Query 018760
Match_columns 350
No_of_seqs 208 out of 1822
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02602 lactate dehydrogenase 100.0 1.6E-74 3.5E-79 552.8 38.2 349 1-350 1-350 (350)
2 KOG1495 Lactate dehydrogenase 100.0 1.2E-74 2.6E-79 515.3 31.3 316 34-350 17-332 (332)
3 COG0039 Mdh Malate/lactate deh 100.0 1.2E-72 2.7E-77 525.8 33.0 305 38-348 1-307 (313)
4 cd05293 LDH_1 A subgroup of L- 100.0 1.6E-71 3.5E-76 526.5 34.6 311 36-347 2-312 (312)
5 cd05290 LDH_3 A subgroup of L- 100.0 5.1E-71 1.1E-75 521.6 34.1 302 39-345 1-306 (307)
6 PRK00066 ldh L-lactate dehydro 100.0 4.2E-70 9.2E-75 518.1 35.1 312 33-348 2-313 (315)
7 TIGR01771 L-LDH-NAD L-lactate 100.0 1.3E-68 2.9E-73 504.1 31.9 298 42-343 1-299 (299)
8 cd05291 HicDH_like L-2-hydroxy 100.0 2.4E-67 5.2E-72 498.8 34.5 304 38-346 1-305 (306)
9 TIGR01759 MalateDH-SF1 malate 100.0 1.5E-67 3.3E-72 500.4 32.7 305 35-347 1-322 (323)
10 PRK05442 malate dehydrogenase; 100.0 5.5E-67 1.2E-71 497.3 32.6 306 34-348 1-322 (326)
11 cd00300 LDH_like L-lactate deh 100.0 1E-66 2.2E-71 492.7 34.1 299 40-345 1-299 (300)
12 PTZ00117 malate dehydrogenase; 100.0 2E-66 4.3E-71 494.3 35.8 308 36-348 4-314 (319)
13 cd05292 LDH_2 A subgroup of L- 100.0 2.1E-66 4.6E-71 492.3 34.0 308 38-348 1-308 (308)
14 PTZ00082 L-lactate dehydrogena 100.0 5.8E-66 1.3E-70 490.7 36.9 310 34-348 3-320 (321)
15 PLN00112 malate dehydrogenase 100.0 2.4E-66 5.3E-71 506.1 34.6 308 33-347 96-419 (444)
16 TIGR01757 Malate-DH_plant mala 100.0 4E-66 8.8E-71 497.9 34.9 307 33-347 40-363 (387)
17 TIGR01763 MalateDH_bact malate 100.0 1.6E-65 3.6E-70 484.9 34.9 301 38-348 2-305 (305)
18 cd00704 MDH Malate dehydrogena 100.0 1.8E-65 3.9E-70 487.0 30.3 304 38-347 1-321 (323)
19 cd01338 MDH_choloroplast_like 100.0 9.5E-65 2.1E-69 481.9 32.2 306 36-349 1-321 (322)
20 PRK06223 malate dehydrogenase; 100.0 8.1E-63 1.7E-67 468.4 35.2 302 37-348 2-306 (307)
21 cd05294 LDH-like_MDH_nadp A la 100.0 4.8E-63 1E-67 469.1 33.4 303 38-347 1-308 (309)
22 cd01339 LDH-like_MDH L-lactate 100.0 1.5E-62 3.2E-67 465.0 34.3 297 40-346 1-300 (300)
23 cd01337 MDH_glyoxysomal_mitoch 100.0 8.2E-63 1.8E-67 464.9 32.1 288 38-347 1-305 (310)
24 TIGR01772 MDH_euk_gproteo mala 100.0 7.8E-63 1.7E-67 465.8 31.4 288 39-347 1-305 (312)
25 TIGR01758 MDH_euk_cyt malate d 100.0 5.5E-63 1.2E-67 470.2 29.5 303 39-348 1-322 (324)
26 PLN00135 malate dehydrogenase 100.0 1.8E-61 3.9E-66 455.6 30.4 277 64-347 15-303 (309)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 4.4E-61 9.6E-66 457.9 30.2 304 36-347 1-323 (325)
28 cd05295 MDH_like Malate dehydr 100.0 2.6E-60 5.7E-65 463.5 32.5 303 34-347 120-449 (452)
29 PTZ00325 malate dehydrogenase; 100.0 1.1E-59 2.3E-64 445.7 32.8 290 35-347 6-312 (321)
30 TIGR01756 LDH_protist lactate 100.0 2.3E-58 5E-63 435.6 30.2 275 64-347 17-307 (313)
31 PLN00106 malate dehydrogenase 100.0 8.2E-58 1.8E-62 433.2 33.8 291 35-347 16-323 (323)
32 PRK05086 malate dehydrogenase; 100.0 1.8E-57 3.9E-62 431.1 31.9 288 38-347 1-305 (312)
33 cd00650 LDH_MDH_like NAD-depen 100.0 2.3E-55 5E-60 408.5 30.9 258 40-345 1-262 (263)
34 KOG1494 NAD-dependent malate d 100.0 1.4E-48 3.1E-53 349.9 24.3 298 27-347 18-334 (345)
35 KOG1496 Malate dehydrogenase [ 100.0 2.1E-44 4.6E-49 316.7 21.3 305 34-346 1-324 (332)
36 cd05197 GH4_glycoside_hydrolas 100.0 1E-37 2.2E-42 306.4 29.3 287 38-337 1-380 (425)
37 PRK15076 alpha-galactosidase; 100.0 8.1E-38 1.8E-42 308.0 28.3 291 37-338 1-375 (431)
38 cd05296 GH4_P_beta_glucosidase 100.0 8.5E-37 1.8E-41 299.3 30.8 289 38-338 1-370 (419)
39 PF02866 Ldh_1_C: lactate/mala 100.0 1.9E-37 4E-42 271.1 18.1 167 180-348 1-170 (174)
40 cd05298 GH4_GlvA_pagL_like Gly 100.0 2.4E-35 5.2E-40 290.0 31.8 291 38-338 1-384 (437)
41 COG1486 CelF Alpha-galactosida 100.0 3.9E-34 8.4E-39 275.8 25.1 293 36-340 2-389 (442)
42 cd05297 GH4_alpha_glucosidase_ 100.0 1.1E-33 2.3E-38 279.2 28.8 289 38-338 1-378 (423)
43 PF00056 Ldh_1_N: lactate/mala 100.0 2.4E-33 5.3E-38 236.6 15.6 139 38-177 1-141 (141)
44 PF02056 Glyco_hydro_4: Family 99.9 4.4E-23 9.6E-28 179.6 15.4 154 39-197 1-183 (183)
45 COG1004 Ugd Predicted UDP-gluc 99.3 3.2E-11 6.9E-16 115.3 13.0 161 38-211 1-173 (414)
46 PF02737 3HCDH_N: 3-hydroxyacy 99.3 2.2E-11 4.8E-16 107.0 10.4 122 39-178 1-135 (180)
47 PRK07819 3-hydroxybutyryl-CoA 99.2 2.9E-10 6.3E-15 107.1 12.6 124 37-178 5-142 (286)
48 COG1250 FadB 3-hydroxyacyl-CoA 99.2 3E-10 6.4E-15 106.9 12.2 143 37-199 3-178 (307)
49 PRK07066 3-hydroxybutyryl-CoA 99.1 5.6E-10 1.2E-14 106.4 13.0 122 38-177 8-139 (321)
50 TIGR02441 fa_ox_alpha_mit fatt 99.1 7.2E-10 1.6E-14 116.7 12.8 145 36-199 334-510 (737)
51 TIGR02437 FadB fatty oxidation 99.1 1.1E-09 2.5E-14 114.9 13.6 145 36-199 312-488 (714)
52 PRK11730 fadB multifunctional 99.1 9.7E-10 2.1E-14 115.6 13.1 144 37-199 313-488 (715)
53 TIGR02440 FadJ fatty oxidation 99.1 1.9E-09 4E-14 113.2 13.9 145 36-199 303-480 (699)
54 PRK05808 3-hydroxybutyryl-CoA 99.0 3.5E-09 7.6E-14 99.5 13.0 123 38-178 4-139 (282)
55 PRK11154 fadJ multifunctional 99.0 2.9E-09 6.4E-14 111.9 13.3 145 36-199 308-485 (708)
56 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 1.2E-09 2.6E-14 96.3 8.1 148 38-195 1-164 (185)
57 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 3.4E-09 7.4E-14 107.0 11.8 146 36-199 4-180 (503)
58 PRK08293 3-hydroxybutyryl-CoA 99.0 6.8E-09 1.5E-13 97.8 12.7 124 37-178 3-141 (287)
59 PRK08268 3-hydroxy-acyl-CoA de 98.9 5.4E-09 1.2E-13 105.8 11.8 146 36-199 6-182 (507)
60 PRK07530 3-hydroxybutyryl-CoA 98.9 6.9E-09 1.5E-13 97.9 11.5 123 37-178 4-140 (292)
61 PRK06035 3-hydroxyacyl-CoA deh 98.9 1.3E-08 2.8E-13 96.0 12.5 122 38-178 4-142 (291)
62 PLN02545 3-hydroxybutyryl-CoA 98.9 2E-08 4.3E-13 95.0 13.7 123 37-178 4-140 (295)
63 PLN02353 probable UDP-glucose 98.9 1.2E-08 2.7E-13 102.1 10.7 126 37-163 1-137 (473)
64 KOG2304 3-hydroxyacyl-CoA dehy 98.8 2.4E-09 5.1E-14 94.9 3.3 126 34-178 8-153 (298)
65 TIGR01915 npdG NADPH-dependent 98.8 1.9E-07 4.1E-12 84.5 15.5 104 38-159 1-106 (219)
66 PRK06130 3-hydroxybutyryl-CoA 98.8 6.1E-08 1.3E-12 92.3 12.3 124 37-178 4-136 (311)
67 PRK09260 3-hydroxybutyryl-CoA 98.8 6.4E-08 1.4E-12 91.2 11.5 105 38-159 2-120 (288)
68 PRK07531 bifunctional 3-hydrox 98.7 1.4E-07 3E-12 95.5 12.3 112 37-165 4-125 (495)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 98.7 3.1E-08 6.7E-13 85.0 5.3 110 39-170 1-124 (157)
70 PRK06129 3-hydroxyacyl-CoA deh 98.6 2.2E-07 4.7E-12 88.5 11.3 110 38-164 3-126 (308)
71 PF03807 F420_oxidored: NADP o 98.6 9.1E-08 2E-12 74.8 6.4 94 39-156 1-96 (96)
72 PF11975 Glyco_hydro_4C: Famil 98.6 6.3E-07 1.4E-11 81.9 11.5 66 274-340 140-206 (232)
73 PRK15057 UDP-glucose 6-dehydro 98.5 6.8E-07 1.5E-11 87.7 10.6 119 38-165 1-129 (388)
74 COG0240 GpsA Glycerol-3-phosph 98.5 1.3E-06 2.7E-11 82.7 11.3 130 37-194 1-144 (329)
75 COG2085 Predicted dinucleotide 98.5 1.8E-06 3.9E-11 76.6 11.3 96 37-158 1-97 (211)
76 PRK12439 NAD(P)H-dependent gly 98.5 2.3E-06 4.9E-11 82.7 13.0 111 34-167 4-129 (341)
77 PRK15182 Vi polysaccharide bio 98.4 2.2E-06 4.8E-11 85.1 12.8 115 34-161 3-128 (425)
78 PRK12549 shikimate 5-dehydroge 98.4 3.9E-06 8.5E-11 79.0 13.2 91 12-113 109-200 (284)
79 PF03446 NAD_binding_2: NAD bi 98.4 2.8E-06 6.2E-11 73.2 10.5 64 37-113 1-65 (163)
80 TIGR03026 NDP-sugDHase nucleot 98.4 3.4E-06 7.5E-11 83.5 12.2 115 38-160 1-127 (411)
81 PRK06522 2-dehydropantoate 2-r 98.3 2.7E-06 5.9E-11 80.3 10.1 105 38-163 1-109 (304)
82 COG0677 WecC UDP-N-acetyl-D-ma 98.3 1E-05 2.2E-10 77.8 13.5 137 37-182 9-161 (436)
83 PRK00094 gpsA NAD(P)H-dependen 98.3 2.9E-06 6.2E-11 81.0 10.0 105 37-159 1-110 (325)
84 PRK14620 NAD(P)H-dependent gly 98.3 3.6E-06 7.8E-11 80.7 9.6 104 38-159 1-111 (326)
85 PRK11064 wecC UDP-N-acetyl-D-m 98.3 1.5E-05 3.3E-10 79.0 13.9 116 37-163 3-129 (415)
86 PRK14618 NAD(P)H-dependent gly 98.3 5.4E-06 1.2E-10 79.6 10.4 101 37-158 4-108 (328)
87 PTZ00345 glycerol-3-phosphate 98.2 1.6E-05 3.5E-10 77.3 12.2 119 34-168 8-150 (365)
88 cd01065 NAD_bind_Shikimate_DH 98.2 7E-06 1.5E-10 69.7 8.5 91 13-117 2-93 (155)
89 PRK08229 2-dehydropantoate 2-r 98.2 9E-06 1.9E-10 78.3 10.2 102 37-161 2-114 (341)
90 PRK12921 2-dehydropantoate 2-r 98.2 8.2E-06 1.8E-10 77.2 9.5 113 38-176 1-121 (305)
91 PRK07680 late competence prote 98.1 2.2E-05 4.8E-10 73.3 10.2 96 38-158 1-100 (273)
92 TIGR03376 glycerol3P_DH glycer 98.1 1.5E-05 3.2E-10 76.9 8.8 115 39-169 1-138 (342)
93 PRK14619 NAD(P)H-dependent gly 98.0 2.7E-05 5.8E-10 74.1 10.1 79 36-156 3-84 (308)
94 PRK06249 2-dehydropantoate 2-r 98.0 3.7E-05 7.9E-10 73.4 10.9 116 36-177 4-126 (313)
95 PRK07417 arogenate dehydrogena 98.0 2.7E-05 5.9E-10 73.0 9.1 66 38-114 1-66 (279)
96 PRK05708 2-dehydropantoate 2-r 98.0 5.1E-05 1.1E-09 72.2 11.0 120 37-178 2-125 (305)
97 COG1893 ApbA Ketopantoate redu 98.0 1.9E-05 4.1E-10 75.2 8.0 121 38-182 1-126 (307)
98 PRK11880 pyrroline-5-carboxyla 98.0 3.8E-05 8.3E-10 71.4 9.5 95 37-158 2-98 (267)
99 PRK08507 prephenate dehydrogen 98.0 7.1E-05 1.5E-09 70.0 11.2 66 38-113 1-66 (275)
100 PRK12491 pyrroline-5-carboxyla 97.9 7.2E-05 1.6E-09 70.0 10.3 67 37-113 2-71 (272)
101 PRK07502 cyclohexadienyl dehyd 97.9 0.00014 3E-09 69.1 12.1 69 37-114 6-75 (307)
102 PF01488 Shikimate_DH: Shikima 97.9 4.7E-05 1E-09 63.6 7.8 77 35-117 10-87 (135)
103 PLN02688 pyrroline-5-carboxyla 97.9 7.3E-05 1.6E-09 69.4 9.7 65 38-113 1-69 (266)
104 COG1748 LYS9 Saccharopine dehy 97.9 0.00028 6.1E-09 68.8 13.9 75 37-115 1-78 (389)
105 PRK07634 pyrroline-5-carboxyla 97.9 0.00012 2.6E-09 67.0 10.8 68 36-113 3-74 (245)
106 COG0345 ProC Pyrroline-5-carbo 97.8 9.3E-05 2E-09 68.6 9.5 95 37-157 1-98 (266)
107 PRK08269 3-hydroxybutyryl-CoA 97.8 0.00015 3.2E-09 69.3 11.0 134 48-199 1-175 (314)
108 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.0001 2.2E-09 69.8 8.9 93 38-157 1-96 (298)
109 COG2084 MmsB 3-hydroxyisobutyr 97.8 0.00018 3.9E-09 67.4 10.1 92 38-155 1-96 (286)
110 PRK07679 pyrroline-5-carboxyla 97.8 0.00022 4.8E-09 66.9 10.7 67 37-113 3-73 (279)
111 PTZ00142 6-phosphogluconate de 97.8 0.00013 2.8E-09 73.3 9.5 98 38-157 2-104 (470)
112 PRK08655 prephenate dehydrogen 97.7 0.00037 8.1E-09 69.6 12.3 65 38-114 1-67 (437)
113 TIGR01505 tartro_sem_red 2-hyd 97.7 0.00016 3.5E-09 68.1 9.1 63 39-114 1-64 (291)
114 PF02558 ApbA: Ketopantoate re 97.7 9.9E-05 2.1E-09 62.4 6.7 112 40-177 1-121 (151)
115 COG0169 AroE Shikimate 5-dehyd 97.7 0.00022 4.8E-09 66.8 9.2 96 12-116 106-201 (283)
116 PRK06928 pyrroline-5-carboxyla 97.7 0.00048 1E-08 64.6 11.6 98 37-159 1-103 (277)
117 PRK15461 NADH-dependent gamma- 97.7 0.00033 7.2E-09 66.3 10.3 64 38-114 2-66 (296)
118 PRK14027 quinate/shikimate deh 97.7 0.00012 2.6E-09 68.9 7.2 94 11-115 108-204 (283)
119 cd05311 NAD_bind_2_malic_enz N 97.6 0.00068 1.5E-08 61.7 11.8 130 19-179 10-150 (226)
120 PTZ00431 pyrroline carboxylate 97.6 0.00031 6.8E-09 65.2 9.6 61 37-113 3-65 (260)
121 PRK11559 garR tartronate semia 97.6 0.00039 8.4E-09 65.7 10.3 64 38-114 3-67 (296)
122 PF10727 Rossmann-like: Rossma 97.6 0.0001 2.2E-09 60.9 5.5 104 34-164 7-116 (127)
123 KOG2666 UDP-glucose/GDP-mannos 97.6 7.1E-05 1.5E-09 69.9 4.8 82 37-118 1-91 (481)
124 TIGR01809 Shik-DH-AROM shikima 97.6 0.00023 4.9E-09 67.0 8.2 95 11-115 104-200 (282)
125 COG0287 TyrA Prephenate dehydr 97.6 0.0011 2.3E-08 62.3 12.5 94 37-154 3-98 (279)
126 PRK06545 prephenate dehydrogen 97.6 0.00075 1.6E-08 65.7 11.9 68 38-114 1-69 (359)
127 PRK12490 6-phosphogluconate de 97.6 0.00046 1E-08 65.4 10.1 90 38-155 1-95 (299)
128 PRK06476 pyrroline-5-carboxyla 97.6 0.00045 9.9E-09 63.9 9.8 68 38-114 1-70 (258)
129 PRK12749 quinate/shikimate deh 97.6 0.00044 9.6E-09 65.2 9.7 94 12-115 106-206 (288)
130 PRK00258 aroE shikimate 5-dehy 97.6 0.00036 7.8E-09 65.5 8.9 93 12-117 104-197 (278)
131 PRK12480 D-lactate dehydrogena 97.6 0.00057 1.2E-08 65.8 10.4 112 35-178 144-256 (330)
132 TIGR02354 thiF_fam2 thiamine b 97.5 0.00081 1.7E-08 60.0 10.5 35 36-71 20-54 (200)
133 cd05213 NAD_bind_Glutamyl_tRNA 97.5 0.00058 1.3E-08 65.1 10.0 104 35-162 176-281 (311)
134 TIGR00507 aroE shikimate 5-deh 97.5 0.00045 9.7E-09 64.5 9.0 91 12-116 99-189 (270)
135 COG0300 DltE Short-chain dehyd 97.5 0.00071 1.5E-08 62.7 9.7 115 35-154 4-142 (265)
136 PLN02166 dTDP-glucose 4,6-dehy 97.5 0.0021 4.5E-08 64.3 13.8 113 33-154 116-233 (436)
137 PRK09599 6-phosphogluconate de 97.5 0.00072 1.6E-08 64.1 9.9 63 38-113 1-67 (301)
138 KOG2711 Glycerol-3-phosphate d 97.4 0.0022 4.7E-08 60.8 12.0 132 33-183 17-175 (372)
139 PLN02350 phosphogluconate dehy 97.4 0.00073 1.6E-08 68.2 8.7 100 36-156 5-109 (493)
140 PRK08291 ectoine utilization p 97.3 0.00096 2.1E-08 64.2 9.1 75 36-114 131-206 (330)
141 COG0569 TrkA K+ transport syst 97.3 0.00018 4E-09 65.4 3.8 68 38-114 1-75 (225)
142 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.0011 2.3E-08 57.9 8.3 33 39-72 1-33 (174)
143 PLN02712 arogenate dehydrogena 97.3 0.0022 4.8E-08 67.3 12.1 67 33-113 48-116 (667)
144 PRK12548 shikimate 5-dehydroge 97.3 0.00086 1.9E-08 63.3 8.2 93 12-115 108-209 (289)
145 PF00899 ThiF: ThiF family; I 97.3 0.0012 2.6E-08 54.8 8.2 73 37-113 2-100 (135)
146 PRK08618 ornithine cyclodeamin 97.3 0.0011 2.4E-08 63.6 9.0 75 36-114 126-201 (325)
147 PLN02256 arogenate dehydrogena 97.3 0.003 6.4E-08 60.1 11.7 67 34-114 33-101 (304)
148 COG1712 Predicted dinucleotide 97.2 0.0028 6.1E-08 56.8 10.0 94 38-157 1-96 (255)
149 PRK08644 thiamine biosynthesis 97.2 0.0016 3.4E-08 58.7 8.6 35 36-71 27-61 (212)
150 TIGR02371 ala_DH_arch alanine 97.2 0.0014 3E-08 62.9 8.8 74 36-114 127-201 (325)
151 PLN02206 UDP-glucuronate decar 97.2 0.0049 1.1E-07 61.7 12.9 111 35-154 117-232 (442)
152 TIGR02356 adenyl_thiF thiazole 97.2 0.0019 4.1E-08 57.7 8.9 75 36-114 20-120 (202)
153 PRK15059 tartronate semialdehy 97.2 0.0016 3.4E-08 61.7 8.8 63 38-114 1-64 (292)
154 TIGR02992 ectoine_eutC ectoine 97.2 0.0018 3.8E-08 62.2 9.3 75 36-114 128-203 (326)
155 PRK11199 tyrA bifunctional cho 97.2 0.0031 6.8E-08 61.7 11.1 53 36-114 97-151 (374)
156 TIGR00873 gnd 6-phosphoglucona 97.2 0.001 2.2E-08 67.0 7.8 98 39-159 1-105 (467)
157 PRK14806 bifunctional cyclohex 97.2 0.0037 8E-08 66.6 12.1 68 38-114 4-72 (735)
158 PRK06407 ornithine cyclodeamin 97.1 0.0021 4.6E-08 61.0 8.9 75 36-114 116-191 (301)
159 PRK15469 ghrA bifunctional gly 97.1 0.0045 9.6E-08 59.1 11.1 116 35-180 134-250 (312)
160 PRK13304 L-aspartate dehydroge 97.1 0.0023 4.9E-08 59.7 8.9 68 37-114 1-70 (265)
161 PLN03209 translocon at the inn 97.1 0.0027 5.7E-08 65.0 10.0 116 36-154 79-207 (576)
162 PRK05479 ketol-acid reductoiso 97.1 0.0024 5.1E-08 61.3 9.0 68 33-113 13-81 (330)
163 PRK09310 aroDE bifunctional 3- 97.1 0.0012 2.6E-08 66.7 7.4 86 12-114 314-399 (477)
164 KOG0409 Predicted dehydrogenas 97.1 0.0011 2.4E-08 61.8 6.5 85 20-116 14-102 (327)
165 cd05312 NAD_bind_1_malic_enz N 97.1 0.0051 1.1E-07 57.4 10.9 127 37-185 25-172 (279)
166 PRK00045 hemA glutamyl-tRNA re 97.1 0.003 6.4E-08 62.9 10.0 109 35-163 180-289 (423)
167 PRK06141 ornithine cyclodeamin 97.1 0.0023 5.1E-08 61.1 8.9 74 36-114 124-198 (314)
168 PF13460 NAD_binding_10: NADH( 97.1 0.0076 1.7E-07 52.1 11.4 90 40-154 1-97 (183)
169 PRK08605 D-lactate dehydrogena 97.1 0.0025 5.4E-08 61.4 8.7 114 35-178 144-258 (332)
170 PLN00203 glutamyl-tRNA reducta 97.1 0.0027 5.9E-08 64.6 9.2 109 37-160 266-375 (519)
171 PF02719 Polysacc_synt_2: Poly 97.0 0.0051 1.1E-07 57.8 10.3 119 40-160 1-138 (293)
172 cd00757 ThiF_MoeB_HesA_family 97.0 0.0029 6.3E-08 57.6 8.5 35 36-71 20-54 (228)
173 PLN02650 dihydroflavonol-4-red 97.0 0.005 1.1E-07 59.3 10.5 118 34-154 2-127 (351)
174 PRK07340 ornithine cyclodeamin 97.0 0.0028 6.1E-08 60.3 8.5 73 36-114 124-197 (304)
175 TIGR02853 spore_dpaA dipicolin 97.0 0.0059 1.3E-07 57.6 10.5 104 34-166 148-253 (287)
176 PF03949 Malic_M: Malic enzyme 97.0 0.0043 9.4E-08 57.1 9.0 125 36-182 24-170 (255)
177 TIGR01692 HIBADH 3-hydroxyisob 97.0 0.0024 5.1E-08 60.2 7.5 60 42-114 1-61 (288)
178 PRK12475 thiamine/molybdopteri 97.0 0.003 6.6E-08 60.9 8.3 74 36-113 23-124 (338)
179 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0024 5.1E-08 63.5 7.8 107 36-163 179-286 (417)
180 PRK07574 formate dehydrogenase 97.0 0.0054 1.2E-07 60.2 10.1 117 34-178 189-306 (385)
181 KOG1502 Flavonol reductase/cin 96.9 0.0057 1.2E-07 58.2 9.8 118 36-159 5-132 (327)
182 TIGR03589 PseB UDP-N-acetylglu 96.9 0.0037 8.1E-08 59.8 8.7 112 37-154 4-124 (324)
183 PF02423 OCD_Mu_crystall: Orni 96.9 0.0022 4.8E-08 61.2 7.1 73 37-114 128-201 (313)
184 PLN02712 arogenate dehydrogena 96.9 0.008 1.7E-07 63.2 11.6 103 36-166 368-472 (667)
185 PRK13243 glyoxylate reductase; 96.9 0.0044 9.5E-08 59.7 8.9 115 35-179 148-263 (333)
186 PRK14982 acyl-ACP reductase; P 96.9 0.0054 1.2E-07 59.1 9.2 97 36-160 154-252 (340)
187 PRK06718 precorrin-2 dehydroge 96.9 0.0081 1.8E-07 53.7 9.8 130 35-195 8-140 (202)
188 CHL00194 ycf39 Ycf39; Provisio 96.9 0.0031 6.8E-08 60.0 7.6 102 38-154 1-109 (317)
189 PRK06719 precorrin-2 dehydroge 96.9 0.0045 9.8E-08 53.0 7.8 67 35-114 11-79 (157)
190 COG0373 HemA Glutamyl-tRNA red 96.9 0.004 8.6E-08 61.2 8.3 73 36-117 177-250 (414)
191 COG1086 Predicted nucleoside-d 96.9 0.014 3E-07 59.1 12.2 122 37-160 250-386 (588)
192 cd00762 NAD_bind_malic_enz NAD 96.9 0.0061 1.3E-07 56.1 8.9 128 37-185 25-173 (254)
193 cd01075 NAD_bind_Leu_Phe_Val_D 96.8 0.0038 8.2E-08 55.7 7.4 87 14-113 6-93 (200)
194 PRK07688 thiamine/molybdopteri 96.8 0.0053 1.1E-07 59.3 8.8 36 36-72 23-58 (339)
195 PF02826 2-Hacid_dh_C: D-isome 96.8 0.011 2.4E-07 51.6 10.1 115 34-178 33-149 (178)
196 PRK06823 ornithine cyclodeamin 96.8 0.0062 1.3E-07 58.2 9.2 74 36-114 127-201 (315)
197 PLN03139 formate dehydrogenase 96.8 0.0096 2.1E-07 58.4 10.4 118 34-179 196-314 (386)
198 PRK13301 putative L-aspartate 96.8 0.0044 9.5E-08 57.3 7.5 93 38-158 3-99 (267)
199 TIGR00465 ilvC ketol-acid redu 96.8 0.0056 1.2E-07 58.5 8.6 64 37-113 3-67 (314)
200 PLN02778 3,5-epimerase/4-reduc 96.8 0.029 6.3E-07 53.0 13.3 93 34-147 6-104 (298)
201 TIGR01470 cysG_Nterm siroheme 96.8 0.0081 1.8E-07 53.8 9.0 128 36-195 8-140 (205)
202 PRK07589 ornithine cyclodeamin 96.8 0.0057 1.2E-07 59.2 8.4 74 36-114 128-202 (346)
203 PRK10675 UDP-galactose-4-epime 96.8 0.021 4.5E-07 54.5 12.3 112 38-154 1-123 (338)
204 TIGR01724 hmd_rel H2-forming N 96.7 0.014 3E-07 55.4 10.6 104 38-165 1-128 (341)
205 PRK08762 molybdopterin biosynt 96.7 0.0057 1.2E-07 59.9 8.5 75 36-114 134-234 (376)
206 PRK13940 glutamyl-tRNA reducta 96.7 0.0034 7.4E-08 62.2 6.9 98 37-160 181-279 (414)
207 PF01118 Semialdhyde_dh: Semia 96.7 0.0026 5.6E-08 51.9 5.1 71 39-113 1-74 (121)
208 PLN02928 oxidoreductase family 96.7 0.0061 1.3E-07 59.1 8.3 127 35-178 157-284 (347)
209 TIGR03466 HpnA hopanoid-associ 96.7 0.0048 1E-07 58.3 7.5 105 38-154 1-112 (328)
210 PRK06046 alanine dehydrogenase 96.7 0.0063 1.4E-07 58.4 8.4 74 36-114 128-202 (326)
211 cd01483 E1_enzyme_family Super 96.7 0.0099 2.1E-07 49.8 8.6 32 39-71 1-32 (143)
212 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0083 1.8E-07 53.0 8.5 73 36-114 27-106 (194)
213 PRK05690 molybdopterin biosynt 96.7 0.009 2E-07 55.0 9.0 36 36-72 31-66 (245)
214 PRK08818 prephenate dehydrogen 96.7 0.0091 2E-07 58.3 9.4 84 36-154 3-88 (370)
215 cd00401 AdoHcyase S-adenosyl-L 96.7 0.012 2.7E-07 58.1 10.4 107 14-156 185-291 (413)
216 PRK08306 dipicolinate synthase 96.7 0.0084 1.8E-07 56.8 9.0 69 34-113 149-218 (296)
217 PRK06199 ornithine cyclodeamin 96.7 0.0071 1.5E-07 59.3 8.7 76 37-114 155-232 (379)
218 PLN02427 UDP-apiose/xylose syn 96.7 0.0042 9.2E-08 60.7 7.1 115 34-155 11-136 (386)
219 PRK14192 bifunctional 5,10-met 96.7 0.0055 1.2E-07 57.6 7.5 91 18-157 143-235 (283)
220 COG2910 Putative NADH-flavin r 96.7 0.002 4.4E-08 56.1 4.0 71 38-116 1-73 (211)
221 TIGR02355 moeB molybdopterin s 96.6 0.01 2.2E-07 54.5 8.9 36 36-72 23-58 (240)
222 PLN02662 cinnamyl-alcohol dehy 96.6 0.041 8.9E-07 52.0 13.4 105 37-144 4-116 (322)
223 TIGR00518 alaDH alanine dehydr 96.6 0.0029 6.3E-08 61.8 5.2 74 35-116 165-241 (370)
224 PRK07424 bifunctional sterol d 96.6 0.01 2.2E-07 58.7 9.0 117 20-144 161-291 (406)
225 PRK08223 hypothetical protein; 96.6 0.012 2.5E-07 55.4 8.9 35 36-71 26-60 (287)
226 PRK00257 erythronate-4-phospha 96.6 0.0081 1.8E-07 58.8 8.1 94 34-155 113-208 (381)
227 PLN02989 cinnamyl-alcohol dehy 96.6 0.06 1.3E-06 51.1 14.0 116 36-154 4-128 (325)
228 TIGR02622 CDP_4_6_dhtase CDP-g 96.6 0.014 3.1E-07 56.2 9.7 113 37-155 4-127 (349)
229 TIGR01777 yfcH conserved hypot 96.6 0.0065 1.4E-07 56.4 7.1 97 40-146 1-102 (292)
230 COG2344 AT-rich DNA-binding pr 96.6 0.0044 9.4E-08 54.0 5.3 120 10-159 59-182 (211)
231 PRK05597 molybdopterin biosynt 96.5 0.011 2.4E-07 57.5 8.6 73 37-113 28-126 (355)
232 PLN00198 anthocyanidin reducta 96.5 0.02 4.4E-07 54.7 10.5 114 37-154 9-130 (338)
233 PRK04148 hypothetical protein; 96.5 0.009 2E-07 49.7 6.9 71 34-112 14-84 (134)
234 PF03435 Saccharop_dh: Sacchar 96.5 0.00075 1.6E-08 66.2 0.4 71 40-115 1-77 (386)
235 PRK08340 glucose-1-dehydrogena 96.5 0.041 9E-07 50.4 12.0 44 38-83 1-45 (259)
236 KOG1683 Hydroxyacyl-CoA dehydr 96.5 0.0066 1.4E-07 58.1 6.7 113 48-178 1-126 (380)
237 PRK06194 hypothetical protein; 96.5 0.07 1.5E-06 49.6 13.5 45 37-83 6-51 (287)
238 cd01492 Aos1_SUMO Ubiquitin ac 96.5 0.016 3.5E-07 51.6 8.7 35 36-71 20-54 (197)
239 PRK15181 Vi polysaccharide bio 96.5 0.046 9.9E-07 52.7 12.6 115 36-154 14-140 (348)
240 PRK07231 fabG 3-ketoacyl-(acyl 96.5 0.032 6.9E-07 50.5 10.9 46 36-83 4-50 (251)
241 PRK15116 sulfur acceptor prote 96.5 0.043 9.3E-07 51.2 11.7 35 36-71 29-63 (268)
242 COG4221 Short-chain alcohol de 96.5 0.025 5.4E-07 51.6 9.8 115 38-155 7-140 (246)
243 PLN02240 UDP-glucose 4-epimera 96.4 0.079 1.7E-06 50.8 14.0 116 36-154 4-131 (352)
244 PRK13394 3-hydroxybutyrate deh 96.4 0.047 1E-06 49.8 11.9 113 37-154 7-143 (262)
245 PLN02494 adenosylhomocysteinas 96.4 0.02 4.3E-07 57.3 9.9 107 14-157 237-344 (477)
246 COG2423 Predicted ornithine cy 96.4 0.012 2.5E-07 56.5 8.0 73 37-113 130-203 (330)
