Query 018759
Match_columns 351
No_of_seqs 165 out of 215
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 98.8 1E-08 3.5E-13 93.6 9.9 97 209-330 42-143 (210)
2 3vp7_A Vacuolar protein sortin 98.6 5.4E-08 1.9E-12 89.4 8.1 109 209-329 16-134 (220)
3 2v4h_A NF-kappa-B essential mo 86.0 13 0.00043 30.3 13.4 99 13-125 8-106 (110)
4 3vkg_A Dynein heavy chain, cyt 83.6 15 0.00053 45.2 15.6 44 126-169 2063-2107(3245)
5 2ocy_A RAB guanine nucleotide 83.6 21 0.0007 30.8 17.3 87 35-125 9-95 (154)
6 3na7_A HP0958; flagellar bioge 83.5 26 0.0009 31.9 15.7 14 156-169 160-173 (256)
7 3vkg_A Dynein heavy chain, cyt 82.3 25 0.00085 43.4 16.7 12 296-307 2182-2193(3245)
8 1i84_S Smooth muscle myosin he 82.0 6 0.00021 44.0 10.7 8 55-62 887-894 (1184)
9 2w83_C C-JUN-amino-terminal ki 81.6 14 0.00047 28.2 9.3 30 57-86 6-35 (77)
10 3i00_A HIP-I, huntingtin-inter 80.8 20 0.00068 29.5 10.9 83 46-138 15-97 (120)
11 3ghg_A Fibrinogen alpha chain; 79.7 11 0.00037 38.5 10.6 39 75-113 107-146 (562)
12 2dfs_A Myosin-5A; myosin-V, in 79.5 34 0.0012 37.9 15.5 47 77-123 984-1030(1080)
13 2v71_A Nuclear distribution pr 79.4 33 0.0011 30.4 15.5 107 23-129 7-122 (189)
14 1x79_B RAB GTPase binding effe 79.1 25 0.00084 28.7 12.5 72 30-110 7-78 (112)
15 1deq_A Fibrinogen (alpha chain 78.2 22 0.00074 34.9 11.9 33 80-112 116-148 (390)
16 2dfs_A Myosin-5A; myosin-V, in 77.7 65 0.0022 35.6 17.1 18 44-61 933-950 (1080)
17 3cvf_A Homer-3, homer protein 77.5 16 0.00056 28.0 8.7 25 100-124 43-67 (79)
18 3mq9_A Bone marrow stromal ant 72.7 72 0.0025 31.0 15.3 49 50-98 370-418 (471)
19 3na7_A HP0958; flagellar bioge 68.5 69 0.0024 29.0 19.1 7 213-219 204-210 (256)
20 3jsv_C NF-kappa-B essential mo 67.3 45 0.0015 26.4 10.3 29 100-128 59-87 (94)
21 2d4y_A HAP1, flagellar HOOK-as 66.4 1E+02 0.0035 30.2 14.6 25 155-179 131-155 (463)
22 3ghg_A Fibrinogen alpha chain; 66.4 56 0.0019 33.3 12.0 80 46-129 57-137 (562)
23 3a7p_A Autophagy protein 16; c 66.0 62 0.0021 27.7 10.6 25 46-70 28-52 (152)
24 2zuo_A MVP, major vault protei 63.7 1.7E+02 0.0056 31.7 17.2 13 232-244 837-849 (861)
25 1i84_S Smooth muscle myosin he 62.5 39 0.0013 37.6 11.1 21 45-65 870-890 (1184)
26 1fxk_A Prefoldin; archaeal pro 61.7 53 0.0018 25.3 11.8 37 33-69 2-38 (107)
27 2jee_A YIIU; FTSZ, septum, coi 59.1 59 0.002 25.0 11.1 29 41-69 8-36 (81)
28 2v66_B Nuclear distribution pr 58.3 73 0.0025 25.8 12.7 24 105-128 45-68 (111)
29 2zqm_A Prefoldin beta subunit 58.1 65 0.0022 25.2 13.4 37 33-69 7-43 (117)
30 1m1j_B Fibrinogen beta chain; 57.8 1.6E+02 0.0054 29.5 14.1 7 171-177 228-234 (464)
31 1m1j_A Fibrinogen alpha subuni 57.1 97 0.0033 31.1 11.6 33 80-112 114-146 (491)
32 4abx_A DNA repair protein RECN 56.8 56 0.0019 27.9 9.0 78 25-102 28-112 (175)
33 3plt_A Sphingolipid long chain 56.7 1.2E+02 0.004 27.7 12.9 53 30-86 88-140 (234)
34 3cve_A Homer protein homolog 1 54.4 66 0.0023 24.1 9.9 21 45-65 6-26 (72)
35 1deq_A Fibrinogen (alpha chain 51.6 1.8E+02 0.0061 28.5 12.3 78 49-129 63-140 (390)
36 2fxo_A Myosin heavy chain, car 51.1 99 0.0034 25.2 16.3 26 44-69 25-50 (129)
37 1wt6_A Myotonin-protein kinase 48.8 89 0.003 24.0 8.5 26 40-65 11-36 (81)
38 1ik9_A DNA repair protein XRCC 43.6 1.8E+02 0.0061 26.0 13.0 32 41-72 134-165 (213)
39 4fla_A Regulation of nuclear P 43.6 1.5E+02 0.0051 25.1 11.0 36 33-68 76-111 (152)
40 2ocy_A RAB guanine nucleotide 42.7 1.6E+02 0.0054 25.2 15.5 17 102-118 79-95 (154)
41 3k4t_A Virion-associated prote 42.5 41 0.0014 26.4 5.1 46 39-84 2-47 (95)
