL 207 (343)
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 44555555555554443
No 14
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.66 E-value=14 Score=39.30 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKR----SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~----~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir 119 (351)
++..+++.....+....+++++...-..+... -.+++++++|+........++- .-.+++.+.+++++.++.
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg----~s~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG----ASVEEVLEYAEKIKEELD 339 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444443333222 3456667777765555444433 344666677777777776
Q ss_pred HHHHHhhHHHHHHHHHHHhH
Q 018759 120 SLLVAGTALSVARKRLQESN 139 (351)
Q Consensus 120 ~l~~~~~~l~~a~~~L~ea~ 139 (351)
.+......+.....++.++.
T Consensus 340 ~l~~~~~~le~L~~el~~l~ 359 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLE 359 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 65555544444444444433
No 15
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.00 E-value=21 Score=38.61 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=16.4
Q ss_pred HhHHHhhcccccchHHHHHHHHHHHHHHHHHHh
Q 018759 137 ESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 137 ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL 169 (351)
..+..+..|+...+-......|..+-..+|..+
T Consensus 304 ~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 304 STKAQLQKEEQSQQNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444322222335555666666777655
No 16
>PRK12704 phosphodiesterase; Provisional
Probab=87.34 E-value=43 Score=35.49 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHH
Q 018759 310 TRAAYAVFLLNK 321 (351)
Q Consensus 310 ~rF~yaV~LLNk 321 (351)
.....|..+|.+
T Consensus 381 ~H~~iGa~il~~ 392 (520)
T PRK12704 381 SHVEIGAELAKK 392 (520)
T ss_pred CHHHHHHHHHHH
Confidence 355566666654
No 17
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.54 E-value=19 Score=38.48 Aligned_cols=79 Identities=24% Similarity=0.260 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~ 122 (351)
.+.+.|.+|.........+|+.+++... + .-+++++.++|+...+....+|-... +++-...++++.++..|.
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le-~--Dp~~L~~ve~Rl~~L~~l~RKY~~~~----~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELE-F--DPNRLEEVEERLFALKSLARKYGVTI----EDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHhh
Confidence 3445566677777777777777776642 1 23568888888887777776655555 455555566666665554
Q ss_pred HHhhHH
Q 018759 123 VAGTAL 128 (351)
Q Consensus 123 ~~~~~l 128 (351)
..-..+
T Consensus 339 ~~~~~~ 344 (557)
T COG0497 339 NSEESL 344 (557)
T ss_pred hhhhHH
Confidence 444333
No 18
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=86.07 E-value=29 Score=35.32 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.8
Q ss_pred eeehhhhHHHHHHHhc
Q 018759 28 VIEWEDYDQELARLWS 43 (351)
Q Consensus 28 ~~~~~~~~~~L~rL~~ 43 (351)
-++|+++-.++.||.+
T Consensus 226 ~vsld~L~~~ltrL~~ 241 (370)
T PLN03094 226 GVSLDELVGICTRLAR 241 (370)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3889999999999876
No 19
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.85 E-value=48 Score=35.79 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=17.6
Q ss_pred hhHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLW-SLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 33 ~~~~~L~rL~-~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.+.+.+..+. +....+.+...+...++.+|+.+=+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~ 413 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKK 413 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333333 23444555555566666666554443
No 20
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.72 E-value=52 Score=34.84 Aligned_cols=10 Identities=10% Similarity=0.012 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 018759 311 RAAYAVFLLN 320 (351)
Q Consensus 311 rF~yaV~LLN 320 (351)
...+|..+|.
T Consensus 376 H~~~Ga~ll~ 385 (514)
T TIGR03319 376 HVEIGAELAK 385 (514)
T ss_pred HHHHHHHHHH
Confidence 4445555553
No 21
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.62 E-value=11 Score=38.70 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=11.6
Q ss_pred HHhHhhHHHHHHHHHHHHcCCCCC
Q 018759 237 SATALGYIAHVVSLIASYLEVPLR 260 (351)
Q Consensus 237 isaALGyvAhlV~Lls~YL~VpLp 260 (351)
|+..|..++-++.++|..+++|+|
T Consensus 344 inllL~l~~vlLv~vSt~~~~~~P 367 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANCPLP 367 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcH
Confidence 344444445555555555554443
No 22
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.14 E-value=33 Score=38.08 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=41.4
Q ss_pred HHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018759 35 DQELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (351)
Q Consensus 35 ~~~L~rL~~L~~~-iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~re 112 (351)
=-.+++...|... |..|..-......+++.+|+...+. ..++++..+.++..+..+++...+.+...++++++++
T Consensus 485 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~---~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 485 AFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSAL---EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777554 6788888888888899888875432 2234444444443334433333333333333333333
No 23
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.70 E-value=41 Score=32.73 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=56.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~ 120 (351)
+.+=++.|.++...+..++.+|+++...-.+ ..+.+.+..+++...+..+..+...++.+.+.+..|.+-|..+.|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~---~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEE---IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666555322 2234566666677777777888888888999999999999999987
Q ss_pred HHHHh
Q 018759 121 LLVAG 125 (351)
Q Consensus 121 l~~~~ 125 (351)
+-..|
T Consensus 110 mq~nG 114 (265)
T COG3883 110 MQVNG 114 (265)
T ss_pred HHHcC
Confidence 66655
No 24
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=84.23 E-value=56 Score=34.88 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhHHHhhcc--cc---cchHHHHHHHHHHHHHHHHHHhhhhc
Q 018759 127 ALSVARKRLQESNRLLAGE--KG---YGHLQKLQKMLRMRQQFMISQVSFLY 173 (351)
Q Consensus 127 ~l~~a~~~L~ea~~~L~~e--~~---~~~L~~l~~~L~~rR~~lv~qL~~Iy 173 (351)
.+-+|-..|.+++..+..- .. ..-++.+...+...|..+...|...|
T Consensus 123 ~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w 174 (593)
T PF06248_consen 123 NYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW 174 (593)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777642 11 12367888899999999999996555
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.12 E-value=21 Score=36.91 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccceeeC
Q 018759 151 LQKLQKMLRMRQQFMISQVSFLYPVKILV 179 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL~~IyPI~~~~ 179 (351)
|..++.+-+.+|.++..+|..+|--...+
T Consensus 103 l~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 103 LNALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 44455566888888999998888764443
No 26
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.78 E-value=26 Score=29.77 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=44.0
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS--MRSKVEKEDAKNQ 110 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~--~~~~~~~~~~~k~ 110 (351)
.+++.+..+-.+..-|+.....+..|+.+++..--...+ ++.+.+.-. .=+.++.+. .-...++.+++++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~E-------L~~L~~d~~-VYk~VG~vlv~qd~~e~~~~l~~r 79 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEE-------LEKLPDDTP-IYKIVGNLLVKVDKTKVEKELKER 79 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCcch-hHHHhhHHHhhccHHHHHHHHHHH
Confidence 455666666666666666666666666665554443322 111110000 001111111 1133455666677
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 018759 111 EERLSMEVRSLLVAGTALSVAR 132 (351)
Q Consensus 111 reeL~~~ir~l~~~~~~l~~a~ 132 (351)
.+-+..+|.++......+.+.-
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666655444333
No 27
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.75 E-value=84 Score=37.23 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
+++|+..|..|+..-..+..+.......+.+++.+
T Consensus 853 L~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~a 887 (1353)
T TIGR02680 853 LKRFGDHLHTLEVAVRELRHAATRAAEQRARAARA 887 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666555554455555555555555554443
No 28
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=83.71 E-value=27 Score=29.91 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=54.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~-l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir 119 (351)
=..++..|+......+.+.++|..++..+.+. +++...+.+++.-++..+..++.+....++++.++...-++++....
T Consensus 28 ~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~ 107 (132)
T PF10392_consen 28 ELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS 107 (132)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44567777788888888999999999987765 45666666666666665666666666666666666555555555444
Q ss_pred HH
Q 018759 120 SL 121 (351)
Q Consensus 120 ~l 121 (351)
.|
T Consensus 108 ~L 109 (132)
T PF10392_consen 108 QL 109 (132)
T ss_pred HH
Confidence 43
No 29
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.82 E-value=92 Score=35.79 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=64.9
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhH-
Q 018759 36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE-------------SLKRSNELEEMRERLEARRLLMEKMSMRSK- 101 (351)
Q Consensus 36 ~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~-------------~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~- 101 (351)
+.||+ +.+|+|.-.+.++|.+.+.+.=+.+-. .......+++++.+++..+..+.......-
T Consensus 398 Qkl~K----~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~ 473 (1041)
T KOG0243|consen 398 QKLMK----KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN 473 (1041)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566 677888888888888888765433221 112223345555555555444433322222
Q ss_pred --HHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHhHHHhh-cccccchHHHHHHHHHHHHHHHHHHhhhhc
Q 018759 102 --VEKEDAKNQEERLS----MEVRSLLVAGTALSVARKRLQESNRLLA-GEKGYGHLQKLQKMLRMRQQFMISQVSFLY 173 (351)
Q Consensus 102 --~~~~~~~k~reeL~----~~ir~l~~~~~~l~~a~~~L~ea~~~L~-~e~~~~~L~~l~~~L~~rR~~lv~qL~~Iy 173 (351)
...+.+.++.+.++ .+...+....+.+..+...|.+...... .+.....+.+....+++.-..+..+++.+|
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334444444 4444555555555555555544322222 111112233334445555555556666665
No 30
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.96 E-value=28 Score=33.82 Aligned_cols=80 Identities=9% Similarity=0.178 Sum_probs=52.8
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~ree 113 (351)
+.+.=..|.++....+++..+.+.|..+|+++.....+ ...++++....+...+..++.....++...+-+.+|-..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~---~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDE---LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677888889999999999999999888876543 234455555555555555555555555555555555554
Q ss_pred HHH
Q 018759 114 LSM 116 (351)
Q Consensus 114 L~~ 116 (351)
++.
T Consensus 110 mq~ 112 (265)
T COG3883 110 MQV 112 (265)
T ss_pred HHH
Confidence 443
No 31
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=81.89 E-value=62 Score=32.89 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=71.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK-RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~-~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i 118 (351)
.|.+|+.-|.........|..+|...++.....-. ....+++++..+...-..+..+. ...++.+.-..+++..|
T Consensus 19 SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik----~kA~~sE~~V~~it~dI 94 (383)
T PF04100_consen 19 SLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIK----SKAEESEQMVQEITRDI 94 (383)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987653221 12344555444444334443322 22233333344455555
Q ss_pred HHHHHHhhHHH-----------------------------HHHHHHHHhHHHhhc---ccccchHHHHHHHHHHHHHHHH
Q 018759 119 RSLLVAGTALS-----------------------------VARKRLQESNRLLAG---EKGYGHLQKLQKMLRMRQQFMI 166 (351)
Q Consensus 119 r~l~~~~~~l~-----------------------------~a~~~L~ea~~~L~~---e~~~~~L~~l~~~L~~rR~~lv 166 (351)
+.|-.+.+.|. ++..-|+..++++.. -++..++..+...+...+..+.
T Consensus 95 k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~ 174 (383)
T PF04100_consen 95 KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELK 174 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHH
Confidence 44333333221 111112222222221 1222346688888899999999
Q ss_pred HHhhhhc
Q 018759 167 SQVSFLY 173 (351)
Q Consensus 167 ~qL~~Iy 173 (351)
.++..=|
T Consensus 175 ~qI~~df 181 (383)
T PF04100_consen 175 EQIFEDF 181 (383)
T ss_pred HHHHHHH
Confidence 9998744
No 32
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.39 E-value=33 Score=29.34 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
|++.|.....+...++.+|..+-..+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.92 E-value=1.1e+02 Score=35.15 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=40.3
Q ss_pred ceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018759 27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL 73 (351)
Q Consensus 27 ~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l 73 (351)
+-+.|-.+-..-+.|.++..-|+..++....++.+|+.......+..
T Consensus 269 ~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r 315 (1074)
T KOG0250|consen 269 AKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEAR 315 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679888888889999999999999999999999999888776654
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.92 E-value=68 Score=37.39 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=16.4
Q ss_pred chhhHHHH--HHHHHHHHHHHHHhcCCCC
Q 018759 308 DATRAAYA--VFLLNKGTFNLRNRINRSW 334 (351)
Q Consensus 308 ~~~rF~ya--V~LLNknI~qL~~~~Gl~~ 334 (351)
+++.-.|+ +.=|||-++.++.++..+|
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 34433333 3447888888887776655
No 35
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.77 E-value=77 Score=35.97 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=51.5
Q ss_pred HHHHHHhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018759 36 QELARLWSLSSA----LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (351)
Q Consensus 36 ~~L~rL~~L~~~----iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~r 111 (351)
.+|-||--|++. +|.+..+-+....+++.+..... +...+++.++..+...+..++..+. .+.+++++..++
T Consensus 382 dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE---~Lsr~~d~aEs~iadlkEQVDAAlG-AE~MV~qLtdkn 457 (1243)
T KOG0971|consen 382 DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE---RLSRELDQAESTIADLKEQVDAALG-AEEMVEQLTDKN 457 (1243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHhhc
Confidence 335555444433 22333333334444444444331 2334455555555544444443333 346667777777
Q ss_pred HHHHHHHHHHHHHhhHHH---HHHHHHHHhHHHh
Q 018759 112 ERLSMEVRSLLVAGTALS---VARKRLQESNRLL 142 (351)
Q Consensus 112 eeL~~~ir~l~~~~~~l~---~a~~~L~ea~~~L 142 (351)
-+|..+++.|.+....|+ .....|+|.++.+
T Consensus 458 lnlEekVklLeetv~dlEalee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 458 LNLEEKVKLLEETVGDLEALEEMNEQLQESNREL 491 (1243)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666655443 4444566654433
No 36
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.55 E-value=39 Score=28.95 Aligned_cols=7 Identities=43% Similarity=0.900 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018759 80 EEMRERL 86 (351)
Q Consensus 80 ~~~~~rl 86 (351)
..++..+
T Consensus 62 ~~lr~e~ 68 (132)
T PF07926_consen 62 QQLREEL 68 (132)
T ss_pred HHHHHHH
Confidence 3333333
No 37
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.55 E-value=22 Score=32.45 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
..|..-+.++..++..+++++..+-..
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 344566667777777777776655444
No 38
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=79.07 E-value=32 Score=31.83 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccc--cchHHHHHHHHHHHH
Q 018759 90 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG--YGHLQKLQKMLRMRQ 162 (351)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~--~~~L~~l~~~L~~rR 162 (351)
+..++..++..+++....+.+-..|++.+.-...-...+...++..+..-..|+.|+. ..+|..++.+++.-+
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555666666666654444443444444444444455555432 233556666555444
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.88 E-value=87 Score=32.63 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~ 93 (351)
++..|.+-+++...+...+...|..+-+...........+.+.+..+...+..+
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666444443333333344444444444444443
No 40
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.57 E-value=80 Score=35.20 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 36 ~~L~rL~~L~~~-iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
-.+++...|... |..|..-...=..+++.+|+..... ..++++..+.++ ......+++++++++++++|
T Consensus 491 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~---~~~~e~~~~~~~-------~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 491 FEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEEL---ERELEQKAEEAE-------ALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 346677777655 5566666555566777777764322 122333333333 33333444445555555555
Q ss_pred HHHHH
Q 018759 115 SMEVR 119 (351)
Q Consensus 115 ~~~ir 119 (351)
..+.+
T Consensus 561 ~~~~~ 565 (782)
T PRK00409 561 QEEED 565 (782)
T ss_pred HHHHH
Confidence 44443
No 41
>PRK12705 hypothetical protein; Provisional
Probab=78.39 E-value=89 Score=33.19 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=6.0
Q ss_pred HHHHcCCCCCcc
Q 018759 251 IASYLEVPLRYP 262 (351)
Q Consensus 251 ls~YL~VpLpYP 262 (351)
++..||+.-..|
T Consensus 294 a~~~lgi~~~~~ 305 (508)
T PRK12705 294 VLEELGIFDLKP 305 (508)
T ss_pred HHHHhccccccH
Confidence 444555544444
No 42
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=78.27 E-value=34 Score=27.63 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
+|..+++......++|+.-++..++..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~ 31 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERD 31 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666667777777777777654
No 43
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=77.27 E-value=58 Score=36.29 Aligned_cols=25 Identities=16% Similarity=-0.134 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCc
Q 018759 310 TRAAYAVFLLNKGTFNLRNRINRSWI 335 (351)
Q Consensus 310 ~rF~yaV~LLNknI~qL~~~~Gl~~~ 335 (351)
.+.+.|...|.+=|..... .|++.+
T Consensus 712 ~~~eeA~~~l~~fl~~a~~-~g~~~v 736 (782)
T PRK00409 712 MRYEEALERLDKYLDDALL-AGYGEV 736 (782)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCCEE
Confidence 4677777777766655443 244443
No 44
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.68 E-value=90 Score=31.61 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=16.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.++...+.++....++|..+|...|+.