247 PRK12550 shikimate 5-dehydroge 96.4 0.0066 1.4E-07 56.8 6.2 83 12-114 105-187 (272)
248 PRK07102 short chain dehydroge 96.4 0.033 7.1E-07 50.5 10.6 44 38-83 2-46 (243)
249 PLN02858 fructose-bisphosphate 96.4 0.0097 2.1E-07 67.3 8.4 67 37-116 324-391 (1378)
250 PRK14106 murD UDP-N-acetylmura 96.4 0.04 8.6E-07 55.1 12.1 108 36-154 4-114 (450)
251 TIGR01921 DAP-DH diaminopimela 96.4 0.052 1.1E-06 51.9 12.1 138 37-209 3-148 (324)
252 PLN02214 cinnamoyl-CoA reducta 96.4 0.028 6E-07 54.2 10.4 110 36-154 9-126 (342)
253 KOG1201 Hydroxysteroid 17-beta 96.4 0.021 4.5E-07 53.5 9.0 132 34-167 35-191 (300)
254 PRK00048 dihydrodipicolinate r 96.4 0.077 1.7E-06 49.2 12.9 66 37-113 1-68 (257)
255 PRK11908 NAD-dependent epimera 96.4 0.032 7E-07 53.6 10.8 107 37-155 1-118 (347)
256 PRK05600 thiamine biosynthesis 96.4 0.016 3.4E-07 56.7 8.6 34 37-71 41-74 (370)
257 PLN02858 fructose-bisphosphate 96.3 0.014 3.1E-07 66.0 9.3 65 37-114 4-69 (1378)
258 cd01485 E1-1_like Ubiquitin ac 96.3 0.02 4.3E-07 51.0 8.6 34 37-71 19-52 (198)
259 PRK07814 short chain dehydroge 96.3 0.064 1.4E-06 49.3 12.2 115 36-155 9-147 (263)
260 PRK08125 bifunctional UDP-gluc 96.3 0.032 6.8E-07 58.8 11.3 130 13-155 288-432 (660)
261 PLN02896 cinnamyl-alcohol dehy 96.3 0.02 4.3E-07 55.3 9.0 76 35-116 8-90 (353)
262 PRK09424 pntA NAD(P) transhydr 96.3 0.047 1E-06 55.5 11.8 107 34-156 162-287 (509)
263 PRK14194 bifunctional 5,10-met 96.3 0.014 3E-07 55.2 7.5 76 35-157 157-235 (301)
264 PRK03562 glutathione-regulated 96.3 0.053 1.1E-06 56.7 12.5 135 37-203 400-542 (621)
265 PRK12557 H(2)-dependent methyl 96.3 0.034 7.4E-07 53.8 10.2 68 38-114 1-90 (342)
266 PRK03659 glutathione-regulated 96.2 0.064 1.4E-06 55.9 12.8 135 37-203 400-542 (601)
267 PLN02583 cinnamoyl-CoA reducta 96.2 0.14 3.1E-06 48.1 14.2 105 37-144 6-117 (297)
268 PRK05866 short chain dehydroge 96.2 0.1 2.2E-06 49.0 13.2 75 37-116 40-128 (293)
269 PRK12939 short chain dehydroge 96.2 0.077 1.7E-06 47.9 12.0 75 37-116 7-95 (250)
270 cd00755 YgdL_like Family of ac 96.2 0.029 6.3E-07 51.2 9.0 36 36-72 10-45 (231)
271 KOG1205 Predicted dehydrogenas 96.2 0.03 6.5E-07 52.4 9.2 120 36-160 11-155 (282)
272 PRK08643 acetoin reductase; Va 96.2 0.08 1.7E-06 48.2 12.0 113 38-155 3-139 (256)
273 PLN02657 3,8-divinyl protochlo 96.2 0.068 1.5E-06 52.6 12.2 112 34-154 57-181 (390)
274 PRK08213 gluconate 5-dehydroge 96.2 0.042 9.1E-07 50.2 10.2 115 36-155 11-149 (259)
275 PRK06436 glycerate dehydrogena 96.2 0.022 4.8E-07 54.1 8.4 94 35-159 120-216 (303)
276 PRK13302 putative L-aspartate 96.2 0.0094 2E-07 55.8 5.8 69 36-114 5-76 (271)
277 PLN02986 cinnamyl-alcohol dehy 96.2 0.13 2.9E-06 48.7 13.8 105 37-144 5-117 (322)
278 PRK13529 malate dehydrogenase; 96.2 0.056 1.2E-06 55.1 11.5 133 37-185 295-449 (563)
279 PF01073 3Beta_HSD: 3-beta hyd 96.2 0.022 4.8E-07 53.4 8.3 113 41-157 1-117 (280)
280 TIGR00936 ahcY adenosylhomocys 96.2 0.035 7.5E-07 54.8 9.9 92 35-156 193-284 (406)
281 PRK07326 short chain dehydroge 96.2 0.049 1.1E-06 48.9 10.3 45 37-83 6-51 (237)
282 PLN02520 bifunctional 3-dehydr 96.1 0.018 4E-07 58.9 8.2 96 11-116 350-450 (529)
283 KOG2305 3-hydroxyacyl-CoA dehy 96.1 0.0063 1.4E-07 54.7 4.0 106 38-161 4-125 (313)
284 PRK12384 sorbitol-6-phosphate 96.1 0.061 1.3E-06 49.1 10.7 116 38-156 3-142 (259)
285 PRK05476 S-adenosyl-L-homocyst 96.1 0.033 7.2E-07 55.3 9.4 90 36-156 211-301 (425)
286 PRK07832 short chain dehydroge 96.1 0.07 1.5E-06 49.3 11.1 44 38-83 1-45 (272)
287 TIGR01327 PGDH D-3-phosphoglyc 96.1 0.023 5.1E-07 58.1 8.6 95 35-156 136-231 (525)
288 PRK08267 short chain dehydroge 96.1 0.015 3.3E-07 53.2 6.6 39 38-78 2-41 (260)
289 PLN02695 GDP-D-mannose-3',5'-e 96.0 0.016 3.5E-07 56.5 7.0 110 33-154 17-136 (370)
290 PRK07411 hypothetical protein; 96.0 0.028 6E-07 55.4 8.6 35 36-71 37-71 (390)
291 COG1064 AdhP Zn-dependent alco 96.0 0.077 1.7E-06 51.0 11.2 95 34-157 164-262 (339)
292 PTZ00075 Adenosylhomocysteinas 96.0 0.034 7.3E-07 55.8 9.0 92 34-156 251-343 (476)
293 PRK07774 short chain dehydroge 96.0 0.11 2.4E-06 46.9 12.0 46 36-83 5-51 (250)
294 PRK15438 erythronate-4-phospha 96.0 0.025 5.4E-07 55.3 8.0 63 34-114 113-176 (378)
295 TIGR03693 ocin_ThiF_like putat 96.0 0.071 1.5E-06 54.7 11.3 95 20-116 111-215 (637)
296 PRK07878 molybdopterin biosynt 96.0 0.03 6.6E-07 55.2 8.5 35 36-71 41-75 (392)
297 cd01484 E1-2_like Ubiquitin ac 96.0 0.031 6.7E-07 51.1 8.0 33 39-72 1-33 (234)
298 PRK09496 trkA potassium transp 96.0 0.015 3.3E-07 58.0 6.4 67 38-114 1-74 (453)
299 PRK12829 short chain dehydroge 95.9 0.082 1.8E-06 48.2 10.9 40 36-77 10-50 (264)
300 PRK13581 D-3-phosphoglycerate 95.9 0.025 5.4E-07 57.9 8.1 115 35-179 138-253 (526)
301 PLN02819 lysine-ketoglutarate 95.9 0.016 3.5E-07 63.3 6.9 75 36-115 568-658 (1042)
302 PF02254 TrkA_N: TrkA-N domain 95.9 0.013 2.8E-07 46.9 4.9 89 40-154 1-96 (116)
303 PRK07523 gluconate 5-dehydroge 95.9 0.18 4E-06 45.8 13.1 46 36-83 9-55 (255)
304 PRK07069 short chain dehydroge 95.9 0.13 2.9E-06 46.5 12.1 113 39-155 1-138 (251)
305 PLN02780 ketoreductase/ oxidor 95.9 0.078 1.7E-06 50.7 11.0 46 37-84 53-99 (320)
306 PRK11790 D-3-phosphoglycerate 95.9 0.051 1.1E-06 53.9 9.9 116 34-181 148-264 (409)
307 PRK05867 short chain dehydroge 95.9 0.12 2.6E-06 47.1 11.8 113 37-154 9-145 (253)
308 cd01491 Ube1_repeat1 Ubiquitin 95.9 0.027 5.9E-07 53.0 7.6 73 37-113 19-113 (286)
309 PRK12429 3-hydroxybutyrate deh 95.9 0.13 2.7E-06 46.8 11.9 44 38-83 5-49 (258)
310 KOG1014 17 beta-hydroxysteroid 95.9 0.061 1.3E-06 50.7 9.6 115 39-158 50-190 (312)
311 PRK07825 short chain dehydroge 95.9 0.068 1.5E-06 49.3 10.1 114 37-155 5-137 (273)
312 PRK07024 short chain dehydroge 95.9 0.059 1.3E-06 49.3 9.5 41 38-80 3-44 (257)
313 PRK07677 short chain dehydroge 95.9 0.21 4.5E-06 45.4 13.2 112 38-154 2-137 (252)
314 TIGR03206 benzo_BadH 2-hydroxy 95.9 0.085 1.9E-06 47.7 10.5 45 37-83 3-48 (250)
315 TIGR02632 RhaD_aldol-ADH rhamn 95.8 0.094 2E-06 55.4 12.1 54 28-83 405-459 (676)
316 PRK13403 ketol-acid reductoiso 95.8 0.05 1.1E-06 51.9 8.9 68 33-114 12-80 (335)
317 PRK06196 oxidoreductase; Provi 95.8 0.057 1.2E-06 51.2 9.6 114 37-155 26-156 (315)
318 PF00670 AdoHcyase_NAD: S-aden 95.8 0.035 7.6E-07 47.7 7.2 67 36-115 22-88 (162)
319 PRK06949 short chain dehydroge 95.8 0.12 2.6E-06 47.0 11.4 46 36-83 8-54 (258)
320 PRK08339 short chain dehydroge 95.8 0.18 3.8E-06 46.5 12.6 113 38-155 9-144 (263)
321 PRK10538 malonic semialdehyde 95.8 0.036 7.8E-07 50.5 7.9 38 38-77 1-39 (248)
322 PRK01438 murD UDP-N-acetylmura 95.8 0.067 1.4E-06 54.0 10.5 74 37-117 16-90 (480)
323 PRK05562 precorrin-2 dehydroge 95.8 0.056 1.2E-06 49.0 8.8 72 33-114 21-94 (223)
324 PRK06172 short chain dehydroge 95.8 0.13 2.7E-06 46.8 11.4 46 36-83 6-52 (253)
325 cd01489 Uba2_SUMO Ubiquitin ac 95.8 0.041 8.8E-07 52.5 8.2 32 39-71 1-32 (312)
326 PRK05565 fabG 3-ketoacyl-(acyl 95.8 0.23 4.9E-06 44.7 13.0 45 37-83 5-51 (247)
327 PRK12828 short chain dehydroge 95.8 0.037 8E-07 49.5 7.7 44 37-82 7-51 (239)
328 PRK12367 short chain dehydroge 95.8 0.057 1.2E-06 49.5 9.0 99 36-143 13-124 (245)
329 PRK05653 fabG 3-ketoacyl-(acyl 95.8 0.14 3E-06 45.9 11.4 46 36-83 4-50 (246)
330 PRK05650 short chain dehydroge 95.8 0.18 3.8E-06 46.5 12.4 111 38-154 1-135 (270)
331 cd01486 Apg7 Apg7 is an E1-lik 95.8 0.039 8.4E-07 52.1 7.8 32 39-71 1-32 (307)
332 COG0686 Ald Alanine dehydrogen 95.7 0.035 7.5E-07 52.3 7.3 75 34-116 165-242 (371)
333 TIGR00036 dapB dihydrodipicoli 95.7 0.23 4.9E-06 46.3 13.0 72 38-113 2-76 (266)
334 PRK06139 short chain dehydroge 95.7 0.15 3.1E-06 49.1 12.0 75 37-116 7-95 (330)
335 cd01080 NAD_bind_m-THF_DH_Cycl 95.7 0.025 5.5E-07 49.0 6.0 55 35-116 42-98 (168)
336 COG0111 SerA Phosphoglycerate 95.7 0.05 1.1E-06 52.2 8.6 95 36-157 141-236 (324)
337 PRK12826 3-ketoacyl-(acyl-carr 95.7 0.21 4.6E-06 44.9 12.5 46 36-83 5-51 (251)
338 PRK06138 short chain dehydroge 95.7 0.091 2E-06 47.6 10.0 45 36-82 4-49 (252)
339 TIGR03736 PRTRC_ThiF PRTRC sys 95.7 0.047 1E-06 50.2 8.0 37 35-71 9-54 (244)
340 PTZ00317 NADP-dependent malic 95.7 0.041 8.9E-07 56.0 8.3 130 37-185 297-448 (559)
341 PRK13303 L-aspartate dehydroge 95.7 0.092 2E-06 48.9 10.1 85 37-147 1-87 (265)
342 PRK09242 tropinone reductase; 95.7 0.35 7.5E-06 44.1 13.9 48 36-85 8-56 (257)
343 PRK06181 short chain dehydroge 95.7 0.16 3.5E-06 46.4 11.7 74 38-116 2-89 (263)
344 PRK07067 sorbitol dehydrogenas 95.7 0.035 7.7E-07 50.7 7.2 43 37-81 6-49 (257)
345 PRK07478 short chain dehydroge 95.7 0.23 4.9E-06 45.2 12.5 113 37-155 6-143 (254)
346 PRK07890 short chain dehydroge 95.6 0.19 4.2E-06 45.6 12.0 45 37-83 5-50 (258)
347 PF01408 GFO_IDH_MocA: Oxidore 95.6 0.03 6.4E-07 45.0 5.9 67 38-114 1-71 (120)
348 cd01488 Uba3_RUB Ubiquitin act 95.6 0.05 1.1E-06 51.4 8.1 32 39-71 1-32 (291)
349 PRK05875 short chain dehydroge 95.6 0.15 3.3E-06 46.9 11.4 45 37-83 7-52 (276)
350 PRK08085 gluconate 5-dehydroge 95.6 0.24 5.3E-06 45.0 12.5 47 36-84 8-55 (254)
351 PRK05876 short chain dehydroge 95.6 0.27 5.9E-06 45.6 13.1 113 38-155 7-143 (275)
352 PRK07904 short chain dehydroge 95.6 0.18 3.8E-06 46.3 11.6 115 36-154 7-145 (253)
353 PLN03129 NADP-dependent malic 95.6 0.026 5.7E-07 57.6 6.5 125 37-185 321-468 (581)
354 PRK05855 short chain dehydroge 95.6 0.13 2.9E-06 52.5 11.9 115 36-155 314-452 (582)
355 PLN02306 hydroxypyruvate reduc 95.6 0.08 1.7E-06 52.0 9.7 127 35-178 163-294 (386)
356 PRK08251 short chain dehydroge 95.6 0.24 5.1E-06 44.8 12.2 76 38-116 3-92 (248)
357 PRK12827 short chain dehydroge 95.6 0.33 7.2E-06 43.6 13.2 34 37-72 6-40 (249)
358 PRK07060 short chain dehydroge 95.6 0.041 9E-07 49.6 7.2 39 36-76 8-47 (245)
359 TIGR02415 23BDH acetoin reduct 95.5 0.064 1.4E-06 48.7 8.5 111 39-154 2-136 (254)
360 PRK06182 short chain dehydroge 95.5 0.056 1.2E-06 49.9 8.1 38 37-76 3-41 (273)
361 PRK08862 short chain dehydroge 95.5 0.32 6.9E-06 43.9 12.8 114 37-155 5-144 (227)
362 PRK09496 trkA potassium transp 95.5 0.037 8.1E-07 55.2 7.3 70 36-114 230-306 (453)
363 PRK06198 short chain dehydroge 95.5 0.21 4.5E-06 45.5 11.7 114 37-155 6-144 (260)
364 PRK02472 murD UDP-N-acetylmura 95.5 0.14 3E-06 51.1 11.4 75 36-117 4-80 (447)
365 COG0451 WcaG Nucleoside-diphos 95.5 0.056 1.2E-06 50.6 8.0 99 38-143 1-105 (314)
366 PLN02572 UDP-sulfoquinovose sy 95.5 0.2 4.3E-06 50.2 12.3 118 34-153 44-189 (442)
367 PRK08265 short chain dehydroge 95.5 0.19 4.1E-06 46.1 11.3 41 37-79 6-47 (261)
368 PRK07109 short chain dehydroge 95.5 0.33 7.1E-06 46.6 13.4 113 37-155 8-144 (334)
369 PRK07035 short chain dehydroge 95.4 0.19 4.2E-06 45.5 11.3 47 36-84 7-54 (252)
370 PRK07454 short chain dehydroge 95.4 0.3 6.5E-06 44.0 12.4 44 37-82 6-50 (241)
371 PRK05717 oxidoreductase; Valid 95.4 0.032 7E-07 50.9 6.1 38 37-76 10-48 (255)
372 COG1063 Tdh Threonine dehydrog 95.4 0.15 3.2E-06 49.5 10.9 38 38-76 170-207 (350)
373 TIGR01181 dTDP_gluc_dehyt dTDP 95.4 0.057 1.2E-06 50.5 7.9 113 39-154 1-124 (317)
374 PRK07806 short chain dehydroge 95.4 0.17 3.6E-06 45.8 10.7 45 37-83 6-52 (248)
375 PRK08277 D-mannonate oxidoredu 95.4 0.43 9.3E-06 44.1 13.6 46 36-83 9-55 (278)
376 PRK07666 fabG 3-ketoacyl-(acyl 95.4 0.32 6.9E-06 43.7 12.4 75 37-116 7-95 (239)
377 PRK07453 protochlorophyllide o 95.4 0.32 6.9E-06 46.2 12.9 45 36-82 5-50 (322)
378 cd05211 NAD_bind_Glu_Leu_Phe_V 95.3 0.04 8.6E-07 49.8 6.1 54 15-72 4-57 (217)
379 PRK01710 murD UDP-N-acetylmura 95.3 0.15 3.2E-06 51.3 10.8 93 37-137 14-108 (458)
380 PRK14851 hypothetical protein; 95.3 0.065 1.4E-06 56.4 8.4 35 36-71 42-76 (679)
381 PRK08217 fabG 3-ketoacyl-(acyl 95.3 0.32 6.9E-06 43.8 12.1 46 36-83 4-50 (253)
382 PRK06444 prephenate dehydrogen 95.3 0.056 1.2E-06 48.1 6.8 27 38-66 1-28 (197)
383 PRK07877 hypothetical protein; 95.3 0.06 1.3E-06 56.9 8.0 34 37-71 107-140 (722)
384 PRK09135 pteridine reductase; 95.3 0.19 4.2E-06 45.1 10.6 45 37-83 6-52 (249)
385 PRK07062 short chain dehydroge 95.3 0.27 5.9E-06 45.0 11.7 114 38-155 9-146 (265)
386 PLN02358 glyceraldehyde-3-phos 95.2 0.17 3.7E-06 48.8 10.4 39 34-72 2-40 (338)
387 PRK09186 flagellin modificatio 95.2 0.37 8E-06 43.7 12.5 45 37-83 4-49 (256)
388 PRK06197 short chain dehydroge 95.2 0.22 4.8E-06 46.9 11.3 116 36-155 15-152 (306)
389 PRK05872 short chain dehydroge 95.2 0.23 5E-06 46.6 11.3 45 36-82 8-53 (296)
390 PRK08324 short chain dehydroge 95.2 0.18 3.9E-06 53.4 11.6 113 36-154 421-557 (681)
391 PRK09072 short chain dehydroge 95.2 0.24 5.2E-06 45.3 11.1 75 36-116 4-91 (263)
392 PRK02705 murD UDP-N-acetylmura 95.2 0.2 4.3E-06 50.2 11.3 117 39-164 2-127 (459)
393 PRK06125 short chain dehydroge 95.2 0.28 6E-06 44.8 11.4 113 37-154 7-139 (259)
394 PRK12936 3-ketoacyl-(acyl-carr 95.2 0.12 2.6E-06 46.5 8.9 40 36-77 5-45 (245)
395 PLN02253 xanthoxin dehydrogena 95.2 0.1 2.2E-06 48.4 8.5 41 37-79 18-59 (280)
396 PF01113 DapB_N: Dihydrodipico 95.2 0.029 6.2E-07 46.0 4.3 73 38-113 1-75 (124)
397 PRK05993 short chain dehydroge 95.1 0.059 1.3E-06 50.1 6.8 37 38-76 5-42 (277)
398 cd05191 NAD_bind_amino_acid_DH 95.1 0.079 1.7E-06 40.3 6.3 35 35-70 21-55 (86)
399 PRK08945 putative oxoacyl-(acy 95.1 0.38 8.3E-06 43.5 12.0 47 36-84 11-58 (247)
400 PRK06914 short chain dehydroge 95.1 0.28 6E-06 45.3 11.3 43 38-82 4-47 (280)
401 PF03059 NAS: Nicotianamine sy 95.1 0.12 2.7E-06 48.2 8.8 105 36-153 120-229 (276)
402 COG1052 LdhA Lactate dehydroge 95.1 0.11 2.5E-06 49.7 8.8 116 35-180 144-260 (324)
403 PRK10669 putative cation:proto 95.1 0.047 1E-06 56.3 6.6 126 38-199 418-551 (558)
404 PRK09987 dTDP-4-dehydrorhamnos 95.1 0.087 1.9E-06 49.7 8.0 97 38-154 1-103 (299)
405 PRK13535 erythrose 4-phosphate 95.1 0.054 1.2E-06 52.1 6.5 36 37-72 1-36 (336)
406 PRK07831 short chain dehydroge 95.1 0.4 8.7E-06 43.8 12.2 46 37-84 17-64 (262)
407 PRK06940 short chain dehydroge 95.0 0.2 4.4E-06 46.5 10.2 72 39-116 4-87 (275)
408 PRK00141 murD UDP-N-acetylmura 95.0 0.21 4.6E-06 50.5 11.0 93 36-139 14-107 (473)
409 COG1648 CysG Siroheme synthase 95.0 0.24 5.2E-06 44.5 10.2 127 36-194 11-142 (210)
410 PRK08410 2-hydroxyacid dehydro 95.0 0.077 1.7E-06 50.6 7.4 92 34-156 142-234 (311)
411 PRK00421 murC UDP-N-acetylmura 95.0 0.21 4.5E-06 50.2 10.9 72 36-117 6-78 (461)
412 TIGR01214 rmlD dTDP-4-dehydror 95.0 0.091 2E-06 48.7 7.8 93 39-154 1-99 (287)
413 PRK05599 hypothetical protein; 95.0 0.19 4.2E-06 45.7 9.8 115 38-157 1-139 (246)
414 PRK06180 short chain dehydroge 95.0 0.46 1E-05 43.9 12.6 38 37-76 4-42 (277)
415 PLN00141 Tic62-NAD(P)-related 95.0 0.037 8E-07 50.7 5.0 74 34-116 14-96 (251)
416 TIGR01832 kduD 2-deoxy-D-gluco 95.0 0.22 4.8E-06 45.0 10.1 35 36-72 4-39 (248)
417 PRK09291 short chain dehydroge 95.0 0.22 4.8E-06 45.2 10.2 74 38-116 3-84 (257)
418 PRK09134 short chain dehydroge 95.0 0.26 5.5E-06 45.0 10.6 47 34-82 6-54 (258)
419 PF07991 IlvN: Acetohydroxy ac 95.0 0.071 1.5E-06 45.7 6.2 66 36-113 3-68 (165)
420 COG4007 Predicted dehydrogenas 95.0 0.3 6.5E-06 44.9 10.5 88 37-143 1-109 (340)
421 PRK14852 hypothetical protein; 94.9 0.095 2.1E-06 56.8 8.3 35 36-71 331-365 (989)
422 PRK06482 short chain dehydroge 94.9 0.21 4.5E-06 46.1 9.8 37 38-76 3-40 (276)
423 cd01076 NAD_bind_1_Glu_DH NAD( 94.9 0.098 2.1E-06 47.6 7.3 54 12-70 9-63 (227)
424 PRK14175 bifunctional 5,10-met 94.9 0.062 1.4E-06 50.5 6.2 55 35-116 156-212 (286)
425 PRK06487 glycerate dehydrogena 94.8 0.13 2.8E-06 49.2 8.4 110 35-179 146-256 (317)
426 PRK06598 aspartate-semialdehyd 94.8 0.1 2.2E-06 50.9 7.5 71 37-114 1-74 (369)
427 PRK08589 short chain dehydroge 94.8 0.34 7.3E-06 44.8 10.9 111 37-155 6-141 (272)
428 PRK15409 bifunctional glyoxyla 94.8 0.16 3.5E-06 48.8 8.9 115 35-179 143-259 (323)
429 PRK06932 glycerate dehydrogena 94.7 0.13 2.7E-06 49.3 8.1 110 35-178 145-255 (314)
430 PRK06153 hypothetical protein; 94.7 0.037 8E-07 54.0 4.4 35 37-72 176-210 (393)
431 COG4091 Predicted homoserine d 94.7 0.47 1E-05 45.6 11.5 93 22-117 5-113 (438)
432 PRK12937 short chain dehydroge 94.7 0.65 1.4E-05 41.7 12.5 37 34-72 2-39 (245)
433 PF13241 NAD_binding_7: Putati 94.7 0.28 6E-06 38.7 8.7 64 35-114 5-69 (103)
434 PRK08328 hypothetical protein; 94.7 0.047 1E-06 49.8 4.8 36 37-73 27-62 (231)
435 PF00185 OTCace: Aspartate/orn 94.7 0.25 5.5E-06 42.3 9.1 74 37-113 2-81 (158)
436 TIGR03215 ac_ald_DH_ac acetald 94.7 0.56 1.2E-05 44.2 12.1 69 38-114 2-73 (285)
437 PRK11150 rfaD ADP-L-glycero-D- 94.7 0.2 4.3E-06 47.1 9.2 103 40-154 2-115 (308)
438 PRK08703 short chain dehydroge 94.6 0.61 1.3E-05 41.9 12.1 45 37-83 6-51 (239)
439 TIGR00745 apbA_panE 2-dehydrop 94.6 0.16 3.5E-06 47.3 8.5 93 48-163 2-102 (293)
440 PRK04690 murD UDP-N-acetylmura 94.6 0.24 5.1E-06 50.1 10.1 93 37-137 8-100 (468)
441 PRK04308 murD UDP-N-acetylmura 94.6 0.35 7.7E-06 48.3 11.3 74 37-117 5-79 (445)
442 PRK07097 gluconate 5-dehydroge 94.6 0.56 1.2E-05 43.0 11.9 45 37-83 10-55 (265)
443 PLN02968 Probable N-acetyl-gam 94.6 0.067 1.5E-06 52.5 5.9 74 35-114 36-113 (381)
444 PRK07074 short chain dehydroge 94.6 0.089 1.9E-06 47.9 6.5 43 38-82 3-46 (257)
445 PRK06101 short chain dehydroge 94.6 0.12 2.5E-06 46.9 7.1 38 38-77 2-40 (240)
446 PRK07494 2-octaprenyl-6-methox 94.6 0.054 1.2E-06 52.8 5.3 39 32-72 2-40 (388)
447 PRK07576 short chain dehydroge 94.5 0.93 2E-05 41.6 13.2 45 37-83 9-54 (264)
448 PF00070 Pyr_redox: Pyridine n 94.5 0.09 2E-06 39.3 5.2 35 39-75 1-35 (80)
449 PRK06179 short chain dehydroge 94.5 0.099 2.2E-06 48.1 6.6 37 37-75 4-41 (270)
450 PTZ00245 ubiquitin activating 94.5 0.26 5.6E-06 45.5 9.0 73 37-113 26-117 (287)
451 TIGR01179 galE UDP-glucose-4-e 94.5 0.38 8.2E-06 45.1 10.7 109 39-154 1-120 (328)
452 PRK08219 short chain dehydroge 94.5 0.17 3.6E-06 45.0 7.8 37 37-76 3-40 (227)
453 TIGR01745 asd_gamma aspartate- 94.4 0.11 2.3E-06 50.6 6.8 69 38-114 1-73 (366)
454 PRK06500 short chain dehydroge 94.4 0.77 1.7E-05 41.3 12.3 38 37-76 6-44 (249)
455 PRK08263 short chain dehydroge 94.4 0.39 8.4E-06 44.4 10.4 37 38-76 4-41 (275)
456 COG3967 DltE Short-chain dehyd 94.4 0.32 7E-06 43.4 9.0 114 37-156 5-140 (245)
457 PRK05865 hypothetical protein; 94.4 0.18 3.8E-06 54.5 8.9 103 38-157 1-105 (854)
458 COG0771 MurD UDP-N-acetylmuram 94.4 0.3 6.5E-06 48.8 9.9 125 37-170 7-137 (448)
459 PRK00711 D-amino acid dehydrog 94.3 0.065 1.4E-06 52.7 5.3 34 38-73 1-34 (416)
460 PRK06113 7-alpha-hydroxysteroi 94.3 0.59 1.3E-05 42.5 11.2 48 35-84 9-57 (255)
461 TIGR01963 PHB_DH 3-hydroxybuty 94.3 0.84 1.8E-05 41.2 12.2 74 38-116 2-89 (255)
462 TIGR01087 murD UDP-N-acetylmur 94.3 0.35 7.7E-06 48.1 10.5 91 39-136 1-92 (433)
463 COG1023 Gnd Predicted 6-phosph 94.2 0.057 1.2E-06 49.1 4.1 38 38-77 1-38 (300)
464 PLN02686 cinnamoyl-CoA reducta 94.2 0.2 4.4E-06 48.7 8.4 107 35-144 51-169 (367)
465 PRK12746 short chain dehydroge 94.2 0.94 2E-05 41.0 12.3 44 37-82 6-51 (254)
466 PRK07856 short chain dehydroge 94.2 0.095 2.1E-06 47.7 5.7 37 36-74 5-42 (252)
467 PRK08628 short chain dehydroge 94.2 1 2.2E-05 40.9 12.5 44 37-83 7-51 (258)
468 PRK11889 flhF flagellar biosyn 94.2 1.9 4.1E-05 42.6 14.7 132 35-184 239-389 (436)
469 PRK06935 2-deoxy-D-gluconate 3 94.1 1 2.2E-05 41.0 12.5 39 36-77 14-53 (258)
470 PRK08264 short chain dehydroge 94.1 0.89 1.9E-05 40.7 11.9 40 36-76 5-45 (238)
471 PRK12825 fabG 3-ketoacyl-(acyl 94.1 0.94 2E-05 40.4 12.0 34 37-72 6-40 (249)
472 PRK08993 2-deoxy-D-gluconate 3 94.1 2.1 4.5E-05 38.9 14.4 113 36-155 9-145 (253)
473 PRK12409 D-amino acid dehydrog 94.1 0.077 1.7E-06 52.2 5.2 33 38-72 2-34 (410)
474 PLN02260 probable rhamnose bio 94.0 0.18 4E-06 53.1 8.2 119 36-154 5-131 (668)
475 PRK08300 acetaldehyde dehydrog 94.0 0.14 3E-06 48.6 6.5 71 36-114 3-79 (302)
476 PRK04207 glyceraldehyde-3-phos 94.0 0.18 3.9E-06 48.8 7.4 78 37-114 1-87 (341)
477 PRK06924 short chain dehydroge 94.0 0.095 2.1E-06 47.5 5.2 33 38-72 2-35 (251)
478 PRK12743 oxidoreductase; Provi 93.9 0.75 1.6E-05 41.9 11.2 113 38-155 3-140 (256)
479 TIGR02197 heptose_epim ADP-L-g 93.9 0.34 7.3E-06 45.4 9.1 107 40-154 1-113 (314)
480 PRK06701 short chain dehydroge 93.9 0.8 1.7E-05 42.9 11.6 35 37-73 46-81 (290)
481 smart00859 Semialdhyde_dh Semi 93.9 0.31 6.8E-06 39.4 7.7 33 39-72 1-35 (122)
482 TIGR01408 Ube1 ubiquitin-activ 93.9 0.61 1.3E-05 51.4 12.0 73 37-113 24-118 (1008)
483 PRK07201 short chain dehydroge 93.9 0.87 1.9E-05 47.6 12.9 103 38-145 1-116 (657)
484 PRK14179 bifunctional 5,10-met 93.9 0.22 4.8E-06 46.8 7.5 75 35-156 156-233 (284)
485 PRK06128 oxidoreductase; Provi 93.9 1.5 3.2E-05 41.2 13.4 34 38-73 56-90 (300)
486 PF13380 CoA_binding_2: CoA bi 93.9 1.3 2.9E-05 35.7 11.3 106 38-181 1-111 (116)
487 PRK12747 short chain dehydroge 93.8 1.4 2.9E-05 40.0 12.7 45 37-83 4-50 (252)
488 PRK08226 short chain dehydroge 93.8 0.7 1.5E-05 42.1 10.8 35 37-73 6-41 (263)
489 PRK06847 hypothetical protein; 93.8 0.098 2.1E-06 50.6 5.3 36 36-73 3-38 (375)
490 PRK06124 gluconate 5-dehydroge 93.8 0.19 4.2E-06 45.7 6.9 47 35-83 9-56 (256)
491 PRK08163 salicylate hydroxylas 93.8 0.097 2.1E-06 51.1 5.2 36 36-73 3-38 (396)
492 PRK06753 hypothetical protein; 93.8 0.09 2E-06 50.9 5.0 34 38-73 1-34 (373)
493 PRK12823 benD 1,6-dihydroxycyc 93.7 1.7 3.7E-05 39.5 13.1 34 37-72 8-42 (260)
494 TIGR01472 gmd GDP-mannose 4,6- 93.7 0.62 1.3E-05 44.6 10.6 106 38-145 1-120 (343)
495 PRK06114 short chain dehydroge 93.7 0.41 8.8E-06 43.6 8.9 46 36-83 7-54 (254)
496 PF00106 adh_short: short chai 93.7 0.65 1.4E-05 39.0 9.6 114 39-157 2-137 (167)
497 PRK06728 aspartate-semialdehyd 93.7 0.23 4.9E-06 48.1 7.4 72 35-114 3-77 (347)
498 PRK03369 murD UDP-N-acetylmura 93.6 0.56 1.2E-05 47.6 10.6 89 38-138 13-102 (488)
499 TIGR01746 Thioester-redct thio 93.6 1 2.2E-05 42.9 11.9 108 39-148 1-130 (367)
500 PRK08278 short chain dehydroge 93.6 1.7 3.6E-05 40.2 13.0 35 37-73 6-41 (273)
No 1
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=1.6e-74 Score=552.83 Aligned_cols=349 Identities=82% Similarity=1.247 Sum_probs=320.0
Q ss_pred CCCCCCCCCCCCCccchhhhhhccccCCCCCCCC-CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760 1 MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPT-KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~ 79 (350)
