BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018760
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH + FL KI++
Sbjct: 20 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS 79
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
S DY+VTA S L I+TAGARQ GE FK IIP +VKYSP C LLIV+NP
Sbjct: 80 SKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 139
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+ +++GEHGDSSV
Sbjct: 140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 199
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + S + +KE + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HP+S + KG YGI DVFLS+P LG+ G+ V + L +E RL+
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKK 318
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 319 SADTLWGIQKEL 330
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 340 bits (871), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH + FL KI++
Sbjct: 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS 78
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
S DY+VTA S L I+TAGARQ GE FK IIP +VKYSP C LLIV+NP
Sbjct: 79 SKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+ +++GEHGDSSV
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + S + +KE + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HP+S + KG YGI DVFLS+P LG+ G+ V + L +E RL+
Sbjct: 259 AESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKK 317
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 318 SADTLWGIQKEL 329
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 216/312 (69%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH + FL KI++
Sbjct: 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
DY+VTA S L I+TAGARQ GE FK IIP +VKYSP C LL+V+NP
Sbjct: 79 GKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+A +I+GEHGDSSV
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + + + +KE + +HK+VVDSAYEVI LKGYT+WAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HP+S + KG YGI DVFLS+P LG+ G+ V + L EE L+
Sbjct: 259 AESIMKNLRRVHPISTMLKGLYGIK-EDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKK 317
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 318 SADTLWGIQKEL 329
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 215/312 (68%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH + FL KI++
Sbjct: 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
DY VTA S L I+TAGARQ GE FK IIP +VKYSP+C LLIV+NP
Sbjct: 79 GKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+ +++GEHGDSSV
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + + +KE + +HK+VV+SAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HPVS + KG YGI DVFLS+P LG+ G+ + + L EE RL+
Sbjct: 259 AESIMKNLRRVHPVSTMIKGLYGIK-DDVFLSVPCILGQNGISDLVKVTLTSEEEARLKK 317
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 318 SADTLWGIQKEL 329
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 215/312 (68%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH + FL KI++
Sbjct: 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
DY VTA S L I+TAGARQ GE FK IIP +VKYSP+C LLIV+NP
Sbjct: 79 GKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+ +++GEHGDSSV
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + + +KE + +HK+VV+SAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HPVS + KG YGI DVFLS+P LG+ G+ + + L EE RL+
Sbjct: 259 AESIMKNLRRVHPVSTMIKGLYGIK-DDVFLSVPCILGQNGISDLVKVTLTSEEEARLKK 317
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 318 SADTLWGIQKEL 329
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/312 (52%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
H KI+V+G G VGMA A +IL ++ +E+ALVD DKL+GEM+DLQH + FL KI++
Sbjct: 20 HNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 79
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
DY VTA S L ++TAGARQ GE FK IIP +VKYSP+C LL+V+NP
Sbjct: 80 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 139
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+ +I+GEHGDSSV
Sbjct: 140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 199
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
+WS ++V GV + + + +KE +++HKEVVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLKGYTSWAIGLSVADL 259
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
A SI+++ R++HP+S + KG YGI +VFLS+P LG+ G+ V + L EE L+
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIK-ENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKK 318
Query: 337 SAKTILEVQSQL 348
SA T+ +Q +L
Sbjct: 319 SADTLWGIQKEL 330
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 327 bits (838), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 164/332 (49%), Positives = 219/332 (65%), Gaps = 4/332 (1%)
Query: 17 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
L + P+ A T + KI+V+G G VGMA A +IL + +ELALVD DKL+
Sbjct: 3 LKEKLIAPV---AEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59
Query: 77 GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
GEM+DLQH + FL KI+A DY+VTA S + +VTAG RQ GE FK
Sbjct: 60 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 119
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
IIP +VKYSPDCI+++V+NPVDILTYV WKLSGLP +RVIGSG NLDS+RFR+L+A+ L
Sbjct: 120 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 179
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
++ +I+GEHGDSSVA+WS ++V GV + + + E + +HK VV+SAY
Sbjct: 180 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 239
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
EVI LKGYT+WAIG S A+L S++++ +IHPVS + KG YGI+ +VFLSLP L
Sbjct: 240 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIE-NEVFLSLPCILNAR 298
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G+ V N L +E +L+ SA T+ ++Q L
Sbjct: 299 GLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 330
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 327 bits (838), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 164/332 (49%), Positives = 219/332 (65%), Gaps = 4/332 (1%)
Query: 17 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
L + P+ A T + KI+V+G G VGMA A +IL + +ELALVD DKL+
Sbjct: 3 LKEKLIAPV---AEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59
Query: 77 GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
GEM+DLQH + FL KI+A DY+VTA S + +VTAG RQ GE FK
Sbjct: 60 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 119
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
IIP +VKYSPDCI+++V+NPVDILTYV WKLSGLP +RVIGSG NLDS+RFR+L+A+ L
Sbjct: 120 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 179
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
++ +I+GEHGDSSVA+WS ++V GV + + + E + +HK VV+SAY
Sbjct: 180 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 239
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
EVI LKGYT+WAIG S A+L S++++ +IHPVS + KG YGI+ +VFLSLP L
Sbjct: 240 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIE-NEVFLSLPCILNAR 298
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G+ V N L +E +L+ SA T+ ++Q L
Sbjct: 299 GLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 330
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 324 bits (831), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/332 (49%), Positives = 218/332 (65%), Gaps = 4/332 (1%)
Query: 17 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
L + P+ P KI+V+G G VGMA A +IL + +ELALVD DKL+
Sbjct: 4 LKEKLIAPVAQQETTIP---DNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 77 GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
GEM+DLQH + FL KI+A+ DY+VTA S + +VTAG RQ GE FK
Sbjct: 61 GEMMDLQHGSLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
IIP +VKYSP+CI+++V+NPVDILTYVAWKLSGLP +RVIGSG NLDS+RFR+L+ + L
Sbjct: 121 IIPQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLG 180
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
V+ +I+GEHGDSSVA+WS ++V GV + + + E + +HK VV+SAY
Sbjct: 181 VHPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
EVI LKGYT+WAIG S A+L S++++ +IHPVS + +G YGI+ +VFLSLP L
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIE-NEVFLSLPCVLNAR 299
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G+ V N L +E +L+NSA T+ +Q L
Sbjct: 300 GLTSVINQKLKDDEVAQLKNSADTLWGIQKDL 331
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 220/326 (67%), Gaps = 4/326 (1%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
K I H A + + KI+V+G G VGMA A +IL +D +E+ALVD DKL+GEM+DL
Sbjct: 7 KLIGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDL 66
Query: 83 QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
QH + FL KI++ DY+V+AGS L ++TAGARQ GE FK IIP +V
Sbjct: 67 QHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
K+SPDCI+L+V+NPVD+LTYVAWKLSGLP +R+IGSG NLDS+RFR+L+ + L V++
Sbjct: 127 KHSPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSC 186
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
+++GEHGDS ++WS ++V + + + +K+ + +HK+VVDSAYEVI LK
Sbjct: 187 HGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK---DKQDWKKLHKDVVDSAYEVIKLK 243
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
GYTSWAIG S A+LA +I+++ ++HPVS + K FYGI +VFLSLP L G+ +
Sbjct: 244 GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLNDHGISNIV 302
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
+ L E +L+ SA T+ ++Q L
Sbjct: 303 KMKLKPNEEQQLQKSATTLWDIQKDL 328
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 220/326 (67%), Gaps = 4/326 (1%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