T Consensus 230 ~~I~~~~~~~~~~L~kl~~~i~~~lek 256 (359)
T PF10498_consen 230 KSIESALPETKSQLDKLQQDISKTLEK 256 (359)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666677776666665
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.32 E-value=97 Score=36.07 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCcccCCccCCCch--hhHHHH--HHHHHHHHHHHHHhcCCCCcccccccccccccccCC
Q 018759 296 KPAEFPLFLEGQDA--TRAAYA--VFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLDTS 351 (351)
Q Consensus 296 ~~r~fPLf~~~~~~--~rF~ya--V~LLNknI~qL~~~~Gl~~~D~~~~~~~~~~~~~~~ 351 (351)
.||-|-|.-.+.++ .-|-.+ =.|..+|++|.=+ ++.-..|-|+.||+|.+
T Consensus 693 vPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtR------iaygk~rr~RVvTL~G~ 746 (1293)
T KOG0996|consen 693 VPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATR------IAYGKDRRWRVVTLDGS 746 (1293)
T ss_pred cchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHH------HhhcCCCceEEEEecce
Confidence 46777776444333 233333 3577777777643 45556788899999863
No 46
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.11 E-value=1.1e+02 Score=34.57 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
+-.|..+..+.+.+..+++.+++.
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~e 355 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEE 355 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHH
Confidence 445566666666666666655554
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.97 E-value=1.3e+02 Score=33.17 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
.||.+|..+.+.=+.+...|++++.+....+.
T Consensus 474 ~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~ 505 (697)
T PF09726_consen 474 NKLQNLVQARQQDKQSLQQLEKRLAEERRQRA 505 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788877777777777777776666554
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.58 E-value=1e+02 Score=36.01 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=12.3
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQADDKKQTL 58 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L 58 (351)
++..+.+|.|.+..|+.+.-.+++.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4444555555555555544444433
No 49
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=75.43 E-value=67 Score=29.51 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018759 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGT 126 (351)
Q Consensus 76 ~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~ 126 (351)
.+++...+.++..+...++.-.....+..+.+.++..+|..+...+.....
T Consensus 77 ~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~ 127 (201)
T PF12072_consen 77 RKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREE 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555555555555566665555555554444443
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=74.90 E-value=1.4e+02 Score=33.01 Aligned_cols=8 Identities=25% Similarity=0.040 Sum_probs=4.5
Q ss_pred cceeccCC
Q 018759 269 HTYINDYA 276 (351)
Q Consensus 269 rSyI~D~i 276 (351)
.-+|.|.+
T Consensus 814 ~~lilDEp 821 (880)
T PRK03918 814 PLLILDEP 821 (880)
T ss_pred CeEEEeCC
Confidence 34566774
No 51
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.64 E-value=61 Score=36.08 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCc
Q 018759 310 TRAAYAVFLLNKGTFNLRNRINRSWI 335 (351)
Q Consensus 310 ~rF~yaV~LLNknI~qL~~~~Gl~~~ 335 (351)
.+++.|+..|.+=|.+.+ .-|++.+
T Consensus 701 ~~~~eA~~~l~~~ld~a~-~~g~~~v 725 (771)
T TIGR01069 701 QRSEEALDRLEKFLNDAL-LAGYEVV 725 (771)
T ss_pred CCHHHHHHHHHHHHHHHH-HCCCCEE
Confidence 588888888888776543 2344444
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.59 E-value=83 Score=30.17 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 018759 158 LRMRQQFMISQV 169 (351)
Q Consensus 158 L~~rR~~lv~qL 169 (351)
+...|..++..+
T Consensus 161 ~~~~~~~L~~~l 172 (239)
T COG1579 161 LSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHhc
Confidence 344444444444
No 53
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.57 E-value=1.8e+02 Score=34.04 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=22.0
Q ss_pred hhhhHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQEL-ARLWSLSSALSQADDKKQTLQQKLQS 64 (351)
Q Consensus 31 ~~~~~~~L-~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (351)
|..-+.+| .+|..+...|+.+....+.++.++..
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~ 632 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQ 632 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333344 56677788888888777777766644
No 54
>PRK11637 AmiB activator; Provisional
Probab=74.51 E-value=1.1e+02 Score=31.35 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=3.3
Q ss_pred HHhHhhHH
Q 018759 237 SATALGYI 244 (351)
Q Consensus 237 isaALGyv 244 (351)
.|++=|.|
T Consensus 343 ~A~~~G~V 350 (428)
T PRK11637 343 KAIADGRV 350 (428)
T ss_pred EecCCeEE
Confidence 34444444
No 55
>PHA03246 large tegument protein UL36; Provisional
Probab=73.92 E-value=67 Score=40.01 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=81.4
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhHH----------HHHHHHHHHHHHHHHHHHhhhHHH
Q 018759 35 DQELARLWSLSSALSQADDKKQTLQ-QKLQSLIQVKAESLKRSNEL----------EEMRERLEARRLLMEKMSMRSKVE 103 (351)
Q Consensus 35 ~~~L~rL~~L~~~iqda~~~~~~L~-~qI~~lLe~~~~~l~~~~~l----------~~~~~rl~~~~~~~~~~~~~~~~~ 103 (351)
..+|.|+..|+.++.++...-.... ..+..++..-.+.+++...+ ++.++||+.++..++.+.+..+..
T Consensus 996 ~AELeRF~aLsAAv~~~~d~~~~~~~~~lde~iR~aedlvrqak~l~~~kl~~~Ls~e~R~rl~~Rr~evEtl~~~aR~R 1075 (3095)
T PHA03246 996 LTELERLHELESRIASYTDLETTVDLQKLDEALKLANSIVKLTKGLDGAKLASSLSSDIREKIRQKRSETETLIARLSAR 1075 (3095)
T ss_pred hhHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888776654333211 22233333322333333322 478889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHhHHHhhcccccchH--------HHHHHHHHHHHHHHHHHhhhh
Q 018759 104 KEDAKNQEERLSMEVRSLLVAGTAL---SVARKRLQESNRLLAGEKGYGHL--------QKLQKMLRMRQQFMISQVSFL 172 (351)
Q Consensus 104 ~~~~~k~reeL~~~ir~l~~~~~~l---~~a~~~L~ea~~~L~~e~~~~~L--------~~l~~~L~~rR~~lv~qL~~I 172 (351)
.++++.+++++-.+++.+..-...| -++-.-|......+-+ +.+-| .++..+|+..-|.|+.|-..+
T Consensus 1076 ~~eikaar~~~Y~~L~~lLrPL~~FvGLRaa~~~l~~L~~sip~--~~~~l~~~~~~AP~~V~~alrsdLW~Lf~QYRea 1153 (3095)
T PHA03246 1076 YAEVKAAVDGLYSSIRKLLRPLQNFAGLRALDSTVKTITDSIPP--GMGSFESFLASAPPDVIGALRSDLWVLFTQYKTI 1153 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHhhcCC--ccccHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876654332 1233333322222221 11212 145566666667777776655
Q ss_pred c
Q 018759 173 Y 173 (351)
Q Consensus 173 y 173 (351)
.
T Consensus 1154 L 1154 (3095)
T PHA03246 1154 L 1154 (3095)
T ss_pred H
Confidence 3
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.88 E-value=1.2e+02 Score=34.22 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=54.3
Q ss_pred cceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 018759 26 VKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKE 105 (351)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~ 105 (351)
-++++.+.++.. +..+-|..+|.++..+.+.+-.+.|++-..+..++-.+..+.+..+.+ +..+.....+.+
T Consensus 318 tkylh~enmklt-rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv-------e~elqsL~~l~a 389 (1265)
T KOG0976|consen 318 TKYLHLENMKLT-RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV-------EEELQSLLELQA 389 (1265)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 344444444433 234556677777777777777777777666655544444443333333 333333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018759 106 DAKNQEERLSMEVRSLLVAGTALSVARKRLQ 136 (351)
Q Consensus 106 ~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ 136 (351)
+...+.++|+..+-.+.....+-+++...|+
T Consensus 390 erqeQidelKn~if~~e~~~~dhe~~kneL~ 420 (1265)
T KOG0976|consen 390 ERQEQIDELKNHIFRLEQGKKDHEAAKNELQ 420 (1265)
T ss_pred HHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Confidence 5556666666666544444333333333333
No 57
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.72 E-value=52 Score=31.08 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 105 ~~~~k~reeL~~~ir~l~ 122 (351)
.++.|+-|++......|.
T Consensus 182 ~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 334444444444444333
No 58
>PF15456 Uds1: Up-regulated During Septation
Probab=73.23 E-value=60 Score=27.94 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 21 IDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 21 ~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
.|+..-.++.|+|+++-=..+..|++-|.-+..+.. |+.+|.+......
T Consensus 11 ~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~ 59 (124)
T PF15456_consen 11 GDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLS 59 (124)
T ss_pred HHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 466777888999988876667777777776666655 7777766555443
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=1.6e+02 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018759 73 LKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (351)
Q Consensus 73 l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (351)
..++.+++++....+.....+....++++...+.
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555555555544444433
No 60
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.51 E-value=35 Score=36.53 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
..+.+.++..+..+...+.+.+.+.+++...++++++.++++..+
T Consensus 215 ~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 215 QKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333344444444444444444444444444444444444444333
No 61
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.31 E-value=1.1e+02 Score=29.95 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=41.2
Q ss_pred ehhhhHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh----hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 018759 30 EWEDYDQEL-ARLWSLSSALSQADDKKQTLQQKLQSLIQVK----AESL----KRSNELEEMRERLEARRLLMEKMSMRS 100 (351)
Q Consensus 30 ~~~~~~~~L-~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~----~~~l----~~~~~l~~~~~rl~~~~~~~~~~~~~~ 100 (351)
=|.++-..+ .+.-+...-+.+-.+....+++.++.-|.+. .+.. +..-++....++++.....-.+...+.
T Consensus 17 ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~L 96 (333)
T KOG1853|consen 17 YWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQL 96 (333)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366555442 2223334444444444444444444444332 1111 112233444444444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018759 101 KVEKEDAKNQEERLSMEVRSLLVAGTALS 129 (351)
Q Consensus 101 ~~~~~~~~k~reeL~~~ir~l~~~~~~l~ 129 (351)
+.-..+..+.+|+|+..||.|..+...|+
T Consensus 97 eddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33344444455555555554444443333
No 62
>PRK02224 chromosome segregation protein; Provisional
Probab=71.05 E-value=1.8e+02 Score=32.41 Aligned_cols=6 Identities=33% Similarity=0.185 Sum_probs=3.3
Q ss_pred eeccCC
Q 018759 271 YINDYA 276 (351)
Q Consensus 271 yI~D~i 276 (351)
+|.|.+
T Consensus 815 ~ilDEp 820 (880)
T PRK02224 815 LILDEP 820 (880)
T ss_pred eEecCC
Confidence 455664
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.97 E-value=1.1e+02 Score=30.14 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=2.3
Q ss_pred eEEece
Q 018759 210 LTILGL 215 (351)
Q Consensus 210 ~tI~Gl 215 (351)
|.|.++
T Consensus 294 w~~~~~ 299 (325)
T PF08317_consen 294 WKIVSI 299 (325)
T ss_pred cEEEEE
Confidence 333333
No 64
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.96 E-value=1.7e+02 Score=32.12 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCCC
Q 018759 319 LNKGTFNLRNRINRSW 334 (351)
Q Consensus 319 LNknI~qL~~~~Gl~~ 334 (351)
+.-|+++.+...|-+|
T Consensus 563 ~a~nLA~~lA~~g~rv 578 (754)
T TIGR01005 563 IEANAAALIASGGKRA 578 (754)
T ss_pred HHHHHHHHHHhCCCeE
Confidence 3445555555556555
No 65
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.83 E-value=73 Score=27.92 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018759 108 KNQEERLSMEV 118 (351)
Q Consensus 108 ~k~reeL~~~i 118 (351)
+++.++|..+.
T Consensus 81 e~~i~rL~~EN 91 (135)
T TIGR03495 81 EQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHcC
Confidence 33333343333
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.75 E-value=1e+02 Score=29.64 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
.||++--.-+..+...+..|+.+|+.+-....
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~ 42 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKG 42 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhccc
Confidence 35566666677888888999999988887743
No 67
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=70.14 E-value=1.1e+02 Score=31.58 Aligned_cols=15 Identities=13% Similarity=0.168 Sum_probs=9.1
Q ss_pred HHHhHhhHHHHHHHH
Q 018759 236 RSATALGYIAHVVSL 250 (351)
Q Consensus 236 ~isaALGyvAhlV~L 250 (351)
.++.+++.|.-++.+
T Consensus 423 rt~~t~~LV~l~~~~ 437 (455)
T KOG3850|consen 423 RTASTFFLVFLLAFF 437 (455)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777766555443
No 68
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.07 E-value=66 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQK 61 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~q 61 (351)
++|.+|+.+|.+.+.++..|.++
T Consensus 16 n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHh
Confidence 57788899999999999888554
No 69
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.52 E-value=1.2e+02 Score=30.00 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018759 50 QADDKKQTLQQKLQS 64 (351)
Q Consensus 50 da~~~~~~L~~qI~~ 64 (351)
+.....+.|+.+++.
T Consensus 176 ~l~~~~~~L~~e~~~ 190 (312)
T smart00787 176 KLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.03 E-value=1.5e+02 Score=32.14 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=6.8
Q ss_pred HHHHHHHHHhHHHhh
Q 018759 129 SVARKRLQESNRLLA 143 (351)
Q Consensus 129 ~~a~~~L~ea~~~L~ 143 (351)
++++.-|.+..+.|.
T Consensus 418 e~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 418 EKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHhHHHHHHHHHH
Confidence 444544544444443
No 71
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=68.97 E-value=36 Score=27.46 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=35.7
Q ss_pred CcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 25 NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 25 ~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
+.--+.-.+|..-=..|-.|..||-....+.++|..++..+|+.++
T Consensus 19 ~~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 19 EDDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455666666667777889999999999999999999999864
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.81 E-value=1.1e+02 Score=28.99 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018759 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 135 (351)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L 135 (351)
.++++.+-...+...-..+...+...+.-++.+++..+.++.++.+|......+......+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333333333333333333444444444444444444555555544444444443
No 73
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=68.64 E-value=1.5e+02 Score=30.54 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHh
Q 018759 107 AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLL 142 (351)
Q Consensus 107 ~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L 142 (351)
+.++...|..++..+......+...+.++.+..+.+
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~ 382 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREA 382 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHH
Confidence 444445555555555555555555555554444333
No 74
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=68.59 E-value=49 Score=30.75 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred cccCCCCCcceeehhh--hHHHHHHHhcHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 018759 18 SKAIDPENVKVIEWED--YDQELARLWSLSSALSQADDKK--------QTLQQKLQSLIQV 68 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~--~~~~L~rL~~L~~~iqda~~~~--------~~L~~qI~~lLe~ 68 (351)
.+.||...+.-=+||+ |+.+|..|-.+-+.++.+-..+ .-++.|.+.+|.=
T Consensus 83 ~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~Y 143 (195)
T PF12761_consen 83 EKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDY 143 (195)
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Confidence 3467777788889999 6777755544444444333331 3356677777763
No 75
>PRK11281 hypothetical protein; Provisional
Probab=68.43 E-value=1.3e+02 Score=35.09 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=6.1
Q ss_pred hhhhHHHHHHH
Q 018759 31 WEDYDQELARL 41 (351)
Q Consensus 31 ~~~~~~~L~rL 41 (351)
-.+|+++|.-|
T Consensus 62 ~~~l~~tL~~L 72 (1113)
T PRK11281 62 QQDLEQTLALL 72 (1113)
T ss_pred HHHHHHHHHHH
Confidence 45666665444
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.25 E-value=1.8e+02 Score=32.27 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 81 EMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 81 ~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
+++++-......+++++....+.-.++.++.+.++..|+.|..+.
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRl 621 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRL 621 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555566666666666666666554
No 77
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=68.05 E-value=42 Score=33.68 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCcceeecCC
Q 018759 241 LGYIAHVVSLIASYLEVPLRYPLRLGGS 268 (351)
Q Consensus 241 LGyvAhlV~Lls~YL~VpLpYPi~~~gS 268 (351)
.+..--+|+++..|..-.--|-++-.|-
T Consensus 216 f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~ 243 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQRGCLYRLRALGK 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 3333445666666665555555555544
No 78
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.90 E-value=79 Score=27.17 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=51.8
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHH
Q 018759 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS--MRSKVEKEDAKN 109 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~--~~~~~~~~~~~k 109 (351)
..+++.++++-.|.+-++.-...+..++.+++++-.+..+ +....+=...- ..++.+. .....+..++++
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E-le~l~eD~~vY-------k~VG~llvk~~k~~~~~eL~e 77 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE-LEKLDEDAPVY-------KKVGNLLVKVSKEEAVDELEE 77 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccHHH-------HHhhhHHhhhhHHHHHHHHHH
Confidence 4577888999999999999999999999888875444321 11111111111 1122111 123455566666
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 018759 110 QEERLSMEVRSLLVAGTALS 129 (351)
Q Consensus 110 ~reeL~~~ir~l~~~~~~l~ 129 (351)
+.|.|.-++.+|...-+.+.
T Consensus 78 r~E~Le~ri~tLekQe~~l~ 97 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555554443
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.77 E-value=2.8e+02 Score=33.51 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred cccCCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHH
Q 018759 18 SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA----ESLKRSNELEEMRERLEARRLLM 93 (351)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~----~~l~~~~~l~~~~~rl~~~~~~~ 93 (351)
+.|-+.-..+.-.|...+....++-.|..-+.++... ...+++.+.++..-. ..+....+++....+.+.....+
T Consensus 492 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1486)
T PRK04863 492 SEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQR-LRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570 (1486)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3333333444556666666666666666666665541 223334444444322 12233445666666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 94 EKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
+..+......+.++..+.++|.++|..+....