|.|..+.+++++|+.+..+-+++|+.++-. +|. ++++||+|||||+||+++++.|+..++.+||+|+|++++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~m~~~~~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a 79 (350)
T PLN02602 1 MKKSSSASSLGPGGLDLSQAFFKPIHNSSP-PSPTRRHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEM 79 (350)
T ss_pred Ccccccccccccchhhhhhhhhhccccccc-ccccCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHH
Confidence 567888899999999977777766655542 232 233799999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760 80 LDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159 (350)
Q Consensus 80 ~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~ 159 (350)
+||+|+.++....++..++++++++|||+||+++|.|++||++|.|++.+|+++++++++.|+++||++|+|++|||+|+
T Consensus 80 ~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv 159 (350)
T PLN02602 80 LDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV 159 (350)
T ss_pred HHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH
Confidence 99999986554467776678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccC
Q 018760 160 LTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239 (350)
Q Consensus 160 ~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~ 239 (350)
+|+++++++|+|++||||+||.||++|+++++|+++++++++|+++||||||++++|+||+++|+|+|+.+++......+
T Consensus 160 ~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~ 239 (350)
T PLN02602 160 LTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY 239 (350)
T ss_pred HHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875432235
Q ss_pred CHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceE
Q 018760 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVL 319 (350)
Q Consensus 240 ~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~ 319 (350)
+++.++++.+++++++++|++.||+++|++|.++++++++|++|++.++|++++++|+||+++.++|+|+||++|++||+
T Consensus 240 ~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~ 319 (350)
T PLN02602 240 EKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVL 319 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeE
Confidence 56678899999999999999999999999999999999999999999999999999999993258999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760 320 GVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350 (350)
Q Consensus 320 ~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~ 350 (350)
++.+++|+++|+++|++|++.|++.++++++
T Consensus 320 ~i~~l~L~~~E~~~l~~sa~~l~~~~~~~~~ 350 (350)
T PLN02602 320 GVVNVHLTDEEAERLRKSAKTLWEVQSQLGL 350 (350)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998864
No 2
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.2e-74 Score=515.28 Aligned_cols=316 Identities=58% Similarity=0.978 Sum_probs=305.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
..+..||+|+|+|+||.+.|..++.+++.+|++|+|.+++++++.+|||+|+.+|...++|..+.||.+.+++++||+++
T Consensus 17 ~~~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTA 96 (332)
T KOG1495|consen 17 EFKHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITA 96 (332)
T ss_pred cccCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEec
Confidence 34477999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD 193 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~ 193 (350)
|..+++|++|++++++|+.+++.+.+.+.+|+||++++++|||+|+|||+.||.+|+|++||||.||+||++||++++++
T Consensus 97 Garq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~ 176 (332)
T KOG1495|consen 97 GARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGN 176 (332)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760 194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273 (350)
Q Consensus 194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~ 273 (350)
+|+++|+++++|++||||++.||.||.+.|.|.++.++.++-....++|.|+++.+++.+.+|||++.||+|+|+++.+.
T Consensus 177 ~Lg~~pss~hgwIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsv 256 (332)
T KOG1495|consen 177 RLGVHPSSCHGWIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSV 256 (332)
T ss_pred HhCCCcccceEEEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999998877655778999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350 (350)
Q Consensus 274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~ 350 (350)
++++++|++|++.++|+++...|.|||+ +|+|+|+||+++++|+..+...+|+++|.++|++||+.|.+.+++|++
T Consensus 257 a~l~~ail~n~~~i~~Vst~~kg~~gI~-~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l~~ 332 (332)
T KOG1495|consen 257 ADLAQAILRNLRRIHPVSTMVKGLYGID-DDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSLGL 332 (332)
T ss_pred HHHHHHHHhCcCceeeeeeccccccCCC-CceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999997 699999999999999999999999999999999999999999999875
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.2e-72 Score=525.83 Aligned_cols=305 Identities=43% Similarity=0.724 Sum_probs=288.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
+||+|||||.||+++|+.|+..++..|++|+|++++++++.++||+|+.++. ...++..+.++++++|||+||+++|.|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 5999999999999999999888887799999999999999999999998654 345666545689999999999999999
Q ss_pred cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760 117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~ 196 (350)
|+|||+|+||+..|++|+++++++|.++|||++++++|||+|++||++++.+|+|++||||+||.||++|++++||++++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~ 160 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCC-cchHHHHHHHH
Q 018760 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY-TSWAIGYSAAN 275 (350)
Q Consensus 197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~-~~~~~a~a~~~ 275 (350)
++|++|+++|+|+||+++||+||+++|+|+|+.++++. +++++++++.+++++++++|++.||+ ++||+|.++++
T Consensus 161 v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~----~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~ 236 (313)
T COG0039 161 VSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE----DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALAR 236 (313)
T ss_pred CChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHH
Confidence 99999999999999999999999999999999998753 34667889999999999999999988 99999999999
Q ss_pred HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
++++|++|+++++|++++++|+||+ +++|||+||++|++|++.+.+++|+++|+++|++|++.+|+.++.+
T Consensus 237 ~~~ail~d~~~vl~~s~~l~G~yg~--~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~ 307 (313)
T COG0039 237 MVEAILRDEKRVLPVSVYLDGEYGV--EDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELV 307 (313)
T ss_pred HHHHHHcCCCceEEEEEeecCccCc--CCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999995 4899999999999999999999999999999999999999999875
No 4
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.6e-71 Score=526.49 Aligned_cols=311 Identities=56% Similarity=0.903 Sum_probs=291.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
+.+||+|||||.||+++++.|+..++.+||+|+|++++++++.++||+|+.++....++..++||++++|||+||+++|.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~ 81 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA 81 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence 35699999999999999999999999999999999999999999999999865544578877899999999999999999
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL 195 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l 195 (350)
+++||++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++++++|+|++||||+||.||+.|+++++|+++
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l 161 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERL 161 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHH
Q 018760 196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275 (350)
Q Consensus 196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ 275 (350)
++++++|+++||||||++++|+||+++|+|+|+.+++.......++++++++.+++++++++|++.||+++|++|.++++
T Consensus 162 ~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ 241 (312)
T cd05293 162 GVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVAD 241 (312)
T ss_pred CCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999988864321123345678999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~ 347 (350)
++++|++|++.++|++++++|.||++ ++++||+||++|++|++++.+++|+++|+++|++|++.|++.+++
T Consensus 242 ii~ail~d~~~~~~vsv~~~g~yg~~-~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~~~ 312 (312)
T cd05293 242 LVDAILRNTGRVHSVSTLVKGLHGIE-DEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ 312 (312)
T ss_pred HHHHHHcCCCeEEEEEEEeCCccCCC-CCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999997 599999999999999999999999999999999999999998763
No 5
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.1e-71 Score=521.60 Aligned_cols=302 Identities=36% Similarity=0.604 Sum_probs=283.4
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC--CceEEEcCCccccCCCCEEEEecCCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP--RTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~--~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
||+|||||.||+++|+.|+.+++++||+|+|++++++++.++||+|..++.. ..++. +++|++++|||+||+++|.|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECCHHHhCCCCEEEECCCCC
Confidence 8999999999999999999999999999999999999999999999876643 34666 56899999999999999999
Q ss_pred cCcccc--HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760 117 QIAGES--RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH 194 (350)
Q Consensus 117 ~~~g~~--r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~ 194 (350)
++||++ |+|++..|+++++++++.+.+++|++++|++|||+|+||+++++.+|+|++||||+||.||++|+++++|++
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 159 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK 159 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence 999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHH
Q 018760 195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274 (350)
Q Consensus 195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~ 274 (350)
++++|++|+++||||||++++|+||+++|+|+|+.+++.... .+++.++++.+++++++++|++.||+++|++|.+++
T Consensus 160 l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~--~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~ 237 (307)
T cd05290 160 YGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG--KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSAS 237 (307)
T ss_pred hCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHH
Confidence 999999999999999999999999999999999988764211 123457889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ 345 (350)
Q Consensus 275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~ 345 (350)
+++++|++|++.++|++++++|+||. +++|+|+||++|++||+++.+++|+++|+++|++|++.|++.+
T Consensus 238 ~ii~ail~d~~~v~~vsv~~~G~yg~--~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 238 RLIKAILLDERSILPVCTLLSGEYGL--SDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred HHHHHHHhCCCeEEEEEEeeCCccCC--CCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999995 4899999999999999999999999999999999999999875
No 6
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-70 Score=518.08 Aligned_cols=312 Identities=40% Similarity=0.758 Sum_probs=295.5
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~ 112 (350)
+++.++||+|||||.||+++++.|+..++++||+|+|++++++++.++|++|+.++.....+. ++++++++|||+||++
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~~~~~~~~~adivIit 80 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-AGDYSDCKDADLVVIT 80 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-eCCHHHhCCCCEEEEe
Confidence 356678999999999999999999999999999999999999999999999998654345555 4678999999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHH
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA 192 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la 192 (350)
+|.|++||++|.|++..|+++++++++.+.+++|++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++.+|
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la 160 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLS 160 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760 193 DHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272 (350)
Q Consensus 193 ~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a 272 (350)
++++++|++|+++||||||++++|+||+++|+|+|+.+++.+. .|+++++++++.++++++++++++.||+++|++|.+
T Consensus 161 ~~l~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~ 239 (315)
T PRK00066 161 EKLDVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMA 239 (315)
T ss_pred HHhCCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHH
Confidence 9999999999999999999999999999999999999987654 478888899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
+++++++++++++.++|++++.+|+||. +++|||+||++|++||+++.+++|+++|+++|++|+++|++.++++
T Consensus 240 ~~~i~~ail~~~~~v~~~sv~~~g~yg~--~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 240 LARITKAILNNENAVLPVSAYLEGQYGE--EDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHcCCCeEEEEEEEeccccCC--CCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999995 4899999999999999999999999999999999999999999876
No 7
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.3e-68 Score=504.12 Aligned_cols=298 Identities=49% Similarity=0.835 Sum_probs=278.8
Q ss_pred EEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCCcCcc
Q 018760 42 VIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGARQIAG 120 (350)
Q Consensus 42 IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~~~~g 120 (350)
|||+|.||+++++.|+..++++||+|+|++++++++.++||+|+..+.. ..++. ++++++++|||+||+++|.|++||
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~daDivVitag~~rk~g 79 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYSDCKDADLVVITAGAPQKPG 79 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHHHHCCCCEEEECCCCCCCCC
Confidence 6899999999999999999999999999999999999999999986542 34565 467899999999999999999999
Q ss_pred ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCc
Q 018760 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQ 200 (350)
Q Consensus 121 ~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~ 200 (350)
++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++++++++|++||||+||.||+.|+++++|++++++|+
T Consensus 80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~ 159 (299)
T TIGR01771 80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ 159 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHH
Q 018760 201 DVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSI 280 (350)
Q Consensus 201 ~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai 280 (350)
+|+++||||||++++|+||+++|+|+|+.+++.+.. .+++++++++.+++++++++|++.||+++|++|.++++++++|
T Consensus 160 ~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ai 238 (299)
T TIGR01771 160 SVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAI 238 (299)
T ss_pred eEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764311 1124457789999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHH
Q 018760 281 IRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE 343 (350)
Q Consensus 281 ~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~ 343 (350)
++|++.++|+|++.+|+||++ ++|||+||+||++|++++.+++|+++|+++|++|++.||+
T Consensus 239 l~d~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 239 LHDENRVLPVSAYLDGEYGIK--DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HcCCCcEEEEEEEecccCCCC--CEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999985 7999999999999999999999999999999999999974
No 8
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=2.4e-67 Score=498.80 Aligned_cols=304 Identities=42% Similarity=0.727 Sum_probs=285.0
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
+||+|||+|.+|+++++.|+..++..+|+|+|++++++++.++|++|...+.. ..++. +.+++++++||+||+++|.|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-AGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-cCCHHHhCCCCEEEEccCCC
Confidence 48999999999999999999999888999999999999999999999875332 33444 45678899999999999999
Q ss_pred cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760 117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~ 196 (350)
+++|++|.+++.+|+++++++++.|+++||++++|++|||+|++|+++++++|+|++||||+||.||++|+++++|++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~ 159 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN 159 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHH
Q 018760 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276 (350)
Q Consensus 197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~i 276 (350)
++|++|+++|||+||++++|+||+++|+|+|+.+++.+. .+.+++++++.+++++++++|++.||+++|++|.+++++
T Consensus 160 v~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~ 237 (306)
T cd05291 160 VDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARI 237 (306)
T ss_pred CCcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999887553 344567889999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 018760 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS 346 (350)
Q Consensus 277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~ 346 (350)
+++|++|++.++|++++.+|+||. +++|||+||++|++||+++.+++|+++|+++|++|+++|++.++
T Consensus 238 ~~ail~~~~~v~~~s~~~~g~yg~--~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 238 VKAILNDENAILPVSAYLDGEYGE--KDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred HHHHHcCCCEEEEEEEEeccccCC--CCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999995 48999999999999999999999999999999999999998875
No 9
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.5e-67 Score=500.44 Aligned_cols=305 Identities=22% Similarity=0.343 Sum_probs=280.6
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhh-cCCCceEEEcCCccccCC
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAG 105 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~ 105 (350)
+++.||+|||| |.||+++++.|+..++++ ||+|+|+++ +++++.++||+|+.. +....++. +.++++++|
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~d 79 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEEAFKD 79 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHHHhCC
Confidence 46889999999 999999999999999998 999999965 669999999999973 32334554 467899999
Q ss_pred CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCcc
Q 018760 106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLD 183 (350)
Q Consensus 106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~ld 183 (350)
||+||+++|.|++||++|.|++..|++++++++++|.+++| ++++|++|||+|++|+++++.+ |+|++||||+ |.||
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 99999999999999999999999999999999999999998 9999999999999999999999 9999999999 9999
Q ss_pred HHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc
Q 018760 184 SSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262 (350)
Q Consensus 184 ~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k 262 (350)
++|+++++|++++++|++|+ .+||||||++++|+||+++|+|+|+.+++.+.. | .++++.+++++++++|++.|
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~-~----~~~~i~~~v~~~g~~Ii~~k 233 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDK-W----LEGEFIPTVQQRGAAVIEAR 233 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchh-h----HHHHHHHHHHhhHHHHHhcc
Confidence 99999999999999999995 569999999999999999999999988764311 1 26789999999999999999
Q ss_pred CCcch-HHHHHHHHHHHHHHhcC--CCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760 263 GYTSW-AIGYSAANLARSIIRDQ--RKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS 337 (350)
Q Consensus 263 g~~~~-~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s 337 (350)
|+++| ++|.++++++++|++|+ +.++|+|++++| +||+| +++|||+||++|++|++++.+ ++|+++|+++|++|
T Consensus 234 G~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~-~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~s 312 (323)
T TIGR01759 234 GASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIP-EGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDAT 312 (323)
T ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence 99999 47799999999999998 899999999999 99996 589999999999999999888 99999999999999
Q ss_pred HHHHHHHHHH
Q 018760 338 AKTILEVQSQ 347 (350)
Q Consensus 338 a~~i~~~~~~ 347 (350)
++.|+++++.
T Consensus 313 a~~lk~~~~~ 322 (323)
T TIGR01759 313 EDELLEEKEE 322 (323)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 10
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-67 Score=497.26 Aligned_cols=306 Identities=20% Similarity=0.318 Sum_probs=280.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCC--ccchHHHHHHHHHHh-hcCCCceEEEcCCccccC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAK--ADKLRGEMLDLQHAA-AFLPRTKILASVDYAVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~--~~~l~~~~~dl~~~~-~~~~~~~v~~t~~~~al~ 104 (350)
+++++||+|||| |.||+++++.|+..++++ ||+|+|++ ++++++.++||+|+. ++....++. +.++++++
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~y~~~~ 79 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-DDPNVAFK 79 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-cChHHHhC
Confidence 467889999998 999999999999999988 99999995 457999999999997 333334554 56689999
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCc
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNL 182 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~l 182 (350)
|||+||+++|.|++||++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++++++ |+|++||||+ |.|
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~L 158 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRL 158 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHH
Confidence 99999999999999999999999999999999999999987 89999999999999999999999 9999999999 999
Q ss_pred cHHHHHHHHHHHcCCCCcceEEE-EEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760 183 DSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL 261 (350)
Q Consensus 183 d~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~ 261 (350)
|++|+++++|++++++|++|+++ ||||||++++|+||+++|+|+|+.+++.+. +..++++.+++++++++|++.