K I H A + + KI+V+G G VGMA A +IL +D +E+ALVD DKL+GEM+DL
Sbjct: 6 KLIGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDL 65
Query: 83 QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
QH + FL KI++ DY+V+AGS L ++TAGARQ GE FK IIP +V
Sbjct: 66 QHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 125
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
K+SPDCI+L+V+NPVD+LTYVAWKLSGLP +R+IGSG NLDS+RFR+L+ + L V++
Sbjct: 126 KHSPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSC 185
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
+++GEHGDS ++WS ++V + + + +K+ + +HK+VVDSAYEVI LK
Sbjct: 186 HGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK---DKQDWKKLHKDVVDSAYEVIKLK 242
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
GYTSWAIG S A+LA +I+++ ++HPVS + K FYGI +VFLSLP L G+ +
Sbjct: 243 GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLNDHGISNIV 301
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
+ L E +L+ SA T+ ++Q L
Sbjct: 302 KMKLKPNEEQQLQKSATTLWDIQKDL 327
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/326 (52%), Positives = 222/326 (68%), Gaps = 1/326 (0%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
K I H + P K++V+G G VGMA A +IL +D +ELALVD DKL+GE +DL
Sbjct: 6 KLITHVSKEEPAGPTNKVTVVGVGMVGMAAAISILLKDLTDELALVDVMEDKLKGEAMDL 65
Query: 83 QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
QH + FL KI+A DY+VTA S + +VTAGARQ GE FK IIP ++
Sbjct: 66 QHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNII 125
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
KYSP+CILL+V+NPVDILTYVAWKLSGLP NRVIGSGTNLDS+RFR L+ + L ++ +
Sbjct: 126 KYSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNC 185
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
+++GEHGDSSV +WS ++V GV + +KE +S+HK VVDSAYEVI LK
Sbjct: 186 HGWVIGEHGDSSVPVWSGVNVAGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK 245
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
GYTSWAIG SAA+L +SI+++ RK HPVS L KG +G++ +VFLS+P LG G+ V
Sbjct: 246 GYTSWAIGMSAADLCQSILKNLRKCHPVSTLVKGMHGVN-EEVFLSVPCILGNSGLTDVV 304
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
++ L +E +L SA+T+ VQ L
Sbjct: 305 HMTLKSDEEKQLVKSAETLWGVQKDL 330
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 317 bits (811), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 168/326 (51%), Positives = 223/326 (68%), Gaps = 2/326 (0%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
K I+H P +K++V+G G VGMA A +IL +D +ELA+VD DKL+GE++DL
Sbjct: 6 KLISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDL 65
Query: 83 QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
QH + FL +TKI+ DY+VTA S + +VTAGARQ GE FK IIP +V
Sbjct: 66 QHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIV 124
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
KYSP+CIL++V+NPVDILTYVAWKLSG P +RVIGSGTNLDS+RFR L+ + L ++
Sbjct: 125 KYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSC 184
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
A+IVGEHGDSSV +WS ++V GV + + + E ++IHKEVVD AYEVI LK
Sbjct: 185 HAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK 244
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
GYTSWAIG S A+L SII++ K+HPVS L +G +G+ +VFLS+P LG G+ V
Sbjct: 245 GYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQGMHGVK-DEVFLSVPCVLGNSGLTDVI 303
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
++ L EE +L+ SA+T+ VQ +L
Sbjct: 304 HMTLKAEEEKQLQKSAETLWGVQKEL 329
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 311 bits (796), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 150/318 (47%), Positives = 208/318 (65%), Gaps = 1/318 (0%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
P KI+V+G G+VGMA A +IL + +ELALVDA DKLRGE LDLQH + FL
Sbjct: 13 PEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLS 72
Query: 91 RTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCIL 150
KI+ DY V+A S L I+TAGAR ++G+ KAI+P +++ SPDC +
Sbjct: 73 TPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132
Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
++V NPVDILTYV WK+SG P RVIGSG NLDS+RFR+L+ + L VN +++GEH
Sbjct: 133 IVVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH 192
Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIG 270
GDSSV +WS ++V GV + S K+ +++HK+VV+ YEV+ +KGYTSWAIG
Sbjct: 193 GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIG 252
Query: 271 YSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEE 330
S +LARSI+++ +++HPV+ L KGF+GI +VFLS+P LG G+ +++ EE
Sbjct: 253 LSVTDLARSILKNLKRVHPVTTLVKGFHGIK-EEVFLSIPCVLGESGITDFVKVNMTAEE 311
Query: 331 SHRLRNSAKTILEVQSQL 348
L+ SA T+ +Q L
Sbjct: 312 EGLLKKSADTLWNMQKNL 329
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 198/344 (57%), Gaps = 40/344 (11%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
K I H A + + KI+V+G VGMA A ++L +D +E+ALVD DKL+GEM+DL
Sbjct: 7 KLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDL 66
Query: 83 QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
+H + FL KI++ DY+V+AGS L ++TAGARQ GE FK IIP +V
Sbjct: 67 EHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
K+SPDC+ + WKLSGLP +R+IGSG NLDS+RFR+L+ + L V++ V
Sbjct: 127 KHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLV 186
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
+++G+HGDS ++WS + +HK+VVDSAYEVI LK
Sbjct: 187 IGWVIGQHGDSVPSVWSGMWDA---------------------KLHKDVVDSAYEVIKLK 225
Query: 263 GYTSWAIGY-----------------SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV 305
GYTSWAIG S A+LA++I++D ++HPVS + K FYGI +V
Sbjct: 226 GYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIK-DNV 284
Query: 306 FLSLPAQLGRG-GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
FLSLP L G + + L +E +L+ SA T+ ++Q L
Sbjct: 285 FLSLPCVLNNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 191/317 (60%), Gaps = 3/317 (0%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
T + TK++VIG G VG +A + E+ L D +++ E+LD+QH ++F P
Sbjct: 4 TVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVS 63
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
I S D + +D+ ++TAG RQ G+ KAI+P LVK +P+ I +++
Sbjct: 64 IDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDI T+VA KL+GLP N++ GSGTNLDS+R RFL+A VN ++V AYI GEHGDS
Sbjct: 124 TNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDS 183
Query: 214 SVALWSSISVGGVPILSFLE-KQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V LW S ++GGVP+ + + + E IH+EV ++AY++I+ KG T++AIG S
Sbjct: 184 EVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMS 243
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
++ +++ D +I PVS + K F+GI D+ +S+P L R GV N ++ +E
Sbjct: 244 GVDIIEAVLHDTNRILPVSSMLKDFHGI--SDICMSVPTLLNRQGVNNTINTPVSDKELA 301
Query: 333 RLRNSAKTILEVQSQLG 349
L+ SA+T+ E +Q G
Sbjct: 302 ALKRSAETLKETAAQFG 318
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
K K+++IG G VG + A ++ Q +EL ++D +K G+++DL H AF P+
Sbjct: 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
+ Y +D+ + AGA Q GE FK I+ ++ D I L+
Sbjct: 62 KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDILTY WK SGLP RVIGSGT LDS+RFRF+L+++ Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHGDT 181
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ +WS +VGGVP+ +EK AY++E L+ I +V ++AY +I KG T + + S
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++I+ ++ I VS G YG D DV++ +PA + RGG+ G+T ++LN++E +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298
Query: 334 LRNSA---KTILE 343
+SA K IL+
Sbjct: 299 FLHSAGVLKNILK 311
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
K K+++IG G VG + A ++ Q +EL ++D +K G+++DL H AF P+
Sbjct: 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
+ Y +D+ + AGA Q GE FK I+ ++ D I L+
Sbjct: 62 KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDILTY WK SGLP RVIGSGT LDS+RFRF+L+++ Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDT 181
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ +WS +VGGVP+ +EK AY++E L+ I +V ++AY +I KG T + + S
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++I+ ++ I VS G YG D DV++ +PA + RGG+ G+T ++LN++E +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298
Query: 334 LRNSA---KTILE 343
+SA K IL+
Sbjct: 299 FLHSAGVLKNILK 311
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 184/312 (58%), Gaps = 4/312 (1%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
+ K+ +IG G VG + A +++ Q V+EL ++D +K+RG+++DL+HA + P T +
Sbjct: 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV 64
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +Y+ +DL ++ AGARQ GE FK+I+ ++ D I L+ N
Sbjct: 65 KAGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
PVDIL Y WK SGLP RVIGSGT LDS+RFR LL++ DV + V A I+GEHGD+ +
Sbjct: 125 PVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTEL 184
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
+WS ++ G P+ + LE++ K +E I + D+AY++I KG T + + A
Sbjct: 185 PVWSHANIAGQPLKTLLEQRPEG--KAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+ +I R++ + VS L +G Y + DV++ +PA + R G+ V I LN EE +
Sbjct: 243 ITEAIFRNEDAVLTVSALLEGEY--EEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA 300
Query: 336 NSAKTILEVQSQ 347
+SAKT+ ++ ++
Sbjct: 301 HSAKTLKDIMAE 312
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K H K+ ++G G VG + A ++ Q +E+ +VD DK +G+ +DL +A F KI
Sbjct: 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI 66