T Consensus 571 ~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 571 SESVSEARERRMALRQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66667777777888889999999997666554
No 80
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=67.77 E-value=1.3e+02 Score=29.49 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl 86 (351)
.+++++..|-.+-+..++|+.....+++|..+|..+-.. ++ ....|.++++.|
T Consensus 122 ~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k--~P--~s~kl~~LeqEL 174 (271)
T PF13805_consen 122 RLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK--DP--QSPKLVVLEQEL 174 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--TTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc--CC--CChHHHHHHHHH
Confidence 467778888888888888888888888888888875332 22 223455555544
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.13 E-value=2.6e+02 Score=32.95 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccceeeCCC
Q 018759 153 KLQKMLRMRQQFMISQVSFLYPVKILVGP 181 (351)
Q Consensus 153 ~l~~~L~~rR~~lv~qL~~IyPI~~~~~~ 181 (351)
.........|..++.+++.-|+|..++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1311)
T TIGR00606 357 DRHQEHIRARDSLIQSLATRLELDGFERG 385 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCc
Confidence 44455667888999999999999877654
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.78 E-value=2.3e+02 Score=32.09 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=12.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKL 62 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI 62 (351)
++-+++.-++|+..+++-+.-..
T Consensus 345 k~egfddk~~eLEKkrd~al~dv 367 (1265)
T KOG0976|consen 345 KAEGFDDKLNELEKKRDMALMDV 367 (1265)
T ss_pred hhcchhHHHHHHHHHHHHHHHhH
Confidence 45556666666655555554333
No 83
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.78 E-value=80 Score=34.09 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 57 TLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 123 (351)
Q Consensus 57 ~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~ 123 (351)
-.-++++.+|-.+...+..+|+|.-....|=...+.+.-...-++--++.++..+..|+.+|+.+.+
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEE 364 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEE 364 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888888877666665555554443333444444444455555555554443
No 84
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=1.8e+02 Score=30.83 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=10.8
Q ss_pred CcceeehhhhHHHH
Q 018759 25 NVKVIEWEDYDQEL 38 (351)
Q Consensus 25 ~~~~~~~~~~~~~L 38 (351)
++-++.|+||+.-+
T Consensus 330 PVpvvGF~dL~~R~ 343 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRL 343 (508)
T ss_pred ceeccchHHHHHHH
Confidence 45678899998775
No 85
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.68 E-value=2.1e+02 Score=31.80 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~ 87 (351)
=+..+-..++++..|+.+++-.-+....++. ...+++++..++
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~ 145 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELA 145 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHH
Confidence 3444444445555555554444333333333 344444444444
No 86
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.18 E-value=3.2e+02 Score=33.84 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 018759 154 LQKMLRMRQQFMISQVSFL 172 (351)
Q Consensus 154 l~~~L~~rR~~lv~qL~~I 172 (351)
....+...|+.+..++..+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666543
No 87
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=65.82 E-value=84 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 018759 112 ERLSMEVRSLLVAGTALSVARKRLQ 136 (351)
Q Consensus 112 eeL~~~ir~l~~~~~~l~~a~~~L~ 136 (351)
+.|+..+.+|......+.....+|+
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.25 E-value=2e+02 Score=30.94 Aligned_cols=36 Identities=6% Similarity=0.284 Sum_probs=31.7
Q ss_pred ehhhhHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHH
Q 018759 30 EWEDYDQELARLWS-LSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 30 ~~~~~~~~L~rL~~-L~~~iqda~~~~~~L~~qI~~l 65 (351)
-|.+|++-|..+.+ +.+-|.+...+.+.|..+|++.
T Consensus 218 ~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 218 LEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988 8888999999999999999844
No 89
>PRK10869 recombination and repair protein; Provisional
Probab=65.23 E-value=1.9e+02 Score=30.78 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLME 94 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~ 94 (351)
|..++....+|-.|...-++.....+.|+-||+++=+.+-.+ .--.+|.+...++....+..+
T Consensus 163 y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~-gE~eeL~~e~~~L~n~e~i~~ 225 (553)
T PRK10869 163 YQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQP-GEFEQIDEEYKRLANSGQLLT 225 (553)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 555566666666667777777788888888888776654221 122334444444444333333
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.09 E-value=2.4e+02 Score=31.36 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=8.4
Q ss_pred HHHHHHHHhHHHhhccc
Q 018759 130 VARKRLQESNRLLAGEK 146 (351)
Q Consensus 130 ~a~~~L~ea~~~L~~e~ 146 (351)
.+.+.|.||-+.|..|+
T Consensus 153 iae~qleEALesl~~ER 169 (717)
T PF09730_consen 153 IAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555443
No 91
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.89 E-value=91 Score=26.44 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl 86 (351)
+|..-++.....-..++++|+.+...+...-...++..-..+.+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777788887777777654434444444433333
No 92
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.72 E-value=2.7e+02 Score=31.45 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=8.2
Q ss_pred EeceecCCCc
Q 018759 212 ILGLHLTILP 221 (351)
Q Consensus 212 I~Gl~LP~~~ 221 (351)
+||-++|+..
T Consensus 462 vCg~~l~~~~ 471 (908)
T COG0419 462 VCGQELPEEH 471 (908)
T ss_pred CCCCCCCcHH
Confidence 8999998864
No 93
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.61 E-value=2.4e+02 Score=30.87 Aligned_cols=24 Identities=4% Similarity=0.026 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccce
Q 018759 153 KLQKMLRMRQQFMISQVSFLYPVK 176 (351)
Q Consensus 153 ~l~~~L~~rR~~lv~qL~~IyPI~ 176 (351)
.+..+-...+..+=.++...+.|-
T Consensus 447 ~V~~~s~~l~~~ie~E~~~f~~~~ 470 (632)
T PF14817_consen 447 AVAPQSQELRDCIEREVRAFQAIP 470 (632)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 455555555666666666655554
No 94
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=61.94 E-value=1.4e+02 Score=30.12 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 018759 36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNEL 79 (351)
Q Consensus 36 ~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l 79 (351)
..+..+..|+..++.+..+.++|+..++.++.+..+..+.+.++
T Consensus 134 ~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 134 WCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777888888888888887777766554433333
No 95
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.28 E-value=1.8e+02 Score=30.93 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018759 151 LQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL 169 (351)
+..+...|...|+.....+
T Consensus 362 l~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 362 LDKAAVALSLIRRKAAERL 380 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555655555544444
No 96
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.95 E-value=1.1e+02 Score=32.17 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 49 SQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 49 qda~~~~~~L~~qI~~lLe~~ 69 (351)
...-.+...++.+++.++.++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N 82 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISEN 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 97
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.68 E-value=1.2e+02 Score=26.96 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~ 63 (351)
.-++....+.+.++..+.
T Consensus 88 ~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333433333
No 98
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=60.40 E-value=2.3e+02 Score=29.97 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES---------------LKRSNELEEMRERLEARRLLMEK 95 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~---------------l~~~~~l~~~~~rl~~~~~~~~~ 95 (351)
+.+|.+.+-..-+|..=+..+......|+.++....+..... -....+|+++...|+..+.-+..
T Consensus 227 l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 227 LEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554555555556666666777777777666622211 12345666666666655555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q 018759 96 MSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 96 ~~~~~~~~~~~~~k~reeL~~~i 118 (351)
+......++.++.+.+.++..-.
T Consensus 307 L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655555544433
No 99
>PLN03188 kinesin-12 family protein; Provisional
Probab=60.32 E-value=3.5e+02 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhc
Q 018759 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 144 (351)
Q Consensus 100 ~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~ 144 (351)
.++-++-+++....|+.++|+-+++-.+..+---+|.||.+.+..
T Consensus 1171 reker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~ 1215 (1320)
T PLN03188 1171 REKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTV 1215 (1320)
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555554333333222333456666555553
No 100
>PRK12704 phosphodiesterase; Provisional
Probab=60.21 E-value=2.4e+02 Score=30.02 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018759 151 LQKLQKMLRMRQQFMISQVS 170 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL~ 170 (351)
+..+...++.....++++.-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (520)
T PRK12704 160 LEKVEEEARHEAAVLIKEIE 179 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666653
No 101
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.18 E-value=98 Score=25.58 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=22.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.+++.++.+..+..-++.....+..|+.++++.--+.
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666665554443
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.93 E-value=1.5e+02 Score=27.65 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQSLI 66 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~lL 66 (351)
+..-+.++..+.+.|+.+++.+-
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 103
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.69 E-value=2e+02 Score=29.09 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 018759 150 HLQKLQKMLRMRQQFM 165 (351)
Q Consensus 150 ~L~~l~~~L~~rR~~l 165 (351)
.|.+++..|.+-+..+
T Consensus 329 Plv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEI 344 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666665555444
No 104
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=59.52 E-value=1.4e+02 Score=31.54 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018759 50 QADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQ 110 (351)
Q Consensus 50 da~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~ 110 (351)
|+.-..+.|...|..+|.+-.+ +....+.+++.-+..+....-+.+.+++.++++
T Consensus 496 da~SS~eTll~niq~llkva~d------nar~qekQiq~Ek~ELkmd~lrerelreslekq 550 (641)
T KOG3915|consen 496 DALSSIETLLTNIQGLLKVAID------NARAQEKQIQLEKTELKMDFLRERELRESLEKQ 550 (641)
T ss_pred ccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777766321 122222333333444444444555555555554
No 105
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=59.45 E-value=1.3e+02 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 018759 156 KMLRMRQQFMISQVSF 171 (351)
Q Consensus 156 ~~L~~rR~~lv~qL~~ 171 (351)
..+...|+.++.++..
T Consensus 133 ~a~~elk~eii~~~~~ 148 (167)
T PRK08475 133 KMEREVVEEVLNELFE 148 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555566666543
No 106
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=59.43 E-value=2.9e+02 Score=30.79 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHhh
Q 018759 128 LSVARKRLQESNRLLA 143 (351)
Q Consensus 128 l~~a~~~L~ea~~~L~ 143 (351)
+..+..+|.+.++.|.
T Consensus 146 ~~~~a~~l~~m~~sL~ 161 (766)
T PF10191_consen 146 IAKIADRLAEMQRSLA 161 (766)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444554444444
No 107
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.14 E-value=3.6e+02 Score=31.83 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=18.7
Q ss_pred ehhhhHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 30 EWEDYDQELAR----LWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 30 ~~~~~~~~L~r----L~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
.-++++..+.. |..|...+.+.....+.++.+|+.+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666544 3334444444455555555555555
No 108
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.98 E-value=2e+02 Score=28.75 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCcceeehhhhHHHHHHHhc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018759 24 ENVKVIEWEDYDQELARLWS------LSSALSQADDKKQTLQQKLQSLIQVKAESLK 74 (351)
Q Consensus 24 ~~~~~~~~~~~~~~L~rL~~------L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~ 74 (351)
.....++|+++-..+.++.+ +...+.++...-+....+|+.+|+.-.....
T Consensus 134 ~t~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~l~~l~~~~~ 190 (359)
T COG1463 134 RTQVPIDLEDLLGDLLLLLGGLDPDRLNAILNEAAAALAGTGPQLNALLDNLAQFTD 190 (359)
T ss_pred CCcCcccHHHHHHHHHHHhccCCchhhHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 55677999999999877755 5666777777777788888888887655543
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.08 E-value=2.7e+02 Score=29.97 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=15.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.++-..|.++...+.+++.+|..+=+..
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444556666666666655555554443
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.91 E-value=1.6e+02 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKL 62 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI 62 (351)
.||-.|..-++++..+.+++..+.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444443
No 111
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.50 E-value=2.2e+02 Score=33.27 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=14.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQS 64 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (351)
-.+...++..|.++-...+.++++|+.
T Consensus 64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 334444455555555555666666554
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.22 E-value=2e+02 Score=28.36 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHhHhhHHHHHHHHHHHHc--CCCCCcceeecCCcceeccCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHH
Q 018759 236 RSATALGYIAHVVSLIASYL--EVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAA 313 (351)
Q Consensus 236 ~isaALGyvAhlV~Lls~YL--~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~ 313 (351)
.+-+=|.++.++...+..-- ++.|||.|. .=.|.|. +....+....++.
T Consensus 241 am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~----~~~I~~~-------------------------si~~~~~~~~~WT 291 (314)
T PF04111_consen 241 AMVAFLDCLQQLAEFVEKRDPQSFELPYKID----KDKIGGV-------------------------SIKLQFNSEEEWT 291 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----SS-EC----TTEECTC-------------------------ES-STTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccceecc----CCccCCe-------------------------eeeecCCChhHHH
Confidence 45566677777766666544 478999995 2222222 2222223445999
Q ss_pred HHHHHHHHHHHHHHHh
Q 018759 314 YAVFLLNKGTFNLRNR 329 (351)
Q Consensus 314 yaV~LLNknI~qL~~~ 329 (351)
.|+..|=.|+-|++..
T Consensus 292 ~AlK~lLtnlKw~l~~ 307 (314)
T PF04111_consen 292 KALKYLLTNLKWLLAW 307 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 113
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=56.98 E-value=4.7e+02 Score=32.50 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q 018759 158 LRMRQQFMISQV 169 (351)
Q Consensus 158 L~~rR~~lv~qL 169 (351)
+...|..=+..+
T Consensus 1154 ~~~k~e~e~~~l 1165 (1930)
T KOG0161|consen 1154 LNKKREAEVQKL 1165 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 114
>PTZ00491 major vault protein; Provisional
Probab=56.46 E-value=2.2e+02 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=7.8
Q ss_pred hHHHHHHhHhhHHHH
Q 018759 232 KEVQRSATALGYIAH 246 (351)
Q Consensus 232 ~~~e~isaALGyvAh 246 (351)
.++.-.++|=|.+.|
T Consensus 832 sPiNLf~ta~gl~g~ 846 (850)
T PTZ00491 832 SPINLFNTANGLIGG 846 (850)
T ss_pred CchhHHhhhhhhhcC
Confidence 344455566665543
No 115
>PHA03247 large tegument protein UL36; Provisional
Probab=55.87 E-value=3.4e+02 Score=34.77 Aligned_cols=137 Identities=22% Similarity=0.236 Sum_probs=80.8
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhhhhHH----------HHHHHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQADDKKQT------------LQQKLQSLIQVKAESLKRSNEL----------EEMRERLEARRL 91 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~------------L~~qI~~lLe~~~~~l~~~~~l----------~~~~~rl~~~~~ 91 (351)
...+|.|+..|+.++..+...-.. ...-+..++..-.+.+++...+ .+.++||+.++.
T Consensus 912 ~~AeL~RF~~LsAAv~qa~~~~~~~~p~~~~~~~~~~~~l~~~~~r~aed~vrqak~l~~~~~~~~Ls~e~r~rl~~r~~ 991 (3151)
T PHA03247 912 GLAELERFEALDAALRQELESEAAFVPAPGAAPYADAGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLRARAR 991 (3151)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcCcccccccccccccchHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHH
Confidence 445688888899888876652210 0111122222222222222222 478889999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHhHHHhhcccccchH--------HHHHHHHHH
Q 018759 92 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL---SVARKRLQESNRLLAGEKGYGHL--------QKLQKMLRM 160 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l---~~a~~~L~ea~~~L~~e~~~~~L--------~~l~~~L~~ 160 (351)
.++.+....+...++++.+|+++-.+++.+..-...| -++-.-|......+-++ .+-| .++..+|+.
T Consensus 992 evEt~~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvGLRaa~~~l~~L~~~ip~~--~~~l~~~~~~AP~~V~~~l~s 1069 (3151)
T PHA03247 992 AIEAMLEEARERAEAARAARERFFQKLQGVLRPLPDFGGLRAAPAVLATLRADLPGG--WTDLPDAAQAAPPEVRAALRA 1069 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccHhHHHHHHhhcccc--cccHHHHHHhCChhhHHHHHH
Confidence 9999999999999999999999999999876654332 12222232222222221 1111 145556666
Q ss_pred HHHHHHHHhhhh
Q 018759 161 RQQFMISQVSFL 172 (351)
Q Consensus 161 rR~~lv~qL~~I 172 (351)
.-|.++.|...+
T Consensus 1070 dLW~Lf~QYRea 1081 (3151)
T PHA03247 1070 DLWGLLGQYREA 1081 (3151)
T ss_pred HHHHHHHHHHHH
Confidence 667777776554
No 116
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.76 E-value=1.7e+02 Score=28.13 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018759 106 DAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (351)
Q Consensus 106 ~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~e 137 (351)
++.+..++|+.....+..+...+..--.+|.+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333433
No 117
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.56 E-value=1e+02 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=22.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
-.++..|+++..+...|..+|+..-+.-.
T Consensus 17 ~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 17 DRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888888888887776654
No 118
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.19 E-value=3.9e+02 Score=30.98 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Q 018759 310 TRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTC 343 (351)
Q Consensus 310 ~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~~~~ 343 (351)
..|.-+-+-||+|.+++...-..+..|.+.||+.