T Consensus 159 Ds~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~-----~~~~~~i~~~v~~~g~~Ii~~ 233 (326)
T PRK05442 159 DHNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQ-----AWLEDTFIPTVQKRGAAIIEA 233 (326)
T ss_pred HHHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccch-----hhHHHHHHHHHHhhHHHHHhC
Confidence 99999999999999999999996 599999999999999999999998876321 112678999999999999999
Q ss_pred cCCcchHHHHH-HHHHHHHHHhc--CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEe-ecCCCCHHHHHHHHHH
Q 018760 262 KGYTSWAIGYS-AANLARSIIRD--QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGV-TNIHLNQEESHRLRNS 337 (350)
Q Consensus 262 kg~~~~~~a~a-~~~ii~ai~~~--~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v-~~~~L~~~E~~~l~~s 337 (350)
||+++|++|.+ +++++++++++ ++.++|+|++++|+||+| +++|||+||++| +|++++ .+++|+++|+++|++|
T Consensus 234 kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~-~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s 311 (326)
T PRK05442 234 RGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIP-EGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDAT 311 (326)
T ss_pred cCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCc-CCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999 59999999999 899999999999999997 599999999999 999998 4599999999999999
Q ss_pred HHHHHHHHHHh
Q 018760 338 AKTILEVQSQL 348 (350)
Q Consensus 338 a~~i~~~~~~~ 348 (350)
++.|+++++.+
T Consensus 312 ~~~l~~~~~~~ 322 (326)
T PRK05442 312 LAELEEERDAV 322 (326)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 11
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=1e-66 Score=492.73 Aligned_cols=299 Identities=49% Similarity=0.821 Sum_probs=282.7
Q ss_pred EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcCc
Q 018760 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIA 119 (350)
Q Consensus 40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~~ 119 (350)
|+|||+|.||+++++.|+..++++||+|+|++++++++.++||+|...+....++..+++++++++||+||+++|.|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 68999999999999999999999999999999999999999999987643345666667789999999999999999999
Q ss_pred cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCC
Q 018760 120 GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 120 g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p 199 (350)
|++|.+++.+|+++++++++.|+++||++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++++|++++++|
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~ 160 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDP 160 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHH
Q 018760 200 QDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARS 279 (350)
Q Consensus 200 ~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~a 279 (350)
++|+++|+||||++++|+||+++|+|+|+.+++++ +++.++++.++++++++++++.||+++|++|.++++++++
T Consensus 161 ~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~-----~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~a 235 (300)
T cd00300 161 QSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS 235 (300)
T ss_pred ccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888643 2456788999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760 280 IIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ 345 (350)
Q Consensus 280 i~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~ 345 (350)
|+++++.++|++++++|+||. +++|||+||++|++|++++.+++|+++|+++|++|+++|++.+
T Consensus 236 i~~~~~~v~~~s~~~~g~yg~--~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 236 ILLDERRVLPVSAVQEGQYGI--EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHcCCCeEEEEEEEecCccCC--CCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999995 4899999999999999999999999999999999999999875
No 12
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=2e-66 Score=494.27 Aligned_cols=308 Identities=31% Similarity=0.524 Sum_probs=289.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
+.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|++|...+. ...++..++|+++++|||+||+++|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECCC
Confidence 56799999999999999999999987 689999999999999999999986433 2457777778899999999999999
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH 194 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~ 194 (350)
.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++++++++|++||||+||.+|++|+++++|++
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~~ 162 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEK 162 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHH
Q 018760 195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272 (350)
Q Consensus 195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a 272 (350)
++++|++|+++|+||||++++|+||+++|+|+|+.+++++. +++.++++++.+++++++++|++. ||+++|++|.+
T Consensus 163 l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~--~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~a 240 (319)
T PTZ00117 163 LGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKKG--AITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAA 240 (319)
T ss_pred hCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhcc--ccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 99999999999999999999999999999999999887542 366677899999999999999996 88999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
+++++++|++|++.++|++++++|+||++ ++|||+||++|++||+++.+++|+++|+++|++|++.|++.++++
T Consensus 241 ~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~ 314 (319)
T PTZ00117 241 IVAMIEAYLKDEKRVLVCSVYLNGQYNCK--NLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA 314 (319)
T ss_pred HHHHHHHHhcCCCeEEEEEEEeccccCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995 799999999999999999999999999999999999999998875
No 13
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-66 Score=492.27 Aligned_cols=308 Identities=48% Similarity=0.807 Sum_probs=289.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~ 117 (350)
|||+|||+|.||+++++.|+..++..+|+|+|++++++++.++|+.+...+....++. +++++++++||+||++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~-~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY-AGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe-eCCHHHhCCCCEEEEccCCCC
Confidence 6999999999999999999999988899999999999999999999986544334554 567889999999999999999
Q ss_pred CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760 118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV 197 (350)
Q Consensus 118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v 197 (350)
+++++|.+++.+|+++++++++.|++++|+++++++|||+|++++++++++|+|++||||+||.||+.|+++++|+++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v 159 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV 159 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHH
Q 018760 198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277 (350)
Q Consensus 198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii 277 (350)
++++|+++|||+||++++|+||+++|+|+|+.+++......++++.++++.+++++++++|++.||+++|++|.++++++
T Consensus 160 ~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~ 239 (308)
T cd05292 160 DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIV 239 (308)
T ss_pred CccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887543224666778999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 278 ~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
++|++|++.++|++++.+|+||++ ++|||+||+||++||+++.+++|+++|+++|++|++.|++.+++|
T Consensus 240 ~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~~~ 308 (308)
T cd05292 240 EAILRDENSVLTVSSLLDGQYGIK--DVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308 (308)
T ss_pred HHHHcCCCcEEEEEEEEcccCCCC--CEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999985 799999999999999999999999999999999999999998864
No 14
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-66 Score=490.68 Aligned_cols=310 Identities=31% Similarity=0.582 Sum_probs=289.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~ 112 (350)
+.+.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|+.|...+. ...++..++|+++++|||+||++
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~t 81 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVT 81 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEEC
Confidence 4566899999999999999999999997 469999999999988999999986543 24578877899999999999999
Q ss_pred cCCCcCccc-----cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHH
Q 018760 113 AGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRF 187 (350)
Q Consensus 113 ~g~~~~~g~-----~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~ 187 (350)
+|.++++|+ +|.+++..|++++++++++|+++||++|+|++|||+|++++.+++++++|++||||+||.+|+.|+
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~ 161 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRL 161 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHH
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCc
Q 018760 188 RFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYT 265 (350)
Q Consensus 188 ~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~ 265 (350)
++.+|++++++|++|+++|+||||++++|+||+++|+|.|+.++++.. ++++++++++.+++++++++|++. ||++
T Consensus 162 ~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~--~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t 239 (321)
T PTZ00082 162 RTYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKKG--LITQEEIDEIVERTRNTGKEIVDLLGTGSA 239 (321)
T ss_pred HHHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhcc--cCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999999999999999999999999887542 467778899999999999999995 6899
Q ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760 266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ 345 (350)
Q Consensus 266 ~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~ 345 (350)
+|++|.++++++++|++|++.++|+|++.+|+||++ ++|+|+||+||++|++++.+++|+++|+++|++|++.|++.+
T Consensus 240 ~~~ia~a~~~i~~ail~d~~~v~~vs~~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~ 317 (321)
T PTZ00082 240 YFAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGHK--DIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLE 317 (321)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEEecccCCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994 899999999999999999999999999999999999999988
Q ss_pred HHh
Q 018760 346 SQL 348 (350)
Q Consensus 346 ~~~ 348 (350)
+-|
T Consensus 318 ~~~ 320 (321)
T PTZ00082 318 ALL 320 (321)
T ss_pred hhh
Confidence 754
No 15
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.4e-66 Score=506.12 Aligned_cols=308 Identities=19% Similarity=0.253 Sum_probs=282.7
Q ss_pred CCCCCCeEEEEcC-ChhHHHHHHHHHhc-------CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-EcCCcccc
Q 018760 33 PTKRHTKISVIGT-GNVGMAIAQTILTQ-------DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-ASVDYAVT 103 (350)
Q Consensus 33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~-------~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t~~~~al 103 (350)
.++++.||+|||| |+||+++++.|+.. ++..||+|+|++++++++.++||+|+...... ++. .+.+|+++
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~-~v~i~~~~ye~~ 174 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLR-EVSIGIDPYEVF 174 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcC-ceEEecCCHHHh
Confidence 4667889999999 99999999999999 66679999999999999999999999732222 343 24678999
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCc
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNL 182 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~l 182 (350)
+|||+||+++|.|++||++|+|++..|+++++++++.|.+ ++|++++|++|||+|++|+++++.+|++|+|+||+||.|
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~L 254 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL 254 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccH
Confidence 9999999999999999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760 183 DSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL 261 (350)
Q Consensus 183 d~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~ 261 (350)
|++|++++||++++++|++|+ ++||||||+++||+||+++|+|+|+.+++.+.. | .++++.+++++++++|++.
T Consensus 255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~-~----~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHK-W----LEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhcccc-c----hHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 589999999999999999999999988875421 2 2578899999999999999
Q ss_pred cCCcch-HHHHHHHHHHHHHH--hcCCCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEee-cCCCCHHHHHHHHH
Q 018760 262 KGYTSW-AIGYSAANLARSII--RDQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVT-NIHLNQEESHRLRN 336 (350)
Q Consensus 262 kg~~~~-~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~-~~~L~~~E~~~l~~ 336 (350)
||+++| ++|.++++++.+|+ +|++.++|+|++++| +||++ +++|||+||++|++|++++. +++|+++|+++|++
T Consensus 330 kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~-~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~ 408 (444)
T PLN00112 330 WGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIA-EGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKK 408 (444)
T ss_pred cCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCC-CCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHH
Confidence 998888 89999999999999 899999999999999 59986 59999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHH
Q 018760 337 SAKTILEVQSQ 347 (350)
Q Consensus 337 sa~~i~~~~~~ 347 (350)
|+++|+++.+.
T Consensus 409 Sa~~L~~e~~~ 419 (444)
T PLN00112 409 SEAELLAEKRC 419 (444)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 16
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=4e-66 Score=497.87 Aligned_cols=307 Identities=20% Similarity=0.292 Sum_probs=280.4
Q ss_pred CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEE--eCCccchHHHHHHHHHHh-hcCCCceEE-EcCCccc
Q 018760 33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALV--DAKADKLRGEMLDLQHAA-AFLPRTKIL-ASVDYAV 102 (350)
Q Consensus 33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~--D~~~~~l~~~~~dl~~~~-~~~~~~~v~-~t~~~~a 102 (350)
.++++.||+|||| |+||+++|+.|+..++++ .|+|+ |++++++++.++||+|+. ++.. ++. .++++++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~--~v~i~~~~y~~ 117 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLR--EVSIGIDPYEV 117 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcC--ceEEecCCHHH
Confidence 3556899999999 999999999999999988 46666 889999999999999987 3332 333 2456899
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN 181 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ 181 (350)
++|||+||+++|.|++||++|+|++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+|++|+|+||+||.
T Consensus 118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~ 197 (387)
T TIGR01757 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTR 197 (387)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecch
Confidence 9999999999999999999999999999999999999999976 999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH
Q 018760 182 LDSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS 260 (350)
Q Consensus 182 ld~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~ 260 (350)
||++|++++||++++++|++|+ ++||||||++++|+||+++|+|+|+.+++.+.. | .++++.+++++++++|++
T Consensus 198 LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~~-~----~~~ei~~~v~~~g~eIi~ 272 (387)
T TIGR01757 198 LDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDTK-W----LEEEFTPTVQKRGGALIK 272 (387)
T ss_pred hHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhccccc-c----hHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999995 999999999999999999999999988765421 2 267889999999999999
Q ss_pred hcCCcch-HHHHHHHHHHHHHH--hcCCCeEEEEEEeccc-cCCCCCCeEEEEeEEEcCCceEEee-cCCCCHHHHHHHH
Q 018760 261 LKGYTSW-AIGYSAANLARSII--RDQRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGVT-NIHLNQEESHRLR 335 (350)
Q Consensus 261 ~kg~~~~-~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g~-~gi~~~~~~~s~Pv~ig~~Gv~~v~-~~~L~~~E~~~l~ 335 (350)
.||+++| ++|.++++++.+|+ +|++.++|+|++++|+ ||++ +++|||+||++|++|++++. +++|+++|+++|+
T Consensus 273 ~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~-~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~ 351 (387)
T TIGR01757 273 KWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIA-EGLVFSMPCRSKGDGDYELATDVSMDDFLRERIR 351 (387)
T ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCC-CCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHH
Confidence 9998888 99999999999999 8999999999999997 9986 59999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 018760 336 NSAKTILEVQSQ 347 (350)
Q Consensus 336 ~sa~~i~~~~~~ 347 (350)
+|++.|+++.+.
T Consensus 352 ~Sa~~L~~e~~~ 363 (387)
T TIGR01757 352 KSEDELLKEKEC 363 (387)
T ss_pred HHHHHHHHHHHH
Confidence 999999888753
No 17
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=1.6e-65 Score=484.89 Aligned_cols=301 Identities=35% Similarity=0.581 Sum_probs=281.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
|||+|||+|.||..+|+.++..++. +|+|+|++++...+.+.|+.+..... ...++..++|++++++||+||+++|.|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCC
Confidence 6999999999999999999999876 79999999888787888888765432 245787778898899999999999999
Q ss_pred cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760 117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~ 196 (350)
+++|++|++++..|.+++++++++|.+++|++++|++|||+|+++++++|++|+|++||||+||.||++|+++.+|++++
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~l~ 160 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELG 160 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHHHH
Q 018760 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAA 274 (350)
Q Consensus 197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a~~ 274 (350)
++|++|+++||||||++++|+||+++|+|+|+.+++. ++.++++.+++++++++|++. ||+++|++|.+++
T Consensus 161 v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~ 233 (305)
T TIGR01763 161 VSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVV 233 (305)
T ss_pred cCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999988653 234788999999999999997 6799999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
+++++|++|++.++|+|++.+|+||++ ++|+|+||++|++||+++.+++|+++|+++|++|++.|++.+++|
T Consensus 234 ~i~~ai~~~~~~v~~~s~~~~~~yg~~--~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~~~ 305 (305)
T TIGR01763 234 EMVEAILKDRKRVLPCAAYLDGQYGID--GIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCKML 305 (305)
T ss_pred HHHHHHhCCCCeEEEEEEEecccCCCC--ceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999984 899999999999999999999999999999999999999998865
No 18
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.8e-65 Score=487.03 Aligned_cols=304 Identities=24% Similarity=0.329 Sum_probs=279.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhh-cCCCceEEEcCCccccCCCCE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAGSDL 108 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~aDi 108 (350)
.||+|||| |.||+++++.|+..++++ +|+|+|+++ +++++.++|++|+.. +.....+. +.++++++|||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~-~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT-TDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe-cChHHHhCCCCE
Confidence 48999999 999999999999999887 499999999 999999999999863 33334554 456799999999
Q ss_pred EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhC-CCCCcEeeecCCccHHH
Q 018760 109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSG-LPSNRVIGSGTNLDSSR 186 (350)
Q Consensus 109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg-~~~~rviG~g~~ld~~r 186 (350)
||+++|.|++||++|++++..|+++++++++.|++++ |++++|++|||+|++|+++++++| +|++||||+ |.||++|
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R 158 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNR 158 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999999 699999999 9999999
Q ss_pred HHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHH-HHHHHHHHHHhhHHHHHHhcCC
Q 018760 187 FRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE-TLESIHKEVVDSAYEVISLKGY 264 (350)
Q Consensus 187 ~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~-~~~~i~~~v~~~~~~v~~~kg~ 264 (350)
+++++|++++++|++|+ ++||||||++++|+||+++|+|.|+.++.+. .++++ ..+++.+++++++++|++.||+
T Consensus 159 ~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~---~~~~~~~~~~i~~~v~~~~~~Ii~~kg~ 235 (323)
T cd00704 159 AKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD---LLDEEWLNDEFVKTVQKRGAAIIKKRGA 235 (323)
T ss_pred HHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc---ccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence 99999999999999995 5899999999999999999999999876532 13333 3678999999999999999999
Q ss_pred cchH-HHHHHHHHHHHHHhcCC--CeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760 265 TSWA-IGYSAANLARSIIRDQR--KIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT 340 (350)
Q Consensus 265 ~~~~-~a~a~~~ii~ai~~~~~--~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~ 340 (350)
++|+ +|.++++++++|++|++ .++|||++++|+| |+| +++|||+||++|++||+++.+++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~-~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~ 314 (323)
T cd00704 236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIP-PGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEE 314 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCC-CceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9996 69999999999999999 9999999999999 996 58999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 018760 341 ILEVQSQ 347 (350)
Q Consensus 341 i~~~~~~ 347 (350)
|+++.+.
T Consensus 315 l~~~~~~ 321 (323)
T cd00704 315 LIEEKEI 321 (323)
T ss_pred HHHHHHh
Confidence 9998764
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.5e-65 Score=481.88 Aligned_cols=306 Identities=21% Similarity=0.331 Sum_probs=280.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHh-hcCCCceEEEcCCccccCCC
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAA-AFLPRTKILASVDYAVTAGS 106 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~-~~~~~~~v~~t~~~~al~~a 106 (350)
+++||+|||| |.||+++++.|+..++++ ||+|+|+++ +++++.++||+|+. .+....++. +.++++++||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAFKDA 79 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHhCCC
Confidence 4689999999 999999999999999999 999999954 55999999999987 333334555 5678999999
Q ss_pred CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhC-CCCCcEeeecCCccH
Q 018760 107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSG-LPSNRVIGSGTNLDS 184 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg-~~~~rviG~g~~ld~ 184 (350)
|+||+++|.|++||++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+| +|++||+|+ |.||+
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs 158 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHH
Confidence 999999999999999999999999999999999999999 599999999999999999999995 999999999 99999
Q ss_pred HHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC
Q 018760 185 SRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG 263 (350)
Q Consensus 185 ~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg 263 (350)
.|+++.+|+++++++++|++ +|||+||++++|+||+++++|+|+.+++.+. +..++++.+++++++++|++.||
T Consensus 159 ~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~-----~~~~~~i~~~v~~~g~~Ii~~kG 233 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDR-----AWLEDEFIPTVQKRGAAIIKARG 233 (322)
T ss_pred HHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChH-----hhHHHHHHHHHHhhHHHHHhCcC
Confidence 99999999999999999998 5699999999999999999999997765321 11267899999999999999999
Q ss_pred CcchHHH-HHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760 264 YTSWAIG-YSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT 340 (350)
Q Consensus 264 ~~~~~~a-~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~ 340 (350)
+++|+++ .++++++++|++|+ +.++|++++++|+||+| +++|||+||++|++||+++.+++|+++|+++|++|++.
T Consensus 234 ~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~-~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ 312 (322)
T cd01338 234 ASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIP-EGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAE 312 (322)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCC-CCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999 59999999999999 59999999999999997 59999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 018760 341 ILEVQSQLG 349 (350)
Q Consensus 341 i~~~~~~~~ 349 (350)
|+++.+.+.
T Consensus 313 l~~~~~~~~ 321 (322)
T cd01338 313 LLEEREAVK 321 (322)
T ss_pred HHHHHHHhh
Confidence 999998753
No 20
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=8.1e-63 Score=468.43 Aligned_cols=302 Identities=37% Similarity=0.635 Sum_probs=282.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
++||+|||||+||+++++.++..++. +|+|+|++++++++..+|+++..... ...++..++|++++++||+||+++|.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCCC
Confidence 47999999999999999999999877 99999999999999899998875422 24577777788889999999999999
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL 195 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l 195 (350)
|+++|++|.+++.+|++++++++++|.+++|++++|++|||+|++|+++++++++|++||||+||.+|+.|++++||+++
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l 160 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEEL 160 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHHH
Q 018760 196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273 (350)
Q Consensus 196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a~ 273 (350)
+++|++|+++|+|+||++++|+||+++|+|.|+.+++ +++.++++.++++++++++++. |+++.|++|.++
T Consensus 161 ~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~ 233 (307)
T PRK06223 161 NVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASI 233 (307)
T ss_pred CcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHH
Confidence 9999999999999999999999999999999988763 3345788999999999999996 889999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348 (350)
Q Consensus 274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~ 348 (350)
++++++++.+++.++|++++++|+||++ +++||+||++|++||+++.+++|+++|+++|++|+++|++.++++
T Consensus 234 ~~ii~ail~~~~~~~~~~v~~~g~yg~~--~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 306 (307)
T PRK06223 234 AEMVEAILKDKKRVLPCSAYLEGEYGVK--DVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIEAL 306 (307)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCcCCCC--CeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999994 899999999999999999999999999999999999999999875
No 21
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=4.8e-63 Score=469.10 Aligned_cols=303 Identities=39% Similarity=0.627 Sum_probs=283.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEec
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
|||+|+|| |.+|++++..|+..++..+|+|+|+++ +++++.++|++|.....+ ..++..++|++++++||+||+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence 79999998 999999999999999888999999966 889999999998754332 34677677788899999999999
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD 193 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~ 193 (350)
|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++++++|+|++||||+||.||+.|++++||+
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~ 160 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK 160 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760 194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273 (350)
Q Consensus 194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~ 273 (350)
+++++|++|+++|+||||++++|+||+++|+|+|+.+++. +.++.++++.+++++++++|++.||+++||+|.++
T Consensus 161 ~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~ 235 (309)
T cd05294 161 HFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAI 235 (309)
T ss_pred HHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 9999999999999999999999999999999999988753 22445778999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760 274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~ 347 (350)
++++++|++|++.++|++++++|+| |++ ++++|+||++|++||+++.+++|+++|+++|++|++.|++.++.
T Consensus 236 ~~ii~ail~~~~~v~~vsv~~~g~~~~~~--~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 236 SNLVRTIANDERRILTVSTYLEGEIDGIR--DVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred HHHHHHHHCCCCeEEEEEEEECCccCCCC--CeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997 986 89999999999999999999999999999999999999998764
No 22
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.5e-62 Score=464.98 Aligned_cols=297 Identities=36% Similarity=0.661 Sum_probs=277.5
Q ss_pred EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCCcC
Q 018760 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGARQI 118 (350)
Q Consensus 40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~~~ 118 (350)
|+|||||.||+++++.++..++. +|+|+|++++++++..+|+.+..... ...++..++|++++++||+||+++|.|++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCCC
Confidence 68999999999999999999987 99999999998888888888865332 24578777788899999999999999999
Q ss_pred ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCC
Q 018760 119 AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVN 198 (350)
Q Consensus 119 ~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~ 198 (350)
+|++|.+++.+|++++++++++|+++||++++|++|||+|++++++++++++||+||||+||.+|++|+++++|++|+++
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v~ 159 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVS 159 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc--CCcchHHHHHHHHH
Q 018760 199 AQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK--GYTSWAIGYSAANL 276 (350)
Q Consensus 199 p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k--g~~~~~~a~a~~~i 276 (350)
|++|+++|+|+||++++|+||+++|+|.|+.+++. ++.++++.++++.++++|++.| |+++|++|.+++++
T Consensus 160 ~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i 232 (300)
T cd01339 160 VKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232 (300)
T ss_pred ccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999987643 3347889999999999999966 89999999999999
Q ss_pred HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 018760 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS 346 (350)
Q Consensus 277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~ 346 (350)
++++++|++.++|++++++|+||++ ++|||+||++|++||+++.+++|+++|+++|++|++.|++.++
T Consensus 233 ~~ail~~~~~i~~~s~~~~g~yg~~--~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~~ 300 (300)
T cd01339 233 VEAILKDKKRVLPCSAYLEGEYGIK--DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELID 300 (300)
T ss_pred HHHHHcCCCcEEEEEEEeccccCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999996 7999999999999999999999999999999999999998753
No 23
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.2e-63 Score=464.89 Aligned_cols=288 Identities=23% Similarity=0.399 Sum_probs=260.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-C-C--ccccCCCCEEEEe
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-V-D--YAVTAGSDLCIVT 112 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~-~--~~al~~aDiVIi~ 112 (350)
|||+|||| |+||+++|+.|+.+++.+||+|+|++ ++++.++||+|+.. ..++..+ . + +++++|||+||++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~daDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALKGADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcCCCCEEEEe
Confidence 69999999 99999999999999999999999999 88999999999862 3466643 3 3 7999999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH----HHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL----TYVAWKLSGLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~----~~~~~~~sg~~~~rviG~g~~ld~~r~~ 188 (350)
+|.|++||++|+|++..|+++++++++.|.+++|++|+|++|||+|++ +++++|.+++|++||||+ |.||++|++
T Consensus 76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~-~~LDs~R~~ 154 (310)
T cd01337 76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGV-TTLDVVRAN 154 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEee-echHHHHHH
Confidence 999999999999999999999999999999999999999999999997 888899999999999999 569999999
Q ss_pred HHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---cCC
Q 018760 189 FLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL---KGY 264 (350)
Q Consensus 189 ~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~---kg~ 264 (350)
+++|++++++|++|+++||||| |++++|+||++.+ +.+ ++++.++++.+++++++++|++. ||+
T Consensus 155 ~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~ 222 (310)
T cd01337 155 TFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQP----PFT--------FDQEEIEALTHRIQFGGDEVVKAKAGAGS 222 (310)
T ss_pred HHHHHHhCcCHHHEEEEEEecCCCCceecccccccc----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccCCCC
Confidence 9999999999999999999999 8999999999964 222 23455788999999999999997 489
Q ss_pred cchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760 265 TSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT 340 (350)
Q Consensus 265 ~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~ 340 (350)
++||+|.++++++++|++| ++.+++++ +.+|+ |. +++|+|+||++|++||+++.++ +|+++|+++|++|++.
T Consensus 223 t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~--~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~ 298 (310)
T cd01337 223 ATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT--EAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPE 298 (310)
T ss_pred cchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC--CceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999965 55788887 55665 65 4899999999999999999999 6999999999999999
Q ss_pred HHHHHHH
Q 018760 341 ILEVQSQ 347 (350)
Q Consensus 341 i~~~~~~ 347 (350)
|++.+++
T Consensus 299 i~~~~~~ 305 (310)
T cd01337 299 LKKNIEK 305 (310)
T ss_pred HHHHHhh
Confidence 9988763
No 24
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=7.8e-63 Score=465.82 Aligned_cols=288 Identities=22% Similarity=0.376 Sum_probs=262.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-c-CC--ccccCCCCEEEEec
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-S-VD--YAVTAGSDLCIVTA 113 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t-~~--~~al~~aDiVIi~~ 113 (350)
||+|||| |+||+++|+.|+.+++++||+|+|+++ +++.++||+|.. ...+++. + .+ +++++|||+||+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 7999999 999999999999999989999999988 678999999965 2456775 2 23 78999999999999
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch----HHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI----LTYVAWKLSGLPSNRVIGSGTNLDSSRFRF 189 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~----~~~~~~~~sg~~~~rviG~g~~ld~~r~~~ 189 (350)
|.|++||++|++++..|+++++++++.|.+++|++++|++|||+|+ +++++++.+|+|++||||+|+ ||++|+++
T Consensus 76 G~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~ 154 (312)
T TIGR01772 76 GVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANT 154 (312)
T ss_pred CCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHH
Confidence 9999999999999999999999999999999999999999999998 888999999999999999965 99999999
Q ss_pred HHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---cCCc
Q 018760 190 LLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL---KGYT 265 (350)
Q Consensus 190 ~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~---kg~~ 265 (350)
++|++++++|++|+++||||||+ +++|+||++++ .|. ++++.++++.+++++++++|++. ||++
T Consensus 155 ~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~----------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t 222 (312)
T TIGR01772 155 FVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL----------FTEDQLEALIHRIQNAGTEVVKAKAGAGSA 222 (312)
T ss_pred HHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC----------CCHHHHHHHHHHHHHHHHHHHhCccCCCCh
Confidence 99999999999999999999987 99999999983 222 33445788999999999999996 5889
Q ss_pred chHHHHHHHHHHHHHHh---cCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHHH
Q 018760 266 SWAIGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTI 341 (350)
Q Consensus 266 ~~~~a~a~~~ii~ai~~---~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~i 341 (350)
+||+|.++++++++|++ |++.++|++ +.+|+||.. ++|||+||++|++||+++.++ +|+++|+++|++|++.|
T Consensus 223 ~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i 299 (312)
T TIGR01772 223 TLSMAFAGARFVLSLVRGLKGEEGVVECA-YVESDGVTE--ATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPEL 299 (312)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCccEEEEE-EEccCCCcC--ceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999994 788899965 788999874 899999999999999999999 99999999999999999
Q ss_pred HHHHHH
Q 018760 342 LEVQSQ 347 (350)
Q Consensus 342 ~~~~~~ 347 (350)
++.+++
T Consensus 300 ~~~~~~ 305 (312)
T TIGR01772 300 KKNIKK 305 (312)
T ss_pred HHHHHH
Confidence 998764
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=5.5e-63 Score=470.17 Aligned_cols=303 Identities=20% Similarity=0.297 Sum_probs=273.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEE
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLC 109 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiV 109 (350)
||+|||| |.||+++++.|+..++++ +|+|+|++++ ++++.++|+.|+..... ..+..+++ +++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence 6999999 999999999999998875 6999999654 58999999999873222 23443434 7999999999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~ 188 (350)
|+++|.|++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++++|.+|+|+||+||.||++|++
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r 159 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRAL 159 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999987888899999999999999
Q ss_pred HHHHHHcCCCCcceE-EEEEeecCCceeeeecceeec-C---ccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC
Q 018760 189 FLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVG-G---VPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG 263 (350)
Q Consensus 189 ~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~-g---~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg 263 (350)
++||++++++|++|+ ++||||||++++|+||+++|+ | +|+.+++.+.. | ..+++.+++++++++|++.||
T Consensus 160 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~-~----~~~~i~~~v~~~g~~Ii~~k~ 234 (324)
T TIGR01758 160 AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDA-Y----LDGEFITTVQQRGAAIIRARK 234 (324)
T ss_pred HHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchh-h----HHHHHHHHHHhCHHHHHhccC
Confidence 999999999999996 599999999999999999999 9 99988764311 1 257889999999999999765
Q ss_pred -CcchHHHHHHHHHHHHHH--hcCCCeEEEEEEeccc-cCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760 264 -YTSWAIGYSAANLARSII--RDQRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK 339 (350)
Q Consensus 264 -~~~~~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g~-~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~ 339 (350)
++.|++|.++++++++|+ .|++.++|||++++|+ ||+| .++|||+||++|++||+.+.+++|+++|+++|++|++
T Consensus 235 ~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~-~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~ 313 (324)
T TIGR01758 235 LSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVP-KGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAK 313 (324)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCC-CceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 889999999999999999 7899999999999999 9996 5899999999999999998889999999999999999
Q ss_pred HHHHHHHHh
Q 018760 340 TILEVQSQL 348 (350)
Q Consensus 340 ~i~~~~~~~ 348 (350)
.|++.++.+
T Consensus 314 ~lk~~~~~~ 322 (324)
T TIGR01758 314 ELEEERDEA 322 (324)
T ss_pred HHHHHHHHh
Confidence 999998754
No 26
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1.8e-61 Score=455.59 Aligned_cols=277 Identities=21% Similarity=0.321 Sum_probs=255.5
Q ss_pred eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhh
Q 018760 64 ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPP 140 (350)
Q Consensus 64 ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~ 140 (350)
.++|+|+++ +++++.++||+|+...... .+..+++ +++++|||+||+++|.|++||++|.+++..|+++++++++.