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
S +Y+ +DL ++TAGA Q GE K+I+ P+V + I L+ A
Sbjct: 67 Y-SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVDILTY WKLSG P NRV+GSGT+LD++RFR +A+ ++V+A+ V AYI+GEHGD+
Sbjct: 126 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTE 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
+WS ++GGV I ++ K +++ L + ++V D+AYE+I LKG T + I + A
Sbjct: 186 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALA 244
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
++++I+ D+ + P+SV G YG++ D+++ PA + R G+ + I L E +
Sbjct: 245 RISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESM 302
Query: 335 RNSAKTILEV 344
+ SA + +V
Sbjct: 303 QKSASQLKKV 312
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 183/312 (58%), Gaps = 4/312 (1%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
+ K+ +IG G VG + A +++ Q V+EL ++D +K+RG+++DL+HA + P T +
Sbjct: 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV 64
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +Y+ +DL ++ AGA Q GE FK+I+ ++ D I L+ N
Sbjct: 65 KAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
PVDIL Y WK SGLP RVIGSGT LDS+RFR LL++ DV + V A I+GEHGD+ +
Sbjct: 125 PVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTEL 184
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
+WS ++ G P+ + LE++ K +E I + D+AY++I KG T + + A
Sbjct: 185 PVWSHANIAGQPLKTLLEQRPEG--KAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+ +I R++ + VS L +G Y + DV++ +PA + R G+ V I LN EE +
Sbjct: 243 ITEAIFRNEDAVLTVSALLEGEY--EEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA 300
Query: 336 NSAKTILEVQSQ 347
+SAKT+ ++ ++
Sbjct: 301 HSAKTLKDIMAE 312
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K H K+ ++G G VG + A ++ Q +E+ +VD DK +G+ +DL +A F KI
Sbjct: 6 KDHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI 65
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
S +Y+ +DL ++TAGA + GE K+I+ P+V + I L+ A
Sbjct: 66 Y-SAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAA 124
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVDILTY WKLSG P NRV+GSGT+LD++RFR +A+ ++V+A+ V AYI+GEHGD+
Sbjct: 125 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTE 184
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
+WS ++GGV I ++ K +++ L + ++V D+AYE+I LKG T + I + A
Sbjct: 185 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALA 243
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
++++I+ D+ + P+SV G YGI+ D+++ PA + R G+ + I L E +
Sbjct: 244 RISKAILNDENAVLPLSVYMDGQYGIN--DLYIGTPAVINRNGIQNILEIPLTDHEEESM 301
Query: 335 RNSAKTILEV 344
+ SA + +V
Sbjct: 302 QKSASQLKKV 311
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K H K+ ++G G VG + A ++ Q +E+ +VD DK +G+ +DL+ A F KI
Sbjct: 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI 66
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
S +Y+ +DL ++TAGA Q GE K+I+ P+V + I L+ A
Sbjct: 67 Y-SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVDILTY WKLSG P NRV+GSGT+LD++RFR +A ++V+A+ V AYI+GEHGD+
Sbjct: 126 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTE 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
+WS ++GGV I ++ K +++ L + ++V + AYE+I LKG T + I + A
Sbjct: 186 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALA 244
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
++++I+ D+ + P+SV G YG++ D+++ PA + R G+ + I L E +
Sbjct: 245 RISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESM 302
Query: 335 RNSAKTILEV 344
+ SA + +V
Sbjct: 303 QKSASQLKKV 312
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
++ VIG G VG + ++ Q +E+ L+DA K G+ +D H F P+ +
Sbjct: 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
DY +DL ++ AGA Q GE F++I+ ++ + L+ NPVD
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
ILTY WK SGLP RVIGSGT LD++RFRFLL ++ V Q+V AYI+GEHGD+ + +W
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
S +G +PI +E + +K+ LE I V D+AY++I KG T + I A + R
Sbjct: 188 SQAYIGVMPIRKLVESKGEEAQKD-LERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ ++ I VS G YG DV++ +PA + R G+ V I LN +E +R +SA
Sbjct: 247 AILHNENAILTVSAYLDGLYG--ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 339 KTILEVQSQ 347
T+ V ++
Sbjct: 305 ATLKSVLAR 313
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
++ VIG G VG + ++ Q +E+ L+DA K G+ +D H F P+ +
Sbjct: 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
DY +DL ++ AGA Q GE F++I+ ++ + L+ NPVD
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
ILTY WK SGLP RVIGSGT LD++RFRFLL ++ V Q+V AYI+GEHGD+ + +W
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
S +G +PI +E + +K+ LE I V D+AY++I KG T + I A + R
Sbjct: 188 SQAYIGVMPIRKLVESKGEEAQKD-LERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ ++ I VS G YG DV++ +PA + R G+ V I LN +E +R +SA
Sbjct: 247 AILHNENAILTVSAYLDGLYG--ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 339 KTILEVQSQ 347
T+ V ++
Sbjct: 305 ATLKSVLAR 313
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 177/309 (57%), Gaps = 5/309 (1%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
H K+ ++G G VG + A + Q EE +VD D+ +G+ LDL+ A AF KI
Sbjct: 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY 63
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
S +Y+ +DL ++TAGA Q GE +I+ P+V D I L+ AN
Sbjct: 64 -SGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
PVDILTY WK SG P RVIGSGT+LDSSR R L +V+ + V AYI+GEHGDS
Sbjct: 123 PVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEF 182
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
A +S+ ++G P+ ++Q ++ + L + V + AY++I+LKG T + IG +
Sbjct: 183 AAYSTATIGTRPVRDVAKEQGVS--DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMR 240
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
++++I+RD+ + PV G YG++ D+++ PA +G G+ + L+ +E +++
Sbjct: 241 ISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKMQ 298
Query: 336 NSAKTILEV 344
+SA T+ +V
Sbjct: 299 DSAATLKKV 307
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 169/312 (54%), Gaps = 3/312 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
K+ ++G+G VG A A + E+ LVD + D+ HA F + A
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
Y G+ ++ AG Q GE F ++P +++ +P+ +LL+ NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
++T VA++LSGLP RV+GSGT LD++RFR LLA++L V Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
SS VGGVP+L F E + A E I + V +AY +I KG T + IG A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ D++ ++ VS G+ +V LSLP LG GGV G L+ EE LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVEGVL--EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSA 298
Query: 339 KTILEVQSQLGI 350
+ + E LG
Sbjct: 299 EILKEAAFALGF 310
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 169/312 (54%), Gaps = 3/312 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
K+ ++G+G VG A A + E+ LVD + D+ HA F + A
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
Y G+ ++ AG Q GE F ++P +++ +P+ +LL+ NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
++T VA++LSGLP RV+GSGT LD++RFR LLA++L V Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
SS VGGVP+L F E + A E I + V +AY +I KG T + IG A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ D++ ++ VS G+ +V LSLP LG GGV G L+ EE LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVEGVL--EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSA 298
Query: 339 KTILEVQSQLGI 350
+ + E LG
Sbjct: 299 EILKEAAFALGF 310
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 168/312 (53%), Gaps = 3/312 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
K+ ++G+G VG A A + E+ LVD + D+ HA F + A
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
Y G+ ++ AG Q GE F ++P +++ +P+ +LL+ NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
++T VA+ LSGLP RV+GSGT LD++RFR LLA++L V Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
SS VGGVP+L F E + A E I + V +AY +I KG T + IG A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ D++ ++ VS G+ +V LSLP LG GGV G L+ EE LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGVL--EVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSA 298
Query: 339 KTILEVQSQLGI 350
+ + E LG
Sbjct: 299 EILKEAAFALGF 310
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 176/314 (56%), Gaps = 3/314 (0%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K +K+++IG G VG + A T+ + EL L+D +K GE +D+ H F+ + +
Sbjct: 5 KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL 64
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
A DY+ D+ +VTAGA + GE K + ++KY ++L+V+
Sbjct: 65 YAG-DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVDI+TY+ K SGLP +VIGSGT LDS RFR+LL++ L V+ ++V YI+GEHGDS
Sbjct: 124 NPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQ 183
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
+ LWS + G I +++ + + +E + I ++V + +I KG T + I S
Sbjct: 184 LPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSIN 243
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
+ +++++Q I V + G YGI+ DV +SLP+ + GV V +L EE L
Sbjct: 244 TIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEAL 301
Query: 335 RNSAKTILEVQSQL 348
R SA+ + +V +++
Sbjct: 302 RFSAEQVKKVLNEV 315
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 158/280 (56%), Gaps = 4/280 (1%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
KI ++G G VG + A +L + F E+ L+D + G+ LDL H F R I A