T Consensus 815 ~s~sse~esl~rDl~a~~rels~elr~a~~rq~~ 848 (1195)
T KOG4643|consen 815 KSCSSECESLRRDLVATRRELSLELRRALDRQHN 848 (1195)
T ss_pred hhhcchhhhhhhhHHHhhhhhhhHHHHHHHhhcc
Confidence 3777788999999999999888888888888764
No 119
>PRK09039 hypothetical protein; Validated
Probab=54.01 E-value=2.4e+02 Score=28.20 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018759 151 LQKLQKMLRMRQQFMISQVS 170 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL~ 170 (351)
+..+...|...-...+.+|.
T Consensus 174 i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 174 IADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333444443
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.92 E-value=1.2e+02 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLI 66 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lL 66 (351)
|.|+.++-..+-...++.+.+..|.+..-
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~ 145 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESAS 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555555555555555555544443
No 121
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.21 E-value=2.9e+02 Score=29.55 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHhhhhccceee
Q 018759 107 AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (351)
Q Consensus 107 ~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL~~IyPI~~~ 178 (351)
..++-|.+..++.++..-.-.-.-+..+...++..--.-...++++.++.+.+..|..-+.|+..=|--.+-
T Consensus 176 ~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~ikQlWedfd~kQ~ 247 (828)
T KOG4182|consen 176 RQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFIKQLWEDFDEKQG 247 (828)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555544433221112222222232222222346788999999999999999999887765543
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.87 E-value=3e+02 Score=28.95 Aligned_cols=7 Identities=43% Similarity=0.544 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 018759 152 QKLQKML 158 (351)
Q Consensus 152 ~~l~~~L 158 (351)
.++++||
T Consensus 438 ~dLqEQl 444 (493)
T KOG0804|consen 438 TDLQEQL 444 (493)
T ss_pred HHHHHHH
Confidence 3444443
No 123
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.85 E-value=3.1e+02 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHcCCC
Q 018759 242 GYIAHVVSLIASYLEVP 258 (351)
Q Consensus 242 GyvAhlV~Lls~YL~Vp 258 (351)
|..+|++..+.+.|-++
T Consensus 494 g~~~~~~s~~~S~l~~~ 510 (582)
T PF09731_consen 494 GLLGHLLSYLFSLLLFR 510 (582)
T ss_pred CHHHHHHHHHHheeeee
Confidence 67888888888877654
No 124
>PRK03918 chromosome segregation protein; Provisional
Probab=52.59 E-value=3.6e+02 Score=29.83 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.1
Q ss_pred eehhhhHHH
Q 018759 29 IEWEDYDQE 37 (351)
Q Consensus 29 ~~~~~~~~~ 37 (351)
+.++.|+..
T Consensus 155 ~~~~~~~~~ 163 (880)
T PRK03918 155 LGLDDYENA 163 (880)
T ss_pred hCCHHHHHH
Confidence 444444443
No 125
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.38 E-value=2.4e+02 Score=27.88 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQVKA----ESLKRSNELEEMRE-RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~~~----~~l~~~~~l~~~~~-rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~ 122 (351)
||+-.....+|+.++.+-....+ +-...+..|..|++ |++.=+.+++. .-+.++++|...+|++-|.++.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEA-----QLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEA-----QLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666554443322 22223344444443 56666666664 2334455555666666665433
No 126
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.05 E-value=3e+02 Score=28.67 Aligned_cols=6 Identities=33% Similarity=0.174 Sum_probs=3.0
Q ss_pred eeccCC
Q 018759 271 YINDYA 276 (351)
Q Consensus 271 yI~D~i 276 (351)
+|.|.+
T Consensus 500 lilDEp 505 (562)
T PHA02562 500 LILDEV 505 (562)
T ss_pred EEEecc
Confidence 344664
No 127
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=51.81 E-value=4.9e+02 Score=31.07 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=3.5
Q ss_pred cCCCCCcc
Q 018759 255 LEVPLRYP 262 (351)
Q Consensus 255 L~VpLpYP 262 (351)
|+++--|-
T Consensus 1218 lDyR~w~~ 1225 (1353)
T TIGR02680 1218 LDYRRWHR 1225 (1353)
T ss_pred hchhhheE
Confidence 44444433
No 128
>PF13514 AAA_27: AAA domain
Probab=51.77 E-value=4e+02 Score=30.80 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=29.0
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
.|.++...+..+..+..-|+......+.+..+++.++..-.
T Consensus 734 ~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~ 774 (1111)
T PF13514_consen 734 LLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLG 774 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666666667777777777777777777777777776643
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.24 E-value=3.2e+02 Score=28.77 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 018759 55 KQTLQQKLQSLIQ 67 (351)
Q Consensus 55 ~~~L~~qI~~lLe 67 (351)
.++..+..+..++
T Consensus 349 len~k~~~e~~~~ 361 (493)
T KOG0804|consen 349 LENQKQYYELLIT 361 (493)
T ss_pred HHhHHHHHHHHHH
Confidence 3334444444443
No 130
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=50.31 E-value=1.7e+02 Score=25.51 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 018759 60 QKLQSLIQVKAE 71 (351)
Q Consensus 60 ~qI~~lLe~~~~ 71 (351)
.-|..+++.|.+
T Consensus 45 ~Pi~~~l~~R~~ 56 (156)
T CHL00118 45 KPLLKVLDERKE 56 (156)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 131
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.14 E-value=2.3e+02 Score=26.82 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=18.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
|..+...+.++...+..++.+++......
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~ 68 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARA 68 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777666554
No 132
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.00 E-value=3.9e+02 Score=29.48 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 018759 315 AVFLLNKGTFNLRNRI 330 (351)
Q Consensus 315 aV~LLNknI~qL~~~~ 330 (351)
.|...|..|.-||..-
T Consensus 447 ~~EIYNe~i~DlL~~~ 462 (670)
T KOG0239|consen 447 MLEIYNEAIRDLLSDE 462 (670)
T ss_pred hhHHHHHHHHHhcccc
Confidence 4556677787777654
No 133
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.98 E-value=2.2e+02 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=10.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~ 63 (351)
||-.|..-+++|....+....+..
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 134
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.78 E-value=2.1e+02 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.++..|...+.+.......|+.+|+..-..+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666666666666666666664443
No 135
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=49.63 E-value=2.8e+02 Score=27.68 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=30.7
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVK-AESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~-~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i 118 (351)
|-+|.+-|.-++++.+.=+..||.-|..- +.+.....++++++++-+....-++ ...+...+++...|.+++++
T Consensus 250 Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~----~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 250 LDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS----SRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444444333321 1122223344444444432222222 23344455555555555544
No 136
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=49.51 E-value=2.7e+02 Score=27.54 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQ 59 (351)
Q Consensus 44 L~~~iqda~~~~~~L~ 59 (351)
+....+.|+.++..|-
T Consensus 89 vEekyrkAMv~naQLD 104 (302)
T PF09738_consen 89 VEEKYRKAMVSNAQLD 104 (302)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3455555555544443
No 137
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.38 E-value=4.9e+02 Score=30.38 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=8.0
Q ss_pred cCCcceeccCCC
Q 018759 266 GGSHTYINDYAP 277 (351)
Q Consensus 266 ~gSrSyI~D~i~ 277 (351)
.+|.-||.|.|-
T Consensus 1087 ~PaPf~vLDEVD 1098 (1163)
T COG1196 1087 RPAPFYVLDEVD 1098 (1163)
T ss_pred CCCCeeeeccch
Confidence 345567789874
No 138
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.34 E-value=3.7e+02 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 50 QADDKKQTLQQKLQSL 65 (351)
Q Consensus 50 da~~~~~~L~~qI~~l 65 (351)
.+.....+|..+++.+
T Consensus 110 ~~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 110 KLEIEITKLREELKEL 125 (546)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3333344444444333
No 139
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.15 E-value=2.2e+02 Score=26.36 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 018759 59 QQKLQSLIQVKAES 72 (351)
Q Consensus 59 ~~qI~~lLe~~~~~ 72 (351)
=..|..+|+.|...
T Consensus 75 ~~pI~~vLe~R~~~ 88 (204)
T PRK09174 75 LPRIGGIIETRRDR 88 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666665543
No 140
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.04 E-value=2.8e+02 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~ 63 (351)
+...++.+....+.++.+|.
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~ 161 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELA 161 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 141
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.58 E-value=2.6e+02 Score=27.00 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018759 53 DKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (351)
Q Consensus 53 ~~~~~L~~qI~~lLe~~~~-~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (351)
.-.+-++.+|...+..+.+ +......+.+++..+......+...+...+...+.
T Consensus 42 ~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~ 96 (291)
T PF10475_consen 42 HYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADEN 96 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333 23344444444444444444443333333333333
No 142
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.64 E-value=2.3e+02 Score=26.14 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.5
Q ss_pred ehhhhHHH
Q 018759 30 EWEDYDQE 37 (351)
Q Consensus 30 ~~~~~~~~ 37 (351)
+...|++.
T Consensus 13 ~iK~YYnd 20 (201)
T PF13851_consen 13 EIKNYYND 20 (201)
T ss_pred HHHHHHHH
Confidence 33444444
No 143
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.64 E-value=4.5e+02 Score=29.45 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=41.3
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~ree 113 (351)
+.+..-++..|...+.-+..+...-.+ .+.+.++..+.-+...++-..+++-..+..++.+.-.+.+++..++.+.++.
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777776655554444333 5555555554444444444444444444444444444455555555554444
Q ss_pred HH
Q 018759 114 LS 115 (351)
Q Consensus 114 L~ 115 (351)
++
T Consensus 186 ee 187 (916)
T KOG0249|consen 186 EK 187 (916)
T ss_pred HH
Confidence 43
No 144
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.53 E-value=1e+02 Score=30.58 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHhhcccc-cchHHHHHHHHHHHHHHHHHHh
Q 018759 128 LSVARKRLQESNRLLAGEKG-YGHLQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 128 l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~~L~~rR~~lv~qL 169 (351)
...+..+|..+..++.+-.+ +.+=...-..+......++++.
T Consensus 272 ~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 272 IEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
Confidence 35556667777666664322 1221223345566666666665
No 145
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.27 E-value=2.8e+02 Score=26.72 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe 67 (351)
.-+..+..+.+.++++++...+
T Consensus 142 ~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 142 AEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.21 E-value=2.9e+02 Score=29.00 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKL 62 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI 62 (351)
...+.++..+++.++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 84 EAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 147
>PLN03086 PRLI-interacting factor K; Provisional
Probab=45.53 E-value=1.4e+02 Score=32.13 Aligned_cols=40 Identities=35% Similarity=0.335 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHh
Q 018759 99 RSKVEKEDAKNQEERLSMEVR-SLLVAGTALSVARKRLQES 138 (351)
Q Consensus 99 ~~~~~~~~~~k~reeL~~~ir-~l~~~~~~l~~a~~~L~ea 138 (351)
+.+++++++.++||++.+.-+ +-..+..+..+|++..+|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (567)
T PLN03086 29 RERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQES 69 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788889999998776653 2333444555666666554
No 148
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.28 E-value=3.2e+02 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~ 72 (351)
+...|...+.+....++.|..+++.+-+.+.+.
T Consensus 14 K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdel 46 (294)
T COG1340 14 KRKQLKEEIEELKEKRDELRKEASELAEKRDEL 46 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777788888888888888877776444
No 149
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.24 E-value=4e+02 Score=28.25 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018759 151 LQKLQKMLRMRQQFMISQVS 170 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL~ 170 (351)
+..+...++.....++.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (514)
T TIGR03319 154 LEEVEEEARHEAAKLIKEIE 173 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665553
No 150
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.52 E-value=1.5e+02 Score=23.23 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=23.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~ 72 (351)
+=|.+|...+++...+.+.++.+++.+..+-.+-
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~l 52 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDL 52 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456667777888888888888877777665433
No 151
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=44.33 E-value=1.9e+02 Score=24.98 Aligned_cols=28 Identities=4% Similarity=0.238 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
....-|.++.....++...|+.+|+...
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~ 30 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQ 30 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556777777778888888877753
No 152
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.27 E-value=2.5e+02 Score=29.73 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=2.7
Q ss_pred cceeehh
Q 018759 26 VKVIEWE 32 (351)
Q Consensus 26 ~~~~~~~ 32 (351)
+--+.|+
T Consensus 310 Vd~~~W~ 316 (508)
T KOG3091|consen 310 VDQRIWR 316 (508)
T ss_pred cCHHHHH
Confidence 3333443
No 153
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.86 E-value=2.9e+02 Score=29.19 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=17.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.+|-..+++...+.+.|.++=+.+.+++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN 89 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAEN 89 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555
No 154
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.84 E-value=5e+02 Score=29.95 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
..++|+.--.-.|+.+=+.+.+-+....-..+++.++.-|++...+.+....+......+.+..+.+++.+.++. +-
T Consensus 945 ~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~---Ke 1021 (1243)
T KOG0971|consen 945 AEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRK---KE 1021 (1243)
T ss_pred HHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH---HH
Confidence 455555555555555555566555444445678888888888887777765555555556666666666666643 22
Q ss_pred hHHHHHHHHHHHhHHHhhcc
Q 018759 126 TALSVARKRLQESNRLLAGE 145 (351)
Q Consensus 126 ~~l~~a~~~L~ea~~~L~~e 145 (351)
..+..+-..|+..-..|+.|
T Consensus 1022 ~efeetmdaLq~di~~lEse 1041 (1243)
T KOG0971|consen 1022 KEFEETMDALQADIDQLESE 1041 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 23344444444444444443
No 155
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.81 E-value=4e+02 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
++..|.+.|+++..+.+.++.+++.+-..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666655544443
No 156
>PF15556 Zwint: ZW10 interactor
Probab=43.80 E-value=2.9e+02 Score=26.15 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 018759 58 LQQKLQSLIQV 68 (351)
Q Consensus 58 L~~qI~~lLe~ 68 (351)
|++...+.++.
T Consensus 71 LKAtYqehVEa 81 (252)
T PF15556_consen 71 LKATYQEHVEA 81 (252)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 157
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.24 E-value=4e+02 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.|..+...|.+...+..+|+.+|.++=..
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~ 74 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETE 74 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777776665443
No 158
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.97 E-value=2.7e+02 Score=25.60 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=24.1
Q ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018759 43 SLSSALSQADD---KKQTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (351)
Q Consensus 43 ~L~~~iqda~~---~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~ 87 (351)
++..++.+... ....|..+|+.+|.-.........+...++.++.
T Consensus 73 ~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 73 SLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444433 4556677777777765555444455544444443
No 159
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=42.80 E-value=5.5e+02 Score=29.13 Aligned_cols=21 Identities=0% Similarity=0.115 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~ 68 (351)
|+...++.+.+...++.+...
T Consensus 884 IK~~~~tq~~~~~~~d~~~~~ 904 (1259)
T KOG0163|consen 884 IKMPRITQREMNSEYDVAVKN 904 (1259)
T ss_pred hcccccchHHHHHHHHHHHHH
Confidence 333344444444444444433
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.54 E-value=3.1e+02 Score=26.08 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 018759 57 TLQQKLQSLIQVK 69 (351)
Q Consensus 57 ~L~~qI~~lLe~~ 69 (351)
.+..+++.+++.+
T Consensus 36 e~~kE~~~L~~Er 48 (230)
T PF10146_consen 36 EYRKEMEELLQER 48 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 161
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.48 E-value=4.5e+02 Score=28.02 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=4.0
Q ss_pred HHHhhhhcc
Q 018759 166 ISQVSFLYP 174 (351)
Q Consensus 166 v~qL~~IyP 174 (351)
+.++...||
T Consensus 221 ~~~~~~~~P 229 (569)
T PRK04778 221 LKELQTELP 229 (569)
T ss_pred HHHHHHHhh
Confidence 344444444
No 162
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.24 E-value=1.7e+02 Score=27.66 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 018759 34 YDQELARL 41 (351)
Q Consensus 34 ~~~~L~rL 41 (351)
|+..|..|
T Consensus 107 ~~~~l~~l 114 (262)
T PF14257_consen 107 FDSFLDEL 114 (262)
T ss_pred HHHHHHHH
Confidence 33333333
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.85 E-value=4.6e+02 Score=27.97 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
...|.++....+.+...|+.+++.
T Consensus 107 ~~~l~~~e~~i~~i~~~l~~L~~~ 130 (560)
T PF06160_consen 107 EEQLDEIEEDIKEILDELDELLES 130 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 164
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.79 E-value=1.8e+02 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~ 63 (351)
+.++.+......+...|+
T Consensus 7 ~~l~~l~~~~~~~~~~~~ 24 (127)
T smart00502 7 ELLTKLRKKAAELEDALK 24 (127)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 334444444443333333
No 165
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=41.08 E-value=3e+02 Score=25.62 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018759 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 76 ~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~ 122 (351)
...++.+++||+.....+++.-.+.=.+.+.+.---++|......+.