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~-~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~ 93 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLK-GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA 93 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcC-CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 799999999 9999999999999832222 4554556 89999999999999999999999999999999999999999
Q ss_pred hhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcce-EEEEEeecCCceeeee
Q 018760 141 LVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVALW 218 (350)
Q Consensus 141 i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v-~~~v~G~hg~~~vp~~ 218 (350)
|.++ +|++++|++|||+|++|+++++.+++|++|+||+||.||++|++++||++++++|++| +++||||||++++|+|
T Consensus 94 i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~ 173 (309)
T PLN00135 94 LEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDV 173 (309)
T ss_pred HHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeecc
Confidence 9996 8999999999999999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred cceee----cCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh-cCCcchHHHHHHHHHHHHHHh--cCCCeEEEE
Q 018760 219 SSISV----GGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL-KGYTSWAIGYSAANLARSIIR--DQRKIHPVS 291 (350)
Q Consensus 219 S~~~v----~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~-kg~~~~~~a~a~~~ii~ai~~--~~~~v~~v~ 291 (350)
|+++| +|+|+.+++.+.. | ..+++.+++++++++|++. ||+++||+|.++++++++|++ +++.++|+|
T Consensus 174 S~a~v~~~~~g~p~~e~~~~~~-~----~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vs 248 (309)
T PLN00135 174 NHATVKTPSGEKPVRELVADDA-W----LNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMG 248 (309)
T ss_pred ccceEecCCCCcCHHHHhCchh-h----HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEE
Confidence 99999 9999988753211 1 2578999999999999997 789999999999999999999 679999999
Q ss_pred EEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 292 v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~ 347 (350)
++++|+||+| +++|||+||+++++||+.+.+++|+++|+++|++|++.|+++++.
T Consensus 249 v~~~g~YGi~-~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~~~ 303 (309)
T PLN00135 249 VYSDGSYGVP-PGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEKEL 303 (309)
T ss_pred EEecCccCCc-CCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 589999999999999999999999999999999999999998875
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.4e-61 Score=457.89 Aligned_cols=304 Identities=21% Similarity=0.306 Sum_probs=273.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCC
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGS 106 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~a 106 (350)
++.||+|+|| |.+|+++++.|+..++++ +|+|+|+++ +++++.++|+.|+...... ++..+++ +++++||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~~a 79 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK-SVVATTDPEEAFKDV 79 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC-CceecCCHHHHhCCC
Confidence 4689999999 999999999999988764 999999965 5578888999998632211 4443456 4899999
Q ss_pred CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCccH
Q 018760 107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLDS 184 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~ld~ 184 (350)
|+||+++|.+++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+ ++|+++ ||+||.||+
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~gt~LDs 158 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKEN-FTALTRLDH 158 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEeeehHHH
Confidence 999999999999999999999999999999999999996 89999999999999999999996 677777 999999999
Q ss_pred HHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeec----CccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760 185 SRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVG----GVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI 259 (350)
Q Consensus 185 ~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~----g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~ 259 (350)
.|+++++|++++++|++|+. +||||||++++|+||+++|+ |+|+.+++.+.. | ..+++.+++++++++|+
T Consensus 159 ~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~-~----~~~~i~~~v~~~g~~Ii 233 (325)
T cd01336 159 NRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDA-W----LNGEFISTVQKRGAAVI 233 (325)
T ss_pred HHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccc-h----hHHHHHHHHHhhHHHHH
Confidence 99999999999999999975 59999999999999999999 999988764321 1 25789999999999999
Q ss_pred Hh-cCCcchHHHHHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHH
Q 018760 260 SL-KGYTSWAIGYSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336 (350)
Q Consensus 260 ~~-kg~~~~~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~ 336 (350)
+. +|++.|++|.++++++++|++|+ +.++|++++++|+||++ +++|||+||++|++||+++.+++|+++|+++|++
T Consensus 234 ~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~-~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~ 312 (325)
T cd01336 234 KARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVP-EGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDA 312 (325)
T ss_pred HccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCC-CceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHH
Confidence 96 66999999999999999999984 89999999999999996 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018760 337 SAKTILEVQSQ 347 (350)
Q Consensus 337 sa~~i~~~~~~ 347 (350)
|++.|+++++.
T Consensus 313 s~~~l~~e~~~ 323 (325)
T cd01336 313 TAKELVEEKET 323 (325)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 28
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-60 Score=463.45 Aligned_cols=303 Identities=15% Similarity=0.236 Sum_probs=272.6
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeC--CccchHHHHHHHHHHhh-cCCCceEEEcCCccccC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDA--KADKLRGEMLDLQHAAA-FLPRTKILASVDYAVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~--~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~ 104 (350)
++++.+|+|.|| |.+|+++.+.|++..+++ .|+|+|+ +++++++.++||+|+.. +.....++ ++++++++
T Consensus 120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~~~ea~~ 198 (452)
T cd05295 120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TDLDVAFK 198 (452)
T ss_pred CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-ECCHHHhC
Confidence 445789999999 999999999999987653 6999999 78999999999999973 33334555 45679999
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC--CeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCC
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP--DCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTN 181 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~ 181 (350)
|||+||+++|.|+++|++|.|++..|++|++++++.|.+++| ++++|++|||+|++|+++++++ ++|++||+|+||
T Consensus 199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt- 277 (452)
T cd05295 199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR- 277 (452)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc-
Confidence 999999999999999999999999999999999999999999 8999999999999999999999 999999999988
Q ss_pred ccHHHHHHHHHHHcCCCCcce-EEEEEeecCCceeeeecceeecC------------ccccccchhhhccCCHHHHHHHH
Q 018760 182 LDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVALWSSISVGG------------VPILSFLEKQQIAYEKETLESIH 248 (350)
Q Consensus 182 ld~~r~~~~la~~l~v~p~~v-~~~v~G~hg~~~vp~~S~~~v~g------------~p~~~~~~~~~~~~~~~~~~~i~ 248 (350)
++++|++++||+++|++|++| +++||||||+++||+||+++|+| +|+.+++.+. .|+. +++.
T Consensus 278 lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~-~w~~----~~~~ 352 (452)
T cd05295 278 LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDS-KWIN----GEFV 352 (452)
T ss_pred hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcch-hhhH----HHHH
Confidence 669999999999999999999 56999999999999999999988 8988876432 2333 4566
Q ss_pred HHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCC
Q 018760 249 KEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHL 326 (350)
Q Consensus 249 ~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L 326 (350)
+.+++++. .+||++.||+|.|+++++++|++|+ +.++||+++++|+||+| .+++||+||+++++||+.+.+++|
T Consensus 353 ~~v~~rg~---~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip-~gv~~S~Pviig~~Gve~V~~L~L 428 (452)
T cd05295 353 ATLKSLSS---SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIP-EGIVFSMPVKFQNGSWEVVTDLEL 428 (452)
T ss_pred HHHHHHHH---hccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCc-CCEEEEEEEEEeCCeEEEEeCCCC
Confidence 66777777 6789999999999999999999997 68999999999999997 599999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 018760 327 NQEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 327 ~~~E~~~l~~sa~~i~~~~~~ 347 (350)
+++|+++|++|+++|.++.+.
T Consensus 429 ~e~E~~kL~~S~~eL~~E~~~ 449 (452)
T cd05295 429 SEILREVLKRITSDLIQEKLV 449 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 29
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-59 Score=445.70 Aligned_cols=290 Identities=27% Similarity=0.399 Sum_probs=264.4
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC----ccccCCCCEE
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD----YAVTAGSDLC 109 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~----~~al~~aDiV 109 (350)
.++.||+|||| |+||+++++.|+..++.+||+|+|+ +++++.++||+|... ...+...+| +++++|||+|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di--~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI--VGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGADLV 80 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec--CCCcccccchhhcCc---CceEEEecCCCchHHHhCCCCEE
Confidence 35569999999 9999999999999898899999999 567888999999764 345654434 6899999999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH----HHhCCCCCcEeeecCCccHH
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSS 185 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~----~~sg~~~~rviG~g~~ld~~ 185 (350)
|+++|.+++++++|.+++..|+++++++++.|.+++|++++++.|||+|+++++++ +.+++||+||||+|+ ||++
T Consensus 81 VitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~-LDs~ 159 (321)
T PTZ00325 81 LICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT-LDVV 159 (321)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh-HHHH
Confidence 99999999999999999999999999999999999999999999999999999985 889999999999975 9999
Q ss_pred HHHHHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc--
Q 018760 186 RFRFLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK-- 262 (350)
Q Consensus 186 r~~~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k-- 262 (350)
|+++++|++++++|++|+++||||||+ ++||+||++ |.|+ ++++++++.+++++++++|++.|
T Consensus 160 R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~~~~~i~~~v~~~g~~Ii~~k~~ 225 (321)
T PTZ00325 160 RARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEEQVEQITHRVQVGGDEVVKAKEG 225 (321)
T ss_pred HHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999 899999999 7775 23457889999999999999966
Q ss_pred -CCcchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760 263 -GYTSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS 337 (350)
Q Consensus 263 -g~~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s 337 (350)
|+++||+|.++++++++|++| ++.++|++ +.+|+||++ ++|+|+||++|++|++++.+ ++|+++|+++|++|
T Consensus 226 kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S 302 (321)
T PTZ00325 226 AGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRPE--CPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAA 302 (321)
T ss_pred CCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCCC--CeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence 799999999999999999965 88899995 888999974 89999999999999999999 89999999999999
Q ss_pred HHHHHHHHHH
Q 018760 338 AKTILEVQSQ 347 (350)
Q Consensus 338 a~~i~~~~~~ 347 (350)
++.|++.+++
T Consensus 303 ~~~i~~~~~~ 312 (321)
T PTZ00325 303 VPDLKKNIEK 312 (321)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 30
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2.3e-58 Score=435.56 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=247.6
Q ss_pred eEEEEeCCc--cchHHHHHHHHHHhhcCC-CceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHh
Q 018760 64 ELALVDAKA--DKLRGEMLDLQHAAAFLP-RTKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIP 139 (350)
Q Consensus 64 ev~L~D~~~--~~l~~~~~dl~~~~~~~~-~~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~ 139 (350)
.|+|+|+++ +++++.++||+|+. +.. ...+. ++++ ++++|||+||+++|.|++||++|.+++..|+++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~-~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV-TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe-cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 799999988 99999999999998 432 33444 5677 699999999999999999999999999999999999999
Q ss_pred hhhccCCC-eEEEEEcCCcchHHHHH-HHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEE-EEeecCCceee
Q 018760 140 PLVKYSPD-CILLIVANPVDILTYVA-WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVA 216 (350)
Q Consensus 140 ~i~~~~p~-a~viv~tNP~~~~~~~~-~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp 216 (350)
.|.+++|+ +++|++|||+|++|+++ ++.+|+|++ +||+||.||++|++++||++++++|++|+.+ ||||||++++|
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp 173 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVA 173 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceee
Confidence 99999955 78999999999999999 699999998 9999999999999999999999999999765 99999999999
Q ss_pred eecceee--cCccccccchhhhccCCHH-HHHHHHHHHHhhHHHHHHhcCCcchHHH-HHHHHHHHHHHh--cCCCeEEE
Q 018760 217 LWSSISV--GGVPILSFLEKQQIAYEKE-TLESIHKEVVDSAYEVISLKGYTSWAIG-YSAANLARSIIR--DQRKIHPV 290 (350)
Q Consensus 217 ~~S~~~v--~g~p~~~~~~~~~~~~~~~-~~~~i~~~v~~~~~~v~~~kg~~~~~~a-~a~~~ii~ai~~--~~~~v~~v 290 (350)
+||+++| +|.|+..+- .++++ .++++.+++++++++|++.||+++|+++ .++++++++|++ +++.++|+
T Consensus 174 ~~S~~~V~~~G~~~~~~~-----~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pv 248 (313)
T TIGR01756 174 DLTHAEFTKNGKHQKVFD-----ELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSM 248 (313)
T ss_pred cccccEEecCCeehhHhh-----hcCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 9999999 998865431 12221 3678999999999999999999999977 699999999999 66799999
Q ss_pred EEEec--cccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHHHHHHHHHHHH
Q 018760 291 SVLAK--GFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 291 ~v~~~--g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~sa~~i~~~~~~ 347 (350)
|++++ |+||++ +++++|+||++|++|++++.+ ++|+++|+++|++|++.|+++.+.
T Consensus 249 sv~l~~~g~YGi~-~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~ 307 (313)
T TIGR01756 249 GIPVPEGNPYGIK-PGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERET 307 (313)
T ss_pred EEEecCCCccCCC-CCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99885 399996 589999999999999999998 999999999999999999998764
No 31
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=8.2e-58 Score=433.17 Aligned_cols=291 Identities=24% Similarity=0.374 Sum_probs=260.2
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-cCC---ccccCCCCEE
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-SVD---YAVTAGSDLC 109 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t~~---~~al~~aDiV 109 (350)
..+.||+|||| |+||+++++.|+.+++.+||+|+|+++ +++.++||+|+.. ..++.. +++ +++++|||+|
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiV 90 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLV 90 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEE
Confidence 34569999999 999999999999999999999999988 7788999999874 234442 233 5889999999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc----hHHHHHHHHhCCCCCcEeeecCCccHH
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD----ILTYVAWKLSGLPSNRVIGSGTNLDSS 185 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~~~~~~~~sg~~~~rviG~g~~ld~~ 185 (350)
|+++|.|++||++|.+++..|+++++++++.+.+++|+++++++|||+| ++++++++.+++||+|+||+| .||++
T Consensus 91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~-~LDs~ 169 (323)
T PLN00106 91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT-TLDVV 169 (323)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe-cchHH
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999995 59999
Q ss_pred HHHHHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---
Q 018760 186 RFRFLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--- 261 (350)
Q Consensus 186 r~~~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--- 261 (350)
|+++++|++++++|.+|+++|+|+||+ +++|+||++.+ ..+ +++++++++.+++++++++|++.
T Consensus 170 Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~~ 237 (323)
T PLN00106 170 RANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP----KVS--------FTDEEIEALTKRIQNGGTEVVEAKAG 237 (323)
T ss_pred HHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhccee----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999999965 99999999953 221 34455889999999999999996
Q ss_pred cCCcchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHH
Q 018760 262 KGYTSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNS 337 (350)
Q Consensus 262 kg~~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~s 337 (350)
||+++||+|.++++++++|++| ++.++|++ +.+++| + +++|||+||+||++|++++.++ +|+++|+++|++|
T Consensus 238 kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S 313 (323)
T PLN00106 238 AGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--T-ELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEAL 313 (323)
T ss_pred CCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--C-CceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence 5899999999999999999995 66899999 556554 3 2499999999999999999998 9999999999999
Q ss_pred HHHHHHHHHH
Q 018760 338 AKTILEVQSQ 347 (350)
Q Consensus 338 a~~i~~~~~~ 347 (350)
++.|++.+++
T Consensus 314 ~~~i~~~~~~ 323 (323)
T PLN00106 314 KPELKASIEK 323 (323)
T ss_pred HHHHHHHhhC
Confidence 9999998763
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-57 Score=431.08 Aligned_cols=288 Identities=25% Similarity=0.389 Sum_probs=257.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHh-cCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCC-ccccCCCCEEEEe
Q 018760 38 TKISVIGT-GNVGMAIAQTILT-QDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVD-YAVTAGSDLCIVT 112 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~-~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~-~~al~~aDiVIi~ 112 (350)
|||+|||| |.+|+++++.|.. .+...+|+|+|+++. .++.++|++|.. ....+.. +++ +++++++|+||+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~---~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIP---TAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCC---CCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 79999999 9999999998866 466789999999854 567778998742 1234553 345 5889999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH----HHhCCCCCcEeeecCCccHHHHH
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~----~~sg~~~~rviG~g~~ld~~r~~ 188 (350)
+|.+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||++++ |++|+|++||||+| .||++|++
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~-~Lds~R~~ 155 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDVIRSE 155 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee-cHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 89999999999995 59999999
Q ss_pred HHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc---CC
Q 018760 189 FLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY 264 (350)
Q Consensus 189 ~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k---g~ 264 (350)
+++|++++++|++|+++||||||+ +++|+||++ +|.|+ +++.++++.+++++++++|++.| |+
T Consensus 156 ~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l-----------~~~~~~~i~~~v~~~g~~ii~~k~~~g~ 222 (312)
T PRK05086 156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSF-----------TEQEVADLTKRIQNAGTEVVEAKAGGGS 222 (312)
T ss_pred HHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccC-----------CHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999977 999999999 88776 23447889999999999999987 89
Q ss_pred cchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760 265 TSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT 340 (350)
Q Consensus 265 ~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~ 340 (350)
++||+|.++++++++|+++ ++.++|++ +.+|+ |. +++|||+||++|++|++++.++ +|+++|+++|++|++.
T Consensus 223 t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~--~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~ 298 (312)
T PRK05086 223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK--YARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDT 298 (312)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC--cceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999955 78899976 66775 65 4799999999999999999999 9999999999999999
Q ss_pred HHHHHHH
Q 018760 341 ILEVQSQ 347 (350)
Q Consensus 341 i~~~~~~ 347 (350)
|++.+++
T Consensus 299 i~~~~~~ 305 (312)
T PRK05086 299 LKKDIAL 305 (312)
T ss_pred HHHHHHH
Confidence 9998864
No 33
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=2.3e-55 Score=408.53 Aligned_cols=258 Identities=43% Similarity=0.692 Sum_probs=242.9
Q ss_pred EEEEcC-ChhHHHHHHHHHhcC--CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760 40 ISVIGT-GNVGMAIAQTILTQD--FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA 115 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~--~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~ 115 (350)
|+|||| |.+|..+++.|+..+ ...+|+|+|++++++++.++|++|........++..++| +++++|||+||+++|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999999 778999999999999999999999875333468888888 5899999999999999
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL 195 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l 195 (350)
++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|++++|++|+|++|+||+|| +|+.|+++++|+++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l 159 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKL 159 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHH
Q 018760 196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275 (350)
Q Consensus 196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ 275 (350)
+++|++|+++|||+||++++|+||+++ +|.++++
T Consensus 160 ~v~~~~v~~~v~G~hg~~~~~~~s~~~----------------------------------------------~a~~~~~ 193 (263)
T cd00650 160 GVDPDDVKVYILGEHGGSQVPDWSTVR----------------------------------------------IATSIAD 193 (263)
T ss_pred CCCccceEEEEEEcCCCceEeccccch----------------------------------------------HHHHHHH
Confidence 999999999999999999999999874 6789999
Q ss_pred HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ 345 (350)
Q Consensus 276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~ 345 (350)
++++|++|++.++|++++++|+||++ ++++||+||+++++||+++.+++|+++|+++|+++++.++..+
T Consensus 194 ii~ai~~~~~~~~~v~v~~~g~ygi~-~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 194 LIRSLLNDEGEILPVGVRNNGQIGIP-DDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHcCCCEEEEEEEEeCCccCCc-CCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 5999999999999999777889999999999999999998765
No 34
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.4e-48 Score=349.93 Aligned_cols=298 Identities=23% Similarity=0.443 Sum_probs=255.4
Q ss_pred CCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC---Cc-c
Q 018760 27 HAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV---DY-A 101 (350)
Q Consensus 27 ~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~---~~-~ 101 (350)
++..++...+..||+|+|| |.+|+++..+|..+++++++.|||+.. ..+.+.||+|+.. ...+...+ .. +
T Consensus 18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~T---~s~V~g~~g~~~L~~ 92 (345)
T KOG1494|consen 18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHINT---NSSVVGFTGADGLEN 92 (345)
T ss_pred cccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeeccc--CCcccccccccCC---CCceeccCChhHHHH
Confidence 5555556667889999999 999999999999999999999999974 5788999999874 33454332 23 5
Q ss_pred ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH---HHhC-CCCCcEee
Q 018760 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW---KLSG-LPSNRVIG 177 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~---~~sg-~~~~rviG 177 (350)
++++||+|||.+|+||||||+|+||+.-|+.|+++++..+.++||+|.+.++|||++.+.+++. |..| |+|+|+||
T Consensus 93 al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfG 172 (345)
T KOG1494|consen 93 ALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFG 172 (345)
T ss_pred HhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceec
Confidence 8999999999999999999999999999999999999999999999999999999998766543 3334 99999999
Q ss_pred ecCCccHHHHHHHHHHHcCCCC-cceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhH
Q 018760 178 SGTNLDSSRFRFLLADHLDVNA-QDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSA 255 (350)
Q Consensus 178 ~g~~ld~~r~~~~la~~l~v~p-~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~ 255 (350)
+ |.||..|++.++++.++++| ++++.+|+|+| |.+.+|++|+.. |.. .+++++++.++.+++..|
T Consensus 173 V-TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~----p~~--------~~~~~~~~~Lt~RiQ~gG 239 (345)
T KOG1494|consen 173 V-TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCK----PPF--------RFTDDEIEALTHRIQNGG 239 (345)
T ss_pred e-ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCC----Ccc--------cCCHHHHHHHHHHHHhCC
Confidence 9 99999999999999999999 55999999999 679999999884 432 478889999999999999
Q ss_pred HHHHHhc---CCcchHHHHHHHHHHHHHHhcCC---CeEEEEE-EeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCC
Q 018760 256 YEVISLK---GYTSWAIGYSAANLARSIIRDQR---KIHPVSV-LAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLN 327 (350)
Q Consensus 256 ~~v~~~k---g~~~~~~a~a~~~ii~ai~~~~~---~v~~v~v-~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~ 327 (350)
.||++.| |+.++|+|+|.++++.++++..+ .+.-|+. .+. .++++ ||+.|+++|++|++.+.++ +|+
T Consensus 240 tEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~-~~~~~----fFaspv~Lg~~Gv~~v~~l~~ls 314 (345)
T KOG1494|consen 240 TEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP-VTELP----FFATPVTLGKKGVEEVLGLGKLS 314 (345)
T ss_pred ceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc-ccCcc----ceeceEEecCCceeeecCCCccC
Confidence 9999876 67899999999999999998532 3433433 333 23553 9999999999999999987 999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018760 328 QEESHRLRNSAKTILEVQSQ 347 (350)
Q Consensus 328 ~~E~~~l~~sa~~i~~~~~~ 347 (350)
++|++.|+.+..+|++.+++
T Consensus 315 d~E~~~l~~~~~eLk~sI~K 334 (345)
T KOG1494|consen 315 DYEEKALEAAKPELKKSIEK 334 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.1e-44 Score=316.68 Aligned_cols=305 Identities=22% Similarity=0.316 Sum_probs=269.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCCc-cccC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFV-----EELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~ 104 (350)
++++.+|.|.|| |.+|+++++.++....+ -.++|+|+.+ +.|++..++|+++. +.....|.+++|. ++++
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afk 79 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFK 79 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhc
Confidence 356789999998 99999999999987433 2789999966 67899999999987 3334457777786 7899
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCc
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNL 182 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~l 182 (350)
|.|+.|+..++||++|++|.|++..|.+|++..+..+++| .|+..++++.||++..+.++.++. .+|.+++-.+ |.|
T Consensus 80 dv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~l-TRL 158 (332)
T KOG1496|consen 80 DVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSAL-TRL 158 (332)
T ss_pred cCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhh-hhh
Confidence 9999999999999999999999999999999999999999 589999999999999999998886 5888888777 999
Q ss_pred cHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecC----ccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760 183 DSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGG----VPILSFLEKQQIAYEKETLESIHKEVVDSAYE 257 (350)
Q Consensus 183 d~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g----~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~ 257 (350)
|.+|+..++|.+++++.++|+ ..+||||+.+|+|+..+++|++ .|+.+.+.+.. |+.. ++.+.|++||..
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~-wL~g----~Fi~tVQkRGaa 233 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDA-WLQG----EFIETVQKRGAA 233 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccch-hhcc----chhhHHHhcchH
Confidence 999999999999999999996 5699999999999999999986 78888887664 7774 455668889999
Q ss_pred HHHhcCCc-chHHHHHHHHHHHHHHhc--CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHH
Q 018760 258 VISLKGYT-SWAIGYSAANLARSIIRD--QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334 (350)
Q Consensus 258 v~~~kg~~-~~~~a~a~~~ii~ai~~~--~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l 334 (350)
+++.|+.+ ..|.|.++++.+++++.. ++++++++|+++|.||+| ++..||+||.+..+-|+-+.+++++++-++++
T Consensus 234 vi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip-~gli~SfPv~~k~g~wkiVqgl~iddf~r~km 312 (332)
T KOG1496|consen 234 VIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIP-DGLIFSFPVTIKNGDWKIVQGLPIDDFSREKM 312 (332)
T ss_pred hhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCC-CCeEEEcceEecCCceEEEcCcchhHHHHHhh
Confidence 99887754 567788889999998876 568999999999999999 69999999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018760 335 RNSAKTILEVQS 346 (350)
Q Consensus 335 ~~sa~~i~~~~~ 346 (350)
..++++|+++.+
T Consensus 313 ~~t~~EL~eEkd 324 (332)
T KOG1496|consen 313 DLTAKELKEEKD 324 (332)
T ss_pred hhhHHHHHHhHH
Confidence 999999999876
No 36
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=100.00 E-value=1e-37 Score=306.38 Aligned_cols=287 Identities=20% Similarity=0.253 Sum_probs=215.2
Q ss_pred CeEEEEcCChhHHH--HHHHHHhcC--C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCEE
Q 018760 38 TKISVIGTGNVGMA--IAQTILTQD--F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDLC 109 (350)
Q Consensus 38 ~KI~IIGAG~vG~~--~a~~l~~~~--~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDiV 109 (350)
|||+|||||+. ++ +...|+... + .+||+|+|+|++|++. +..+.+... .....++..|+|. +|++|||||
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999986 32 345566554 3 4799999999999874 444433321 2346789999997 789999999
Q ss_pred EEecCCC------------cCcc---cc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760 110 IVTAGAR------------QIAG---ES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG 169 (350)
Q Consensus 110 Ii~~g~~------------~~~g---~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg 169 (350)
|.+..+. .+.| ++ ....+.+|+++++++++.|+++||+||+|++|||++++|+++++++
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~- 157 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV- 157 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC-
Confidence 9985432 2332 11 3556789999999999999999999999999999999999999984
Q ss_pred CCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh---h----------
Q 018760 170 LPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK---Q---------- 235 (350)
Q Consensus 170 ~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~---~---------- 235 (350)
|+.||||+ |+. +.|+++.+|+.+|+++++|+++++| ||| +|||+++++|+|+...+.+ .
T Consensus 158 -p~~rviG~-c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~ 230 (425)
T cd05197 158 -PPEKAVGL-CNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP 230 (425)
T ss_pred -CCCcEEEE-CCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence 67899999 555 8999999999999999999999999 996 9999999999887633221 0
Q ss_pred ------------------------hcc-CCHHHHH----HHH------HHHHhhHH---HH------------HHhcCCc
Q 018760 236 ------------------------QIA-YEKETLE----SIH------KEVVDSAY---EV------------ISLKGYT 265 (350)
Q Consensus 236 ------------------------~~~-~~~~~~~----~i~------~~v~~~~~---~v------------~~~kg~~ 265 (350)
.|+ +.++..+ ++. +.+..... +. +..++..