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
DYA GSD+ IV AG Q GE K I + KY+PD I+++V NPVD
Sbjct: 61 DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+LTY K SG+ +V GSGT LD++R R L+A H + + V Y++GEHGDS V +W
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
S +GG+P+ + + Q + + LE+ ++ +AYE+I KG T +AI + A++
Sbjct: 181 SGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
SI D++++ +SV + + G+ D+ +S+P LG+ GV
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGV 277
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 156/287 (54%), Gaps = 3/287 (1%)
Query: 64 ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXX 123
E+ LVD + D+ HA F + A Y G+ ++ AG Q GE
Sbjct: 27 EVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG-SYGDLEGARAVVLAAGVAQRPGETR 85
Query: 124 XXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLD 183
F ++P +++ +P+ +LL+ NPVD+ T VA++LSGLP RV+GSGT LD
Sbjct: 86 LQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLSGLPPGRVVGSGTILD 145
Query: 184 SSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKET 243
++RFR LLA++L V Q V AY++GEHGDS V +WSS VGGVP+L F E + A E
Sbjct: 146 TARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPED 205
Query: 244 LESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGG 303
I + V +AY +I KG T + IG A L R+I+ D++ ++ VS G+
Sbjct: 206 RARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVL-- 263
Query: 304 DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
+V LSLP LG GGV G L+ EE LR SA+ + E LG
Sbjct: 264 EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF 310
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 175/302 (57%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
K++VIG GNVG +A+ + QD +E+ +VD K +G+ LD++ ++ T++ +
Sbjct: 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DY T SD+CI+TAG + G + V+ SPD +++VANP+
Sbjct: 62 NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D++TYVA++ SG P+NRV+G LD+ RFR +A+ LDV+ +DVQA ++G HGD+ V L
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT-SWAIGYSAANL 276
+VGG+P+ ++ +I E I + + E++ L G + +A G +AA +
Sbjct: 182 PRYTTVGGIPVPQLIDDARI-------EEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
+I++D ++I P + G YG+D D+F+ +P +LG GGV V + L+ +E +L+
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGLD--DLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKT 292
Query: 337 SA 338
SA
Sbjct: 293 SA 294
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 8/306 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI+VIG GNVG A I + EL L+D +G+ LD+ L TKI S
Sbjct: 2 KITVIGAGNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTKITGS 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DYA TA SD+ I+TAG + G K + ++K+S + I+++V+NP+
Sbjct: 62 NDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
DI+T+VAW SGLP RVIG LD++RFR +A L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
+V G+PI L + I E + E+V+ + G +A S +
Sbjct: 182 VKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ-----GSAFYAPASSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
SI+ D++++ P +V +G YGID F+ +P +LGR GV + I+L+Q + L+ S
Sbjct: 237 ESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKS 294
Query: 338 AKTILE 343
AK + E
Sbjct: 295 AKIVDE 300
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 165/306 (53%), Gaps = 8/306 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI+VIG GNVG A + + EL L+D +G+ LD+ + L TK+ S
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DYA TA SD+ I+TAG + G K + ++K+S + I+++V+NP+
Sbjct: 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
DI+T+VAW SGLP RVIG LD++RFR +A L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
+V G+PI L + I E + E+V+ + G +A S +
Sbjct: 182 VKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ-----GSAFYAPASSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
SI+ D++++ P +V +G YGID F+ +P +LGR GV + I+L+Q + L+ S
Sbjct: 237 ESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKS 294
Query: 338 AKTILE 343
AK + E
Sbjct: 295 AKIVDE 300
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 156/287 (54%), Gaps = 9/287 (3%)
Query: 64 ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXX 123
EL LVD D+ + E D+ HAA T++ ++ A + + I+TAGA Q GE
Sbjct: 27 ELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG-GHSELADAQVVILTAGANQKPGESR 85
Query: 124 XXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLD 183
F+ ++P + + +PD +LL+ +NPVD+LT +A +L+ P VIGSGT LD
Sbjct: 86 LDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLD 143
Query: 184 SSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKET 243
S+RFR L+A H V+ Y++GEHGDS V WSS V G+P+ F++ Q + + ++
Sbjct: 144 SARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQV 203
Query: 244 LESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGG 303
I + ++A +I K T + IG + A + +++RD+R + VS YG+
Sbjct: 204 RAKIDEGTRNAAASIIEGKRATYYGIGAALARITEAVLRDRRAVLTVSAPTP-EYGVS-- 260
Query: 304 DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
LSLP +GR GVL + L +E +L SA + + QLG+
Sbjct: 261 ---LSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQLGL 304
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 166/306 (54%), Gaps = 8/306 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI+VIG GNVG A + + EL L+D +G+ LD+ + L TK+ S
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DYA TA SD+ ++TAG + G + + ++++S + I+++V+NP+
Sbjct: 62 NDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
DI+T+VAW+ SGLP RVIG LDS+RFR +A L V+ QDV A ++G HGD+ V +
Sbjct: 122 DIMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
+V G+P+ + ++IA E + E+V+ + G ++ S +
Sbjct: 182 VKYTTVAGIPVADLISAERIAELVERTRTGGAEIVNHLKQ-----GSAFYSPATSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
SI+ D++++ +V G YGIDG F+ +P +LG+ GV + I L+Q + L+ S
Sbjct: 237 ESIVLDRKRVLTCAVSLDGQYGIDG--TFVGVPVKLGKNGVEHIYEIKLDQSDLDLLQKS 294
Query: 338 AKTILE 343
AK + E
Sbjct: 295 AKIVDE 300
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 172/317 (54%), Gaps = 26/317 (8%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K KI+V+G G +G+A I + + L L+D ++ +G +DL+ LP +I
Sbjct: 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDL-SEGTKGATMDLE--IFNLPNVEI 68
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
S D + +A S + I T + + + F+A++P L YS +LL+ +
Sbjct: 69 --SKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
PV+I+TYV WKLS P+NRVIG G NLDS R ++++ + L + +++GE G+
Sbjct: 126 QPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDK 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
V WS G ++S + Q++ + A E++ +KG SW++G S A
Sbjct: 186 VLTWS----GQEEVVSHTSQVQLS--------------NRAMELLRVKGQRSWSVGLSVA 227
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEE-SHR 333
++ SI+ +++K+H VS LAKG+Y I+ +VFLSLP LG GV V L ++ + +
Sbjct: 228 DMVDSIVNNKKKVHSVSALAKGYYDIN-SEVFLSLPCILGTNGVSEVIKTTLKEDTVTEK 286
Query: 334 LRNSAKTILEVQSQLGI 350
L++SA +I +Q QL +
Sbjct: 287 LQSSASSIHSLQQQLKL 303
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 25/314 (7%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
K+ +G G VG A T L V+E+ALVD D GE +DL HAAA + + KI+
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DY++ GS++ +VTAG + G K I +V+ +P+ +L+V NP+
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVA 216
D++TY+ WK SG P N V G G LDS R + L + A+++ +A+I+GEHGDS
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL---YNAGARNIRRAWIIGEHGDS--- 175
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKET-LESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
F+ K ++ E E++ +V A EVI KG T + +
Sbjct: 176 -------------MFVAKSLADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYR 222
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+ ++++ D +I P S++ +G YGI+ +V + +PA+LG+ G V +I L+ EE +LR
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGA-EVADIKLSDEEIEKLR 279
Query: 336 NSAKTILEVQSQLG 349
NSAK + E +LG
Sbjct: 280 NSAKILRERLEELG 293
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 13/321 (4%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
R KI++IG+G +G + + ++ + + L D G+ LD A + +
Sbjct: 7 RRKKIAMIGSGMIGGTMGYLCVLRELAD-VVLFDVVTGMPEGKALDDSQATSIADTNVSV 65
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV-----KYSPDCI 149
++ Y AGSD+ I+TAG ++ G+ F A I V KY P
Sbjct: 66 TSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF 125
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
+++V NP+D + + SGLP N V G LDS+RFR +AD L+++ +D+QA ++G
Sbjct: 126 VIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGT 185
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--W 267
HGD + L ++V G P+ F++K ++ K L I + + E++ L G S +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAK--LAEIVERTKKAGGEIVRLLGQGSAYY 243
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN 327
A SA +A++ ++D++++ P SV +G YG+ D+F+ LPA +G GG+ V + L
Sbjct: 244 APALSAITMAQAFLKDEKRVLPCSVYCQGEYGLH--DMFIGLPAVIGGGGIEQVIELELT 301
Query: 328 QEESHRLRNSAKTILEVQSQL 348
EE R S ++E+ L
Sbjct: 302 HEEQECFRKSVDDVVELNKSL 322
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 13/321 (4%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
R KI++IG+G +G + + ++ + + L D G+ LD A + +
Sbjct: 7 RRKKIAMIGSGMIGGTMGYLCVLRELAD-VVLFDVVTGMPEGKALDDSQATSIADTNVSV 65
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV-----KYSPDCI 149
++ Y AGSD+ I+TAG ++ G+ F A I V KY P
Sbjct: 66 TSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF 125