T Consensus 33 ~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~ 79 (214)
T PF04344_consen 33 AEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELK 79 (214)
T ss_dssp TTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777766666665444444444444444555555554443
No 166
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.71 E-value=4.3e+02 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=24.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLE 87 (351)
Q Consensus 42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~-l~~~~~l~~~~~rl~ 87 (351)
.-+..+|++..-..++|+.|+|++++..... .+.+.++..|++|++
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344555556666666666666666654322 244455555555543
No 167
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.61 E-value=2.3e+02 Score=24.11 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 102 VEKEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 102 ~~~~~~~k~reeL~~~ir~l~ 122 (351)
.+.+-++++.+.|...+..+.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~ 114 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 168
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.53 E-value=5.1e+02 Score=28.12 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 018759 151 LQKLQKMLRMRQQFMISQVSFL 172 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL~~I 172 (351)
++.+-.+|...=.+++.++..|
T Consensus 714 iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 714 IQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544445566666544
No 169
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.26 E-value=6.5e+02 Score=29.21 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=0.0
Q ss_pred CcccCCCC--CcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-----
Q 018759 17 TSKAIDPE--NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEAR----- 89 (351)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~----- 89 (351)
|-+|.+.+ .+..++..|++... ..|.+++.++..--.+++..++.-....+...+-.....+++..
T Consensus 167 TekAig~~~ll~~h~eL~~lr~~e-------~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~ 239 (1072)
T KOG0979|consen 167 TEKAIGAEELLQYHIELMDLREDE-------KSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKK 239 (1072)
T ss_pred HHHhcCchhhHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------HHHHHHHHhhhHHHHHHHHH---HHHHHHHHH----HHHHHHhhHHHHHHHHHHHhHHHhh-----
Q 018759 90 --------------RLLMEKMSMRSKVEKEDAKN---QEERLSMEV----RSLLVAGTALSVARKRLQESNRLLA----- 143 (351)
Q Consensus 90 --------------~~~~~~~~~~~~~~~~~~~k---~reeL~~~i----r~l~~~~~~l~~a~~~L~ea~~~L~----- 143 (351)
++..+.+++..+++.+++.. ++++|..++ .........+.++..++++.-+-+.
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~ 319 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE 319 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhhhh
Q 018759 144 GEKGYGHLQKLQKMLRMRQQFMISQVSFL 172 (351)
Q Consensus 144 ~e~~~~~L~~l~~~L~~rR~~lv~qL~~I 172 (351)
.+.....+..++..-..++.++..---.|
T Consensus 320 v~~~~~~le~lk~~~~~rq~~i~~~~k~i 348 (1072)
T KOG0979|consen 320 VEEKKNKLESLKKAAEKRQKRIEKAKKMI 348 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 170
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=39.88 E-value=4.9e+02 Score=27.73 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=11.5
Q ss_pred HHhHhhHHHHHHHHHHHHc
Q 018759 237 SATALGYIAHVVSLIASYL 255 (351)
Q Consensus 237 isaALGyvAhlV~Lls~YL 255 (351)
+...+..+..++..|..+|
T Consensus 278 ~~~V~~~l~~vf~fL~~~L 296 (593)
T PF06248_consen 278 PKEVFSNLLLVFEFLHQHL 296 (593)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655
No 171
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=39.74 E-value=1.7e+02 Score=22.44 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 018759 57 TLQQKLQSLIQV 68 (351)
Q Consensus 57 ~L~~qI~~lLe~ 68 (351)
.|+.+|+.+|..
T Consensus 4 ~Le~kle~Li~~ 15 (65)
T TIGR02449 4 ALAAQVEHLLEY 15 (65)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 172
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=39.59 E-value=3.6e+02 Score=26.07 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 018759 151 LQKLQKMLRMRQQFM 165 (351)
Q Consensus 151 L~~l~~~L~~rR~~l 165 (351)
++.++.+|+.-|..+
T Consensus 230 ~~~l~~~L~~L~~e~ 244 (289)
T COG4985 230 LAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHhhhh
Confidence 445566666655443
No 173
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.45 E-value=5.2e+02 Score=27.90 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=24.9
Q ss_pred CCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHH
Q 018759 22 DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTL 58 (351)
Q Consensus 22 ~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L 58 (351)
+.-+++.=+|+.+.+.-.||.|...-.+......+-|
T Consensus 198 e~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 198 EELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred HhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344555599999999888888776655554444444
No 174
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.28 E-value=4.7e+02 Score=27.30 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhhccceeeCC
Q 018759 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 155 ~~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
...|.-+|-.++.+|+.+-+|+.+..
T Consensus 187 ~ndL~DqRD~ll~~LS~~v~i~v~~~ 212 (483)
T PRK07521 187 ASDALDQRDKLLKQISQIVGVTTVTR 212 (483)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEEEe
Confidence 34578889999999999999998743
No 175
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=39.25 E-value=1.6e+02 Score=22.05 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018759 92 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGT 126 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~ 126 (351)
.+..++..-+....-+..++++|...+..+.....
T Consensus 45 ~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~~ 79 (84)
T PF05400_consen 45 LLRRILELDQEIRALLQARRDELKQELRQLRKGRK 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666667777777777766555543
No 176
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.06 E-value=7.3e+02 Score=29.46 Aligned_cols=13 Identities=31% Similarity=0.245 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhh
Q 018759 158 LRMRQQFMISQVS 170 (351)
Q Consensus 158 L~~rR~~lv~qL~ 170 (351)
++..+..++.+..
T Consensus 652 l~r~~~e~~~~~e 664 (1317)
T KOG0612|consen 652 LKRENQERISDSE 664 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 177
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.01 E-value=4.2e+02 Score=26.70 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQK 61 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~q 61 (351)
.+|..|...+..+.......+.+
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555554444333
No 178
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.91 E-value=3.8e+02 Score=26.18 Aligned_cols=11 Identities=18% Similarity=-0.021 Sum_probs=6.1
Q ss_pred ecCCcceeccC
Q 018759 265 LGGSHTYINDY 275 (351)
Q Consensus 265 ~~gSrSyI~D~ 275 (351)
|.|.-++|...
T Consensus 277 ~~G~V~~Is~~ 287 (346)
T PRK10476 277 FEGKVDSIGWG 287 (346)
T ss_pred EEEEEEEECCc
Confidence 55555666543
No 179
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.86 E-value=2.1e+02 Score=23.23 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018759 101 KVEKEDAKNQEERLSMEVRSLLVAGT 126 (351)
Q Consensus 101 ~~~~~~~~k~reeL~~~ir~l~~~~~ 126 (351)
..+...++++.+.+...+..+.....
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~ 87 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEE 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444443
No 180
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.85 E-value=5.4e+02 Score=27.92 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe 67 (351)
|.......+.++.++..+.+
T Consensus 344 i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 344 IEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444333333
No 181
>PHA02047 phage lambda Rz1-like protein
Probab=38.84 E-value=1.6e+02 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 84 ERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 84 ~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
.+|+..+..+..+..+.+.+....++++.|+
T Consensus 41 ~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei 71 (101)
T PHA02047 41 ARLEALEVRYATLQRHVQAVEARTNTQRQEV 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 182
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.55 E-value=99 Score=27.37 Aligned_cols=32 Identities=3% Similarity=0.048 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759 88 ARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir 119 (351)
...+..+++......+++++..++.||++-..
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLT 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33455566677777888888888888877653
No 183
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.24 E-value=6.3e+02 Score=28.49 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
+|++-+++.+...+.|+.+-+++|...
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~ 464 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVI 464 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHH
Confidence 457778888888888888888777764
No 184
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.70 E-value=1.9e+02 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.408 Sum_probs=15.7
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 018759 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKL 62 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI 62 (351)
+|.+|+.++.+-...+++|.+-...-..|..+|
T Consensus 168 Ey~rfqkeI~~~~tesd~iveEeeed~~l~rei 200 (264)
T KOG3032|consen 168 EYKRFQKEIQDDLTESDSIVEEEEEDAALTREI 200 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665554444444443333333333333
No 185
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=37.55 E-value=4.8e+02 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=11.9
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHH
Q 018759 29 IEWEDYDQELARLWSLSSALSQAD 52 (351)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~ 52 (351)
+-+.|......+|..+..-+..+.
T Consensus 252 ~~~p~~~el~qrLd~l~~RL~~am 275 (432)
T TIGR00237 252 IVSPNQDELLQRLDGFNVRLHRAF 275 (432)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554443
No 186
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=36.90 E-value=3.7e+02 Score=25.48 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018759 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 135 (351)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L 135 (351)
..+-..+......+...+.+...+...+..++++|..-+..+....+.+...+..+
T Consensus 177 ~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l 232 (291)
T TIGR00996 177 AQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDAL 232 (291)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHH
Confidence 33333344444455555555666666666666666666655555444444333333
No 187
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.73 E-value=3.5e+02 Score=25.15 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=29.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~ 95 (351)
++.+..|+..=+.+.....+|++.|+.+-+.++ +..+++..++..+...+..+..
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na---~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNA---QLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555556666665555543 3445566666666555555443
No 188
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.47 E-value=7.7e+02 Score=28.96 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 018759 78 ELEEMRERLEA 88 (351)
Q Consensus 78 ~l~~~~~rl~~ 88 (351)
++++++.+++.
T Consensus 353 ~l~~~~~~~~~ 363 (1201)
T PF12128_consen 353 QLPEWRNELEN 363 (1201)
T ss_pred hhHHHHHHHHH
Confidence 33444444433
No 189
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.46 E-value=5e+02 Score=28.45 Aligned_cols=92 Identities=13% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLL----MEKMSMRSKVEKEDAKNQEERLSMEVRSL 121 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~----~~~~~~~~~~~~~~~~k~reeL~~~ir~l 121 (351)
..|+++..+...++.++..+...-. ..--.+..++.+++..+.. +..+....+...+.+.++.+.|+.++..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~---~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTML---ANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888776665421 2222333333333333333 23333333444444555555666666666
Q ss_pred HHHhhHHHHHHHHHHHhHH
Q 018759 122 LVAGTALSVARKRLQESNR 140 (351)
Q Consensus 122 ~~~~~~l~~a~~~L~ea~~ 140 (351)
......+.....++.+.++
T Consensus 365 ~~~~~~~~~~~~e~~~L~R 383 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQR 383 (754)
T ss_pred HHHHHhCcHhHHHHHHHHH
Confidence 5555555555555544333
No 190
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=36.43 E-value=2e+02 Score=30.95 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=41.4
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ 117 (351)
|.+.-.|.+.|++.-...+.|+.+|+.-|... +.++-.+-.+++...+.+... +..-.--.++..+||+|-.+
T Consensus 137 l~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~------V~~vNsLl~qIa~lN~qI~~~-~~~g~~~NdLlDqRD~Lv~e 209 (552)
T COG1256 137 LSKAQTLVNQINNTYEQLTDLRKDINAEIAAT------VDEVNSLLKQIADLNKQIRKV-KAAGNDPNDLLDQRDQLVDE 209 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHh-ccCCCCchhHHHHHHHHHHH
Confidence 55566666666666666666666666666553 223333333443333333222 11112234566677777777
Q ss_pred HHHHHH
Q 018759 118 VRSLLV 123 (351)
Q Consensus 118 ir~l~~ 123 (351)
+..+..
T Consensus 210 Ls~~i~ 215 (552)
T COG1256 210 LSQLIG 215 (552)
T ss_pred HHhhcc
Confidence 754443
No 191
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.96 E-value=2.4e+02 Score=23.64 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=25.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
..+|..|..-|.+...+...|+.++..+++.+.
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888888888888888888874
No 192
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.68 E-value=6.7e+02 Score=28.04 Aligned_cols=90 Identities=12% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~-l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ 117 (351)
..|.++++-|+.-..+..++-++|...+...... ..-..++.+++.-+...-..+.+ .+...+..+....++...
T Consensus 33 qSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~e----iks~ae~Te~~V~eiTrd 108 (793)
T KOG2180|consen 33 QSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQE----IKSVAESTEAMVQEITRD 108 (793)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHH
Confidence 3678889989988888888888888888764432 12222333333333222222222 222233344444555555
Q ss_pred HHHHHHHhhHHHHHH
Q 018759 118 VRSLLVAGTALSVAR 132 (351)
Q Consensus 118 ir~l~~~~~~l~~a~ 132 (351)
|..|--+.+.+..+-
T Consensus 109 IKqLD~AKkNLTtSi 123 (793)
T KOG2180|consen 109 IKQLDFAKKNLTTSI 123 (793)
T ss_pred HHhhhHHHhhHHHHH
Confidence 555555554444333
No 193
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.63 E-value=5e+02 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=12.0
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHH
Q 018759 29 IEWEDYDQELARLWSLSSALSQAD 52 (351)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~ 52 (351)
+-+.++.....+|..+...|..+.
T Consensus 257 ~~~~~~~e~~q~Ld~l~~rL~~a~ 280 (438)
T PRK00286 257 LAVPDRAELLQRLQQLQQRLARAM 280 (438)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554443
No 194
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.54 E-value=5.3e+02 Score=26.81 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018759 50 QADDKKQTLQQKLQSLI 66 (351)
Q Consensus 50 da~~~~~~L~~qI~~lL 66 (351)
..-+.+..|..|..++.
T Consensus 155 ~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 155 TLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 195
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.24 E-value=5.7e+02 Score=27.07 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhccceeeCC
Q 018759 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 156 ~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
..|.-+|-.++.+|+.+-+|+.+..
T Consensus 196 ndL~DqRD~ll~eLS~~v~i~v~~~ 220 (547)
T PRK08147 196 NDLLDQRDQLVSELNQIVGVEVSVQ 220 (547)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEEe
Confidence 3678889999999999999998743
No 196
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=35.15 E-value=3.7e+02 Score=24.97 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKL 62 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI 62 (351)
+..+.|..+.+.+|+.+.
T Consensus 97 t~~LA~~eirR~~LeAQk 114 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQK 114 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566777777777663
No 197
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.15 E-value=2.7e+02 Score=28.64 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 018759 314 YAVFLLNKGTFNLRNRINRS 333 (351)
Q Consensus 314 yaV~LLNknI~qL~~~~Gl~ 333 (351)
.-..-+-..++.+....|++
T Consensus 296 ~~~~~~l~~~~~i~~~Lglp 315 (425)
T PRK05431 296 AELEELTANAEEILQKLELP 315 (425)
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 33344445556666666665
No 198
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=35.01 E-value=4.9e+02 Score=26.25 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 018759 47 ALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (351)
Q Consensus 47 ~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~ 93 (351)
.|++.......++.++..+... +....-.+..++.+++..+..+
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~---y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQR---LGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHH
Confidence 3455555555555555555433 2222334444444444444433
No 199
>PRK14161 heat shock protein GrpE; Provisional
Probab=34.98 E-value=3.5e+02 Score=24.62 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccceee
Q 018759 154 LQKMLRMRQQFMISQVSFLYPVKIL 178 (351)
Q Consensus 154 l~~~L~~rR~~lv~qL~~IyPI~~~ 178 (351)
+-.=+....+.+..-| .=|+|.++
T Consensus 100 ~~~Gv~mi~k~l~~vL-~~~Gv~~I 123 (178)
T PRK14161 100 IIAGVQMTKDELDKVF-HKHHIEEI 123 (178)
T ss_pred HHHHHHHHHHHHHHHH-HHCCCEEe
Confidence 3333444444444444 34666665
No 200
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.91 E-value=3.9e+02 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQVKAE 71 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~~~~ 71 (351)
|.+....+......|..++..+..
T Consensus 57 i~e~~~~~~~~~~~i~~~~~erdq 80 (207)
T PF05010_consen 57 IEEKQKQKELSEAEIQKLLKERDQ 80 (207)
T ss_pred HHHHHhhHHhHHHHHHHHHhhHHH
Confidence 334444444445555555554433
No 201
>PHA03332 membrane glycoprotein; Provisional
Probab=34.63 E-value=8.2e+02 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=10.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 018759 148 YGHLQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 148 ~~~L~~l~~~L~~rR~~lv~qL 169 (351)
+++|..+..++.+-=.++-.++
T Consensus 985 YQQlnsltnqv~~saskL~~qv 1006 (1328)
T PHA03332 985 YQQLNSLTNQVTQSASKLGYQV 1006 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555554444444444
No 202
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=34.61 E-value=2.7e+02 Score=26.35 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 79 l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
++|++.+|-.....++..++ .+.++++++++++..=..-+..+
T Consensus 3 ~EELRq~Ll~TTlELE~~k~---~A~EElRk~eeqi~~L~~Ll~~a 45 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKM---EANEELRKREEQIAHLKDLLKKA 45 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444444443222 23456666666655544433333
No 203
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.55 E-value=8e+02 Score=28.59 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=14.1
Q ss_pred hHHHHH------HHHHHHHHHH---HHhcCCCCc
Q 018759 311 RAAYAV------FLLNKGTFNL---RNRINRSWI 335 (351)
Q Consensus 311 rF~yaV------~LLNknI~qL---~~~~Gl~~~ 335 (351)
+|+-|+ +++.+|+.|- ...+++..+
T Consensus 609 ~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~I 642 (1200)
T KOG0964|consen 609 QFDKALKHVFGKTIVCRDLEQALRLAKKHELNCI 642 (1200)
T ss_pred hhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeE
Confidence 666555 4566677654 345555543
No 204
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.29 E-value=5.2e+02 Score=26.31 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.7
Q ss_pred HHHHHhhhhcccee
Q 018759 164 FMISQVSFLYPVKI 177 (351)
Q Consensus 164 ~lv~qL~~IyPI~~ 177 (351)
.+..|+..+.-+..