T Consensus 231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r~~~ 310 (425)
T cd05197 231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGR 310 (425)
T ss_pred ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhcCCc
Confidence 000 0111111 100 00000000 00 1112233
Q ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760 266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337 (350)
Q Consensus 266 ~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s 337 (350)
.| +..++.+++||++|.+.++.++|.|+|.. ++| +|.++++||+++++|++|+.-.+|++....+++.-
T Consensus 311 ~~--~e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp-~d~vVEvp~~v~~~Gi~P~~vg~lp~~~~~Li~~~ 380 (425)
T cd05197 311 KY--SEAAIPLIRALLNDNGARFVVNTRNNGAIANID-DDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQR 380 (425)
T ss_pred cc--HHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCC-CCCEEEEeEEEcCCCceecccCCCCHHHHHHHHHH
Confidence 34 48899999999999999999999999996 998 69999999999999999998889988776666553
No 37
>PRK15076 alpha-galactosidase; Provisional
Probab=100.00 E-value=8.1e-38 Score=308.04 Aligned_cols=291 Identities=18% Similarity=0.224 Sum_probs=221.4
Q ss_pred CCeEEEEcCChhHHHHHH--HHH-hcCCC-CeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCC-ccccCCCCEEE
Q 018760 37 HTKISVIGTGNVGMAIAQ--TIL-TQDFV-EELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVD-YAVTAGSDLCI 110 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~--~l~-~~~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~-~~al~~aDiVI 110 (350)
++||+|||||+||++.++ .++ ..++. .||+|+|+++++++.....+++..... ...++..|+| +++++||||||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 369999999999998876 666 34454 499999999999883332355554322 3578888889 48999999999
Q ss_pred EecCCC-cCcc--------------ccHHHH--------HHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHH
Q 018760 111 VTAGAR-QIAG--------------ESRLNL--------LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKL 167 (350)
Q Consensus 111 i~~g~~-~~~g--------------~~r~~~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~ 167 (350)
++++.+ .+++ ++|.+. +.+|++++++++++|+++||+||+|++|||++++|++++
T Consensus 81 ~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-- 158 (431)
T PRK15076 81 NAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-- 158 (431)
T ss_pred EeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh--
Confidence 999876 4444 455566 899999999999999999999999999999999999997
Q ss_pred hCCCCCcEeeec-CCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh-----------
Q 018760 168 SGLPSNRVIGSG-TNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK----------- 234 (350)
Q Consensus 168 sg~~~~rviG~g-~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~----------- 234 (350)
++|+.||||++ +.++ ..+.+|+.+++++++|++++.| || +.|+.+.+++|.++...+.+
T Consensus 159 -~~~~~rviG~c~~~~~---~~~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~ 230 (431)
T PRK15076 159 -RYPGIKTVGLCHSVQG---TAEQLARDLGVPPEELRYRCAGINH----MAWYLELERKGEDLYPELRAAAAEGQTRCQD 230 (431)
T ss_pred -cCCCCCEEEECCCHHH---HHHHHHHHhCCCHHHeEEEEEeecc----hhhheeeeECCcchHHHHHHHHhccCchhcc
Confidence 56778999994 3444 3488999999999999999999 99 89999999988765422111
Q ss_pred ----h-----------------h--ccC----CHHHHHHHHH---HHHhhH-------HHHH-HhcCCcch---HHHHHH
Q 018760 235 ----Q-----------------Q--IAY----EKETLESIHK---EVVDSA-------YEVI-SLKGYTSW---AIGYSA 273 (350)
Q Consensus 235 ----~-----------------~--~~~----~~~~~~~i~~---~v~~~~-------~~v~-~~kg~~~~---~~a~a~ 273 (350)
. . .|+ .++.++++.. ...++. .+.. +.++...| ..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 310 (431)
T PRK15076 231 KVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSREYA 310 (431)
T ss_pred cccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccchHHH
Confidence 0 0 122 3444443321 001111 1111 22233111 134789
Q ss_pred HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760 274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338 (350)
Q Consensus 274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa 338 (350)
+++++||.+|.+.++.++|.|+|.. ++| +|.++++||.++++|++|+.-.+|++..+.+++.-.
T Consensus 311 ~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~P~~~g~lP~~~~~l~~~~~ 375 (431)
T PRK15076 311 STIIEAIETGEPSVIYGNVRNNGLIDNLP-QGCCVEVPCLVDRNGIQPTKVGDLPPQLAALNRTNI 375 (431)
T ss_pred HHHHHHHhcCCceEEEEECCCCCcCCCCC-CCCEEEEeEEEcCCcceeeecCCCCHHHHHHHHHHH
Confidence 9999999999999999999999996 998 699999999999999999999999999887765543
No 38
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=100.00 E-value=8.5e-37 Score=299.34 Aligned_cols=289 Identities=21% Similarity=0.296 Sum_probs=220.1
Q ss_pred CeEEEEcCChhHHH-HHHHHHhc-C-C-CCeEEEEeCC-ccchHHHHHHHHHHhh-cCCCceEEEcCCc-cccCCCCEEE
Q 018760 38 TKISVIGTGNVGMA-IAQTILTQ-D-F-VEELALVDAK-ADKLRGEMLDLQHAAA-FLPRTKILASVDY-AVTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~~-~a~~l~~~-~-~-~~ev~L~D~~-~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~-~al~~aDiVI 110 (350)
|||+|||||++... +...|+.. . + .++|+|+|+| +++++......+.... ..+..++..|+|+ +|++||||||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999987333 34556653 2 3 4799999999 8988754333333322 2246789999997 7899999999
Q ss_pred EecCCCcCccccHHH--------------------HHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCC
Q 018760 111 VTAGARQIAGESRLN--------------------LLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGL 170 (350)
Q Consensus 111 i~~g~~~~~g~~r~~--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~ 170 (350)
++++++..++.++++ .+.+|+++++++++.|+++||+||+|++|||++++|++++|.+
T Consensus 81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~-- 158 (419)
T cd05296 81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT-- 158 (419)
T ss_pred EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc--
Confidence 998776655554433 3789999999999999999999999999999999999999886
Q ss_pred CCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh----------h----
Q 018760 171 PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK----------Q---- 235 (350)
Q Consensus 171 ~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~----------~---- 235 (350)
+.||||+ |+. +.|+++.+|+.+|+++++|+++++| || +.|+.+.+.+|+++...+.+ .
T Consensus 159 -~~rviGl-c~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~ 231 (419)
T cd05296 159 -GDRVIGL-CNV-PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFG 231 (419)
T ss_pred -cCCEEee-CCc-HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCcccHHHHHHHhhhccccccccchH
Confidence 5799999 766 4899999999999999999999999 99 89999999988876532111 0
Q ss_pred ---------------hccC-CHHHHHHHHHHHHhhH-------HHH---------------HHhcCCcchHHHHHHHHHH
Q 018760 236 ---------------QIAY-EKETLESIHKEVVDSA-------YEV---------------ISLKGYTSWAIGYSAANLA 277 (350)
Q Consensus 236 ---------------~~~~-~~~~~~~i~~~v~~~~-------~~v---------------~~~kg~~~~~~a~a~~~ii 277 (350)
.||+ .++.+++....-..++ .++ +..|+...|+ ..+++++
T Consensus 232 ~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~~ii 309 (419)
T cd05296 232 PELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAALALI 309 (419)
T ss_pred HHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHHHHH
Confidence 0122 2333333221100111 111 1123333443 8899999
Q ss_pred HHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760 278 RSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338 (350)
Q Consensus 278 ~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa 338 (350)
+||+++.+.++.+++.|+|.. ++| +|+++++||.++++|++|+.-.+|++....+++.-.
T Consensus 310 ~ai~~~~~~~~~vNv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~P~~vg~lP~~~~~l~~~~~ 370 (419)
T cd05296 310 SAIYNDKGDIHVVNVRNNGAIPGLP-DDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVK 370 (419)
T ss_pred HHHhcCCCcEEEEECCCCCCCCCCC-CCCEEEEeEEEcCCCceeccCCCCCHHHHHHHHHHH
Confidence 999999999999999999996 998 699999999999999999988899998877655433
No 39
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.9e-37 Score=271.08 Aligned_cols=167 Identities=42% Similarity=0.731 Sum_probs=157.4
Q ss_pred CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI 259 (350)
Q Consensus 180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~ 259 (350)
|.||++|+++++|+++|++|++++++||||||+++||+||+++++|.|+.++..... .+++++++++.+++++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSG-KLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTT-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeeccccccccccccccccc-chhHHhhhccccccEeccceee
Confidence 579999999999999999999999999999999999999999999999988765432 5788899999999999999999
Q ss_pred Hhc-CCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCC-eEEEEeEEEcCCceEEeec-CCCCHHHHHHHHH
Q 018760 260 SLK-GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGD-VFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRN 336 (350)
Q Consensus 260 ~~k-g~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~-~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~ 336 (350)
+.| |+++||+|.++++++++|+++.+.++|++++.+|+||++ ++ +|||+||++|++|++++.+ ++|+++|+++|++
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~-~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~ 158 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIP-DGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKLKE 158 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEE-SSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcc-cccceecceEEEcCCeeEEEeCCCCCCHHHHHHHHH
Confidence 999 999999999999999999999999999999999999997 35 9999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHh
Q 018760 337 SAKTILEVQSQL 348 (350)
Q Consensus 337 sa~~i~~~~~~~ 348 (350)
|++.|++.+++.
T Consensus 159 sa~~l~~~i~~~ 170 (174)
T PF02866_consen 159 SAKELKKEIEKG 170 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999763
No 40
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=100.00 E-value=2.4e-35 Score=290.01 Aligned_cols=291 Identities=19% Similarity=0.275 Sum_probs=215.9
Q ss_pred CeEEEEcCChhHH-HHHHHHHhcC--C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCEEE
Q 018760 38 TKISVIGTGNVGM-AIAQTILTQD--F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~-~~a~~l~~~~--~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDiVI 110 (350)
|||+|||||++=+ .+...|+... + .++|+|+|+|++|++. +..+.+... .....++..|+|. +|++||||||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence 7999999998622 1345666552 3 4799999999999975 444443321 2346789999997 7999999999
Q ss_pred EecCCC------------cCcc---cc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCC
Q 018760 111 VTAGAR------------QIAG---ES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGL 170 (350)
Q Consensus 111 i~~g~~------------~~~g---~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~ 170 (350)
++..+. .+.| ++ ....+.||+++++++++.|+++||+||+|++|||++++|+++++. +
T Consensus 80 ~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~--~ 157 (437)
T cd05298 80 AQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL--F 157 (437)
T ss_pred EEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--C
Confidence 985332 2332 11 355688999999999999999999999999999999999999987 6
Q ss_pred CCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeec-Cccccccchh---h-h--------
Q 018760 171 PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVG-GVPILSFLEK---Q-Q-------- 236 (350)
Q Consensus 171 ~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~-g~p~~~~~~~---~-~-------- 236 (350)
|..||||+ |+.. ..+.+.+|+.||+++++|...+.| || +.|+.+.+.+ |+++...+.+ . .
T Consensus 158 ~~~kviGl-C~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~ 231 (437)
T cd05298 158 PNARILNI-CDMP-IAIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDE 231 (437)
T ss_pred CCCCEEEE-CCcH-HHHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCchHHHHHHHHhccCCCcccccc
Confidence 77899999 9985 578889999999999999999999 99 8899999998 8765533221 0 0
Q ss_pred -------------------------------ccC-CHHHHHHHHH-------HHHhhHHHHH---H---hcCCc---ch-
Q 018760 237 -------------------------------IAY-EKETLESIHK-------EVVDSAYEVI---S---LKGYT---SW- 267 (350)
Q Consensus 237 -------------------------------~~~-~~~~~~~i~~-------~v~~~~~~v~---~---~kg~~---~~- 267 (350)
+++ .++..+++.. .+.....+.. + ..+.. .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (437)
T cd05298 232 EHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFH 311 (437)
T ss_pred cccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhh
Confidence 001 1111122110 0111111110 0 00100 11
Q ss_pred --HHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760 268 --AIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338 (350)
Q Consensus 268 --~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa 338 (350)
..|.+++++++||++|++.++++|++++|.| ++| +|+++|+||+||++|++++.-.+|++....+++.-.
T Consensus 312 ~~~ya~~a~~ii~aI~~d~~~~~~vnv~n~G~i~nL~-~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~~~~ 384 (437)
T cd05298 312 VDVHGEYIVDLAASIAYNTKERFLVIVENNGAIPNLP-DDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQV 384 (437)
T ss_pred ccchHHHHHHHHHHHHcCCCeEEEEEeecCCccCCCC-CCcEEEEEEEEeCCCceecccCCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999998 687 699999999999999999998899998877765543
No 41
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=275.82 Aligned_cols=293 Identities=19% Similarity=0.232 Sum_probs=217.3
Q ss_pred CCCeEEEEcCChhHHHHH-H-HHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCE
Q 018760 36 RHTKISVIGTGNVGMAIA-Q-TILTQD-F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDL 108 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a-~-~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDi 108 (350)
+++||+|||||+++.+-. . .|...+ + ..+|+|+|++++|++ ....+.+... ..+..++..|+|. +|++||||
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLK-IIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 457999999999887753 2 344433 2 469999999999998 4444444331 2345889999997 79999999
Q ss_pred EEEecCC------------CcCccc---c-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHh
Q 018760 109 CIVTAGA------------RQIAGE---S-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLS 168 (350)
Q Consensus 109 VIi~~g~------------~~~~g~---~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~s 168 (350)
|+.+..+ |.+.|- + ......|++|++.+|++.|+++||+||++++|||+.++|+++.|++
T Consensus 81 Vi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv~r~~ 160 (442)
T COG1486 81 VITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRLY 160 (442)
T ss_pred EEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHHHHhC
Confidence 9998532 233332 1 3445789999999999999999999999999999999999999985
Q ss_pred CCCCCcEeeecCCccHHHHHHHHHHHcCCCC-cceEEEEEe-ecCCceeeeecceeecCccccccchh----h-------
Q 018760 169 GLPSNRVIGSGTNLDSSRFRFLLADHLDVNA-QDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK----Q------- 235 (350)
Q Consensus 169 g~~~~rviG~g~~ld~~r~~~~la~~l~v~p-~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~----~------- 235 (350)
+ .-|+||+ |+.. .-....+|+.|++++ ++++..+.| || +.||.+++.+|.++...+.+ .
T Consensus 161 ~--~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~ 232 (442)
T COG1486 161 P--KIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDLYPELLEALEEGGSPSEPE 232 (442)
T ss_pred C--CCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccchHHHHHHHhccccCCccc
Confidence 4 3499999 9975 678999999999975 999999999 99 88999888887654422211 0
Q ss_pred --------------------------hccCCHHHHH-----HH------HHHHHhhHHHH---------------HHhcC
Q 018760 236 --------------------------QIAYEKETLE-----SI------HKEVVDSAYEV---------------ISLKG 263 (350)
Q Consensus 236 --------------------------~~~~~~~~~~-----~i------~~~v~~~~~~v---------------~~~kg 263 (350)
.+++.+..+. ++ .+.++++..+. .+.++
T Consensus 233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~ 312 (442)
T COG1486 233 NKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRI 312 (442)
T ss_pred cccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcC
Confidence 0111111111 00 01111111111 11123
Q ss_pred Cc--chHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760 264 YT--SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT 340 (350)
Q Consensus 264 ~~--~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~ 340 (350)
.+ .| +..++++++||++|++.++.++|.|+|.. ++| +|.++++||+++++|++++...+|++.-...++.....
T Consensus 313 ~~~~~~--~e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp-~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~~ 389 (442)
T COG1486 313 GAGKYS--SEYASNIINAIENNKPSRIYVNVRNNGAITNLP-DDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNINV 389 (442)
T ss_pred Cccccc--HHHHHHHHHHHhcCCceEEEEEcCCCccccCCC-CCeEEEeeEEecCCCCcccccCCCCHHHHHHHHHHHHH
Confidence 32 33 47899999999999999999999999995 998 69999999999999999999999999998877765543
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=100.00 E-value=1.1e-33 Score=279.15 Aligned_cols=289 Identities=19% Similarity=0.212 Sum_probs=220.7
Q ss_pred CeEEEEcCChhHHHHHH--HHHhc-CCC-CeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCEEEE
Q 018760 38 TKISVIGTGNVGMAIAQ--TILTQ-DFV-EELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDLCIV 111 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~--~l~~~-~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDiVIi 111 (350)
+||+|||||++|++.+. .++.. .+. .+|+|+|+++++++....++.+.... ....++..++|+ ++++|||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999999776 56544 332 49999999999999887777665432 234688888896 78999999999
Q ss_pred ecCCCcCccccH----------------------HHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760 112 TAGARQIAGESR----------------------LNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG 169 (350)
Q Consensus 112 ~~g~~~~~g~~r----------------------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg 169 (350)
+++....++.++ .....+|++++.++++.+.++||++|++++|||++++|+++++.++
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 987654444333 4567889999999999999999999999999999999999999987
Q ss_pred CCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh---h----------
Q 018760 170 LPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK---Q---------- 235 (350)
Q Consensus 170 ~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~---~---------- 235 (350)
.|+||+ |+. +.++++.+|+.+++++++|+++++| || +.||.+.+.+|+++...+.+ .
T Consensus 161 ---~rviG~-c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~ 231 (423)
T cd05297 161 ---IKTVGL-CHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSP 231 (423)
T ss_pred ---CCEEEE-CCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCcchHHHHHHHHhccCccchhccc
Confidence 599999 655 7899999999999999999999999 99 88999999888765532211 0
Q ss_pred ---------------------h--cc--CCHHHHHHHHHH----------HHhhHHHHHH-----------hcCCcchHH
Q 018760 236 ---------------------Q--IA--YEKETLESIHKE----------VVDSAYEVIS-----------LKGYTSWAI 269 (350)
Q Consensus 236 ---------------------~--~~--~~~~~~~~i~~~----------v~~~~~~v~~-----------~kg~~~~~~ 269 (350)
. ++ ..++.+...... ....-+.-.. ..+... .
T Consensus 232 ~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 309 (423)
T cd05297 232 VRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKR--S 309 (423)
T ss_pred chHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhcccccc--c
Confidence 0 00 110111111000 0000000000 011122 3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760 270 GYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338 (350)
Q Consensus 270 a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa 338 (350)
+..++++++||+++.+.++.+++.|+|.. ++| +|.++++||.++++|++|+.-.+|++....+++.-.
T Consensus 310 ~e~a~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~p~~~g~lp~~~~~l~~~~~ 378 (423)
T cd05297 310 GEYASPIIEALVTGKPRRINGNVPNNGLIPNLP-DDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRI 378 (423)
T ss_pred hHHHHHHHHHHhcCCceEEEEECCCCCCCCCCC-CCcEEEEeeEEcCCCceecccCCCCHHHHHHHHHHH
Confidence 47799999999999999999999999995 998 699999999999999999999999998877766544
No 43
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=2.4e-33 Score=236.56 Aligned_cols=139 Identities=45% Similarity=0.771 Sum_probs=129.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
|||+|||| |.||+++++.|+.+++.+||+|+|++++++++.++|++|...+.. ...+. +.++++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRIT-SGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEE-ESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccc-cccccccccccEEEEeccc
Confidence 79999999 999999999999999999999999999999999999999987553 33444 3678999999999999999
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG 177 (350)
+++||++|.+++..|++++++++++|.+++|+++++++|||+|++++++++++++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.90 E-value=4.4e-23 Score=179.60 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=115.5
Q ss_pred eEEEEcCChhHHHHH--HHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHh-h-cCCCceEEEcCCc-cccCCCCEEEE
Q 018760 39 KISVIGTGNVGMAIA--QTILTQDF--VEELALVDAKADKLRGEMLDLQHAA-A-FLPRTKILASVDY-AVTAGSDLCIV 111 (350)
Q Consensus 39 KI~IIGAG~vG~~~a--~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~~~~v~~t~~~-~al~~aDiVIi 111 (350)
||+|||||++-++.. ..+...+- ..||+|+|+|++|++. +..+.... . .....++..|+|. +|++||||||+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~-~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEI-VERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHH-HHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHH-HHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 899999999877753 34444442 2599999999999984 33333322 1 3357899999997 78999999999
Q ss_pred ecCC------------CcCcccc----------HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760 112 TAGA------------RQIAGES----------RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG 169 (350)
Q Consensus 112 ~~g~------------~~~~g~~----------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg 169 (350)
+..+ |.+.|.. ....+.|++|++.++++.|+++|||||++|+|||+.++|+++.|+++
T Consensus 80 ~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~ 159 (183)
T PF02056_consen 80 QIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTP 159 (183)
T ss_dssp ---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHST
T ss_pred EeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCC
Confidence 9643 3344321 35668899999999999999999999999999999999999998865
Q ss_pred CCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760 170 LPSNRVIGSGTNLDSSRFRFLLADHLDV 197 (350)
Q Consensus 170 ~~~~rviG~g~~ld~~r~~~~la~~l~v 197 (350)
..|++|+ |+.. .-..+.+|+.||.
T Consensus 160 --~~k~vGl-Ch~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 160 --KIKVVGL-CHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp --TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred --CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence 2599999 9975 6788889999873
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=3.2e-11 Score=115.26 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=113.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhh-cCCCceEEEcCCc-cccCCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAA-FLPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~-~~~~~~v~~t~~~-~al~~aD 107 (350)
|||+|||.|.||...+..|++.|. +|+++|++++|.+.+-. .|++... .....++.+|+|+ ++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 799999999999999999999984 99999999998874321 1221111 1124468899998 5799999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC-eEEEEE-cCCcchHHHHHHHHhCCCCCcEeeecCCccHH
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD-CILLIV-ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSS 185 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~-tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~ 185 (350)
++++++|+|.++..+ .+...+...++.|.++.+. +++++- |-|++....+-.+..-..+.+-|++..+.|-.
T Consensus 79 v~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFL 152 (414)
T COG1004 79 VVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFL 152 (414)
T ss_pred EEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHh
Confidence 999999999887332 2467778888888887655 666666 47999877766544322233456676777777
Q ss_pred HHHHHHHHHcCCCCcceEEEEEeecC
Q 018760 186 RFRFLLADHLDVNAQDVQAYIVGEHG 211 (350)
Q Consensus 186 r~~~~la~~l~v~p~~v~~~v~G~hg 211 (350)
|--..+.+.+ .|+. .|+|..+
T Consensus 153 REG~Av~D~~--~PdR---IViG~~~ 173 (414)
T COG1004 153 REGSAVYDFL--YPDR---IVIGVRS 173 (414)
T ss_pred cCcchhhhcc--CCCe---EEEccCC
Confidence 7666666665 4533 5777543
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.28 E-value=2.2e-11 Score=106.96 Aligned_cols=122 Identities=21% Similarity=0.305 Sum_probs=84.0
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh------cC-------CCceEEEcCCccccCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA------FL-------PRTKILASVDYAVTAG 105 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~------~~-------~~~~v~~t~~~~al~~ 105 (350)
||+|||||.||..+|..++..|+ +|+|+|.+++.++.....+.+... .. ...++..++|++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVD 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCT
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhh
Confidence 79999999999999999999996 999999999877654444433110 00 1246777889987779
Q ss_pred CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
||+||.++ .++.++.+++..++.+++|+. .|++||.+.+...-+..... .|+|++|+
T Consensus 79 adlViEai--------------~E~l~~K~~~~~~l~~~~~~~-~ilasnTSsl~i~~la~~~~-~p~R~ig~ 135 (180)
T PF02737_consen 79 ADLVIEAI--------------PEDLELKQELFAELDEICPPD-TILASNTSSLSISELAAALS-RPERFIGM 135 (180)
T ss_dssp ESEEEE-S---------------SSHHHHHHHHHHHHCCS-TT-SEEEE--SSS-HHHHHTTSS-TGGGEEEE
T ss_pred hheehhhc--------------cccHHHHHHHHHHHHHHhCCC-ceEEecCCCCCHHHHHhccC-cCceEEEE
Confidence 99999995 247899999999999997443 34789988884433332333 46777766
No 47
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.17 E-value=2.9e-10 Score=107.07 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCcccc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAVT 103 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~al 103 (350)
..||+|||+|.||..+|..++..|+ +|+|+|++++.++.....+..... .. ...++..+++++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 3599999999999999999999996 999999999887654433332211 00 12356667788889
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++||+||.++ .++.++.+++...++++| +.. .|++||...+....+...+.. |.|++|+
T Consensus 83 ~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~-~~r~~g~ 142 (286)
T PRK07819 83 ADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKR-PGRVLGL 142 (286)
T ss_pred CCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCC-CccEEEE
Confidence 9999999995 346788888888999986 433 345888887754444444332 4555543
No 48
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.16 E-value=3e-10 Score=106.89 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=104.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hhc---------CCCceEEEcCCcccc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AAF---------LPRTKILASVDYAVT 103 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~~---------~~~~~v~~t~~~~al 103 (350)
-+||+|||||.||+.+|+.++..|+ +|+|+|++++.++.....+... ... ....++..+++++++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l 80 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL 80 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence 3699999999999999999999776 9999999987665433322221 110 013456667778899
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee---
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS--- 178 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~--- 178 (350)
++||+||.++ .+|.++.+++..++.+++ |++ |++||.+.+. +.+. ..+ ..|+|++|+
T Consensus 81 ~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia-~~~-~rper~iG~HFf 142 (307)
T COG1250 81 KDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELA-EAL-KRPERFIGLHFF 142 (307)
T ss_pred ccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHH-HHh-CCchhEEEEecc
Confidence 9999999995 468999999999999997 665 5699999984 5444 333 346777743
Q ss_pred ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ---------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ---------------g~~ld~~r~~~~la~~l~v~p 199 (350)
-|.-++...-..+++.++..|
T Consensus 143 NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 143 NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 344556666777888888665
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.14 E-value=5.6e-10 Score=106.40 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=87.8
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----c-----CCCceEEEcCCc-cccCCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----F-----LPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~-----~~~~~v~~t~~~-~al~~aD 107 (350)
.||+|||+|.||+.+|..++..|+ +|+|+|++++.++.....+..... . ....++..++++ +++++||
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 589999999999999999999996 999999998766543332322111 0 012355666677 5789999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG 177 (350)
+|+.++ .++..+.+++...+.+++|... |+.||.+.+....+..... .|.|++|
T Consensus 86 lViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~-~p~R~~g 139 (321)
T PRK07066 86 FIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARAT-HPERCVV 139 (321)
T ss_pred EEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcC-CcccEEE
Confidence 999995 2477888888999999876553 7899999875544444333 3466664
No 50
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.09 E-value=7.2e-10 Score=116.72 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=105.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCccc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYAV 102 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~a 102 (350)
+..||+|||||.||..+|..++..|+ +|+|+|++++.++.....+..... .. ...++..++|+++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34589999999999999999999997 999999999877654333322111 00 1246777888999
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee---
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS--- 178 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~--- 178 (350)
+++||+||.++ .+|.++.+++..++.+++|.. .|++||.+.+. +.++ ..+. .|.|++|+
T Consensus 412 ~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la-~~~~-~p~r~ig~Hff 474 (737)
T TIGR02441 412 FKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPH-CIIASNTSALPIKDIA-AVSS-RPEKVIGMHYF 474 (737)
T ss_pred hccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH-hhcC-CccceEEEecc
Confidence 99999999995 358899999999999997554 45689999984 4444 3333 35677753
Q ss_pred ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ---------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ---------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|..++.-.-..+++.+|..|
T Consensus 475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 355445444566778887765
No 51
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.08 E-value=1.1e-09 Score=114.90 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=104.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----c---C------CCceEEEcCCccc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----F---L------PRTKILASVDYAV 102 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~---~------~~~~v~~t~~~~a 102 (350)
+..||+|||||.||..+|..++..|+ +|+|+|++++.++.....+..... . . ...++..++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 44689999999999999999999997 999999999877643332222110 0 0 1246777888888
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCCcEeee---
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSNRVIGS--- 178 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~rviG~--- 178 (350)
+++||+||.++ .++.++.+++..++.++||.. .|++||.+.+ ++.++. .+. .|.|++|+
T Consensus 390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasnTS~l~i~~ia~-~~~-~p~r~ig~Hff 452 (714)
T TIGR02437 390 FDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVRED-AILASNTSTISISLLAK-ALK-RPENFCGMHFF 452 (714)
T ss_pred hcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHh-hcC-CcccEEEEecC
Confidence 99999999995 357899999999999997554 4579999998 455543 333 35677754
Q ss_pred ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ---------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ---------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|..++.-.-..+++.+|..|
T Consensus 453 ~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 488 (714)
T TIGR02437 453 NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTP 488 (714)
T ss_pred CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 344444444556677777766
No 52
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.08 E-value=9.7e-10 Score=115.61 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=104.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcccc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYAVT 103 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~al 103 (350)
..||+|||||.||..+|..++..|+ +|+|+|++++.++.....+..... .. ...++..++|++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence 4589999999999999999999997 999999999877643333222110 00 12467778889889
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee----
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS---- 178 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~---- 178 (350)
++||+||.++ .++.++.+++..++++++|.. .|++||.+.+. +.++. .+. .|.|++|+
T Consensus 391 ~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la~-~~~-~p~r~~g~Hff~ 453 (715)
T PRK11730 391 ERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTISISLLAK-ALK-RPENFCGMHFFN 453 (715)
T ss_pred cCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHHh-hcC-CCccEEEEecCC
Confidence 9999999995 357899999999999998655 45699999984 55553 333 35677753
Q ss_pred --------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 --------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 --------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|..++.-.-..+++.+|..|
T Consensus 454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~p 488 (715)
T PRK11730 454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTP 488 (715)
T ss_pred cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCce
Confidence 344444444455677777766
No 53
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.06 E-value=1.9e-09 Score=113.20 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHh-cCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILT-QDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYA 101 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~-~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~ 101 (350)
+..||+|||||.||+.+|..++. .|+ +|+|+|++++.++.....+..... .. ...++..+++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 380 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR 380 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH
Confidence 34689999999999999999984 786 999999999876544333322110 00 124677788899
Q ss_pred ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee--
Q 018760 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS-- 178 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~-- 178 (350)
++++||+||.++ .++.++.+++..++.++++.. .|++||.+.+. +.++. ... .|.|++|+
T Consensus 381 ~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la~-~~~-~p~r~~g~Hf 443 (699)
T TIGR02440 381 GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH-TIFASNTSSLPIGQIAA-AAS-RPENVIGLHY 443 (699)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCHHHHHH-hcC-CcccEEEEec
Confidence 999999999995 357899999999999998655 45789999984 44443 333 35677743
Q ss_pred ----------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ----------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ----------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|..++.-.-..+++.+|..|
T Consensus 444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~p 480 (699)
T TIGR02440 444 FSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTP 480 (699)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 344444444456677777766
No 54
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=3.5e-09 Score=99.47 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=82.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH----HHhhcC---------CCceEEEcCCccccC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ----HAAAFL---------PRTKILASVDYAVTA 104 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~----~~~~~~---------~~~~v~~t~~~~al~ 104 (350)
.||+|||+|.||.+++..++..+. +|+++|+++++++.....++ ...... ...++..++++++++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 489999999999999999999986 89999999987753221111 111000 012566677887899
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
+||+||+++. .+..+.+++.+.+.++++...+ ++||-+++....+.+..+. +.|++|+
T Consensus 82 ~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~i-l~s~ts~~~~~~la~~~~~-~~r~ig~ 139 (282)
T PRK05808 82 DADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAI-LATNTSSLSITELAAATKR-PDKVIGM 139 (282)
T ss_pred cCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcE-EEECCCCCCHHHHHHhhCC-CcceEEe
Confidence 9999999952 2456667777788887654433 3788877754444444432 3466654
No 55
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.01 E-value=2.9e-09 Score=111.93 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=103.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcc
Q 018760 36 RHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYA 101 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~ 101 (350)
+..||+|||||.||..+|..++ ..|+ +|+|+|++++.++.....+..... .. ...++..+++++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH
Confidence 3468999999999999999998 7786 999999998866543333322110 00 124677788888
Q ss_pred ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee--
Q 018760 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS-- 178 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~-- 178 (350)
++++||+||.++ .+|.++.+++..+++++++.. .|++||.+.+. +.++. ... .|.|++|+
T Consensus 386 ~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~-~ilasnTS~l~i~~la~-~~~-~p~r~ig~Hf 448 (708)
T PRK11154 386 GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPH-TIFASNTSSLPIGQIAA-AAA-RPEQVIGLHY 448 (708)
T ss_pred HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHH-hcC-cccceEEEec
Confidence 999999999995 358899999999999997443 35689999984 44443 333 34677644
Q ss_pred ----------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ----------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ----------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|+.++.-.-..+++.+|..|
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p 485 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 455555445566677777766
No 56
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.00 E-value=1.2e-09 Score=96.33 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=84.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhh-cCCCceEEEcCCc-cccCCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAA-FLPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~-~~~~~~v~~t~~~-~al~~aD 107 (350)
|||+|||.|.+|.++|..|+..|. +|+-+|+|+++++.+... +..... .....++.+++|. +++++||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 799999999999999999999996 999999999877643210 010000 0013567778887 4699999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHH----HHHHHHhCCCCCcEeeecCC
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILT----YVAWKLSGLPSNRVIGSGTN 181 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~----~~~~~~sg~~~~rviG~g~~ 181 (350)
++|+|+++|.+++.+ -+...+.+.++.|.++ .++.++|+-| -|++..- +++.+.++.. .-|++.-+
T Consensus 79 v~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~la~~ 150 (185)
T PF03721_consen 79 VVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFHLAYS 150 (185)
T ss_dssp EEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEEEEE-
T ss_pred eEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCeEEEC
Confidence 999999998766432 1334445555555554 4566666664 6888765 3444444432 34566455
Q ss_pred ccHHHHHHHHHHHc
Q 018760 182 LDSSRFRFLLADHL 195 (350)
Q Consensus 182 ld~~r~~~~la~~l 195 (350)
.|..+.-+.+.+..