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
+++V NP+D + + SGLP N V G LDS+RFR +AD L+++ +D+QA ++G
Sbjct: 126 VIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGT 185
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--W 267
HGD + L ++V G P+ F++K ++ K L I + + E++ L G S +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAK--LAEIVERTKKAGGEIVRLLGQGSAYY 243
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN 327
A SA +A++ ++D++++ P SV +G YG+ D+F+ LPA +G GG+ V + L
Sbjct: 244 APALSAITMAQAFLKDEKRVLPCSVYCQGEYGLH--DMFIGLPAVIGGGGIEQVIELELT 301
Query: 328 QEESHRLRNSAKTILEVQSQL 348
EE R S ++E+ L
Sbjct: 302 HEEQECFRKSVDDVVELNKSL 322
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 15/320 (4%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP- 90
T + K+SVIG G G A +L Q + ++ LVD + +G+ LD+ A+
Sbjct: 5 TIKRKKVSVIGAGFTG-ATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGF 63
Query: 91 RTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCIL 150
I+ + DYA TA SD+ ++TAG + G K+I + K+SP+ I+
Sbjct: 64 DANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123
Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
+++ NPVD +TY +K +G P RVIG LD++RFR +A L+++ +D+ +++G H
Sbjct: 124 VVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH 183
Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--WA 268
GD V L GG+P+ + + KE LE+I + E++ L G S +A
Sbjct: 184 GDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYYA 236
Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
S + +I++DQR++ P +G YG D++L +P LG G+ + + L
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYS--DLYLGVPVILGGNGIEKIIELELLA 294
Query: 329 EESHRLRNSAKTILEVQSQL 348
+E L S +++ V L
Sbjct: 295 DEKEALDRSVESVRNVMKVL 314
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 12/304 (3%)
Query: 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASV 98
I+++G G VGMA A ++ + + ++L L+ K +GE LDL HAAA L +I S
Sbjct: 2 ITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
Y GSD+ +VTAG + G + + Y+ D I++I NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+TYV +K +G P RVIG LDS+R + ++ L V+ + V A ++G HG +
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS-WAIGYSAANLA 277
SVGGVP+ + K++I E + E V++ ++ L+GY+S +
Sbjct: 181 RLSSVGGVPLEHLMSKEEI-------EEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
+I RD ++I+P S+ +G YG + D+ +PA +G+ G+ + + L ++E + +
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYN--DIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEA 291
Query: 338 AKTI 341
+ +
Sbjct: 292 VQAV 295
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 163/308 (52%), Gaps = 13/308 (4%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
KIS+IG G VG A + ++ ++ L+D +G+ LDL A+ ++
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +YA TA SD+ +VT+GA + G +A I SP+ ++++V N
Sbjct: 61 GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+D +TY+A ++SG P RVIG LD++R+R +A V+ QDVQA ++G HGD V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
L ++ G+P+ F+ ++A + +E K E+++L G +A +
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++++D++++ PV+ G YG++ D++ +P LG GGV + + LN+EE
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
L SAK +
Sbjct: 292 LNASAKAV 299
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 16/317 (5%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS 97
KI+VIG+G +G IA I+ +D + ++ L D +G+ LD+ H+ T K++ +
Sbjct: 6 KIAVIGSGQIGGNIAY-IVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DYA +GSD+ I+TA + ++ + KY P+ ++ + NP+
Sbjct: 65 NDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPL 124
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D++ K+SGLP N+V G LDSSRFR +A H VNA DV A ++G HGD V
Sbjct: 125 DVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPA 184
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIH-----KEVVDSAYEVISLK-GYTSWAIGY 271
SS+SVGGVP+ SF+++ I E+ H KEV D +LK G +A
Sbjct: 185 TSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD------NLKTGTAYFAPAA 238
Query: 272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
+A +A + ++D++ + P S YG+ G +++ +P +G+ GV + + L E
Sbjct: 239 AAVKMAEAYLKDKKAVVPCSAFCSNHYGVKG--IYMGVPTIIGKNGVEDILELDLTPLEQ 296
Query: 332 HRLRNSAKTILEVQSQL 348
L S + + L
Sbjct: 297 KLLGESINEVNTISKVL 313
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 16/310 (5%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS 97
KI+VIG+G +G IA I+ +D + ++ L D +G+ LD+ H+ T K++ +
Sbjct: 6 KIAVIGSGQIGGNIAY-IVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
DYA +GSD+ I+TA + ++ + KY P+ ++ + NP+
Sbjct: 65 DDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPL 124
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D++ K+SGLP N+V G LDSSRFR +A H VNA DV A ++G HGD V
Sbjct: 125 DVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPA 184
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIH-----KEVVDSAYEVISLK-GYTSWAIGY 271
SS+SVGGVP+ SF+++ I E+ H KEV D +LK G +A
Sbjct: 185 TSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD------NLKTGTAYFAPAA 238
Query: 272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
+A +A + ++D++ + P S YG+ G +++ +P +G+ GV + + L E
Sbjct: 239 AAVKMAEAYLKDKKAVVPCSAFCSNHYGVKG--IYMGVPTIIGKNGVEDILELDLTPLEQ 296
Query: 332 HRLRNSAKTI 341
L S +
Sbjct: 297 KLLGESINEV 306
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 13/308 (4%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
KIS+IG G VG A + ++ ++ L+D +G+ LDL A+ ++
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +YA TA SD+ +VT+GA + G +A I SP+ ++++V N
Sbjct: 61 GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+D +TY+A ++SG P RVIG LD++R+R +A V+ +DVQA ++G HGD V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
L ++ G+P+ F+ ++A + +E K E+++L G +A +
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++++D++++ PV+ G YG++ D++ +P LG GGV + + LN+EE
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
L SAK +
Sbjct: 292 LNASAKAV 299
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
KIS+IG G VG A + ++ ++ L+D +G+ LDL A+ ++
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +YA TA SD+ +VT+GA + G +A I SP+ ++++V N
Sbjct: 61 GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+D +TY+A ++SG P RVIG LD++R+R +A V+ +DVQA ++G HGD V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
L ++ G+P+ F+ ++A E E+V+ + G +A + A
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVN-----LLKTGSAYYAPAAATAQ 235
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+ ++++D++++ PV+ G YG++ D++ +P LG GGV + + LN+EE L
Sbjct: 236 MVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMALLN 293
Query: 336 NSAKTI 341
SAK +
Sbjct: 294 ASAKAV 299
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 162/308 (52%), Gaps = 13/308 (4%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
KIS+IG G VG A + ++ ++ L+D +G+ LDL A+ ++
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ +YA TA SD+ +VT+GA + G +A I SP+ ++++V N
Sbjct: 61 GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+D +TY+A ++SG P RVIG LD++R+R +A V+ +DVQA ++G HGD V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
L + G+P+ F+ ++A + +E K E+++L G +A +
Sbjct: 181 PLPRFSCISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++++D++++ PV+ G YG++ D++ +P LG GGV + + LN+EE
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
L SAK +
Sbjct: 292 LNASAKAV 299
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 158/307 (51%), Gaps = 15/307 (4%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
KI +IG GNVG A+A ++ Q ++ +DA K++ + +D Q A A L +
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62
Query: 99 DYAVTAGSDLCIVTAGARQIAGEX----XXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
D+A A +D+ I T G ++ + +++ L + +L++++
Sbjct: 63 DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVD++T + ++G P+++VIG+GT LD++R + + + D++ + V Y +GEHG+S
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQ 182
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
WS++ V G PI++ + I L +I +E + V++ KGYTS+ + SA
Sbjct: 183 FVAWSTVRVMGQPIVTLADAGDI-----DLAAIEEEARKGGFTVLNGKGYTSYGVATSAI 237
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
+A++++ D VS D ++LS PA +GR GVL T + L +E +L
Sbjct: 238 RIAKAVMADAHAELVVSNRR------DDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291
Query: 335 RNSAKTI 341
S I
Sbjct: 292 LQSRDYI 298
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 6 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AGSD+ IVTAG + G+ I + K P+ +++
Sbjct: 65 NTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
+
Sbjct: 301 KF 302
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 6 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AGSD+ IVTAG + G+ I + K P+ +++
Sbjct: 65 NTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
+
Sbjct: 301 KF 302
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 5 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 63
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AG+D+ IVTAG + G+ I + K P+ +++
Sbjct: 64 NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 124 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 242 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 299
Query: 333 RL 334
+
Sbjct: 300 KF 301
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 6 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AG+D+ IVTAG + G+ I + K P+ +++