T Consensus 212 DLm~EirnLLQle~ 225 (401)
T PF06785_consen 212 DLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHhhh
Confidence 44445555554443
No 205
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.23 E-value=4.2e+02 Score=25.24 Aligned_cols=6 Identities=50% Similarity=0.905 Sum_probs=2.5
Q ss_pred Eeceec
Q 018759 212 ILGLHL 217 (351)
Q Consensus 212 I~Gl~L 217 (351)
|||+.|
T Consensus 218 i~Giel 223 (250)
T PRK14474 218 ICGIEL 223 (250)
T ss_pred ccCeEE
Confidence 444443
No 206
>PRK10698 phage shock protein PspA; Provisional
Probab=34.19 E-value=4e+02 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
-.+++..|.. +..++..+...+..++++++.+-..-
T Consensus 33 i~em~~~l~~---~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 33 IQEMEDTLVE---VRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 36777777777888888777665543
No 207
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=33.98 E-value=5.1e+02 Score=26.19 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=25.9
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 29 IEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLI 66 (351)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lL 66 (351)
|+=.||+.+|.+ +...|..+..+.+.++.++...=
T Consensus 84 iD~~~y~~al~q---Aea~la~a~~~~~~~~a~~~~~~ 118 (352)
T COG1566 84 IDPRDYRAALEQ---AEAALAAAEAQLRNLRAQLASAQ 118 (352)
T ss_pred ECcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778877755 47888888888888888876543
No 208
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.87 E-value=6.5e+02 Score=27.35 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhccceeeCC
Q 018759 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 155 ~~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
...|.-+|-.++.||+.+-+|+.+..
T Consensus 204 ~ndLlDqRD~ll~eLS~~v~i~v~~~ 229 (627)
T PRK06665 204 PNDLLDRRDLLVDKLSSLIDVSIERS 229 (627)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEEEc
Confidence 34688889999999999999998743
No 209
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=33.70 E-value=6.3e+02 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhhccceeeCC
Q 018759 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 156 ~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
..|.-+|-.|+.+|+.+.+|.....
T Consensus 197 NdLlDqRD~Lv~eLs~~i~i~V~~~ 221 (552)
T COG1256 197 NDLLDQRDQLVDELSQLIGISVSKR 221 (552)
T ss_pred hhHHHHHHHHHHHHHhhcceEEEEc
Confidence 3466678899999999999998754
No 210
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=33.69 E-value=6.3e+02 Score=27.57 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhHHHhhccccc----chHHHHH--------HHHHHHHHHH
Q 018759 100 SKVEKEDAKNQEERLSMEVRSLLVAGT--ALSVARKRLQESNRLLAGEKGY----GHLQKLQ--------KMLRMRQQFM 165 (351)
Q Consensus 100 ~~~~~~~~~k~reeL~~~ir~l~~~~~--~l~~a~~~L~ea~~~L~~e~~~----~~L~~l~--------~~L~~rR~~l 165 (351)
.+...++...+...|+.....+..... .+.++..-|.-+.+.|.-++.. ..|+... -.+...|+.|
T Consensus 390 le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Al 469 (656)
T PRK06975 390 LDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAI 469 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 444445566666666666665543332 3445555555555444433221 1122222 2356678888
Q ss_pred HHHhhhhccceeeC
Q 018759 166 ISQVSFLYPVKILV 179 (351)
Q Consensus 166 v~qL~~IyPI~~~~ 179 (351)
..++..+=-+..++
T Consensus 470 a~Di~~L~~~~~~D 483 (656)
T PRK06975 470 AQDIERLKAAPSAD 483 (656)
T ss_pred HHHHHHHhcCCcCC
Confidence 88887776655543
No 211
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=33.61 E-value=2.8e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=14.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~ 63 (351)
+|..+.-|..+.++++...+.|.
T Consensus 20 l~~qs~~i~~L~a~n~~q~~tI~ 42 (110)
T PF10828_consen 20 LWYQSQRIDRLRAENKAQAQTIQ 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665554
No 212
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=3.1e+02 Score=23.53 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018759 47 ALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 47 ~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
-+++-...-..|+.++..++..+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk 29 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQK 29 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
No 213
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=32.80 E-value=5.6e+02 Score=26.25 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=49.9
Q ss_pred hHhhHHHHHHHHHHH-HcCCCCCcceeecCCcceeccCCCC---CCCCCcccccccccCCCCCcccCCccCCCchhhHHH
Q 018759 239 TALGYIAHVVSLIAS-YLEVPLRYPLRLGGSHTYINDYAPS---IEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAY 314 (351)
Q Consensus 239 aALGyvAhlV~Lls~-YL~VpLpYPi~~~gSrSyI~D~i~~---~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~y 314 (351)
.=|.|..|++.-+=. =|--|+-|--...-=.-+|.|-.+. .+.-+. +......+|+||..+++-.+|.|
T Consensus 237 GylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~ttr~fply~k-------~~~~e~f~~glylL~qNiaqlr~ 309 (377)
T KOG2896|consen 237 GYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIETTTREFPLYTK-------SQEIEQFEYGLYLLNQNIAQLRY 309 (377)
T ss_pred HHHHHHHHHHHHHhccccccccccccccceecccCCccccccccccCccc-------cchHHHHHHHHHHHhccHHHHHH
Confidence 344555555554433 3566776665555555555555552 111010 01224578999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018759 315 AVFLLNKGTFNLR 327 (351)
Q Consensus 315 aV~LLNknI~qL~ 327 (351)
.++|.+.|+.+-+
T Consensus 310 ~~gl~t~~ld~tl 322 (377)
T KOG2896|consen 310 DCGLPTPDLDQTL 322 (377)
T ss_pred HcCCCCccHHHhh
Confidence 9999888887754
No 214
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=32.78 E-value=4.3e+02 Score=24.98 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=3.0
Q ss_pred HHhHHHhh
Q 018759 136 QESNRLLA 143 (351)
Q Consensus 136 ~ea~~~L~ 143 (351)
.++...|.
T Consensus 130 ~ea~~mL~ 137 (264)
T PF06008_consen 130 AEAQRMLE 137 (264)
T ss_pred HHHHHHHH
Confidence 33333333
No 215
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=32.54 E-value=7.9e+02 Score=27.96 Aligned_cols=10 Identities=0% Similarity=-0.044 Sum_probs=5.0
Q ss_pred CceEEeceec
Q 018759 208 GSLTILGLHL 217 (351)
Q Consensus 208 ~~~tI~Gl~L 217 (351)
..|-+.+|..
T Consensus 1063 ~KYDl~~wky 1072 (1259)
T KOG0163|consen 1063 QKYDLSKWKY 1072 (1259)
T ss_pred CccccccccH
Confidence 3455555543
No 216
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.50 E-value=8.6e+02 Score=28.37 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=10.8
Q ss_pred CCCcccCCCCCcceeehhhhHHH
Q 018759 15 TSTSKAIDPENVKVIEWEDYDQE 37 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (351)
|-|..+.+..+-.+++..++.+.
T Consensus 660 tlTGGs~~~~a~~L~~l~~l~~~ 682 (1174)
T KOG0933|consen 660 TLTGGSRSKGADLLRQLQKLKQA 682 (1174)
T ss_pred cccCCCCCCcccHHHHHHHHHHH
Confidence 44444444444445555444443
No 217
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.43 E-value=4.6e+02 Score=26.92 Aligned_cols=18 Identities=0% Similarity=-0.005 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 018759 316 VFLLNKGTFNLRNRINRS 333 (351)
Q Consensus 316 V~LLNknI~qL~~~~Gl~ 333 (351)
+.-+-+.++.++...|++
T Consensus 300 ~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 300 LEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 334445555555666655
No 218
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.86 E-value=7.5e+02 Score=28.83 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.+-|+|..++..+|.+.|.+.+...
T Consensus 204 r~eLddleae~~klrqe~~e~l~ea 228 (1195)
T KOG4643|consen 204 RNELDDLEAEISKLRQEIEEFLDEA 228 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444443
No 219
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=31.70 E-value=5.2e+02 Score=25.53 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHHHHHhH
Q 018759 132 RKRLQESN 139 (351)
Q Consensus 132 ~~~L~ea~ 139 (351)
...+..++
T Consensus 171 ~~~l~~~~ 178 (370)
T PRK11578 171 QASLDTAK 178 (370)
T ss_pred HHHHHHHH
Confidence 33333333
No 220
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.66 E-value=1.1e+03 Score=29.32 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759 57 TLQQKLQSLIQV-----KAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 57 ~L~~qI~~lLe~-----~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i 118 (351)
+-..+-+++++. ..++....+++..+++.+......++++.....++++.+.++-+.+...+
T Consensus 1289 ~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~ 1355 (1822)
T KOG4674|consen 1289 RWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEK 1355 (1822)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445554 22333444555555555555555555444444444444444444444433
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.62 E-value=4.8e+02 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 50 QADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 50 da~~~~~~L~~qI~~lLe~~ 69 (351)
|.++..+.+..+++.....+
T Consensus 132 d~ke~~ee~kekl~E~~~Ek 151 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEK 151 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544443
No 222
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.49 E-value=1e+03 Score=28.92 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHhHhhHHH---------HHHHHHHHHcCCC
Q 018759 236 RSATALGYIA---------HVVSLIASYLEVP 258 (351)
Q Consensus 236 ~isaALGyvA---------hlV~Lls~YL~Vp 258 (351)
.++|+||-.. ++...|.+.-|+|
T Consensus 701 ~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p 732 (1486)
T PRK04863 701 YFSALYGPARHAIVVPDLSDAAEQLAGLEDCP 732 (1486)
T ss_pred HHHHHHHhhhCeEEeCCHHHHHHHHHhccCCc
Confidence 4777777653 4566777777765
No 223
>PRK11281 hypothetical protein; Provisional
Probab=31.49 E-value=9.2e+02 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=10.6
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHH
Q 018759 32 EDYDQELARLWSLSSALSQADDKKQTL 58 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L 58 (351)
.++++.|. .+.+.++++......+
T Consensus 124 ~qLEq~L~---q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 124 RQLESRLA---QTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44555443 3344444444444433
No 224
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.28 E-value=1.8e+02 Score=30.76 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~l 65 (351)
+++.+...+...|++||+++
T Consensus 69 SALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554
No 225
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.07 E-value=5.1e+02 Score=25.27 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 78 ~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i 118 (351)
++.+.+..+......+...+.+.+.....+.+-...|..+|
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333333333334333333333333
No 226
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.96 E-value=5.5e+02 Score=27.58 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 018759 74 KRSNELEEMRERLEARRL 91 (351)
Q Consensus 74 ~~~~~l~~~~~rl~~~~~ 91 (351)
-.+.++++.+++++.++.
T Consensus 188 p~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 188 PNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 346677777777765544
No 227
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.89 E-value=4.7e+02 Score=28.73 Aligned_cols=103 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM----------RSKVEKEDAKN 109 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~----------~~~~~~~~~~k 109 (351)
||..+..-+.++....+..+++ +.++.-..+.....+++.+++.++...+.....+.. ..+..++++++
T Consensus 275 qL~~l~~~L~~aE~~l~~fr~~-~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~ 353 (726)
T PRK09841 275 QLPEVRSELDQAEEKLNVYRQQ-RDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQ 353 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018759 110 QEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (351)
Q Consensus 110 ~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~ 143 (351)
+.+++..++..+-.....+..-.++..-.+....
T Consensus 354 ~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~ 387 (726)
T PRK09841 354 ERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387 (726)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
No 228
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=30.68 E-value=8.4e+02 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018759 47 ALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 47 ~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.|++.++.++.|.+.++.+-++
T Consensus 59 ~i~qe~~~n~~Lsq~L~~~~~r 80 (835)
T COG3264 59 LIQQELAINDQLSQALNQQTER 80 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444
No 229
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=30.57 E-value=4.3e+02 Score=25.34 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHhhhhccceee
Q 018759 101 KVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (351)
Q Consensus 101 ~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL~~IyPI~~~ 178 (351)
....+....+..+|..-+..+....+.+.+.+.+|...-.... +.-..+..-|...+..++..+..+=|+...
T Consensus 62 ~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~-----~~a~~~~~~l~~n~~~L~~~~~~L~p~~~l 134 (267)
T PF11887_consen 62 ADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSAT-----GLADTGTDFLADNRDNLIRALDDLRPTTDL 134 (267)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555554445444444433222111 112356667788888888888877777654
No 230
>PRK02119 hypothetical protein; Provisional
Probab=30.53 E-value=2.6e+02 Score=21.70 Aligned_cols=6 Identities=0% Similarity=0.374 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018759 82 MRERLE 87 (351)
Q Consensus 82 ~~~rl~ 87 (351)
++.++.
T Consensus 14 LE~rla 19 (73)
T PRK02119 14 LEMKIA 19 (73)
T ss_pred HHHHHH
Confidence 333333
No 231
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.42 E-value=4.6e+02 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=11.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
+|..|+.-..++..+.+.|+++.|.+
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~ 56 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNEL 56 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 232
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.99 E-value=5.4e+02 Score=26.49 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018759 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~r 111 (351)
.++.....+.-.=..-++++..+.+.|++++.+.+...................+......++...+..+.....+.++.
T Consensus 261 ~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~ 340 (498)
T TIGR03007 261 KQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARI 340 (498)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018759 112 ERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (351)
Q Consensus 112 eeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~ 143 (351)
++++.++..+-.....+..-++++..++....
T Consensus 341 ~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 341 ERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
No 233
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=7.8e+02 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=7.3
Q ss_pred hcHHHHHHHHHHHHH
Q 018759 42 WSLSSALSQADDKKQ 56 (351)
Q Consensus 42 ~~L~~~iqda~~~~~ 56 (351)
.+|..||..+.++..
T Consensus 388 ~~l~eal~~~~e~~~ 402 (652)
T COG2433 388 YPLAEALSKVKEEER 402 (652)
T ss_pred CcHHHHHHHHHhhhc
Confidence 345555555544433
No 234
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.49 E-value=2.1e+02 Score=30.21 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 018759 109 NQEERLSMEVR 119 (351)
Q Consensus 109 k~reeL~~~ir 119 (351)
+++++++.+|.
T Consensus 97 aq~~dle~KIk 107 (475)
T PRK13729 97 KQRGDDQRRIE 107 (475)
T ss_pred hhhhhHHHHHH
Confidence 44444444443
No 235
>PRK01156 chromosome segregation protein; Provisional
Probab=29.38 E-value=8.4e+02 Score=27.26 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---
Q 018759 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK--- 108 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~--- 108 (351)
.++++.+.+|-....-+.+.......+..+|+.+-.....--....++....+.++...............+...+.
T Consensus 622 ~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~ 701 (895)
T PRK01156 622 REIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018759 109 NQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (351)
Q Consensus 109 k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~ 143 (351)
.+.+++...+..+......+..+...+........
T Consensus 702 ~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~ 736 (895)
T PRK01156 702 STIEILRTRINELSDRINDINETLESMKKIKKAIG 736 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 236
>PLN03223 Polycystin cation channel protein; Provisional
Probab=29.31 E-value=3.6e+02 Score=32.35 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018759 53 DKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 53 ~~~~~L~~qI~~lLe~~ 69 (351)
.-++.|+.+++++|...
T Consensus 837 ~~~~~~~~~~~~il~kq 853 (1634)
T PLN03223 837 AGQAALEAKLDEILGKQ 853 (1634)
T ss_pred hHHHHHHhHHHHHHHHH
Confidence 33444444444444443
No 237
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.29 E-value=5.3e+02 Score=24.87 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHH
Q 018759 130 VARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMI 166 (351)
Q Consensus 130 ~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv 166 (351)
.|-.-+.+.+..+..-.+..-++.+..+|......+.
T Consensus 145 ~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~ 181 (291)
T PF10475_consen 145 GALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIE 181 (291)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHH
Confidence 3333344444444433333334444444443333333
No 238
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.24 E-value=4.8e+02 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=12.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe 67 (351)
+|..|+.-..++..+.+.|.++.|.+=.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk 56 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSK 56 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 239
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.17 E-value=4.5e+02 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.+..++..+......++++++.+...
T Consensus 41 ~a~~~~a~~~a~~~~le~~~~~~~~~ 66 (221)
T PF04012_consen 41 KARQALARVMANQKRLERKLDEAEEE 66 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665554
No 240
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.15 E-value=8.6e+02 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~ 72 (351)
-.|++.|..=+|.+..+++.|..+++++=+..+..
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45889999999999999999999999877665544
No 241
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.92 E-value=3.1e+02 Score=22.12 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 018759 111 EERLSMEVR 119 (351)
Q Consensus 111 reeL~~~ir 119 (351)
+.++..+|.
T Consensus 52 rN~~sk~I~ 60 (108)
T PF02403_consen 52 RNELSKEIG 60 (108)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 333333333
No 242
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.91 E-value=3.8e+02 Score=23.08 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=12.8
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQS 64 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (351)
++...+--|+.|-...+.-...++.|..++..
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~ 63 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRR 63 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333334444444444444333
No 243
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=28.90 E-value=7.2e+02 Score=26.40 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHH
Q 018759 55 KQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS-VARK 133 (351)
Q Consensus 55 ~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~-~a~~ 133 (351)
..+|+..|+++|+... +.+=+..++...++.....+.. .++..++.++.++-|+.++..+...-..|+ ....