42 2eqb_B RAB guanine nucleotide 42.3 1.3E+02 0.0043 23.9 13.9 16 105-120 43-58 (97)
43 3s4r_A Vimentin; alpha-helix, 42.2 1.2E+02 0.0041 23.5 10.9 26 40-65 17-42 (93)
44 3mq7_A Bone marrow stromal ant 41.2 1.5E+02 0.005 24.3 14.0 40 86-125 48-87 (121)
45 4dk0_A Putative MACA; alpha-ha 40.8 69 0.0024 29.8 7.6 13 130-142 140-152 (369)
46 3cvf_A Homer-3, homer protein 39.3 1.3E+02 0.0043 23.0 9.7 21 45-65 12-32 (79)
47 2e7s_A RAB guanine nucleotide 37.3 65 0.0022 27.0 6.0 25 100-124 58-82 (135)
48 3f6n_A Virion-associated prote 37.2 67 0.0023 26.5 5.8 33 39-71 2-34 (129)
49 3tul_A Cell invasion protein S 36.7 2E+02 0.0068 24.5 12.4 35 33-68 8-42 (158)
50 3u1c_A Tropomyosin alpha-1 cha 34.4 1.7E+02 0.0056 22.9 12.9 8 111-118 64-71 (101)
51 3tnu_A Keratin, type I cytoske 31.7 2.1E+02 0.0071 23.2 13.3 20 48-67 40-59 (131)
52 1d7m_A Cortexillin I; coiled-c 31.0 1.9E+02 0.0065 22.6 14.9 26 40-65 5-30 (101)
53 3bas_A Myosin heavy chain, str 30.9 1.8E+02 0.006 22.2 10.2 27 43-69 25-51 (89)
54 1vp7_A Exodeoxyribonuclease VI 30.0 79 0.0027 25.2 5.0 32 10-41 8-39 (100)
55 3iv1_A Tumor susceptibility ge 28.7 1.9E+02 0.0066 21.9 10.6 16 56-71 10-25 (78)
56 2p2u_A HOST-nuclease inhibitor 28.3 2.8E+02 0.0095 23.6 9.7 23 26-48 10-32 (171)
57 2e7s_A RAB guanine nucleotide 28.3 2E+02 0.0069 24.0 7.5 16 103-118 68-83 (135)
58 3tnu_B Keratin, type II cytosk 26.9 2.5E+02 0.0085 22.6 13.8 19 48-66 38-56 (129)
59 3cve_A Homer protein homolog 1 26.7 2E+02 0.0068 21.5 10.6 59 57-125 4-62 (72)
60 2jee_A YIIU; FTSZ, septum, coi 26.7 2.1E+02 0.0073 21.8 9.8 18 53-70 6-23 (81)
61 1m1j_C Fibrinogen gamma chain; 26.0 3.7E+02 0.013 26.3 10.2 8 170-177 164-171 (409)
62 2d4y_A HAP1, flagellar HOOK-as 25.5 4.3E+02 0.015 25.6 10.8 12 107-118 134-145 (463)
63 2p22_C Protein SRN2; endosome, 25.4 3.4E+02 0.012 23.7 11.2 40 79-118 81-120 (192)
64 3haj_A Human pacsin2 F-BAR; pa 25.1 4.9E+02 0.017 25.4 16.6 24 29-52 81-104 (486)
65 1f5n_A Interferon-induced guan 24.6 5.7E+02 0.02 26.1 14.2 18 31-48 458-475 (592)
66 2v4h_A NF-kappa-B essential mo 24.5 2.8E+02 0.0095 22.4 11.9 35 78-112 25-59 (110)
67 1wle_A Seryl-tRNA synthetase; 24.0 4.8E+02 0.016 26.1 10.8 15 319-333 354-368 (501)
68 3f1i_H Hepatocyte growth facto 23.8 2.7E+02 0.0093 22.0 9.6 16 46-61 34-49 (98)
69 4ad8_A DNA repair protein RECN 23.2 5.3E+02 0.018 25.2 17.0 37 31-67 185-221 (517)
70 1nfn_A Apolipoprotein E3; lipi 23.0 3.7E+02 0.013 23.2 11.4 45 30-74 25-72 (191)
71 2wvr_A Geminin; DNA replicatio 22.7 4.1E+02 0.014 23.7 9.5 23 46-68 108-130 (209)
72 3swf_A CGMP-gated cation chann 22.1 2.5E+02 0.0087 21.1 6.6 15 104-118 27-41 (74)
73 3qne_A Seryl-tRNA synthetase, 22.0 3E+02 0.01 27.6 8.9 21 314-334 314-334 (485)
74 3lay_A Zinc resistance-associa 21.0 2E+02 0.0069 24.9 6.4 81 91-177 67-147 (175)
75 2hy6_A General control protein 20.8 1.1E+02 0.0038 19.6 3.4 13 57-69 5-17 (34)
76 2fxo_A Myosin heavy chain, car 20.6 3.4E+02 0.012 21.9 17.2 21 48-68 36-56 (129)
77 1x79_B RAB GTPase binding effe 20.4 3.4E+02 0.012 21.9 11.8 8 162-169 86-93 (112)
78 2fzt_A Hypothetical protein TM 20.3 2.8E+02 0.0097 20.9 9.4 26 103-128 52-77 (79)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=98.84 E-value=1e-08 Score=93.61 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=78.9
Q ss_pred ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCCCCCCCCcccc
Q 018759 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (351)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (351)
.=||.|+.|.-.+....+| .+|+||+|++|.|+..||.+|++.+ +|.+.|+||.|+|.+...