T Consensus 151 PErl~~G~a~~d~~ 164 (185)
T PF03721_consen 151 PERLREGRAIEDFR 164 (185)
T ss_dssp -----TTSHHHHHH
T ss_pred CCccCCCCcchhcc
Confidence 55444445555555
No 57
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.98 E-value=3.4e-09 Score=107.05 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=96.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCccc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAV 102 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~a 102 (350)
+..||+|||+|.||..+|..++..|+ +|+++|+++++++.....+++... .. ...++..++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence 34589999999999999999999996 999999999888654333322111 00 1234666778888
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee----
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS---- 178 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~---- 178 (350)
+++||+||.++ .++..+.+.+...+.+++++. .|++||.+.+....+.+... .|.|++|+
T Consensus 82 l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~-~IlasnTStl~i~~iA~~~~-~p~r~~G~HFf~ 145 (503)
T TIGR02279 82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCPAD-TIIASNTSSLSITAIAAGLA-RPERVAGLHFFN 145 (503)
T ss_pred hCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCC-eEEEECCCCCCHHHHHHhcC-cccceEEEeccC
Confidence 89999999995 245677777778888887665 34788988874333222222 23444443
Q ss_pred --------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 --------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 --------------g~~ld~~r~~~~la~~l~v~p 199 (350)
.|..+.......+++.+|..|
T Consensus 146 Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p 180 (503)
T TIGR02279 146 PAPVMALVEVVSGLATAAEVAEQLYETALAWGKQP 180 (503)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCee
Confidence 223334444455667777655
No 58
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.97 E-value=6.8e-09 Score=97.80 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=82.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC-------CCceEEEcCCc-c
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL-------PRTKILASVDY-A 101 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~-------~~~~v~~t~~~-~ 101 (350)
.+||+|||+|.||..+|..++..|. +|+++|+++++++.....+.+... .. ...++..++|+ +
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 3589999999999999999999885 899999998877644333222111 00 01356667787 4
Q ss_pred ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++++||+||+++. ++.++.+++.+++.+++++.. ++++|.+......+.+... .+.|++|+
T Consensus 81 a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~~~~~~~~-~~~r~vg~ 141 (287)
T PRK08293 81 AVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPSQFAEATG-RPEKFLAL 141 (287)
T ss_pred HhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHHHHHhhcC-CcccEEEE
Confidence 6899999999963 245667777777877765443 3467877764433333333 24566654
No 59
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.95 E-value=5.4e-09 Score=105.84 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=95.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCccc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAV 102 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~a 102 (350)
+..||+|||+|.||..+|..++..|+ +|+++|+++++++.....+..... .. ...++..++++++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34589999999999999999999996 999999999887654333322111 00 0224666778888
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee----
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS---- 178 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~---- 178 (350)
+++||+||.++. ++..+.+.+...+.+.++.. .|++||.+.+-...+..... .|+|++|+
T Consensus 84 ~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~-ailasntStl~i~~la~~~~-~p~r~~G~hff~ 147 (507)
T PRK08268 84 LADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPD-CILATNTSSLSITAIAAALK-HPERVAGLHFFN 147 (507)
T ss_pred hCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcC-CcccEEEEeecC
Confidence 899999999952 45677777777788887443 34567777763333333332 24555543
Q ss_pred --------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 --------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 --------------g~~ld~~r~~~~la~~l~v~p 199 (350)
+|..+.......+++.++..|
T Consensus 148 Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p 182 (507)
T PRK08268 148 PVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182 (507)
T ss_pred CcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCce
Confidence 133334333455667777655
No 60
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.94 E-value=6.9e-09 Score=97.94 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=78.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC--C-------CceEEEcCCcccc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL--P-------RTKILASVDYAVT 103 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~--~-------~~~v~~t~~~~al 103 (350)
.+||+|||+|.||..+|..|+..|. +|+++|+++++++.....+..... .. + ..++..+++++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 4689999999999999999999986 999999999877654333322110 00 0 1235666777889
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++||+||+++.. +..+.+.+.+.+.+++ |++++ +||.+.+....+.+... .+.|++|+
T Consensus 82 ~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~la~~~~-~~~r~~g~ 140 (292)
T PRK07530 82 ADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRLASATD-RPERFIGI 140 (292)
T ss_pred cCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhcC-CcccEEEe
Confidence 999999999631 2344445555666665 55543 46666653223333322 23455543
No 61
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.92 E-value=1.3e-08 Score=96.04 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=80.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-------HhhcC---------CCceEEEcCCcc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-------AAAFL---------PRTKILASVDYA 101 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-------~~~~~---------~~~~v~~t~~~~ 101 (350)
.||+|||+|.||..++..|+..|. +|+++|+++++++.....+.. ..... ...++..+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 589999999999999999999996 899999999887643322221 10000 012355566677
Q ss_pred ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++++||+||+++. .+..+.+++.+++.++++ +++ ++||...+....+..... .+.|++|+
T Consensus 82 ~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~i--l~S~tsg~~~~~la~~~~-~~~r~ig~ 142 (291)
T PRK06035 82 SLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETI--IASNTSGIMIAEIATALE-RKDRFIGM 142 (291)
T ss_pred HhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeE--EEEcCCCCCHHHHHhhcC-CcccEEEE
Confidence 8999999999963 234556667777877764 453 357777664443333322 24566655
No 62
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.91 E-value=2e-08 Score=94.95 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=77.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----hcC---------CCceEEEcCCcccc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----AFL---------PRTKILASVDYAVT 103 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~~~---------~~~~v~~t~~~~al 103 (350)
..||+|||+|.||..+|..|+..|. +|+++|.++++++.....+.... ... ....+..+++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 3589999999999999999999985 99999999987753332222111 000 01134455667889
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++||+||+++. ++..+...+...+.++. |+++ ++||-+.+....+.+..+ .+.|++|+
T Consensus 82 ~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~i--l~s~tS~i~~~~l~~~~~-~~~r~~g~ 140 (295)
T PLN02545 82 RDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAI--LASNTSSISITRLASATQ-RPQQVIGM 140 (295)
T ss_pred CCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcC-CCcceEEE
Confidence 99999999952 23445555556666654 5553 457766663333333322 23455554
No 63
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.86 E-value=1.2e-08 Score=102.13 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aD 107 (350)
+|||+|||+|.||.++|..|++.|...+|+.+|+++++++.+... +.+........++..|+++ +++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 489999999999999999999986444899999999887753211 1111000012247777886 5799999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC-eEEEEE-cCCcchHHHH
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD-CILLIV-ANPVDILTYV 163 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~-tNP~~~~~~~ 163 (350)
++|+|+++|.+++....+ -.-+...+.+.++.|.++.++ .+||+- |.|.+..-.+
T Consensus 81 vi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred EEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 999999999754210000 011345566677777776444 444444 5788876444
No 64
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.82 E-value=2.4e-09 Score=94.87 Aligned_cols=126 Identities=23% Similarity=0.331 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hh--cC------------CCceEE
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AA--FL------------PRTKIL 95 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~--~~------------~~~~v~ 95 (350)
+.+...|+|||||.||+.+|+..++.|+ .|+|+|.+++.|.....-++.. .. +. ...++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 3445679999999999999999999997 9999999998776443333321 10 00 012344
Q ss_pred EcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCC
Q 018760 96 ASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSN 173 (350)
Q Consensus 96 ~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~ 173 (350)
.++|. +++.+||+||.+ +.+|+.+.+++.+++.+.|+.. .|..||.+.+ ++.++. .+ -+|.
T Consensus 86 ~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~lt~ia~-~~-~~~s 148 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSS-TILATNTSSLSLTDIAS-AT-QRPS 148 (298)
T ss_pred HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccc-eEEeecccceeHHHHHh-hc-cChh
Confidence 45676 578899999888 4679999999999999999765 4578999988 555543 22 2456
Q ss_pred cEeee
Q 018760 174 RVIGS 178 (350)
Q Consensus 174 rviG~ 178 (350)
|+.|+
T Consensus 149 rf~Gl 153 (298)
T KOG2304|consen 149 RFAGL 153 (298)
T ss_pred hhcee
Confidence 77766
No 65
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.80 E-value=1.9e-07 Score=84.50 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=69.1
Q ss_pred CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecCC
Q 018760 38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
|||+||| +|.||++++..|++.+ .+|.++++++++++....+..+.... ....++..+++.++++++|+||+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~ 78 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW 78 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH
Confidence 6999997 7999999999999988 49999999998877655444332211 011234434445778999999999631
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~ 159 (350)
..+.++++.+...-++.++|.++||.+.
T Consensus 79 ----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 ----------------DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 1122233333332234678889999764
No 66
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=6.1e-08 Score=92.30 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC--------CCceEEEcCCcc-ccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL--------PRTKILASVDYA-VTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~--------~~~~v~~t~~~~-al~~aD 107 (350)
.+||+|||+|.||..++..|+..+. +|+++|+++++++.....+....... ...++..+++.+ ++++||
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 4689999999999999999999885 89999999987765443332221100 012345556664 689999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
+||+++.. ......++...+..++++.. +++||.+.+....+.+... .+.|++|+
T Consensus 82 lVi~av~~--------------~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~~l~~~~~-~~~~~ig~ 136 (311)
T PRK06130 82 LVIEAVPE--------------KLELKRDVFARLDGLCDPDT-IFATNTSGLPITAIAQAVT-RPERFVGT 136 (311)
T ss_pred EEEEeccC--------------cHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHHHHHhhcC-CcccEEEE
Confidence 99999631 22333444455555544332 3446666654333333322 23566654
No 67
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.76 E-value=6.4e-08 Score=91.19 Aligned_cols=105 Identities=27% Similarity=0.364 Sum_probs=69.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc------C-------CCceEEEcCCc-ccc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF------L-------PRTKILASVDY-AVT 103 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~------~-------~~~~v~~t~~~-~al 103 (350)
.||+|||+|.||..+|..|+..+. +|+++|+++++++.....+...... . ...++..++++ +++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 489999999999999999999985 8999999998876543332221100 0 01235556677 579
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~ 159 (350)
++||+||+++.. +..+.+.+...+.++++... ++++|.+.+
T Consensus 80 ~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~-il~~~tSt~ 120 (288)
T PRK09260 80 ADADLVIEAVPE--------------KLELKKAVFETADAHAPAEC-YIATNTSTM 120 (288)
T ss_pred cCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence 999999999631 23444555556666654432 245565554
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.70 E-value=1.4e-07 Score=95.51 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---h------cCCCceEEEcCCc-cccCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---A------FLPRTKILASVDY-AVTAGS 106 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~------~~~~~~v~~t~~~-~al~~a 106 (350)
.+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.... . .....++..++++ +++++|
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence 3589999999999999999999996 99999999987764322111110 0 0011235556677 579999
Q ss_pred CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH
Q 018760 107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW 165 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~ 165 (350)
|+||.++. ++..+.+.+...+.+++++. .|+.||.+++....+.
T Consensus 82 D~Vieavp--------------e~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l~ 125 (495)
T PRK07531 82 DWIQESVP--------------ERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDLQ 125 (495)
T ss_pred CEEEEcCc--------------CCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH
Confidence 99999952 23455556666677776555 3567888776443333
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.66 E-value=3.1e-08 Score=85.04 Aligned_cols=110 Identities=22% Similarity=0.398 Sum_probs=72.6
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---cCC----CceEEEcCCc-cccCCCCEEE
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---FLP----RTKILASVDY-AVTAGSDLCI 110 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~----~~~v~~t~~~-~al~~aDiVI 110 (350)
||+|+|||+.|.++|..|+.++. +|.|++++++.++ ++++... +.+ ..++..++|. +++++||+||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~--~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH--EVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE--EEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC--EEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEE
Confidence 89999999999999999999994 9999999986555 3443221 111 2356677887 6799999999
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcC-----CcchHHHHHHHHhCC
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVAN-----PVDILTYVAWKLSGL 170 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN-----P~~~~~~~~~~~sg~ 170 (350)
++.. ....++++++|..+- ++..+++++- ..-.+..++.+..+.
T Consensus 75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~ 124 (157)
T PF01210_consen 75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPI 124 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSS
T ss_pred eccc----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhh
Confidence 9963 233455666677664 4555655542 223466777666543
No 70
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.65 E-value=2.2e-07 Score=88.51 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=71.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH----HHhh--cC-------CCceEEEcCCc-ccc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ----HAAA--FL-------PRTKILASVDY-AVT 103 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~----~~~~--~~-------~~~~v~~t~~~-~al 103 (350)
+||+|||+|.||.+++..|+..|. +|+++|+++++++.....+. .... .. ...++..++++ +++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 589999999999999999999986 89999999876654322111 1100 00 01235556677 468
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHH
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVA 164 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~ 164 (350)
++||+|+.+... +..+.+.+...+.+.+++.+++ .||........+
T Consensus 81 ~~ad~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~l 126 (308)
T PRK06129 81 ADADYVQESAPE--------------NLELKRALFAELDALAPPHAIL-ASSTSALLASAF 126 (308)
T ss_pred CCCCEEEECCcC--------------CHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHH
Confidence 999999999621 2334444555566666655444 576665544333
No 71
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.61 E-value=9.1e-08 Score=74.79 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=64.8
Q ss_pred eEEEEcCChhHHHHHHHHHhcCC-CCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDF-VEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
||+|||+|+||.+++..|+..+. -.+|.++ ++++++++. +.... ...+...+..++++.||+||+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~----~~~~~----~~~~~~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE----LAKEY----GVQATADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH----HHHHC----TTEEESEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH----HHHhh----ccccccCChHHhhccCCEEEEEEC--
Confidence 89999999999999999999883 2388866 999987763 44332 234442234478899999999962
Q ss_pred cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
| ..+.++++.+....++.++|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 2 2234445555444678888888876
No 72
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=98.56 E-value=6.3e-07 Score=81.90 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760 274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT 340 (350)
Q Consensus 274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~ 340 (350)
..++.+|.++.+.++.+||.|+|.. ++| +|.++++||+|+++|++++...+|++....+++.....
T Consensus 140 ~~~i~~i~~~~~~~~~vNv~N~G~I~nLp-~davVEvp~~v~~~Gi~P~~~g~lP~~~~~li~~~~~~ 206 (232)
T PF11975_consen 140 EAAIEAIYNDKPKRFVVNVPNNGAIPNLP-DDAVVEVPCYVDGDGIHPVAVGPLPPAIAGLIQQVKAY 206 (232)
T ss_dssp HHHHHHHHHSSEEEEEEEEE-TTSSTTS--TTSEEEEEEEEETTEEEEB-SB---HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEECCCCCccCCCC-CCcEEEEEEEEcCCeeEeccCCCCCHHHHHHHHHHHHH
Confidence 4456666999999999999999995 898 69999999999999999999999999998876655443
No 73
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.50 E-value=6.8e-07 Score=87.69 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=75.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCCE
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSDL 108 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aDi 108 (350)
|||+|||+|.||.++|..++. |. +|+.+|+++++++..... +++... ....++..+++. +++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~-~~~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQ-SDKIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHH-hCCCcEEEecchhhhhcCCCE
Confidence 699999999999999987775 63 899999999887743321 111100 013356555565 56899999
Q ss_pred EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHH
Q 018760 109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAW 165 (350)
Q Consensus 109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~ 165 (350)
||++++.|....... -+...+++.++.|.+..|+.++|+-| -|.+..-.+..
T Consensus 77 vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~ 129 (388)
T PRK15057 77 VIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHK 129 (388)
T ss_pred EEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHH
Confidence 999988764221111 13344444445555545666666664 67777655543
No 74
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.48 E-value=1.3e-06 Score=82.74 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=89.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH--hh-cC----CCceEEEcCCc-cccCCCCE
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA--AA-FL----PRTKILASVDY-AVTAGSDL 108 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~--~~-~~----~~~~v~~t~~~-~al~~aDi 108 (350)
++||+|||+|+-|+++|..|+.++ .+|+|..++++..+ +++.. .. |. .+..+.+++|. +++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~----~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVA----EINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHH----HHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 479999999999999999999999 49999999987555 34432 11 22 24567788887 67889999
Q ss_pred EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-----CCcchHHHHHHHHhCCCCCcEeeecCCc
Q 018760 109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-----NPVDILTYVAWKLSGLPSNRVIGSGTNL 182 (350)
Q Consensus 109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-----NP~~~~~~~~~~~sg~~~~rviG~g~~l 182 (350)
||++.. ...++++++++..+ .++..++.+| ++...+++++.+..+ .++ +++-. -
T Consensus 75 iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~--~~~-~~vLS-G 134 (329)
T COG0240 75 IVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP--DNP-IAVLS-G 134 (329)
T ss_pred EEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC--CCe-EEEEE-C
Confidence 999963 34566667777544 5777888887 234456777777643 334 44412 2
Q ss_pred cHHHHHHHHHHH
Q 018760 183 DSSRFRFLLADH 194 (350)
Q Consensus 183 d~~r~~~~la~~ 194 (350)
+ .+-.++|+.
T Consensus 135 P--s~A~EVa~g 144 (329)
T COG0240 135 P--SFAKEVAQG 144 (329)
T ss_pred c--cHHHHHhcC
Confidence 2 345556554
No 75
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.47 E-value=1.8e-06 Score=76.59 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=66.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
+|+++|+|+|++|.+++..++..+. ||.+-.++.++ +++....+ ...++..+..++.+.||+||+++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--------~~~i~~~~~~dA~~~aDVVvLAVP~ 70 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--------GPLITGGSNEDAAALADVVVLAVPF 70 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--------ccccccCChHHHHhcCCEEEEeccH
Confidence 5799999999999999999999995 99988776543 33222111 2236656667899999999999743
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~ 158 (350)
. ....+ .+.+...-.+-++|-.|||.+
T Consensus 71 ~------------a~~~v----~~~l~~~~~~KIvID~tnp~~ 97 (211)
T COG2085 71 E------------AIPDV----LAELRDALGGKIVIDATNPIE 97 (211)
T ss_pred H------------HHHhH----HHHHHHHhCCeEEEecCCCcc
Confidence 2 22333 344444333677888999953
No 76
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.46 E-value=2.3e-06 Score=82.70 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCC-----CceEEEcCCc-cccC
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLP-----RTKILASVDY-AVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~-----~~~v~~t~~~-~al~ 104 (350)
.+++|||+|||+|++|++++..|+..+ +++++.++++..+. ++... .+.+ ..++..++|. ++++
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~----i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~ 76 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADD----INDNHRNSRYLGNDVVLSDTLRATTDFAEAAN 76 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHH----HHhcCCCcccCCCCcccCCCeEEECCHHHHHh
Confidence 456789999999999999999999887 57888888765543 33211 1111 1245566676 5789
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch-----HHHHHHHH
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI-----LTYVAWKL 167 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~-----~~~~~~~~ 167 (350)
++|+||+++. ...++++++++..+ .++..+|.++|..+. +...+.+.
T Consensus 77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~ 129 (341)
T PRK12439 77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV 129 (341)
T ss_pred cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence 9999999963 23345555555554 567778889987764 34555554
No 77
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.45 E-value=2.2e-06 Score=85.06 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cC--------CCceEEEcCCccccC
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FL--------PRTKILASVDYAVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~--------~~~~v~~t~~~~al~ 104 (350)
+.++|||+|||.|.||.++|..|+. + .+|+.||+++++++. ++.... +. ...++.++++.++++
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~----l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~ 75 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILE----LKNGVDVNLETTEEELREARYLKFTSEIEKIK 75 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHH----HHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc
Confidence 4566999999999999999999877 4 399999999988764 332110 00 012355666777899
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchHH
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDILT 161 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~~ 161 (350)
+||++|++++.|.+.... .+...+....+.|.++ .+..++|+- |-|.+...
T Consensus 76 ~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~ 128 (425)
T PRK15182 76 ECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE 128 (425)
T ss_pred CCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH
Confidence 999999999988643211 1223333333444443 345666555 45665543
No 78
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.42 E-value=3.9e-06 Score=78.98 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=66.9
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||..++. .... ..+..||+|+|||.+|+++++.|+..+. .+|+++|++.++++..+.++.+... .
T Consensus 109 TD~~G~~~~l~----~~~~---~~~~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~---~ 177 (284)
T PRK12549 109 TDWSGFAESFR----RGLP---DASLERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP---A 177 (284)
T ss_pred CCHHHHHHHHH----hhcc---CccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC---C
Confidence 47888887775 2222 2344689999999999999999999885 6899999999999887777765431 2
Q ss_pred ceEEEcCCc-cccCCCCEEEEec
Q 018760 92 TKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 92 ~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
..+....+. +.++++|+||.+.
T Consensus 178 ~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 178 ARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred eEEEeccchHhhhCCCCEEEECC
Confidence 333322333 4688999999994
No 79
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.39 E-value=2.8e-06 Score=73.23 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=47.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
|+||++||.|.||+.++..|+..++ +|+.||+++++++. +.+.. +....+. +.+++||+|+.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~----~~~~g-------~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEA----LAEAG-------AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHH----HHHTT-------EEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhh----hHHhh-------hhhhhhhhhHhhcccceEeec
Confidence 5799999999999999999999996 99999999876653 44321 3333455 6788999999995
No 80
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.38 E-value=3.4e-06 Score=83.48 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=73.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhc-CCCceEEEcCCc-cccCCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAF-LPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~-~~~~~v~~t~~~-~al~~aD 107 (350)
|||+|||+|.||.++|..|+..|. +|+.+|+++++++..... +...... ....++..++++ +++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~--~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH--EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC--eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 589999999999999999999986 899999999877643211 0000000 001235556676 4689999
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchH
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDIL 160 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~ 160 (350)
+||++++.|..+... -+...+.+..+.+.+. .++.++++.| -|.+..
T Consensus 79 vvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~ 127 (411)
T TIGR03026 79 VIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLESTVPPGTT 127 (411)
T ss_pred EEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCch
Confidence 999999877543211 1234444455555554 4556666654 455544
No 81
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.34 E-value=2.7e-06 Score=80.29 Aligned_cols=105 Identities=25% Similarity=0.353 Sum_probs=66.9
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCC--ceEEEcCCccccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPR--TKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~--~~v~~t~~~~al~~aDiVIi~~g 114 (350)
|||+|||+|.||..++..|.+.|. +|.++|+++++++..... .... ... ..+..+++.++++++|+||++..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNEN---GLRLEDGEITVPVLAADDPAELGPQDLVILAVK 75 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHc---CCcccCCceeecccCCCChhHcCCCCEEEEecc
Confidence 689999999999999999999884 999999987765532211 1100 000 11122344444589999999964
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHH
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYV 163 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~ 163 (350)
... ..++++.+..+ .++..||...|.++....+
T Consensus 76 ~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l 109 (304)
T PRK06522 76 AYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL 109 (304)
T ss_pred ccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 221 12233333432 5677888899998765433
No 82
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=1e-05 Score=77.79 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHh-hcCCCceEEEcCCccccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAA-AFLPRTKILASVDYAVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~-~~~~~~~v~~t~~~~al~~aD 107 (350)
.++|+|||.|.||.++|..++.+|. +|+=+|+|+.+++.+-. ++.... ......++++|+|.+.++.||
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence 3799999999999999999999996 89999999987764311 111100 001245688899999999999
Q ss_pred EEEEecCCCcCc-cccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchHHHH---HHHH-hCCCCCcEeeecC
Q 018760 108 LCIVTAGARQIA-GESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDILTYV---AWKL-SGLPSNRVIGSGT 180 (350)
Q Consensus 108 iVIi~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~~~~---~~~~-sg~~~~rviG~g~ 180 (350)
++|+|+.+|.+. .+..+ ..+.+.++.|.++ .+..+||+= |-|.+.+-.+ +.+. +|+.-.+-|+++-
T Consensus 87 v~iI~VPTPl~~~~~pDl-------s~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay 159 (436)
T COG0677 87 VFIICVPTPLKKYREPDL-------SYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY 159 (436)
T ss_pred EEEEEecCCcCCCCCCCh-------HHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence 999999888654 23333 3444455555554 344544444 5677664333 2333 6655445556644
Q ss_pred Cc
Q 018760 181 NL 182 (350)
Q Consensus 181 ~l 182 (350)
..
T Consensus 160 sP 161 (436)
T COG0677 160 SP 161 (436)
T ss_pred Cc
Confidence 43
No 83
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.33 E-value=2.9e-06 Score=80.98 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=67.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---cCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---FLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
||||+|||+|.||..++..|+..+. +|.++|+++++++.......+... ......+..+++. +.+++||+||++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 4799999999999999999999885 899999998766543222101000 0001124445565 467899999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI 159 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~ 159 (350)
... ..+.++.+.+..+ .++.++|..+|.++.
T Consensus 79 v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 79 VPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred CCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 631 1223333444443 467788888876553
No 84
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.28 E-value=3.6e-06 Score=80.68 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCCCceEEEcCCc-ccc-CCCCEEEEe
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLPRTKILASVDY-AVT-AGSDLCIVT 112 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~~~~v~~t~~~-~al-~~aDiVIi~ 112 (350)
|||+|||||.+|++++..|.+.+. +|.|++++++.++....+-.+.. .......+..+++. +++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 689999999999999999999984 89999998876553222100010 00012235555666 455 589999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhc-c-CCCeEEEEEcCCcch
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVK-Y-SPDCILLIVANPVDI 159 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~-~p~a~viv~tNP~~~ 159 (350)
+. ..-+.++++.+.. + .++..++..+|-.+.