Sbjct: 65 NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
+
Sbjct: 301 KF 302
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 5 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 63
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AG+D+ IVTAG + G+ I + K P+ +++
Sbjct: 64 NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 124 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 242 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 299
Query: 333 RL 334
+
Sbjct: 300 KF 301
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 164/316 (51%), Gaps = 13/316 (4%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---A 87
P R+ KI++IG+G +G +A ++ ++ L D +G+ LD+ ++
Sbjct: 2 PGSMARN-KIALIGSGMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDG 59
Query: 88 FLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPD 147
F K + DYA G+D+ IVTAG + G + + + KY+P+
Sbjct: 60 F--DAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPE 117
Query: 148 CILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
++ + NP+D + + K SGLP+++V+G LDS+RFR+ L++ +V+ +DV +++
Sbjct: 118 AFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 208 GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYT 265
G HGDS V L +V G+P+ ++ + +K L+ I + D E++ L G
Sbjct: 178 GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDK--LDKIIQRTRDGGAEIVGLLKTGSA 235
Query: 266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIH 325
+A SA +A S ++D++++ PV+ G YG+ D+++ +P +G GV + I
Sbjct: 236 FYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVK--DMYVGVPTVIGANGVERIIEID 293
Query: 326 LNQEESHRLRNSAKTI 341
L+++E + S ++
Sbjct: 294 LDKDEKAQFDKSVASV 309
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ L D + G+ LD H K+ S
Sbjct: 6 KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y AG+D+ IVTAG + G+ I + K P+ +++
Sbjct: 65 NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ + I+ LE+I V++A E+++L A +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHAAPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG D+F P LG GV V + LN EE
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
+
Sbjct: 301 KF 302
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
P+ +R K+++IG+G +G + ++ + + L D G+ LDL H + +
Sbjct: 1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 58
Query: 91 RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
T + +Y+ A G+D IVTAG ++ G+ F + I +
Sbjct: 59 DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 118
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
KY P +++V NP+D + V + SG+P+N + G LDS RFR +AD L V+ +DV
Sbjct: 119 KYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
QA ++G HGD V L I+V G PI F+ K + EK+ LE I + S E++
Sbjct: 179 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 236
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
+G +A SA +A S + D++++ P SV G YG+ D+F+ LPA +G G+
Sbjct: 237 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 292
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
P+ +R K+++IG+G +G + ++ + + L D G+ LDL H + +
Sbjct: 3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 60
Query: 91 RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
T + +Y+ A G+D IVTAG ++ G+ F + I +
Sbjct: 61 DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 120
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
KY P +++V NP+D + V + SG+P+N + G LDS RFR +AD L V+ +DV
Sbjct: 121 KYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
QA ++G HGD V L I+V G PI F+ K + EK+ LE I + S E++
Sbjct: 181 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 238
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
+G +A SA +A S + D++++ P SV G YG+ D+F+ LPA +G G+
Sbjct: 239 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 294
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ + D + +G+ LD H+ K+ S
Sbjct: 5 KIVLVGSGMIGGVMA-TLIVQKNLGDVVMFDVVKNMPQGKALDTSHSNVMAYSNCKVTGS 63
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y G+D+ IVTAG + G+ I + P+ +++
Sbjct: 64 NSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + ++ SG+P N++IG G LD+SR ++ ++ L+V +DV A IVG HG+
Sbjct: 124 VTNPVDVMVQLLFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ ++I E +E I V++A E+++L A +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKKIT--DEEVEGIFDRTVNTALEIVNLLASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S ++D +K+ S L +G YG ++F P +G GV V + LN EE
Sbjct: 242 IIEMAESYLKDIKKVLVCSTLLEGQYG--HSNIFGGTPLVIGGTGVEQVIELQLNAEEKT 299
Query: 333 RL 334
+
Sbjct: 300 KF 301
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
P+ +R K+++IG+G +G + ++ + + L D G+ LDL H + +
Sbjct: 3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 60
Query: 91 RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
T + +Y+ A G+D IVTAG ++ G+ F + I +
Sbjct: 61 DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 120
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
KY P +++V NP+D + V + SG+P+N + G LDS RFR +AD L V+ +DV
Sbjct: 121 KYCPKTFIIVVTNPLDCMVKVMXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
QA ++G HGD V L I+V G PI F+ K + EK+ LE I + S E++
Sbjct: 181 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 238
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
+G +A SA +A S + D++++ P SV G YG+ D+F+ LPA +G G+
Sbjct: 239 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 294
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 11/302 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
KI ++G+G +G +A T++ Q + ++ + D + G+ LD H K+ S
Sbjct: 6 KIVLVGSGMIGGVMA-TLIVQKNLGDVVMFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
Y +D+ IVTAG + G+ I + P+ +++
Sbjct: 65 NTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V NPVD++ + + SG+P N+++G G LD+SR ++ ++ L+V +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V L I+VGG+P+ F+ ++I + L++I +++A E+++L A +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKKIT--DQELDAIFDRTINTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
+A S IRD RK+ S L +G YG D+F P +G GV V + LN +E
Sbjct: 243 IIEMAESYIRDLRKVLICSTLLEGQYG--HKDIFAGTPLVIGGNGVEQVIELQLNADEKK 300
Query: 333 RL 334
+
Sbjct: 301 KF 302
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55 TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
I +D +E+ VD K D G+ D H A+ T++ Y TAGSD+ ++T
Sbjct: 19 NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
AG + G+ + I L +++ D I L +NPVD+L ++
Sbjct: 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
+VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+ V ++S +SV G P S
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
EK+Q+ ++ +SA +VI KG T W A++ +I+ D ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
V +G +G + D +P LG GV + L+ E + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55 TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
I +D +E+ VD K D G+ D H A+ T++ Y TAGSD+ ++T
Sbjct: 20 NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 78
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
AG + G+ + I L +++ D I L +NPVD+L ++
Sbjct: 79 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 138
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
+VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+ V ++S +SV G P S
Sbjct: 139 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEFSG 198
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
EK+Q+ ++ +SA +VI KG T W A++ +I+ D ++ P S
Sbjct: 199 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 248
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
V +G +G + D +P LG GV + L+ E + ++A+ +
Sbjct: 249 VKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKL 296
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55 TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
I +D +E+ VD K D G+ D H A+ T++ Y TAGSD+ ++T
Sbjct: 19 NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
AG + G+ + I L +++ D I L +NPVD+L ++
Sbjct: 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
+VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+ V ++S + V G P S
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
EK+Q+ ++ +SA +VI KG T W A++ +I+ D ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGRVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
V +G +G + D +P +LG GV + L+ E + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55 TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
I +D +E+ VD K D G+ D H A+ T++ Y TAGSD+ ++T
Sbjct: 20 NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 78
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
AG + G+ + I L +++ D I L +NPVD+L ++
Sbjct: 79 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 138
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
+VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+ V ++S + V G P S
Sbjct: 139 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 198
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
EK+Q+ ++ +SA +VI KG T W A++ +I+ D ++ P S
Sbjct: 199 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 248
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
V +G +G + D +P +LG GV + L+ E + ++A+ +
Sbjct: 249 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 296
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55 TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
I +D +E+ VD K D G+ D H A+ T++ Y TAGSD+ ++T
Sbjct: 19 NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