T Consensus 42 fgtINglRLGrlp~~~V~W-------~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~---------- 104 (210)
T 4ddp_A 42 FGTINNFRLGRLPSVPVEW-------NEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD---------- 104 (210)
T ss_dssp EEEETTEECCCBTTBCCCH-------HHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred ceeEcccccCCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence 4489999998765322221 3599999999999999999999999 799999999999987632
Q ss_pred cccccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHHhc
Q 018759 288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKGTFNLRNRI 330 (351)
Q Consensus 288 ~~~~~~~~~~r~fPLf~~~~~----~~rF~yaV~LLNknI~qL~~~~ 330 (351)
....||||..|.- ..+|+-|+--+-.-+.|++...
T Consensus 105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~ 143 (210)
T 4ddp_A 105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV 143 (210)
T ss_dssp --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence 2358999987653 3599999999999999998766
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.4e-08 Score=89.35 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCC-CCCCCCccc
Q 018759 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS 286 (351)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~-~~~~ss~~~ 286 (351)
.=||.|+.|.-.+....+| .+|+||+|++|.|++.||..|++.+ .|.|.|+||.|+|.+..- ..+-..+
T Consensus 16 fgTINglRLGrl~~~~V~W-------~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~~~~-- 86 (220)
T 3vp7_A 16 FATINGLRLGSIPESVVPW-------KEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEYNNS-- 86 (220)
T ss_dssp EEEETTEEECCBTTBCCCH-------HHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred ceeEcccccCCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeeccccccccccc--
Confidence 4489999998765222222 3599999999999999999999999 599999999999998431 1000000
Q ss_pred ccccccCCCCCcccCCccCCC--------chhhHHHHHHHHHHHHHHHHHh
Q 018759 287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKGTFNLRNR 329 (351)
Q Consensus 287 ~~~~~~~~~~~r~fPLf~~~~--------~~~rF~yaV~LLNknI~qL~~~ 329 (351)
+. ........||||..+. -+.+|+-|+--+=.-+.|+...
T Consensus 87 ~~---~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~ 134 (220)
T 3vp7_A 87 TT---NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ 134 (220)
T ss_dssp ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cc---ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence 00 0011346899999874 1359999999998888888874
No 3
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.04 E-value=13 Score=30.34 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCCCCcccCCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 018759 13 HPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLL 92 (351)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~ 92 (351)
|..|..-..-++.+.-++..+|... |.....+|.+-....+.|+.+|.. ..+. ...++.++.+++.-+.-
T Consensus 8 ~~~~~~~~~~~~~~~~~ei~~L~~~---L~~AEeaL~~Kq~~idelk~ei~q----~~~~---lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 8 HHHSSGLVPRGSHMASMQLEDLRQQ---LQQAEEALVAKQELIDKLKEEAEQ----HKIV---METVPVLKAQADIYKAD 77 (110)
T ss_dssp -----CCCCTTCCSSCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HTHHHHHHHHHHHHHHH
T ss_pred cccccCCCcchhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH
Confidence 3334444444555555666666555 455566666666666666665544 2222 23456666655533333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 93 ~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
-. ..+..++.+...+++|..+++.|....
T Consensus 78 F~----aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 78 FQ----AERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc----cchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 255566667777777877777665543
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.64 E-value=15 Score=45.19 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhHHHhhcccc-cchHHHHHHHHHHHHHHHHHHh
Q 018759 126 TALSVARKRLQESNRLLAGEKG-YGHLQKLQKMLRMRQQFMISQV 169 (351)
Q Consensus 126 ~~l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~~L~~rR~~lv~qL 169 (351)
..+..++.+|.-|..++.+-.+ +.|=......+......++++.
T Consensus 2063 ~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2063 TESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 4455677777777776553221 2333333455666666666664
No 5
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.61 E-value=21 Score=30.76 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759 35 DQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (351)
Q Consensus 35 ~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL 114 (351)
=+++-+-.+|++.|..+.........+|..+-..+...-....++......+. .+.......+..+..+++.+..+
T Consensus 9 I~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~----~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 9 IESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVK----RLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888888776666666544433222111122223223332 22233344666677788888888
Q ss_pred HHHHHHHHHHh
Q 018759 115 SMEVRSLLVAG 125 (351)
Q Consensus 115 ~~~ir~l~~~~ 125 (351)
...+..|....