T Consensus 364 inkLk~niEeLIedKY---~viLEKnd~~k~lqnLqe~la~----tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 364 INKLKENIEELIEDKY---RVILEKNDIEKTLQNLQEALAN----TQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHhHh---HhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHhHHHhh
Q 018759 134 RLQESNRLLA 143 (351)
Q Consensus 134 ~L~ea~~~L~ 143 (351)
.+++-++..+
T Consensus 437 eiQqKnksvs 446 (527)
T PF15066_consen 437 EIQQKNKSVS 446 (527)
T ss_pred HHHHhhhHHH
No 244
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.87 E-value=8.4e+02 Score=27.10 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 104 KEDAKNQEERLSMEVRSLLV 123 (351)
Q Consensus 104 ~~~~~k~reeL~~~ir~l~~ 123 (351)
.+++..+.+.|..+...+..
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544433
No 245
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.78 E-value=6.8e+02 Score=26.03 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=7.7
Q ss_pred ceeehhhhHHHHH
Q 018759 27 KVIEWEDYDQELA 39 (351)
Q Consensus 27 ~~~~~~~~~~~L~ 39 (351)
.+++.+|++-.|.
T Consensus 72 gVfqlddi~~qlr 84 (499)
T COG4372 72 GVFQLDDIRPQLR 84 (499)
T ss_pred hhhhHHHHHHHHH
Confidence 4566666666654
No 246
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=28.69 E-value=8.1e+02 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhhccceeeC
Q 018759 157 MLRMRQQFMISQVSFLYPVKILV 179 (351)
Q Consensus 157 ~L~~rR~~lv~qL~~IyPI~~~~ 179 (351)
.|.-+|-.++.||+.+-+|+.+.
T Consensus 190 dLlDqRD~ll~eLS~~v~v~v~~ 212 (649)
T PRK12715 190 ELLDHRDELLKQLSGYTDLSIFD 212 (649)
T ss_pred HhHHHHHHHHHHHHhhcCeEEEE
Confidence 68889999999999999999874
No 247
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=3.6e+02 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~~ 69 (351)
|.+++.+...|....|++|...
T Consensus 10 ~~~l~~el~~L~d~lEevL~ss 31 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSS 31 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555565554
No 248
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.26 E-value=4.2e+02 Score=23.43 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=9.1
Q ss_pred cCCCCCcceeehhhhHH
Q 018759 20 AIDPENVKVIEWEDYDQ 36 (351)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (351)
|++-+..-.++|..|-.
T Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (174)
T PRK07352 8 ATEAEGGFGLNLNLLET 24 (174)
T ss_pred HHhccCCCCCchhHHHH
Confidence 44444555566665543
No 249
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.17 E-value=5.2e+02 Score=24.46 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSMEVRS 120 (351)
Q Consensus 105 ~~~~k~reeL~~~ir~ 120 (351)
+++.+-+++++.....
T Consensus 158 ~~~~kL~~el~~~~~~ 173 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKK 173 (216)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3334444444443333
No 250
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.08 E-value=6.1e+02 Score=25.19 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKAE--SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~~--~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 107 (351)
.--++|..+--.....|+.+.+...+ ..+...++..+.+.+...+..+++.....+.+..++
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776543 234444555555555555555555444444444444
No 251
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.02 E-value=2.8e+02 Score=21.30 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.-.+....++..|.++.......+
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666655555544
No 252
>PLN02320 seryl-tRNA synthetase
Probab=27.93 E-value=4.1e+02 Score=28.30 Aligned_cols=23 Identities=9% Similarity=-0.187 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC
Q 018759 311 RAAYAVFLLNKGTFNLRNRINRS 333 (351)
Q Consensus 311 rF~yaV~LLNknI~qL~~~~Gl~ 333 (351)
.-+.-+.-+-.+++.++...|++
T Consensus 356 qs~~e~e~ll~~~e~i~~~LgLp 378 (502)
T PLN02320 356 ESESFHEELIQIEEDLFTSLGLH 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44455566778899999999986
No 253
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.92 E-value=3.7e+02 Score=22.70 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018759 104 KEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 104 ~~~~~k~reeL~~~ir~l~ 122 (351)
+..+.++..+|+++|..+.
T Consensus 53 ~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 53 NASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544433
No 254
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.79 E-value=4.9e+02 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSLI 66 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~lL 66 (351)
..-|+.|..++..|+.++..+-
T Consensus 61 ~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 61 SEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544433
No 255
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.27 E-value=3.8e+02 Score=22.57 Aligned_cols=8 Identities=0% Similarity=0.347 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 018759 62 LQSLIQVK 69 (351)
Q Consensus 62 I~~lLe~~ 69 (351)
|..+|+.|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 44444443
No 256
>PRK11519 tyrosine kinase; Provisional
Probab=26.93 E-value=7.5e+02 Score=27.17 Aligned_cols=103 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKM----------SMRSKVEKEDAKN 109 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~----------~~~~~~~~~~~~k 109 (351)
+|-.+...+.++....+..+.+ +.++.-..+.......+.+.+.++...+.....+ ....+...+.+++
T Consensus 275 ql~~l~~~L~~aE~~l~~fr~~-~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~ 353 (719)
T PRK11519 275 QLPEVRSRLDVAENKLNAFRQD-KDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALED 353 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018759 110 QEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (351)
Q Consensus 110 ~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~ 143 (351)
+.++++.++..+-.....+..-+++..-++....
T Consensus 354 ~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~ 387 (719)
T PRK11519 354 EKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYM 387 (719)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
No 257
>PRK00106 hypothetical protein; Provisional
Probab=26.92 E-value=8.1e+02 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018759 151 LQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 151 L~~l~~~L~~rR~~lv~qL 169 (351)
+..+...++.....++++.
T Consensus 175 ~~~~~~~~~~~~~~~i~~~ 193 (535)
T PRK00106 175 LAETENKLTHEIATRIREA 193 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 258
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=26.92 E-value=4.2e+02 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018759 80 EEMRERLEARRLLMEKMSMR 99 (351)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~ 99 (351)
+.+.++++..++.++.+.++
T Consensus 447 ~~lqe~L~ev~~~Lasl~aq 466 (486)
T KOG2185|consen 447 EALQERLKEVRKALASLLAQ 466 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 259
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.85 E-value=5.1e+02 Score=23.93 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018759 54 KKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 54 ~~~~L~~qI~~lLe~~~ 70 (351)
.++.+...|++.-+.+.
T Consensus 85 R~~~I~~~L~~Ae~~k~ 101 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQ 101 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555444443
No 260
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.81 E-value=2.8e+02 Score=23.44 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
.+|.+|..-|.+...+...|++++..+++.++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~ 39 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENT 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888888888887763
No 261
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=26.80 E-value=4.3e+02 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=22.4
Q ss_pred cceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 26 VKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
..-+.|+|=+ .|-+.+.+.+-..+..+.......+|+.+-+.
T Consensus 11 ~v~Vt~EDQq-~iN~Fsrl~~R~~~lk~dik~~k~~~enledA 52 (131)
T KOG1760|consen 11 DVKVTFEDQQ-NINEFSRLNSRKDDLKADIKEAKTEIENLEDA 52 (131)
T ss_pred cCcccHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788854 34444444455555555555555555554444
No 262
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.48 E-value=1.1e+03 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=23.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
=-++..|.+.++....+.+.|+.+|.++-+.+.
T Consensus 257 ~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd 289 (1174)
T KOG0933|consen 257 KDKIAKLDESLGKTDKEIESLEKEIKEIEQQRD 289 (1174)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777778888777766543
No 263
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.19 E-value=2.9e+02 Score=20.94 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018759 109 NQEERLSMEVRSLLVAG 125 (351)
Q Consensus 109 k~reeL~~~ir~l~~~~ 125 (351)
++.+.|+..++.|..+.
T Consensus 32 ~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 264
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.02 E-value=4.1e+02 Score=22.56 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=15.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
+.+|..-++.+....+....++..+.+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~d 32 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLRED 32 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444
No 265
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.90 E-value=2.2e+02 Score=23.63 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 105 ~~~~k~reeL~~~ir~l~ 122 (351)
++++.++++|..++..|.
T Consensus 44 ~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444444555555554443
No 266
>PLN02678 seryl-tRNA synthetase
Probab=25.66 E-value=6.5e+02 Score=26.31 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=3.4
Q ss_pred CCCCcce
Q 018759 257 VPLRYPL 263 (351)
Q Consensus 257 VpLpYPi 263 (351)
.-|||-+
T Consensus 319 L~lpyrv 325 (448)
T PLN02678 319 LGIPYQV 325 (448)
T ss_pred cCCCeEE
Confidence 3444555
No 267
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.62 E-value=5.3e+02 Score=23.74 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHH
Q 018759 126 TALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQF 164 (351)
Q Consensus 126 ~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~ 164 (351)
.....++..|.+..++|+.-+ .|+..|.++|..-|..
T Consensus 130 ~~a~~AQ~el~eK~qLLeaAk--~Rve~L~~QL~~Ar~D 166 (188)
T PF05335_consen 130 QVAEGAQQELAEKTQLLEAAK--RRVEELQRQLQAARAD 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 334455555555555555422 3344455555555443
No 268
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.47 E-value=6e+02 Score=24.29 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQ 59 (351)
Q Consensus 44 L~~~iqda~~~~~~L~ 59 (351)
|+.+|.+....-+.+.
T Consensus 167 L~~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 167 LSAALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHH
Confidence 4555555444443333
No 269
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.44 E-value=5.3e+02 Score=23.67 Aligned_cols=7 Identities=0% Similarity=-0.149 Sum_probs=2.8
Q ss_pred Ccceeeh
Q 018759 25 NVKVIEW 31 (351)
Q Consensus 25 ~~~~~~~ 31 (351)
.|+|...
T Consensus 27 ~PHF~pL 33 (190)
T PF05266_consen 27 SPHFSPL 33 (190)
T ss_pred CCCChhh
Confidence 3444433
No 270
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=25.17 E-value=1e+03 Score=26.92 Aligned_cols=104 Identities=18% Similarity=0.314 Sum_probs=54.5
Q ss_pred hhhHHHHHHHhcHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018759 32 EDYDQELARLWSLSSAL-----SQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~i-----qda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (351)
+++......||.|.=.| .+|......-+..+.+.|++... ..||+.+-+.| +..+.+++.+.-+....
T Consensus 446 ~~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs----~eEI~rLm~eL---R~A~~~ym~~LAeq~~~ 518 (820)
T PF13779_consen 446 EALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGAS----DEEIARLMQEL---REAMQDYMQALAEQAQR 518 (820)
T ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHH---HHHHHHHHHHHHHHhHh
Confidence 35566666777775554 46777777777777777776432 23444443333 44444444333211111
Q ss_pred H--------------HHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhHHHhh
Q 018759 107 A--------------KNQEERLSM---EVRSLLVAGTALSVARKRLQESNRLLA 143 (351)
Q Consensus 107 ~--------------~k~reeL~~---~ir~l~~~~~~l~~a~~~L~ea~~~L~ 143 (351)
- .-..+.|+. +|+.+++.| ...+|++.|.+..+.++
T Consensus 519 ~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G-~~~~A~q~L~qlq~mme 571 (820)
T PF13779_consen 519 NPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSG-RMDEARQLLEQLQQMME 571 (820)
T ss_pred CcccccCcccchhhhccCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence 0 011233333 334444444 45677888877766666
No 271
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=7.4e+02 Score=25.20 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHH
Q 018759 75 RSNELEEMRERLE 87 (351)
Q Consensus 75 ~~~~l~~~~~rl~ 87 (351)
..+++++++++|+
T Consensus 247 G~~kL~~~~etLE 259 (365)
T KOG2391|consen 247 GKQKLVAMKETLE 259 (365)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444444
No 272
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=7.4e+02 Score=25.19 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSMEV 118 (351)
Q Consensus 105 ~~~~k~reeL~~~i 118 (351)
..+.+..|-|..++
T Consensus 263 ~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 263 QSLQKNIDILKSKV 276 (365)
T ss_pred HHHHhhhHHHHHHH
Confidence 33333333333333
No 273
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=24.98 E-value=56 Score=21.91 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHH
Q 018759 309 ATRAAYAVFLLN 320 (351)
Q Consensus 309 ~~rF~yaV~LLN 320 (351)
.++|+||+-|+.
T Consensus 2 qt~FnyAw~Lv~ 13 (35)
T PF14852_consen 2 QTQFNYAWGLVK 13 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchhHHHHHHhc
Confidence 478999999986
No 274
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.90 E-value=3.3e+02 Score=21.13 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 018759 56 QTLQQKLQSLIQV 68 (351)
Q Consensus 56 ~~L~~qI~~lLe~ 68 (351)
+.|+.+|+.+++.
T Consensus 7 ~~LE~ki~~avet 19 (72)
T PF06005_consen 7 EQLEEKIQQAVET 19 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 275
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.84 E-value=5.5e+02 Score=28.10 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018759 47 ALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 47 ~iqda~~~~~~L~~qI~~l 65 (351)
-+.+...++++|..+|+++
T Consensus 94 EL~ele~krqel~seI~~~ 112 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEI 112 (907)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3445555555555554443
No 276
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.76 E-value=9.5e+02 Score=26.36 Aligned_cols=17 Identities=18% Similarity=0.045 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhccce
Q 018759 160 MRQQFMISQVSFLYPVK 176 (351)
Q Consensus 160 ~rR~~lv~qL~~IyPI~ 176 (351)
.-++..+..+-.-|.|.
T Consensus 527 ~~t~~~Ie~~e~~~gik 543 (652)
T COG2433 527 KLTLEAIEEAEEEYGIK 543 (652)
T ss_pred hhhHHHHHhHHHhhccc
Confidence 34445566666777774
No 277
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.72 E-value=7e+02 Score=24.80 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl 86 (351)
+.|+..++..|++|=..-|++-.+. .+...++++++.
T Consensus 318 ~ed~e~kkrqlerqekqeleqmaee--ekkr~eeaeerq 354 (445)
T KOG2891|consen 318 LEDAEIKKRQLERQEKQELEQMAEE--EKKREEEAEERQ 354 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhh
Confidence 5688888888888877667665443 333444444433
No 278
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=3.5e+02 Score=21.29 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 52 ~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
.+--++|+.+|...++.-.-..=-+.++.+....|..-............+.+++++..-..-+.++|+|..+
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 279
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=24.61 E-value=1.2e+03 Score=27.66 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=6.7
Q ss_pred ccccccccccccc
Q 018759 336 DYIVRCTCSLCLL 348 (351)
Q Consensus 336 D~~~~~~~~~~~~ 348 (351)
+.|.--+|-.||+
T Consensus 911 ~hRqe~~~k~~t~ 923 (1317)
T KOG0612|consen 911 LHRQELTCKDCTL 923 (1317)
T ss_pred HHHHHHHHHHHhH
Confidence 4444455555553
No 280
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.30 E-value=3.2e+02 Score=20.68 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQ 63 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~ 63 (351)
|+++|+.=...+..+..+++
T Consensus 2 lQsaL~~EirakQ~~~eEL~ 21 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELT 21 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 281
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.28 E-value=5.2e+02 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 018759 98 MRSKVEKEDAKNQEERLSMEVRSLL 122 (351)
Q Consensus 98 ~~~~~~~~~~~k~reeL~~~ir~l~ 122 (351)
++...+...+-+.|||.+.+...|.
T Consensus 36 ~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 36 AHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666665555
No 282
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=24.02 E-value=1e+03 Score=26.42 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=15.9
Q ss_pred eehhhhHHHHHHHhcHHHHHH
Q 018759 29 IEWEDYDQELARLWSLSSALS 49 (351)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iq 49 (351)
-+.++|+.-|+||.+=-++|+
T Consensus 104 ~~~~~yQerLaRLe~dkesL~ 124 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQ 124 (861)
T ss_pred CcchHHHHHHHHHhcchhhhe
Confidence 467889999999977666654
No 283
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.89 E-value=7.8e+02 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.0
Q ss_pred HHHhhhhcccee
Q 018759 166 ISQVSFLYPVKI 177 (351)
Q Consensus 166 v~qL~~IyPI~~ 177 (351)
...|..+-|...
T Consensus 385 ~~rL~~lsP~~~ 396 (438)
T PRK00286 385 AQQLEALSPLAT 396 (438)
T ss_pred HHHHHhCCChhH
Confidence 333444444443
No 284
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=23.87 E-value=5.3e+02 Score=27.91 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=32.0
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~ 95 (351)
+|.....+|-.+++.|+......+.+..+++..-......+...+++..-.+.++.++..+..
T Consensus 39 ~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~ 101 (618)
T PF06419_consen 39 EFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDA 101 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666666665555444444444444444444444444444433
No 285
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=23.79 E-value=8.4e+02 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 018759 72 SLKRSNELEEMRERLEARRLLM 93 (351)
Q Consensus 72 ~l~~~~~l~~~~~rl~~~~~~~ 93 (351)
+.+..++..++..+|+...+.+
T Consensus 276 f~~ri~etqdar~kL~~ql~k~ 297 (421)
T KOG2685|consen 276 FKKRIRETQDARNKLEWQLAKT 297 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665444443
No 286
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.72 E-value=4.8e+02 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=10.7
Q ss_pred ehhhhHHHHHHHhcHHHHH
Q 018759 30 EWEDYDQELARLWSLSSAL 48 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~i 48 (351)
+|++...+|.+|..|+.-+
T Consensus 1 ~~~~a~~al~ki~~l~~~~ 19 (149)
T PF07352_consen 1 DREEADWALRKIAELQREI 19 (149)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4777788887764444433
No 287
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=23.71 E-value=1e+02 Score=26.19 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 018759 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA-ESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 116 (351)
Q Consensus 38 L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~-~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~ 116 (351)
..|=.+|+.-.+|...=...|..++-+++..+- ++.+....+..+.+.++..+.-+..+.......+..+.+.++++..