AG + G+ + I L +++ D I L +NPVD+L ++
Sbjct: 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
+VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+ V ++S + V G P S
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
EK+Q+ ++ +SA +VI KG T W A++ +I+ D ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
V +G +G + D +P +LG GV + L+ E + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 9/313 (2%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
KI+++G GN+G +A L + ++ L D G+ LDL K+
Sbjct: 5 RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
+ DY SD+ IVTAG + G + + + P+ ++ + N
Sbjct: 64 GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+DI K SG+P N+++G LDS+RFR LAD L+V+ Q VQAY+ G HGD+ V
Sbjct: 124 PLDIXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGHGDTXV 183
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
L +V GV + +++ ++ ++E L++I E+++L G +A +
Sbjct: 184 PLTKXSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAG 241
Query: 274 ANLARSIIRDQRKIHPVSVLAK-GFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
A S ++D++ I P + K G YG+D D+F+ +P ++ GV + + ++ +E
Sbjct: 242 IQXAESFLKDKKXILPCAAKVKAGXYGLD-EDLFVGVPTEISANGVRPI-EVEISDKERE 299
Query: 333 RLRNSAKTILEVQ 345
+L+ S I ++
Sbjct: 300 QLQVSINAIKDLN 312
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 155/306 (50%), Gaps = 8/306 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
KIS+IG G +G IA +L Q + ++ + D +G+ LDL H A + KI
Sbjct: 16 KISIIGAGQIGSTIA-LLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE 74
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
+Y SD+ I+TAG + ++ + KY P+ ++ + NP+
Sbjct: 75 NNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPL 134
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D + Y + SG+P+N+V G LDS+RFR L+ L V DV A +VG HGD + L
Sbjct: 135 DAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPL 194
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAAN 275
SS+++GG+ + F+E+ +I + + + I K+ E++ L G +A SA
Sbjct: 195 TSSVTIGGILLSDFVEQGKITHSQ--INEIIKKTAFGGGEIVELLKTGSAFYAPAASAVA 252
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+A++ ++D + + S G Y ++ ++F+ +P +G+ G+ V ++L+ +E
Sbjct: 253 MAQAYLKDSKSVLVCSTYLTGQYNVN--NLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFS 310
Query: 336 NSAKTI 341
S ++I
Sbjct: 311 KSVESI 316
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 161/313 (51%), Gaps = 21/313 (6%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALV--DAKADKLRGEMLDLQHAAAFLPRTKIL 95
K+++IG +G VG A A + + F+++L L+ + +KL G D+ A L T+
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA---LAGTRSD 58
Query: 96 ASV------DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCI 149
A++ + + SD+ I+T+G + G + + D
Sbjct: 59 ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTK 117
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
+ ++ NPVD++TY A S N+V G GT+LDS RF+ +A V+ +V+ I+GE
Sbjct: 118 IFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGE 177
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI 269
HGDS V L S+ S+GG+PI F +++ ++ I ++V ++I LKG + +
Sbjct: 178 HGDSMVPLLSATSIGGIPIQKFERFKELP-----IDEIIEDVKTKGEQIIRLKGGSEFGP 232
Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
+ N+ R I+ +++++ +S G F GI DV + +P ++GR G+ V +I L++
Sbjct: 233 AAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIR--DVCIGVPVKIGRDGIEEVVSIELDK 290
Query: 329 EESHRLRNSAKTI 341
+E R SA+ I
Sbjct: 291 DEIIAFRKSAEII 303
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 7/232 (3%)
Query: 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
K++++G G +G +AQT L L D A L G +++H +
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSD 69
Query: 98 VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCI-LLIVANP 156
+ A+T + + + GA + G + + Y PDC ++I+ NP
Sbjct: 70 IKEALT-DAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSV 215
DI V SGL ++V + LDS+R + LA H + V G HG+
Sbjct: 129 ADITGLVTLIYSGLKPSQVT-TLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW 267
S+ V G P+ + ++ E+ + + VV +I L+G +S+
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKLTNEQ--WAELKQRVVKGGANIIKLRGRSSF 237
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 32/293 (10%)
Query: 39 KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
K++V+G G +G A+A + TQ EL+L D A G +DL H +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
G+D+ +++AG R+ G K ++ + K P + I+ NP
Sbjct: 61 EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V+ +A K +G+ N++ G T LD R +A+ +V+ ++G H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
S V + +S VP +SF E Q++A + K + ++ EV+ K G + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
G +AA S++R +Q + V G Y F S P LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 32/293 (10%)
Query: 39 KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
K++V+G G +G A+A + TQ EL+L D A G +DL H +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
G+D+ +++AG + G K ++ + K P + I+ NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V+ +A K +G+ N++ G T LD R +A+ +V+ ++G H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
S V + +S VP +SF E Q++A + K + ++ EV+ K G + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
G +AA S++R +Q + V G Y F S P LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 31/316 (9%)
Query: 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
K++++G G +G +A + V L L D G D+ H FL +
Sbjct: 46 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV--NAPGVTADISHMDTGAVVRGFLGQ 103
Query: 92 TKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILL 151
++ A++ G DL IV AG + G K + + K P I+
Sbjct: 104 QQLEAAL-----TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN 158
Query: 152 IVANPVDILTYVA---WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG 208
+++NPV+ +A +K +G + + T LD R +A+ L ++ +DV +VG
Sbjct: 159 LISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
Query: 209 EH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW 267
H G + + L S + P SF + ++I+Y + +++ EVV E + G +
Sbjct: 219 GHAGVTILPLLSQVK----PPSSFTQ-EEISYLTDRIQNGGTEVV----EAKAGAGSATL 269
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV-FLSLPAQLGRGGVLGVTNI-H 325
++ Y+A A + +R R V+ F ++ F + +LGR G+ V ++
Sbjct: 270 SMAYAAVKFADACLRGLR--GDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGP 327
Query: 326 LNQEESHRLRNSAKTI 341
LN+ E L + K +
Sbjct: 328 LNEYERIGLEKAKKEL 343
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 33/317 (10%)
Query: 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
K++++G G +G +A + V L L D G D+ H FL +
Sbjct: 10 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV--NAPGVTADISHMDTGAVVRGFLGQ 67
Query: 92 TKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILL 151
++ A++ G DL IV AG + G K + + K P I+
Sbjct: 68 QQLEAAL-----TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN 122
Query: 152 IVANPVD----ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
+++NPV+ I V K R++G T LD R +A+ L ++ +DV +V
Sbjct: 123 LISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 181
Query: 208 GEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS 266
G H G + + L S + P SF + ++I+Y + +++ EVV E + G +
Sbjct: 182 GGHAGVTILPLLSQVK----PPSSFTQ-EEISYLTDRIQNGGTEVV----EAKAGAGSAT 232
Query: 267 WAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV-FLSLPAQLGRGGVLGVTNIH 325
++ Y+A A + +R R V+ F ++ F + +LGR G+ V ++
Sbjct: 233 LSMAYAAVKFADACLRGLR--GDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLG 290
Query: 326 -LNQEESHRLRNSAKTI 341
LN+ E L + K +
Sbjct: 291 PLNEYERIGLEKAKKEL 307
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 32/293 (10%)
Query: 39 KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
K++V+G G +G A+A + TQ EL+L D A G +DL H +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
G+D+ +++AG + G K ++ + K P + I+ NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V+ +A K +G+ N++ G T LD +A+ +V+ ++G H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIICSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
S V + +S VP +SF E Q++A + K + ++ EV+ K G + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
G +AA S++R +Q + V G Y F S P LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 33/293 (11%)
Query: 39 KISVIGT-GNVGMAIAQTILTQDFV---EELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
K++VIG G +G A+A +L ++ + +LAL D A G DL H +
Sbjct: 5 KVAVIGAAGGIGQALA--LLLKNRLPAGSDLALYDI-APVTPGVAADLSHIPTHVSIKGY 61
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
G+D+ +++AG + G K++ + P+ + I+
Sbjct: 62 AGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIIT 121
Query: 155 NPVDILTYVA---WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHG 211
NPV+ +A K +G+ R + T LD R +A+ + +V+ ++G H
Sbjct: 122 NPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGH- 180
Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWA 268
S +++ +P+LS +E + + E + ++ K + ++ EV+ K G + +
Sbjct: 181 -------SGVTI--LPLLSQVEG--VEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229
Query: 269 IGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
G +A ++++ + I V G + F + P +LG+ GV
Sbjct: 230 XGQAACRFGLALVKALQGEEVIEYAYVEGNGEHA-----SFFAQPVKLGKEGV 277
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/304 (19%), Positives = 118/304 (38%), Gaps = 27/304 (8%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