T Consensus 85 e~ElEeLTasL 95 (154)
T 2ocy_A 85 NKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766554
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.49 E-value=26 Score=31.87 Aligned_cols=14 Identities=0% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q 018759 156 KMLRMRQQFMISQV 169 (351)
Q Consensus 156 ~~L~~rR~~lv~qL 169 (351)
..+...|..+...+
T Consensus 160 ~~l~~~r~~l~~~i 173 (256)
T 3na7_A 160 QIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 34455565555543
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.34 E-value=25 Score=43.41 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=9.3
Q ss_pred CCcccCCccCCC
Q 018759 296 KPAEFPLFLEGQ 307 (351)
Q Consensus 296 ~~r~fPLf~~~~ 307 (351)
..+.|||..|.+
T Consensus 2182 ~~~R~PLlIDPq 2193 (3245)
T 3vkg_A 2182 RFNRYPLVIDPS 2193 (3245)
T ss_dssp SCSSCEEEECTT
T ss_pred cCCCceEEEChH
Confidence 457899999865
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.00 E-value=6 Score=44.05 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018759 55 KQTLQQKL 62 (351)
Q Consensus 55 ~~~L~~qI 62 (351)
...|+.++
T Consensus 887 l~~Le~e~ 894 (1184)
T 1i84_S 887 HTQLCEEK 894 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.62 E-value=14 Score=28.22 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759 57 TLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (351)
Q Consensus 57 ~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl 86 (351)
...++++.+|..+.+.+.++|++...+..|
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DL 35 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDL 35 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988888888887765554
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.75 E-value=20 Score=29.54 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
..|-.+..+.+.|..+++.+....+. .+.+++.++......++. .+..+..+.--.+.|+.....+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~------~v~ql~~~i~~Le~eL~e----~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQR------VVLQLKGHVSELEADLAE----QQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666677777788888877665432 345555555443333333 44455555566677777777665555
Q ss_pred hHHHHHHHHHHHh
Q 018759 126 TALSVARKRLQES 138 (351)
Q Consensus 126 ~~l~~a~~~L~ea 138 (351)
..-..++..+.++
T Consensus 85 ~~~~~~q~~~~e~ 97 (120)
T 3i00_A 85 EDTEKAQRSLSEI 97 (120)
T ss_dssp C------------
T ss_pred hhhHHHHHHHHHH
Confidence 5445566566554
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.67 E-value=11 Score=38.49 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018759 75 RSNELE-EMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (351)
Q Consensus 75 ~~~~l~-~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~ree 113 (351)
..+++. +++.+++.++..++..+.+++.|+..|+.++.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 666666666666666555555555555444433
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.53 E-value=34 Score=37.89 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 123 (351)
Q Consensus 77 ~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~ 123 (351)
+.+..++++++..+..+.+..+..+.+.+....-.++|+.++..|..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~ 1030 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333333333444444433333
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.43 E-value=33 Score=30.40 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred CCCcceeehhh-hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHHHHH
Q 018759 23 PENVKVIEWED-YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES--------LKRSNELEEMRERLEARRLLM 93 (351)
Q Consensus 23 ~~~~~~~~~~~-~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~--------l~~~~~l~~~~~rl~~~~~~~ 93 (351)
+....+--|.. +.....++..|..-+.+=......|+..++.=|+....- .+...+++.++.+++......
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566755 223344555667777777777777777777766653321 122334555555555444443
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018759 94 EKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 129 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~ 129 (351)
...+...++-...+...++.|...|+.|..+..+|.
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333444444445555566666666655555544444
No 14
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.11 E-value=25 Score=28.72 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=40.9
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018759 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k 109 (351)
+|+-++..+..| ..-+..+...+..|+..++..-+. .+..+.++.++++.....+..+....-..+.++..
T Consensus 7 ~~~~lq~~~~ql---~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 7 QVKKLQLMLRQA---NDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887443 556666666666666664443333 34567777777766666555444333333333333
Q ss_pred H
Q 018759 110 Q 110 (351)
Q Consensus 110 ~ 110 (351)
+
T Consensus 78 q 78 (112)
T 1x79_B 78 Q 78 (112)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.22 E-value=22 Score=34.88 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018759 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (351)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~re 112 (351)
++++.++..++..+..-+..++.|+..|++++-
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ 148 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455556666666665555555555555544433
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.73 E-value=65 Score=35.63 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQK 61 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~q 61 (351)
|+.-|.+....+..|+.+
T Consensus 933 Lq~rL~~~e~~n~~L~~~ 950 (1080)
T 2dfs_A 933 LQRKIDEQNKEYKSLLEK 950 (1080)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=77.54 E-value=16 Score=27.98 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 100 SKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 100 ~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
...++.+++.--+.|--+|-.|..-
T Consensus 43 q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 43 RERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444433
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.71 E-value=72 Score=30.96 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 018759 50 QADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM 98 (351)
Q Consensus 50 da~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~ 98 (351)
+..+..+.++.+|+.+|+......+..+-...++++|...++-..+..+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 4455667777888888877654433334444455555444444433333
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.50 E-value=69 Score=29.01 Aligned_cols=7 Identities=14% Similarity=-0.121 Sum_probs=3.3
Q ss_pred eceecCC
Q 018759 213 LGLHLTI 219 (351)
Q Consensus 213 ~Gl~LP~ 219 (351)
|++.||.