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~ 101 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIED 101 (133)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777778888777877643 4677777777777777666666555555554444444444444444
Q ss_pred HH
Q 018759 117 EV 118 (351)
Q Consensus 117 ~i 118 (351)
.+
T Consensus 102 ~l 103 (133)
T PF06148_consen 102 KL 103 (133)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 288
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.46 E-value=6.1e+02 Score=23.64 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018759 128 LSVARKRLQE 137 (351)
Q Consensus 128 l~~a~~~L~e 137 (351)
+.....+|..
T Consensus 162 l~~v~~Dl~~ 171 (195)
T PF12761_consen 162 LKSVREDLDT 171 (195)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 289
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=23.15 E-value=5.7e+02 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=7.7
Q ss_pred hHHHHHHHhcHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQA 51 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda 51 (351)
+-+.|..+......+.++
T Consensus 80 l~~~l~~l~~~~~~~~~~ 97 (236)
T PF09325_consen 80 LSEALSQLAEAFEKISEL 97 (236)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 290
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.08 E-value=5.1e+02 Score=22.58 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=36.8
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 018759 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95 (351)
Q Consensus 34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~ 95 (351)
-+++..|.-.+..-++++......+..+|.++=..+. ..-++++.++.++...+..++.
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~---~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQ---QLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677777777777777777777665543 1234566666666555555544
No 291
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.99 E-value=7.5e+02 Score=24.50 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCCChhHHHHHHhHhhHHHHHHHHHHHHcCC
Q 018759 226 SLFTDKKEVQRSATALGYIAHVVSLIASYLEV 257 (351)
Q Consensus 226 ~~f~~~~~~e~isaALGyvAhlV~Lls~YL~V 257 (351)
..|+ ...+...|.|.|..|.-|.-+-.|..|
T Consensus 182 p~F~-~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 182 PDFN-PEKVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp TTSS-HHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3454 345678999999999999999999876
No 292
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.96 E-value=4.8e+02 Score=22.27 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCCCcccCCCCCcceeehhhhHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 13 HPTSTSKAIDPENVKVIEWEDYDQELARL----WSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~L~rL----~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~ 72 (351)
++++.|.....+++. --+.|...|.++ .+|..-|.....+++.+..+|-.+...+.+.
T Consensus 2 ~~~~~s~~~~~~~~~--~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 2 DMVSVSTSSGGPSVQ--LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred chhhhccccCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333 335566666553 5566667777777788888877777765433
No 293
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.94 E-value=4.5e+02 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSME 117 (351)
Q Consensus 105 ~~~~k~reeL~~~ 117 (351)
++++++.++|+.+
T Consensus 156 ~e~~~~l~~l~~e 168 (176)
T PF12999_consen 156 EELEKKLEELEKE 168 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 294
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.87 E-value=7.2e+02 Score=24.25 Aligned_cols=94 Identities=9% Similarity=0.118 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQ----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe----~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~ 106 (351)
....++--..|.+.-++|-|++.+--.+...-...+. ...........+..+..+++..+..++....-...+...
T Consensus 119 lk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 119 LKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555544444333333332 222222344556666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 107 AKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 107 ~~k~reeL~~~ir~l~~~ 124 (351)
+++++.+|...-.+|...
T Consensus 199 Iekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666665544443333
No 295
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=22.86 E-value=6.8e+02 Score=23.96 Aligned_cols=15 Identities=0% Similarity=-0.015 Sum_probs=7.0
Q ss_pred hhHHHHHHHhcHHHH
Q 018759 33 DYDQELARLWSLSSA 47 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~ 47 (351)
.|-+++++.+.-..-
T Consensus 122 mLn~A~~kVneAE~e 136 (239)
T PF05276_consen 122 MLNHATQKVNEAEQE 136 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444333
No 296
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.76 E-value=5.6e+02 Score=22.99 Aligned_cols=14 Identities=0% Similarity=0.228 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 018759 59 QQKLQSLIQVKAES 72 (351)
Q Consensus 59 ~~qI~~lLe~~~~~ 72 (351)
=..|..+|+.|...
T Consensus 53 ~~PI~~~l~~R~~~ 66 (181)
T PRK13454 53 LPRIGAVLAERQGT 66 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 297
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.69 E-value=8.6e+02 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhccceeeCC
Q 018759 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 156 ~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
..|.-+|-.++.+|+.+-+|+.+..
T Consensus 193 ndL~DqRD~ll~eLS~~v~i~v~~~ 217 (456)
T PRK07191 193 SDLLDQRDLQIKKLSGLIEVRVVQQ 217 (456)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEEc
Confidence 4678889999999999999998753
No 298
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.63 E-value=9.4e+02 Score=25.51 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir 119 (351)
.|.++-.++.++......-+-+==-.|.....+ ++.+.+.|+......++ .+..++.+..++.+++.++.
T Consensus 401 ~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprY------vdrl~~~L~qk~~~~~k----~~~~~~~l~~kr~e~~~e~~ 470 (507)
T PF05600_consen 401 SIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRY------VDRLVESLQQKLKQEEK----LRRKREDLEEKRQEAQEEQQ 470 (507)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 018759 120 SLLVAGTALSVARKRLQE 137 (351)
Q Consensus 120 ~l~~~~~~l~~a~~~L~e 137 (351)
.+......+-+.-+.|+.
T Consensus 471 ~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 471 ELEPKLDALVERTRELQK 488 (507)
T ss_pred HhHHHHHHHHHHHHHHHH
No 299
>PRK06443 chorismate mutase; Validated
Probab=22.54 E-value=5.4e+02 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=28.1
Q ss_pred cceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 26 VKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe 67 (351)
+++++.++++.++ ..+|.-|-+++.+|..+..+|-++=.
T Consensus 2 ~~~~dLeeLR~eI---D~ID~eIL~LL~kRm~la~eIg~~K~ 40 (177)
T PRK06443 2 VHFIDMEDLRSEI---LENTMDIIELIEKRRELARMIGIIKM 40 (177)
T ss_pred cccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777766 44588888888888888888755443
No 300
>PHA01750 hypothetical protein
Probab=22.53 E-value=1.3e+02 Score=23.26 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQK 61 (351)
Q Consensus 48 iqda~~~~~~L~~q 61 (351)
|++...+.++|++|
T Consensus 51 i~~~kikqDnl~~q 64 (75)
T PHA01750 51 IEELKIKQDELSRQ 64 (75)
T ss_pred HHHHHHhHHHHHHH
Confidence 33333333333333
No 301
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.49 E-value=6.4e+02 Score=23.57 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=50.6
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018759 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (351)
Q Consensus 32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~r 111 (351)
.+-++...-|+++..+..|+-..-+++..-|+.+-.+.. . .+..+.+...++..-..+...+++......+.+....
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE-~--Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei 152 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEE-T--LKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEI 152 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888999988888888888887766532 2 3456666667776555555555555543333333333
Q ss_pred HHH
Q 018759 112 ERL 114 (351)
Q Consensus 112 eeL 114 (351)
+++
T Consensus 153 ~~v 155 (207)
T PF05010_consen 153 AQV 155 (207)
T ss_pred HHH
Confidence 333
No 302
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=22.38 E-value=6.3e+02 Score=24.76 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 35 DQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 35 ~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
+..+.+.-+|...++.+-...+.++.+++.-|+. .+.++-.+-.++......+....+..-.-..++..+|++|
T Consensus 130 ~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~------~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~l 203 (322)
T TIGR02492 130 QAVLESAQALANSFNQTSNELQDLRKGINAEIKS------AVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLL 203 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHH
Q ss_pred HHHHHHHH
Q 018759 115 SMEVRSLL 122 (351)
Q Consensus 115 ~~~ir~l~ 122 (351)
-.++..+.
T Consensus 204 l~~LS~~v 211 (322)
T TIGR02492 204 LKELSQLI 211 (322)
T ss_pred HHHHHhHc
No 303
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.36 E-value=1.3e+03 Score=27.12 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=7.8
Q ss_pred ceeehhhhHHHHH
Q 018759 27 KVIEWEDYDQELA 39 (351)
Q Consensus 27 ~~~~~~~~~~~L~ 39 (351)
+-+.-.++++.|.
T Consensus 100 ~~~s~~~Leq~l~ 112 (1109)
T PRK10929 100 PNMSTDALEQEIL 112 (1109)
T ss_pred ccCCHHHHHHHHH
Confidence 4445577777653
No 304
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.23 E-value=4.3e+02 Score=26.87 Aligned_cols=20 Identities=20% Similarity=0.430 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe 67 (351)
++......+.++.+|+.+-+
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~ 263 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEE 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 305
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.21 E-value=6.7e+02 Score=24.84 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018759 90 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (351)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l 128 (351)
+.+..+|+.+.|...+++.-..+.|..+.+.|....+.+
T Consensus 236 k~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 236 KAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666666666666555444
No 306
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.20 E-value=1.1e+03 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhccceeeCC
Q 018759 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (351)
Q Consensus 156 ~~L~~rR~~lv~qL~~IyPI~~~~~ 180 (351)
..|.-+|-.++.||+.+-+|+.+..
T Consensus 195 ndLlDqRD~ll~eLS~~v~i~v~~~ 219 (651)
T PRK06945 195 NDLLDQRDQLVSELSKLVGVTVVQQ 219 (651)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEEc
Confidence 3577889999999999999998853
No 307
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.07 E-value=9.7e+02 Score=25.50 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhHHHhhc
Q 018759 128 LSVARKRLQESNRLLAG 144 (351)
Q Consensus 128 l~~a~~~L~ea~~~L~~ 144 (351)
+..+...+......|..
T Consensus 450 ~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 450 FFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555555554444443
No 308
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.96 E-value=7.1e+02 Score=23.86 Aligned_cols=33 Identities=9% Similarity=-0.090 Sum_probs=18.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 92 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 92 ~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
.+...+.......+.+..++.+|.+-+..+...
T Consensus 74 dL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~ 106 (267)
T PF11887_consen 74 DLLDALDNLTTTSRTLVDQRQQLDALLLSATGL 106 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333344445555566666777776666544433
No 309
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.90 E-value=7.2e+02 Score=25.96 Aligned_cols=16 Identities=0% Similarity=0.073 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcCCCC
Q 018759 319 LNKGTFNLRNRINRSW 334 (351)
Q Consensus 319 LNknI~qL~~~~Gl~~ 334 (351)
|=.+-+.++...+++-
T Consensus 304 m~~~ae~il~~LeLPy 319 (429)
T COG0172 304 MLGNAEEVLQELELPY 319 (429)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 3345566666666653
No 310
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.83 E-value=9.5e+02 Score=25.28 Aligned_cols=11 Identities=45% Similarity=0.507 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018759 55 KQTLQQKLQSL 65 (351)
Q Consensus 55 ~~~L~~qI~~l 65 (351)
+++++-++..+
T Consensus 299 ~Enlqmr~qql 309 (502)
T KOG0982|consen 299 KENLQMRDQQL 309 (502)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 311
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.81 E-value=1.4e+02 Score=27.00 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018759 55 KQTLQQKLQSLIQVK 69 (351)
Q Consensus 55 ~~~L~~qI~~lLe~~ 69 (351)
.+.+++++|..||++
T Consensus 2 LeD~EsklN~AIERn 16 (166)
T PF04880_consen 2 LEDFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 356778888888876
No 312
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.63 E-value=8.1e+02 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
-|-+|+.=++.+.+++..|..+.+.+-..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566677788888888888887777644
No 313
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=21.60 E-value=5.8e+02 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~ 68 (351)
|++.+..-+++..+...+++.
T Consensus 40 I~~~Ld~Ae~~r~eA~~l~~e 60 (154)
T PRK06568 40 VQEKVLKAEKLKEDAALLFEQ 60 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334433
No 314
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.57 E-value=4.5e+02 Score=21.45 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 106 DAKNQEERLSMEVRSLLV 123 (351)
Q Consensus 106 ~~~k~reeL~~~ir~l~~ 123 (351)
-++++.+.|..++..+..
T Consensus 91 ~l~~r~~~l~~~~~~l~~ 108 (129)
T cd00890 91 FLKKRLETLEKQIEKLEK 108 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 315
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.45 E-value=6e+02 Score=22.83 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-H
Q 018759 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS-V 130 (351)
Q Consensus 52 ~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~-~ 130 (351)
.+-+++++.++..+-+.....-....+|+.+ ..=.++.++.+.+.++..+.+++.-...-+.+-+....+..++. +
T Consensus 48 meVrekVq~~LgrveEetkrLa~ireeLE~l---~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEk 124 (159)
T PF04949_consen 48 MEVREKVQAQLGRVEEETKRLAEIREELEVL---ADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEK 124 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhh--cccccchHHHHHHH
Q 018759 131 ARKRLQESNRLLA--GEKGYGHLQKLQKM 157 (351)
Q Consensus 131 a~~~L~ea~~~L~--~e~~~~~L~~l~~~ 157 (351)
+..+.+-...+.+ +|-...+++++...
T Consensus 125 nkeK~~Lv~~L~eLv~eSE~~rmKKLEEL 153 (159)
T PF04949_consen 125 NKEKAQLVTRLMELVSESERLRMKKLEEL 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 316
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.41 E-value=4.4e+02 Score=21.22 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018759 62 LQSLIQ 67 (351)
Q Consensus 62 I~~lLe 67 (351)
++.+++
T Consensus 28 vd~i~~ 33 (108)
T PF02403_consen 28 VDEIIE 33 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 317
>PLN02678 seryl-tRNA synthetase
Probab=21.36 E-value=7.8e+02 Score=25.74 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q 018759 317 FLLNKGTFNLRNRINRS 333 (351)
Q Consensus 317 ~LLNknI~qL~~~~Gl~ 333 (351)
.-+=.+++.++...|++
T Consensus 306 e~~l~~~~~i~~~L~lp 322 (448)
T PLN02678 306 EEMLKNSEDFYQSLGIP 322 (448)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33445777888888877
No 318
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.07 E-value=1e+03 Score=25.26 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 35 DQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 35 ~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
...|.-...+...+..+..+...+...-+..-....+......++..++.++......++......+...+.+...+++|
T Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L 111 (475)
T PRK10361 32 AEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRL 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH-hHHHhhcccccchHHHHHHHHHHHHHHH
Q 018759 115 SMEVRSLLVAGTALSVARKRLQE-SNRLLAGEKGYGHLQKLQKMLRMRQQFM 165 (351)
Q Consensus 115 ~~~ir~l~~~~~~l~~a~~~L~e-a~~~L~~e~~~~~L~~l~~~L~~rR~~l 165 (351)
..+-..|.... |.....++.+ +++.|.. .|+=++++|..-+..+
T Consensus 112 ~~~F~~LA~~i--le~k~~~f~~~~~~~l~~-----ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 112 SEQFENLANRI--FEHSNRRVDEQNRQSLNS-----LLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHH
No 319
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=20.47 E-value=7.6e+02 Score=23.66 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.6
Q ss_pred eecCCcceecc
Q 018759 264 RLGGSHTYIND 274 (351)
Q Consensus 264 ~~~gSrSyI~D 274 (351)
.|.|.-.+|..
T Consensus 270 ~~~g~V~~Is~ 280 (327)
T TIGR02971 270 PLRGTVRRIGS 280 (327)
T ss_pred cEEEEEEEecc
Confidence 44555555543
No 320
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.46 E-value=7.6e+02 Score=23.63 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 018759 112 ERLSMEVRSLLV 123 (351)
Q Consensus 112 eeL~~~ir~l~~ 123 (351)
+++...++.+..
T Consensus 180 ~~~~~ev~~~e~ 191 (243)
T cd07666 180 DLLKEEIEKLED 191 (243)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 321
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=20.21 E-value=2.4e+02 Score=19.78 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQS 64 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~ 64 (351)
.+++++-| |.|.+-|.++..+.+++-..|+.
T Consensus 6 ieelkqll---~rle~eirett~sl~ninksidq 36 (46)
T PF08181_consen 6 IEELKQLL---WRLENEIRETTDSLRNINKSIDQ 36 (46)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666654 66788888887777766555543
No 322
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.20 E-value=8.7e+02 Score=24.21 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=9.2
Q ss_pred ceeehhhhHHHHHHH
Q 018759 27 KVIEWEDYDQELARL 41 (351)
Q Consensus 27 ~~~~~~~~~~~L~rL 41 (351)
+.++.+-++..|..|
T Consensus 158 ~~~~le~Lq~Klk~L 172 (306)
T PF04849_consen 158 KCIQLEALQEKLKSL 172 (306)
T ss_pred cchhHHHHHHHHHHH
Confidence 456677777665443
No 323
>PF15463 ECM11: Extracellular mutant protein 11
Probab=20.20 E-value=3.2e+02 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 101 KVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 101 ~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
.+..+.|..+.+.|..++..+...|
T Consensus 111 ~~R~eav~~~~~~l~~kL~~mk~~G 135 (139)
T PF15463_consen 111 NRRAEAVRAQGEQLDRKLEKMKEGG 135 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666666666665555444
Done!