K++V+G +G +G ++ + V L L D G DL H L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRATVKGYLGP 59
Query: 98 VDYA-VTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
G D+ ++ AG + G + ++ PD ++ I++NP
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
Query: 157 VD---ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
V+ +T +K G+ + I T LD R +A+ ++ V ++G H
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGK 179
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAIG 270
++ +P++S ++ + ++ L ++ + ++ EV+ K G + ++
Sbjct: 180 TI----------IPLISQCT-PKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228
Query: 271 YSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV-FLSLPAQLGRGGV---LGVTNIHL 326
Y+ A S++ V+ F D + S P LG+ G+ LG+ I
Sbjct: 229 YAGARFVFSLVDAMNGKE--GVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISP 286
Query: 327 NQEE 330
+E+
Sbjct: 287 FEEK 290
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 21/255 (8%)
Query: 35 KRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
+ + K++V+G +G +G ++ + V L L D G DL H
Sbjct: 26 QNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETKAAVKG 83
Query: 94 ILASVDYA-VTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLI 152
L G D+ ++ AG + G + ++ P+ ++ +
Sbjct: 84 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICV 143
Query: 153 VANPVD---ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
+ANPV+ +T +K G+ + I T LD R +A+ ++ V ++G
Sbjct: 144 IANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGG 203
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTS 266
H ++ +P++S ++ + ++ L ++ + ++ EV+ K G +
Sbjct: 204 HAGKTI----------IPLISQCTP-KVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSAT 252
Query: 267 WAIGYSAANLARSII 281
++ Y+ A S++
Sbjct: 253 LSMAYAGARFVFSLV 267
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 33/217 (15%)
Query: 147 DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYI 206
D +L+V NP + +A+K + + R + T LD +R + LA ++
Sbjct: 123 DVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMT 182
Query: 207 V-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT 265
V G H + V G P L ++ + YEK + + V +I +G +
Sbjct: 183 VWGNHSSTMFPDLFHAEVDGRPALELVDMEW--YEKVFIPT----VAQRGAAIIQARGAS 236
Query: 266 --------------SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPA 311
WA+G + ++V ++G YGI G V+ S P
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVS-----------MAVPSQGEYGIPEGIVY-SFPV 284
Query: 312 QLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G V + +N+ R+ +A+ +L+ Q+
Sbjct: 285 TAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQV 321
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 33/217 (15%)
Query: 147 DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYI 206
D +L+V NP + +A+K + + R + T LD +R + LA ++
Sbjct: 123 DVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMT 182
Query: 207 V-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT 265
V G H + V G P L ++ + YEK + + V +I +G +
Sbjct: 183 VWGNHSSTMFPDLFHAEVDGRPALELVDMEW--YEKVFIPT----VAQRGAAIIQARGAS 236
Query: 266 --------------SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPA 311
WA+G + ++V ++G YGI G V+ S P
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVS-----------MAVPSQGEYGIPEGIVY-SFPV 284
Query: 312 QLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G V + +N+ R+ +A+ +L+ Q+
Sbjct: 285 TAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQV 321
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 33/217 (15%)
Query: 147 DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYI 206
D +L+V NP + +A+K + + R + T LD +R + LA ++
Sbjct: 123 DVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMT 182
Query: 207 V-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT 265
V G H + V G P L ++ + YEK + + V +I +G +
Sbjct: 183 VWGNHSSTMFPDLFHAEVDGRPALELVDMEW--YEKVFIPT----VAQRGAAIIQARGAS 236
Query: 266 --------------SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPA 311
WA+G + ++V ++G YGI G V+ S P
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVS-----------MAVPSQGEYGIPEGIVY-SFPV 284
Query: 312 QLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G V + +N+ R+ +A+ +L+ Q+
Sbjct: 285 TAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQV 321
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 33/217 (15%)
Query: 147 DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYI 206
D +L+V NP + +A+K + + R + T LD +R + LA ++
Sbjct: 123 DVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMT 182
Query: 207 V-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT 265
V G H V G P L ++ + YEK + + V +I +G +
Sbjct: 183 VWGNHSSIMFPDLFHAEVDGRPALELVDMEW--YEKVFIPT----VAQRGAAIIQARGAS 236
Query: 266 --------------SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPA 311
WA+G + ++V ++G YGI G V+ S P
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVS-----------MAVPSQGEYGIPEGIVY-SFPV 284
Query: 312 QLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
G V + +N+ R+ +A+ +L+ Q+
Sbjct: 285 TAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQV 321
>pdb|2G4R|A Chain A, Anomalous Substructure Of Moga
pdb|2G4R|B Chain B, Anomalous Substructure Of Moga
pdb|2G4R|C Chain C, Anomalous Substructure Of Moga
Length = 160
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 229 LSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG------------YTSWAIGYSAANL 276
S ++ Q +A E++H + V++ +VI G +T + Y L
Sbjct: 37 FSSVQPQVVADGNPVGEALH-DAVNAGVDVIITSGGTGISPTDTTPEHTVAVLDYVIPGL 95
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLG 314
A +I R P SVL++G G+ G + ++LP G
Sbjct: 96 ADAIRRSGLPKVPTSVLSRGVCGVAGRTLIINLPGSPG 133
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 146
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 102 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 147
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 146
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 146
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 101 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 146
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 150 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 195
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 150 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 195
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79
P PTK+ K+ +IG+G G+A A+ + Q F ++ L++A+ D++ G +
Sbjct: 272 PLPTKKTGKVIIIGSGVSGLAAARQL--QSFGMDVTLLEAR-DRVGGRV 317
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
pdb|1YKD|B Chain B, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
Length = 398
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 244 LESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSV-LAKGFYGI 300
LE K V+D A E+++ T W I L I +D + V + KGF GI
Sbjct: 215 LEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFAGI 272
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILS---FLEKQQIAYEKETLESIHKEVV 252
D Q+ +I+G G++ L I G + S + ++++ +E+E +++++EVV
Sbjct: 19 DFKMQNKSVFILGASGETGKVLLKEIL--GQNLFSKVTLIGRRKLTFEEEAYKNVNQEVV 76
Query: 253 DSAYEVISLKGYTSWAIGYSAANLARS 279
D + + +G+ RS
Sbjct: 77 DFEKLDVYASAFQGHDVGFCCLGTTRS 103
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 219 SSISVGGVPILSFL-EKQQIAYEKETLESIHK 249
S IS+GG+PILS L + + E+E ES+HK
Sbjct: 420 SWISIGGIPILSHLFFRLTDSIEEEAAESMHK 451
>pdb|1BFO|A Chain A, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|C Chain C, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|E Chain E, Campath-1g Igg2b Rat Monoclonal Fab
pdb|1BFO|G Chain G, Campath-1g Igg2b Rat Monoclonal Fab
Length = 214
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY 205
P DI V WK+ G N V+ S T+ DS+ + ++ L + D Q++
Sbjct: 141 PRDI--SVKWKIDGTERNGVLNSVTDQDSADSTYSMSSTLSLTKADYQSH 188
>pdb|3ABI|A Chain A, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
pdb|3ABI|B Chain B, Crystal Structure Of L-Lysine Dehydrogenase From
Hyperthermophilic Archaeon Pyrococcus Horikoshii
Length = 365
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 36 RHTKISVIGTGNVGMAIA 53
RH K+ ++G GN+G AIA
Sbjct: 15 RHMKVLILGAGNIGRAIA 32
>pdb|1GNX|A Chain A, B-Glucosidase From Streptomyces Sp
pdb|1GNX|B Chain B, B-Glucosidase From Streptomyces Sp
pdb|1GON|A Chain A, B-Glucosidase From Streptomyces Sp
pdb|1GON|B Chain B, B-Glucosidase From Streptomyces Sp
Length = 479
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 233 EKQQIAYEKETLESIHKEVVDSA----YEVISLKGYTSWAIGYS 272
+ ++IAY ++ L ++H+ + D + Y + SL WA GYS
Sbjct: 400 DPERIAYVRDHLAAVHRAIKDGSDVRGYFLWSLLDNFEWAHGYS 443
>pdb|3PZY|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Mog
Protein From Mycobacterium Paratuberculosis
Length = 164
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 229 LSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWA------------IGYSAANL 276
S + + +A E++ K +D +VI G T A + Y L
Sbjct: 41 FSSAQPEVVADGSPVGEALRK-AIDDDVDVILTSGGTGIAPTDSTPDQTVAVVDYLIPGL 99
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLG 314
A +I R P SVL++G G+ G + ++LP G
Sbjct: 100 AEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPG 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,218,893
Number of Sequences: 62578
Number of extensions: 360505
Number of successful extensions: 1075
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 104
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)