T Consensus 204 C~~~lpp 210 (256)
T 3na7_A 204 CFIRLND 210 (256)
T ss_dssp TCCBCCH
T ss_pred CCeeeCH
Confidence 4455544
No 20
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.28 E-value=45 Score=26.37 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018759 100 SKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (351)
Q Consensus 100 ~~~~~~~~~k~reeL~~~ir~l~~~~~~l 128 (351)
.+..++.+...+++|...++.+......|
T Consensus 59 ERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 59 ERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777777776666554433
No 21
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=66.42 E-value=1e+02 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhccceeeC
Q 018759 155 QKMLRMRQQFMISQVSFLYPVKILV 179 (351)
Q Consensus 155 ~~~L~~rR~~lv~qL~~IyPI~~~~ 179 (351)
-..|.-+|-.++.||+.+.+|+.+.
T Consensus 131 ~ndLlDqRD~ll~eLS~~v~v~v~~ 155 (463)
T 2d4y_A 131 PNDLLDQRDQLVSELNKIVGVEVSV 155 (463)
T ss_dssp -CHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred chHhHHHHHHHHHHHHhhcCeEEEE
Confidence 3467888999999999999999874
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.39 E-value=56 Score=33.34 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNEL-EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l-~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
..=+|..-..++|.++++++-+.+.+.-+..+.+ +.++.++.... +.........++++++...|+.+|......
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~----dNdNtynE~S~ELRRrIqyLKekVdnQlsn 132 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN----NRDNTYNRVSEDLRSRIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH----HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666633333222222222 22222222221 112223333446666666666666554444
Q ss_pred hhHHH
Q 018759 125 GTALS 129 (351)
Q Consensus 125 ~~~l~ 129 (351)
.++|+
T Consensus 133 IrvLQ 137 (562)
T 3ghg_A 133 IQLLQ 137 (562)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.01 E-value=62 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~~~ 70 (351)
..+-+.+..++.++.+...+.+.-.
T Consensus 28 ~~l~~rL~~Rd~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 28 DLLIRRLTDRNDKEAHLNELFQDNS 52 (152)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3367778888888888888887643
No 24
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=63.70 E-value=1.7e+02 Score=31.66 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=0.0
Q ss_pred hHHHHHHhHhhHH
Q 018759 232 KEVQRSATALGYI 244 (351)
Q Consensus 232 ~~~e~isaALGyv 244 (351)
.++.-.++|-|.+
T Consensus 837 sPinLf~ta~gl~ 849 (861)
T 2zuo_A 837 SPINLFSTAFGLL 849 (861)
T ss_dssp -------------
T ss_pred ChHHHHHHhhHhh
Confidence 3444445555544
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.52 E-value=39 Score=37.56 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~l 65 (351)
...+.........++.+++.+
T Consensus 870 ~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 870 KERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444
No 26
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.72 E-value=53 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.9
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.+++.+.++..|..-++.....+..++.+++.+-...
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888888888777665554
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.08 E-value=59 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=16.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
|..|..=|++|..+..-|+-+|+++=+.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666655555555444
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.33 E-value=73 Score=25.83 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Q 018759 105 EDAKNQEERLSMEVRSLLVAGTAL 128 (351)
Q Consensus 105 ~~~~k~reeL~~~ir~l~~~~~~l 128 (351)
..+...++.|...+|.|..+..+|
T Consensus 45 ~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 45 SQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHH
Confidence 334444444444444444443333
No 29
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=58.06 E-value=65 Score=25.16 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=27.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
+++..+.++..|..-++.....+..++.+++.+-...
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777778888888888888877777665544
No 30
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.77 E-value=1.6e+02 Score=29.53 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=3.1
Q ss_pred hhcccee
Q 018759 171 FLYPVKI 177 (351)
Q Consensus 171 ~IyPI~~ 177 (351)
-+|-|.|
T Consensus 228 GvY~I~p 234 (464)
T 1m1j_B 228 EMYIIQP 234 (464)
T ss_dssp EEEEECS
T ss_pred eeEEEEe
Confidence 3444443
No 31
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=57.07 E-value=97 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018759 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (351)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~re 112 (351)
++++.++..++..++.-+.+++.|+..++.++-
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555555555544433
No 32
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=56.84 E-value=56 Score=27.86 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=39.3
Q ss_pred CcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018759 25 NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQ-------QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97 (351)
Q Consensus 25 ~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~-------~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~ 97 (351)
+|+.=+|+++.....||.|...-...+......|. ..|...+..-.........+..+.++++.....++++.
T Consensus 28 ~l~~gE~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~ 107 (175)
T 4abx_A 28 SPDPGEEEGLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIA 107 (175)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 34556889998888888886655444443333332 23333333222111222345555555555555555444
Q ss_pred hhhHH
Q 018759 98 MRSKV 102 (351)
Q Consensus 98 ~~~~~ 102 (351)
...+.
T Consensus 108 ~~L~~ 112 (175)
T 4abx_A 108 GELRD 112 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 33
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=56.70 E-value=1.2e+02 Score=27.74 Aligned_cols=53 Identities=13% Similarity=0.407 Sum_probs=39.1
Q ss_pred ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (351)
Q Consensus 30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl 86 (351)
.+++++..|-.+-|...+|+.....+++|..+|..+-.. ++ ....+..+++.|
T Consensus 88 ~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k--~P--~s~kl~~LeqEL 140 (234)
T 3plt_A 88 KYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYK--DP--QSTKIPVLEQEL 140 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--CC--CCchHHHHHHHH
Confidence 577888889899999999999999999999999875433 23 223455555544
No 34
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.42 E-value=66 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~l 65 (351)
+.-||++...+..|+.+|..+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555555554443
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.64 E-value=1.8e+02 Score=28.47 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018759 49 SQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (351)
Q Consensus 49 qda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l 128 (351)
++..-..+.|...+..+-+...+.-+...++.++ +.-..+...+.-...-...++++++..-|+..|+.-....+.|
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~---lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL---MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5666666666666666666555443333333222 2222223333333455556677777777777776544444444
Q ss_pred H
Q 018759 129 S 129 (351)
Q Consensus 129 ~ 129 (351)
+
T Consensus 140 q 140 (390)
T 1deq_A 140 Q 140 (390)
T ss_pred H
Confidence 4
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.14 E-value=99 Score=25.18 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 44 LSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 44 L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
|...+......+..|+.+...+++..
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~Ek 50 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQEK 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 37
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.75 E-value=89 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
.+-+|+++++.=...++.+..+++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~v 36 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAI 36 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888887777777777776443
No 38
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.58 E-value=1.8e+02 Score=25.95 Aligned_cols=32 Identities=3% Similarity=0.005 Sum_probs=17.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (351)
Q Consensus 41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~ 72 (351)
...+...+..+..+.+.|+..++.+.++..+.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666665554444
No 39
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=43.56 E-value=1.5e+02 Score=25.09 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=18.5
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
+++.+.+.|......+.+=...+..|...++..+..
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~ 111 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQN 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444443
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.71 E-value=1.6e+02 Score=25.16 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018759 102 VEKEDAKNQEERLSMEV 118 (351)
Q Consensus 102 ~~~~~~~k~reeL~~~i 118 (351)
..+..+...-|+|-+++
T Consensus 79 ~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASL 95 (154)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555555
No 41
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=42.51 E-value=41 Score=26.41 Aligned_cols=46 Identities=11% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRE 84 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~ 84 (351)
|.|+.++.-|.+++.....++..|+.+|+....---..+.++...+
T Consensus 2 ~nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~~~lEsiAA 47 (95)
T 3k4t_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAA 47 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Confidence 5688889999999999999999999999987533223344444433
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.29 E-value=1.3e+02 Score=23.88 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 105 EDAKNQEERLSMEVRS 120 (351)
Q Consensus 105 ~~~~k~reeL~~~ir~ 120 (351)
..+.+.+..+...+..
T Consensus 43 ~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 43 TKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334443333
No 43
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=42.18 E-value=1.2e+02 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=14.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
||++--+=+..+...+..|+.+|+.+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556666666666544
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.25 E-value=1.5e+02 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 86 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
.......+..+.+..++.+.+..++.++|+.+|..|....
T Consensus 48 AaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 48 AATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444556666776666655543
No 45
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=40.81 E-value=69 Score=29.78 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=5.4
Q ss_pred HHHHHHHHhHHHh
Q 018759 130 VARKRLQESNRLL 142 (351)
Q Consensus 130 ~a~~~L~ea~~~L 142 (351)
.++..+..++..+
T Consensus 140 ~~~~~l~~a~~~l 152 (369)
T 4dk0_A 140 QAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 46
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.26 E-value=1.3e+02 Score=22.98 Aligned_cols=21 Identities=10% Similarity=0.404 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 45 SSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 45 ~~~iqda~~~~~~L~~qI~~l 65 (351)
+..||++...+..|+.+|..+
T Consensus 12 ~~klq~~E~rN~~Le~~v~~l 32 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAM 32 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 445566666666666655544
No 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.33 E-value=65 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 100 SKVEKEDAKNQEERLSMEVRSLLVA 124 (351)
Q Consensus 100 ~~~~~~~~~k~reeL~~~ir~l~~~ 124 (351)
.+..+..+++.+..+...+..|..+
T Consensus 58 E~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 58 ENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp TTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666676666655544
No 48
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.15 E-value=67 Score=26.52 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (351)
Q Consensus 39 ~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~ 71 (351)
|.|+.+..-|.+++.....|...|.++|+....
T Consensus 2 ~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567888888999999999999999999998754
No 49
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=36.68 E-value=2e+02 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=18.1
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
.|=+.||.|.. +.+++++.-..+...+.|++--+.
T Consensus 8 lLlG~l~~l~G-~~Sl~qL~nrla~~~am~~sqqq~ 42 (158)
T 3tul_A 8 LLLGKLMTLLG-DVSLSQLESRLAVWQAMIESQKEM 42 (158)
T ss_dssp HHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555533 345555555555555555554443
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.36 E-value=1.7e+02 Score=22.91 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018759 111 EERLSMEV 118 (351)
Q Consensus 111 reeL~~~i 118 (351)
.+.|....
T Consensus 64 ee~L~ea~ 71 (101)
T 3u1c_A 64 LEELHKSE 71 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.73 E-value=2.1e+02 Score=23.23 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe 67 (351)
|.+...+...|+.+|+++..
T Consensus 40 i~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555554433
No 52
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.02 E-value=1.9e+02 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (351)
Q Consensus 40 rL~~L~~~iqda~~~~~~L~~qI~~l 65 (351)
+|++|+++++--..+++.|..|-..+
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL 30 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQL 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 67888999998888888887775443
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.94 E-value=1.8e+02 Score=22.19 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (351)
Q Consensus 43 ~L~~~iqda~~~~~~L~~qI~~lLe~~ 69 (351)
.|...+......+..|+.+...+++..
T Consensus 25 ~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 25 KMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554
No 54
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=30.00 E-value=79 Score=25.16 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=11.2
Q ss_pred hccCCCCCcccCCCCCcceeehhhhHHHHHHH
Q 018759 10 HLQHPTSTSKAIDPENVKVIEWEDYDQELARL 41 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~rL 41 (351)
|-.|-...||.+.+.+.+-..=..|+.++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~sFEeal~eL 39 (100)
T 1vp7_A 8 HHHHHMASSKQADPQTDARPLPQDFETALAEL 39 (100)
T ss_dssp -----------------CCCBCCSHHHHHHHH
T ss_pred hhHhhhhhcccCCCCcccCCCCCCHHHHHHHH
Confidence 44556667888888877777666788888766
No 55
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.68 E-value=1.9e+02 Score=21.92 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 56 QTLQQKLQSLIQVKAE 71 (351)
Q Consensus 56 ~~L~~qI~~lLe~~~~ 71 (351)
++|..++.+.+...+.
T Consensus 10 DKLRrrl~E~~~q~qa 25 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQA 25 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4566666666666543
No 56
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.33 E-value=2.8e+02 Score=23.64 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=16.9
Q ss_pred cceeehhhhHHHHHHHhcHHHHH
Q 018759 26 VKVIEWEDYDQELARLWSLSSAL 48 (351)
Q Consensus 26 ~~~~~~~~~~~~L~rL~~L~~~i 48 (351)
+.+-+|++...+|++|..+...+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~ 32 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKV 32 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999997765444433
No 57
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.31 E-value=2e+02 Score=24.01 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 103 EKEDAKNQEERLSMEV 118 (351)
Q Consensus 103 ~~~~~~k~reeL~~~i 118 (351)
.+..+...-|+|-+++
T Consensus 68 ~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 68 EADKLNKEVEDLTASL 83 (135)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555556666665
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.86 E-value=2.5e+02 Score=22.62 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLI 66 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lL 66 (351)
|.+...+...|+.+|+++.
T Consensus 38 i~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444455544443
No 59
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.74 E-value=2e+02 Score=21.47 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759 57 TLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (351)
Q Consensus 57 ~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~ 125 (351)
.+.+++.++-..+ .+++++|...+..++.-......++.+++.--+.|--+|-.|..-.
T Consensus 4 ~~~~kLq~~E~~N----------~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 4 NSHMKLQEVEIRN----------KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4455555554444 2345555555555555555555555666666666666665554443
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.73 E-value=2.1e+02 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018759 53 DKKQTLQQKLQSLIQVKA 70 (351)
Q Consensus 53 ~~~~~L~~qI~~lLe~~~ 70 (351)
+--++|+.+|+.+++.-.
T Consensus 6 ElleqLE~KIq~avdtI~ 23 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTIT 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345778888888888653
No 61
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.96 E-value=3.7e+02 Score=26.33 Aligned_cols=8 Identities=50% Similarity=0.364 Sum_probs=4.7
Q ss_pred hhhcccee
Q 018759 170 SFLYPVKI 177 (351)
Q Consensus 170 ~~IyPI~~ 177 (351)
.-||.|.|
T Consensus 164 SGvY~I~p 171 (409)
T 1m1j_C 164 SGLYFIKP 171 (409)
T ss_dssp CEEEEECC
T ss_pred CeeEEEec
Confidence 34666665
No 62
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=25.52 E-value=4.3e+02 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018759 107 AKNQEERLSMEV 118 (351)
Q Consensus 107 ~~k~reeL~~~i 118 (351)
+..+|++|-.++
T Consensus 134 LlDqRD~ll~eL 145 (463)
T 2d4y_A 134 LLDQRDQLVSEL 145 (463)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333444444433
No 63
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.39 E-value=3.4e+02 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759 79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (351)
Q Consensus 79 l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i 118 (351)
+.+++.+++..+..+.......+.+..+..++..++.+.+
T Consensus 81 ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~l 120 (192)
T 2p22_C 81 LEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEF 120 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666677777777777766666555
No 64
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.06 E-value=4.9e+02 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.7
Q ss_pred eehhhhHHHHHHHhcHHHHHHHHH
Q 018759 29 IEWEDYDQELARLWSLSSALSQAD 52 (351)
Q Consensus 29 ~~~~~~~~~L~rL~~L~~~iqda~ 52 (351)
-.|..+.+++.+++.....+.+.+
T Consensus 81 ~aw~~~~~e~e~~a~~H~~~a~~L 104 (486)
T 3haj_A 81 KAWMAFMSEAERVSELHLEVKASL 104 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877776666555444
No 65
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.62 E-value=5.7e+02 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHhcHHHHH
Q 018759 31 WEDYDQELARLWSLSSAL 48 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~i 48 (351)
|+.|+.-|.....+.++|
T Consensus 458 ~~vl~~fl~~~~~~~~~i 475 (592)
T 1f5n_A 458 EEILQTYLKSKESMTDAI 475 (592)
T ss_dssp HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443334443
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.53 E-value=2.8e+02 Score=22.38 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018759 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (351)
Q Consensus 78 ~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~re 112 (351)
++.++..+|..+...+......++++++++.++++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544445555555544443
No 67
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.04 E-value=4.8e+02 Score=26.14 Aligned_cols=15 Identities=0% Similarity=-0.009 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcCCC
Q 018759 319 LNKGTFNLRNRINRS 333 (351)
Q Consensus 319 LNknI~qL~~~~Gl~ 333 (351)
+-..++.++...|++
T Consensus 354 ~l~~~~~il~~LgLp 368 (501)
T 1wle_A 354 FLSLQMEILTELGLH 368 (501)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCc
Confidence 345566666677765
No 68
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.81 E-value=2.7e+02 Score=21.98 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQK 61 (351)
Q Consensus 46 ~~iqda~~~~~~L~~q 61 (351)
+++|.+-.+.-.+-.+
T Consensus 34 ssVQsLF~~lt~MH~~ 49 (98)
T 3f1i_H 34 SAVLSLFQSINGMHPQ 49 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 69
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=23.20 E-value=5.3e+02 Score=25.18 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (351)
Q Consensus 31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe 67 (351)
|.+|+..+.++..+.....+.....+.++.|+.++-.
T Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 185 HAAWREAVSRLERLQASQRERARQIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555554444444555555555555443
No 70
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.97 E-value=3.7e+02 Score=23.22 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=25.7
Q ss_pred ehhhhHHHH-HHHhcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhh
Q 018759 30 EWEDYDQEL-ARLWSLSSALSQADDKK--QTLQQKLQSLIQVKAESLK 74 (351)
Q Consensus 30 ~~~~~~~~L-~rL~~L~~~iqda~~~~--~~L~~qI~~lLe~~~~~l~ 74 (351)
.|+.+...+ ..+.++.+...++.... ..|.++++.++....+.++
T Consensus 25 ~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~ 72 (191)
T 1nfn_A 25 RWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK 72 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 466666553 23334444455555555 5667777777777654433
No 71
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.67 E-value=4.1e+02 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018759 46 SALSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 46 ~~iqda~~~~~~L~~qI~~lLe~ 68 (351)
-||.+|+.++..|-.+|+.+=+.
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eE 130 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNE 130 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887764433
No 72
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=22.12 E-value=2.5e+02 Score=21.05 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 018759 104 KEDAKNQEERLSMEV 118 (351)
Q Consensus 104 ~~~~~k~reeL~~~i 118 (351)
..+.......|+++|
T Consensus 27 LaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 27 LAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 73
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.00 E-value=3e+02 Score=27.56 Aligned_cols=21 Identities=0% Similarity=-0.119 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 018759 314 YAVFLLNKGTFNLRNRINRSW 334 (351)
Q Consensus 314 yaV~LLNknI~qL~~~~Gl~~ 334 (351)
..+.-+-...+.++...|++.
T Consensus 314 ~e~e~ml~~~e~il~~LgLpy 334 (485)
T 3qne_A 314 EEFDRMIGCSEEFYQSLGLPY 334 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHCCCcE
Confidence 334445567777888889874
No 74
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.01 E-value=2e+02 Score=24.86 Aligned_cols=81 Identities=15% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHhh
Q 018759 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVS 170 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL~ 170 (351)
.++++.+++.+.+.++-.++..+|+.++.+......++-.+..-=..+-+.+..| +.+++.++...|-.+-.++.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~E-----i~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKE-----MESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccee
Q 018759 171 FLYPVKI 177 (351)
Q Consensus 171 ~IyPI~~ 177 (351)
.- .|.+
T Consensus 142 Ke-Gip~ 147 (175)
T 3lay_A 142 QA-GIPR 147 (175)
T ss_dssp HT-TCC-
T ss_pred Hh-CCCC
No 75
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.75 E-value=1.1e+02 Score=19.62 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 018759 57 TLQQKLQSLIQVK 69 (351)
Q Consensus 57 ~L~~qI~~lLe~~ 69 (351)
.|+.+++++|..+
T Consensus 5 QLEdkVEeLl~~~ 17 (34)
T 2hy6_A 5 QLADAVEELASAN 17 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 4555666666554
No 76
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.56 E-value=3.4e+02 Score=21.87 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018759 48 LSQADDKKQTLQQKLQSLIQV 68 (351)
Q Consensus 48 iqda~~~~~~L~~qI~~lLe~ 68 (351)
.++...+...|..+.+.+...
T Consensus 36 r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 77
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.44 E-value=3.4e+02 Score=21.88 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=2.8
Q ss_pred HHHHHHHh
Q 018759 162 QQFMISQV 169 (351)
Q Consensus 162 R~~lv~qL 169 (351)
|.+++.+|
T Consensus 86 Re~V~~eL 93 (112)
T 1x79_B 86 REQVSEEL 93 (112)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHHH
Confidence 33344443
No 78
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=20.30 E-value=2.8e+02 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018759 103 EKEDAKNQEERLSMEVRSLLVAGTAL 128 (351)
Q Consensus 103 ~~~~~~k~reeL~~~ir~l~~~~~~l 128 (351)
..+-++++.++|.+....+..+.+++
T Consensus 52 R~~~Ik~~~~~L~q~a~~~rna~ssl 77 (79)
T 2fzt_A 52 RLEIIEKRKTALFQEINVIREARSSL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33556666667776666666665554
Done!