T Consensus 79 vk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 79 VP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 62 1223344444443 3 567778888888754
No 85
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.27 E-value=1.5e-05 Score=78.96 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhh-cCCCceEEEcCCccccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAA-FLPRTKILASVDYAVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~-~~~~~~v~~t~~~~al~~aD 107 (350)
.+||+|||+|.||.++|..|++.|. +|+.+|+++++++.... ++..... ......+..+++ +++||
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~---~~~aD 77 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTT---PEPAD 77 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecc---cccCC
Confidence 4799999999999999999999985 99999999988774211 0111000 000123444433 45899
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHHHH
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILTYV 163 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~~~ 163 (350)
+||++.+.|.++..+ .+...+.+.++.|.++ .++.+||+-| .|.+..-.+
T Consensus 78 vvii~vptp~~~~~~------~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~ 129 (415)
T PRK11064 78 AFLIAVPTPFKGDHE------PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM 129 (415)
T ss_pred EEEEEcCCCCCCCCC------cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence 999999887643211 1234445555555554 4566666664 577665433
No 86
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.26 E-value=5.4e-06 Score=79.56 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=65.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
+|||+|||+|.||.+++..|+..+. +|+++|+++++++.....-.+.. ......++..+++. ++++++|+||++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 5799999999999999999999885 89999999876654321111100 00011125555565 568999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~ 158 (350)
.... .++++.+. ..|..++|.++|..+
T Consensus 82 v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 82 VPSK----------------ALRETLAG---LPRALGYVSCAKGLA 108 (328)
T ss_pred CchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence 6311 11333332 235667888888654
No 87
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.21 E-value=1.6e-05 Score=77.28 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCC-----CCeEEEEeCCccc-hHHHHHHHHHHh---hcC----CCceEEEcCCc
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDF-----VEELALVDAKADK-LRGEMLDLQHAA---AFL----PRTKILASVDY 100 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~-----~~ev~L~D~~~~~-l~~~~~dl~~~~---~~~----~~~~v~~t~~~ 100 (350)
..+.+||+|||+|+.|+++|..|..++. ..+|.|+.++++. -+..+.++++.. .+. ...++.+++|.
T Consensus 8 ~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 3456899999999999999999998862 2489999998752 112344555322 122 23467777887
Q ss_pred -cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc--c-CCCeEEEEEcCCc-------chHHHHHHHHh
Q 018760 101 -AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK--Y-SPDCILLIVANPV-------DILTYVAWKLS 168 (350)
Q Consensus 101 -~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~--~-~p~a~viv~tNP~-------~~~~~~~~~~s 168 (350)
+++++||+||+++. ...++++++++.. + .+++++|.++--. ..++.++.+..
T Consensus 88 ~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l 150 (365)
T PTZ00345 88 KEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL 150 (365)
T ss_pred HHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh
Confidence 57999999999962 2445666677765 3 3455666664221 23556665554
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.20 E-value=7e-06 Score=69.66 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=63.4
Q ss_pred CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760 13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT 92 (350)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~ 92 (350)
||.||..+|. +... ..+.++|.|+|+|.+|..++..|...+ ..+|.++|+++++++....++.... .
T Consensus 2 d~~g~~~a~~----~~~~---~~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~-----~ 68 (155)
T cd01065 2 DGLGFVRALE----EAGI---ELKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG-----I 68 (155)
T ss_pred CHHHHHHHHH----hhCC---CCCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc-----c
Confidence 6777777777 4443 344579999999999999999998886 4589999999887765443333210 1
Q ss_pred eEEEcCCc-cccCCCCEEEEecCCCc
Q 018760 93 KILASVDY-AVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 93 ~v~~t~~~-~al~~aDiVIi~~g~~~ 117 (350)
.... .+. +.++++|+||++.+.+.
T Consensus 69 ~~~~-~~~~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 69 AIAY-LDLEELLAEADLIINTTPVGM 93 (155)
T ss_pred ceee-cchhhccccCCEEEeCcCCCC
Confidence 1222 233 45799999999976543
No 89
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.19 E-value=9e-06 Score=78.29 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=65.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hhc-C--------CCceEEEcCCccccCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AAF-L--------PRTKILASVDYAVTAGS 106 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~~-~--------~~~~v~~t~~~~al~~a 106 (350)
+|||+|||+|.||..++..|.+.|. +|.++|+++. .+. +... ... . ...++..+++.++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~--~V~~~~r~~~-~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA--DVTLIGRARI-GDE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--cEEEEecHHH-HHH----HHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence 4799999999999999999999985 8999998642 221 2211 000 0 01134445566778999
Q ss_pred CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHH
Q 018760 107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILT 161 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~ 161 (350)
|+||++...+. ..++ ++.+..+ .++.+++..+|..+...
T Consensus 75 D~vil~vk~~~------------~~~~----~~~l~~~~~~~~iii~~~nG~~~~~ 114 (341)
T PRK08229 75 DLVLVTVKSAA------------TADA----AAALAGHARPGAVVVSFQNGVRNAD 114 (341)
T ss_pred CEEEEEecCcc------------hHHH----HHHHHhhCCCCCEEEEeCCCCCcHH
Confidence 99999974321 1122 3334443 56677778889876543
No 90
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.18 E-value=8.2e-06 Score=77.18 Aligned_cols=113 Identities=21% Similarity=0.322 Sum_probs=70.2
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hhc-CC--C--ceEEEcCCcc-ccCCCCEEE
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AAF-LP--R--TKILASVDYA-VTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~~-~~--~--~~v~~t~~~~-al~~aDiVI 110 (350)
|||+|||+|.+|..++..|.+.+. +|.++++ +++++. +.+. ... .. . .....+++.+ ..+++|+||
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 73 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKA----LRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVI 73 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHH----HHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEE
Confidence 699999999999999999999884 8999999 666553 2221 100 00 1 0111233444 358999999
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEe
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVI 176 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rvi 176 (350)
++..... +.++.+.+..+ .++.++|.+.|.++....+. ++ ++.++++
T Consensus 74 lavk~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~-~~--~~~~~v~ 121 (305)
T PRK12921 74 LAVKAYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE-PY--FGRERVL 121 (305)
T ss_pred EEecccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH-Hh--CCcccEE
Confidence 9964221 22233344443 46677888899887544332 33 4555666
No 91
>PRK07680 late competence protein ComER; Validated
Probab=98.09 E-value=2.2e-05 Score=73.35 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=64.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+|||+|.||..++..|...+.+ .+|.++|+++++++. +.+.. +..++ +.+. +.++++|+||+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~----~~~~~---~g~~~--~~~~~~~~~~aDiVilav~ 71 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH----IKERY---PGIHV--AKTIEEVISQSDLIFICVK 71 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH----HHHHc---CCeEE--ECCHHHHHHhCCEEEEecC
Confidence 5899999999999999999988742 479999999876643 22211 11222 3344 55889999999962
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcc
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVD 158 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~ 158 (350)
| ..+.++.+.+..+ .++.++|.++|++.
T Consensus 72 ----p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ----P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 2 1123333444433 46678888898775
No 92
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.07 E-value=1.5e-05 Score=76.89 Aligned_cols=115 Identities=20% Similarity=0.321 Sum_probs=72.6
Q ss_pred eEEEEcCChhHHHHHHHHHhcC------CCCeEEEEeCCccc-hHHHHHHHHHHh--h-cCC----CceEEEcCCc-ccc
Q 018760 39 KISVIGTGNVGMAIAQTILTQD------FVEELALVDAKADK-LRGEMLDLQHAA--A-FLP----RTKILASVDY-AVT 103 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~------~~~ev~L~D~~~~~-l~~~~~dl~~~~--~-~~~----~~~v~~t~~~-~al 103 (350)
||+|||+|+.|+++|..|+.++ +..+|.|+.++++. -+.....++... . +.+ ..++.+++|. +++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999876 22499999985421 011233343221 1 222 2356777887 578
Q ss_pred CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC---C----cchHHHHHHHHhC
Q 018760 104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN---P----VDILTYVAWKLSG 169 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN---P----~~~~~~~~~~~sg 169 (350)
++||+||+++. ...++++++++..+ .++..+|.++- + .-.+..++.+..+
T Consensus 81 ~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~ 138 (342)
T TIGR03376 81 KGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG 138 (342)
T ss_pred hcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC
Confidence 99999999952 24455556666654 45556666652 2 2345666666543
No 93
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.05 E-value=2.7e-05 Score=74.14 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=58.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
..|||+|||+|.+|++++..|...|. +|.++|+++. .+. +++++||+||++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~--~V~~~~r~~~------------------------~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH--RVRVWSRRSG------------------------LSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC--EEEEEeCCCC------------------------CCHHHHHhcCCEEEEECC
Confidence 45899999999999999999999985 9999999753 123 45789999999963
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhc--cCCCeEEEEEcCC
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVK--YSPDCILLIVANP 156 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~--~~p~a~viv~tNP 156 (350)
. ..++++++.+.. ..++.+++..|+.
T Consensus 57 ~----------------~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 M----------------KGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred h----------------HHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 1 234444455553 3567788888873
No 94
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.04 E-value=3.7e-05 Score=73.37 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc---CCCc---eEEEcCCccccCCCCEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF---LPRT---KILASVDYAVTAGSDLC 109 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~---~~~~---~v~~t~~~~al~~aDiV 109 (350)
+.|||+|||+|.+|..++..|...+. +|.++++++. +... ...... .... .+..+++.++...+|+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVR---ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHH---hCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 44799999999999999999999884 9999999752 2211 111000 0111 12233344567889999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG 177 (350)
|++..... ... ..+.+.. ..|++.++...|-++..-.+. ++ +|+.+|++
T Consensus 77 ilavK~~~------------~~~----~~~~l~~~~~~~~~iv~lqNG~~~~e~l~-~~--~~~~~v~~ 126 (313)
T PRK06249 77 LVGLKTTA------------NAL----LAPLIPQVAAPDAKVLLLQNGLGVEEQLR-EI--LPAEHLLG 126 (313)
T ss_pred EEEecCCC------------hHh----HHHHHhhhcCCCCEEEEecCCCCcHHHHH-HH--CCCCcEEE
Confidence 99964221 112 2223333 257888888999887644443 33 46667663
No 95
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.00 E-value=2.7e-05 Score=73.03 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=48.8
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
|||+|||+|.||..++..|...+. +|.++|++++.++. +.... ... ..+++.+.+++||+||++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~----a~~~g----~~~-~~~~~~~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCER----AIERG----LVD-EASTDLSLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHCC----Ccc-cccCCHhHhcCCCEEEEcCC
Confidence 589999999999999999999885 89999998876543 22111 011 12334567899999999963
No 96
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.00 E-value=5.1e-05 Score=72.17 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--HHHHhhcCCCceEEE-cCCccccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--LQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--l~~~~~~~~~~~v~~-t~~~~al~~aDiVIi~~ 113 (350)
.|||+|+|+|.||..++..|...|. +|.|+++..++++....+ +. .........+.. ..+.+.....|+||+|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeE-EeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 5799999999999999999999885 899999987666532211 10 000000011111 11123356889999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
-.. .+. +..+.+..+ .+++.++.+.|-++....+.. + ++.+++++-
T Consensus 79 K~~------------~~~----~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~-~--~~~~~v~~g 125 (305)
T PRK05708 79 KAY------------DAE----PAVASLAHRLAPGAELLLLQNGLGSQDAVAA-R--VPHARCIFA 125 (305)
T ss_pred CHH------------hHH----HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH-h--CCCCcEEEE
Confidence 211 112 233344443 578889999999987655543 3 455677643
No 97
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.00 E-value=1.9e-05 Score=75.17 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=74.5
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH---HHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD---LQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d---l~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
|||+|+|||.||+.+++.|.+.+ .+|.++-+++. +++...+ +.+... ........+++.+....+|+||++.-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEEEEEec
Confidence 79999999999999999999999 47777777653 4432111 111100 00112222334567789999999963
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEe-eecCCc
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVI-GSGTNL 182 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rvi-G~g~~l 182 (350)
..+ ..+..+.+..+ .|+.+|+.+-|-.+..- .+.++ ++.++|+ |+ |..
T Consensus 77 ----a~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~--~~~~~il~G~-~~~ 126 (307)
T COG1893 77 ----AYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI--LPKETVLGGV-TTH 126 (307)
T ss_pred ----ccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh--CCcceEEEEE-eee
Confidence 211 12334455554 57778999999998876 44444 4444444 45 443
No 98
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.98 E-value=3.8e-05 Score=71.35 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=62.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
+|||+|||+|.||..++..|...+. ..+|.++|+++++++. +.+.. ..++ +.+. +.+.++|+||++..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~----~~~~~----g~~~--~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA----LAEEY----GVRA--ATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH----HHHhc----CCee--cCChHHHHhcCCEEEEEcC
Confidence 5799999999999999999988773 2479999999876543 32211 1122 3344 45789999999962
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~ 158 (350)
+ ..++++.+.+..+. +..|+.++|...
T Consensus 72 ----~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ----P------------QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ----H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 1 22334444444333 456777777664
No 99
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.97 E-value=7.1e-05 Score=70.04 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=47.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
|||+|||+|.||..++..|...+...+|+.+|+++++++. +.... .... ..+.+++.+||+||++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~----~~~~g----~~~~--~~~~~~~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK----ALELG----LVDE--IVSFEELKKCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH----HHHCC----CCcc--cCCHHHHhcCCEEEEeC
Confidence 5899999999999999999998864579999998876542 22111 0111 22444455699999996
No 100
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.92 E-value=7.2e-05 Score=70.00 Aligned_cols=67 Identities=19% Similarity=0.425 Sum_probs=49.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
.+||++||+|+||.+++..|++.+. ..+|+.+|+++++++. +.+.. ..++ +++. +.+++||+||++.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~----l~~~~----g~~~--~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN----ASDKY----GITI--TTNNNEVANSADILILSI 71 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH----HHHhc----CcEE--eCCcHHHHhhCCEEEEEe
Confidence 3589999999999999999998884 3579999998876542 32211 1222 3344 5678999999996
No 101
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.90 E-value=0.00014 Score=69.14 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=49.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
.+||+|||+|.||..++..|...+...+|.++|+++++++. +.. .. ....+ +.+. +.+++||+||+++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~----a~~-~g--~~~~~--~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRAR----ARE-LG--LGDRV--TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH----HHh-CC--CCcee--cCCHHHHhcCCCEEEECCC
Confidence 36999999999999999999988865589999999876542 111 11 01111 2344 56899999999964
No 102
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.90 E-value=4.7e-05 Score=63.58 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
.+..++.|||||.+|+.++..|...+. .+|++++++.++++..+..+.. ....+....+. +.+.++|+||.+.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~-----~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG-----VNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG-----CSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc-----cccceeeHHHHHHHHhhCCeEEEec
Confidence 356799999999999999999999986 5899999999888765555511 12344444454 4688999999997
Q ss_pred CCCc
Q 018760 114 GARQ 117 (350)
Q Consensus 114 g~~~ 117 (350)
+.+.
T Consensus 84 ~~~~ 87 (135)
T PF01488_consen 84 PSGM 87 (135)
T ss_dssp STTS
T ss_pred CCCC
Confidence 6543
No 103
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.89 E-value=7.3e-05 Score=69.44 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=48.2
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCC--CCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDF--VEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
|||++||+|.||.+++..|+..+. ..+|+++ |+++++++. +.. . ..++ +++. +.+++||+||++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~----~~~-~----g~~~--~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDV----FQS-L----GVKT--AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHH----HHH-c----CCEE--eCChHHHHhcCCEEEEEE
Confidence 789999999999999999998874 3478888 888776542 222 1 1222 3344 5678999999997
No 104
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00028 Score=68.76 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~al~~aDiVIi~~ 113 (350)
++||.|||||.||+.+|..|++++- .+|++.|++.++++........... ...+-+... . +.+++.|+||.++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~---~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVE---ALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccce---eEEecccChHHHHHHHhcCCEEEEeC
Confidence 5799999999999999999999986 6999999998877643222111110 111222211 2 5689999999997
Q ss_pred CC
Q 018760 114 GA 115 (350)
Q Consensus 114 g~ 115 (350)
+.
T Consensus 77 p~ 78 (389)
T COG1748 77 PP 78 (389)
T ss_pred Cc
Confidence 53
No 105
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.87 E-value=0.00012 Score=67.05 Aligned_cols=68 Identities=22% Similarity=0.387 Sum_probs=47.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDF--VEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV 111 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi 111 (350)
+.+||+|||+|.+|.+++..++..+. ..+++++++ ++++++ ++.+.. ..+ .+++. +.++++|+||+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~----~~~--~~~~~~~~~~~~DiVii 72 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD----QLQARY----NVS--TTTDWKQHVTSVDTIVL 72 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH----HHHHHc----CcE--EeCChHHHHhcCCEEEE
Confidence 35799999999999999999988763 334777876 455544 233221 122 23455 56889999999
Q ss_pred ec
Q 018760 112 TA 113 (350)
Q Consensus 112 ~~ 113 (350)
+.
T Consensus 73 av 74 (245)
T PRK07634 73 AM 74 (245)
T ss_pred ec
Confidence 95
No 106
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.84 E-value=9.3e-05 Score=68.64 Aligned_cols=95 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
++||++||+|+||.+++..|...+. ..+|+..|+++++++ ++..... ..+ +++. +....+|+||+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~----~l~~~~g----~~~--~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA----ALAAEYG----VVT--TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH----HHHHHcC----Ccc--cCcHHHHHhhCCEEEEEe
Confidence 4799999999999999999999983 359999999988765 3443321 122 4454 6788999999997
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
|| ..+.++.+.++...++.++|.+.=.+
T Consensus 71 ----KP------------q~~~~vl~~l~~~~~~~lvISiaAGv 98 (266)
T COG0345 71 ----KP------------QDLEEVLSKLKPLTKDKLVISIAAGV 98 (266)
T ss_pred ----Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence 55 34556666666655666666554333
No 107
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.84 E-value=0.00015 Score=69.29 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCCCeEEEEeCCccchH-------HHHHHHHH----Hhhc--C-------CCceEEEcCC--c-cccC
Q 018760 48 VGMAIAQTILTQDFVEELALVDAKADKLR-------GEMLDLQH----AAAF--L-------PRTKILASVD--Y-AVTA 104 (350)
Q Consensus 48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-------~~~~dl~~----~~~~--~-------~~~~v~~t~~--~-~al~ 104 (350)
||..+|..++..|+ +|+|+|++++.++ .....+.. .... . ...++..+++ . ++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 68899999999996 9999999986422 11112211 1100 0 1234555543 3 6789
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee------
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS------ 178 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~------ 178 (350)
+||+||.++ .++..+.+.+..++.+.++...+ ++||.+.+....+..... .|.|++|+
T Consensus 79 ~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~i-laSntS~~~~~~la~~~~-~p~r~~g~Hf~~Pp 142 (314)
T PRK08269 79 DADLVFEAV--------------PEVLDAKREALRWLGRHVDADAI-IASTTSTFLVTDLQRHVA-HPERFLNAHWLNPA 142 (314)
T ss_pred cCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcE-EEEccccCCHHHHHhhcC-CcccEEEEecCCcc
Confidence 999999995 24678888888889888644433 389988875544444333 23555543
Q ss_pred ------------cCCccHHHHHHHHHHHcCCCC
Q 018760 179 ------------GTNLDSSRFRFLLADHLDVNA 199 (350)
Q Consensus 179 ------------g~~ld~~r~~~~la~~l~v~p 199 (350)
+|.-+.......+.+.+|..|
T Consensus 143 ~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~ 175 (314)
T PRK08269 143 YLMPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (314)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 333333333455566677654
No 108
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.78 E-value=0.0001 Score=69.83 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=61.0
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-CCc-cccCCCCEEEEecCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-VDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~~~-~al~~aDiVIi~~g~ 115 (350)
|||+|||+|.||.+++..|+..+. +|.++|+++++++. +.... .....+ .+. +.++++|+|+++...
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~--~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH--DCVGYDHDQDAVKA----MKEDR-----TTGVANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHcC-----CcccCCHHHHHhhcCCCCEEEEEcCc
Confidence 589999999999999999999985 89999999987653 32211 111111 122 346789999999531
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV 157 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~ 157 (350)
..++++++.+... .++.++|..||..
T Consensus 70 ----------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 ----------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred ----------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 1233333344443 4667888887754
No 109
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.77 E-value=0.00018 Score=67.38 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=62.6
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~ 117 (350)
+||++||.|.||.++|..|+..|+ +++.+|+++++... .+...- .... .+..++.++||+||.+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~--~v~v~~r~~~ka~~---~~~~~G-----a~~a-~s~~eaa~~aDvVitmv~--- 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH--EVTVYNRTPEKAAE---LLAAAG-----ATVA-ASPAEAAAEADVVITMLP--- 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC--EEEEEeCChhhhhH---HHHHcC-----Cccc-CCHHHHHHhCCEEEEecC---
Confidence 589999999999999999999996 99999999987421 232211 1222 222478999999999964
Q ss_pred CccccHHHHHHhhHHHHHHHHh---hhh-ccCCCeEEEEEcC
Q 018760 118 IAGESRLNLLQRNLSLFKAIIP---PLV-KYSPDCILLIVAN 155 (350)
Q Consensus 118 ~~g~~r~~~~~~n~~i~~~i~~---~i~-~~~p~a~viv~tN 155 (350)
|-+.++++.. -+. ...|..++|..|+
T Consensus 67 ------------~~~~V~~V~~g~~g~~~~~~~G~i~IDmST 96 (286)
T COG2084 67 ------------DDAAVRAVLFGENGLLEGLKPGAIVIDMST 96 (286)
T ss_pred ------------CHHHHHHHHhCccchhhcCCCCCEEEECCC
Confidence 3344444442 222 2356676666653
No 110
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.76 E-value=0.00022 Score=66.87 Aligned_cols=67 Identities=16% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
.|||+|||+|+||.+++..|+..+. ..+|+++|++.+ +++ .+.... ..+ .+.+. +.+++||+||++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----~l~~~~----g~~--~~~~~~e~~~~aDvVila 72 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----ELHQKY----GVK--GTHNKKELLTDANILFLA 72 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----HHHHhc----Cce--EeCCHHHHHhcCCEEEEE
Confidence 4799999999999999999998872 258899998653 333 233221 122 23344 567899999999
Q ss_pred c
Q 018760 113 A 113 (350)
Q Consensus 113 ~ 113 (350)
.
T Consensus 73 v 73 (279)
T PRK07679 73 M 73 (279)
T ss_pred e
Confidence 6
No 111
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.75 E-value=0.00013 Score=73.35 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=64.9
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc---CCCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT---AGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al---~~aDiVIi~~ 113 (350)
.+|+|||+|.||.++|..|+.+|. +|.++|+++++.+.......+. ...+..+.+.+ .+ +++|+|++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~l~~~~~~~-----g~~i~~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF--KISVYNRTYEKTEEFVKKAKEG-----NTRVKGYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhhhhc-----CCcceecCCHHHHHhcCCCCCEEEEEe
Confidence 589999999999999999999996 8999999998776432211110 11233445553 33 3689999885
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV 157 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~ 157 (350)
. + ...++++.+.+..+ .|+.++|..+|-.
T Consensus 75 ~----~-----------~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 75 K----A-----------GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred C----C-----------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 2 1 12333344444443 5788888888743
No 112
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.72 E-value=0.00037 Score=69.58 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=48.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+||| +|.||..++..|...+. +|.++|++++++.. +.... . +..+++. +++.+||+||+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~----~a~~~----g--v~~~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKE----VAKEL----G--VEYANDNIDAAKDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHH----HHHHc----C--CeeccCHHHHhccCCEEEEecC
Confidence 6899998 59999999999999885 89999998765432 22111 1 2234454 56899999999963
No 113
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.71 E-value=0.00016 Score=68.10 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=48.0
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
||+|||+|.||..++..|+..+. +|+++|+++++++. +.... . .. .++. +++++||+||++..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~----~~~~g-----~-~~-~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY--QLHVTTIGPEVADE----LLAAG-----A-VT-AETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHCC-----C-cc-cCCHHHHHhcCCEEEEecC
Confidence 69999999999999999999885 89999999876653 22211 1 11 2244 67899999999963
No 114
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.70 E-value=9.9e-05 Score=62.36 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=69.8
Q ss_pred EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CCC--ceEE--E-cCCc-cccCCCCEEEE
Q 018760 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LPR--TKIL--A-SVDY-AVTAGSDLCIV 111 (350)
Q Consensus 40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~~--~~v~--~-t~~~-~al~~aDiVIi 111 (350)
|+|+|+|.+|..+|..|.+.+. +|.|+++.+ +++. +.... .. ... ..+. . ..+. +....+|+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence 7899999999999999999885 999999987 5553 33211 11 011 1111 1 1122 35789999999
Q ss_pred ecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760 112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177 (350)
Q Consensus 112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG 177 (350)
|.... + . .+..+.++.+ .|+..++.+.|-++..-.+.. + +++.+|++
T Consensus 74 ~vKa~----~--------~----~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~-~--~~~~~v~~ 121 (151)
T PF02558_consen 74 AVKAY----Q--------L----EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE-Y--FPRPRVLG 121 (151)
T ss_dssp -SSGG----G--------H----HHHHHHHCTGEETTEEEEEESSSSSHHHHHHC-H--STGSGEEE
T ss_pred Eeccc----c--------h----HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH-H--cCCCcEEE
Confidence 96321 1 1 2344445555 577789999999887744443 2 34456653
No 115
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00022 Score=66.84 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||...|. ....+ ...+..+++|+|||..+.++++.|++.+. .+|++++++.+|++..+..+.+... .
T Consensus 106 TD~~G~~~~L~----~~~~~-~~~~~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~---~ 176 (283)
T COG0169 106 TDGIGFLRALK----EFGLP-VDVTGKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA---A 176 (283)
T ss_pred CCHHHHHHHHH----hcCCC-cccCCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc---c
Confidence 47888777776 43321 12245689999999999999999999996 6899999999988865555543321 1
Q ss_pred ceEEEcCCccccCCCCEEEEecCCC
Q 018760 92 TKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 92 ~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
.......+.+...++|+||.+....
T Consensus 177 ~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 177 VEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccccccccccccccCEEEECCCCC
Confidence 1122122333344799999986443
No 116
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.67 E-value=0.00048 Score=64.57 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
++||+|||+|.||.+++..|...+.. .+|++++++.+ +++ .+.... . .+..+++. +.++++|+||++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----~l~~~~---~--~~~~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----QLYDKY---P--TVELADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----HHHHHc---C--CeEEeCCHHHHHhhCCEEEEe
Confidence 36899999999999999999988732 58999998653 222 222211 1 12223454 568899999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI 159 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~ 159 (350)
+. | ..++++++.+..+ .++..+|.+.|-+++
T Consensus 72 vp----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 72 VP----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred cC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 63 1 2234444555443 345567777776655
No 117
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.66 E-value=0.00033 Score=66.30 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=49.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
+||+|||+|.||.+++..|+..+. +|+++|+++++++. +.... +..+.+. +++++||+||++..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~--~V~v~d~~~~~~~~----~~~~g-------~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH--QLQVFDVNPQAVDA----LVDKG-------ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHcC-------CcccCCHHHHHhcCCEEEEecC
Confidence 489999999999999999999985 89999999887653 32211 1123344 57899999999963
No 118
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.66 E-value=0.00012 Score=68.85 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC
Q 018760 11 GPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~ 90 (350)
--||.||.+++. .... ..+..++.|+|||.+++++++.|+..+. .+|.++|++.++++..+.++.... .
T Consensus 108 NTD~~Gf~~~L~----~~~~---~~~~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~---~ 176 (283)
T PRK14027 108 NTDVSGFGRGME----EGLP---NAKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAV---G 176 (283)
T ss_pred cCCHHHHHHHHH----hcCc---CcCCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhcc---C
Confidence 358888888885 2221 2234689999999999999999998886 689999999998887665554221 1
Q ss_pred CceEEEcC--Cc-cccCCCCEEEEecCC
Q 018760 91 RTKILASV--DY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 91 ~~~v~~t~--~~-~al~~aDiVIi~~g~ 115 (350)
...+.... +. +.+.++|+||.+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 177 REAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 11111111 11 245689999998543
No 119
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.65 E-value=0.00068 Score=61.68 Aligned_cols=130 Identities=22% Similarity=0.350 Sum_probs=76.9
Q ss_pred hhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCC--eEEEEeCC----ccchH---HHHHHHHHHhhcC
Q 018760 19 QTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVE--ELALVDAK----ADKLR---GEMLDLQHAAAFL 89 (350)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~--ev~L~D~~----~~~l~---~~~~dl~~~~~~~ 89 (350)
.||...++.... ..+..||.|+|||.+|..++..|...|+ . +|+++|++ .++.+ .....+.+...
T Consensus 10 AG~~~al~~~g~---~l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~-- 83 (226)
T cd05311 10 AGLLNALKLVGK---KIEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN-- 83 (226)
T ss_pred HHHHHHHHHhCC---CccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhc--
Confidence 456655555433 3345699999999999999999998886 4 89999998 45432 11222322210
Q ss_pred CCceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHH
Q 018760 90 PRTKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKL 167 (350)
Q Consensus 90 ~~~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~ 167 (350)
.... ..+. ++++++|+||.+.+ +|.- + .+..+.| +++.+++.++||... +.+.+.+.
T Consensus 84 -~~~~--~~~l~~~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e~~~~~A~~~ 142 (226)
T cd05311 84 -PEKT--GGTLKEALKGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPEIWPEEAKEA 142 (226)
T ss_pred -cCcc--cCCHHHHHhcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCcCCHHHHHHc
Confidence 0111 1244 67889999999865 2321 1 1222222 366777788899753 22333332
Q ss_pred hCCCCCcEeeec
Q 018760 168 SGLPSNRVIGSG 179 (350)
Q Consensus 168 sg~~~~rviG~g 179 (350)
| .+++..|
T Consensus 143 -g---a~i~a~G 150 (226)
T cd05311 143 -G---ADIVATG 150 (226)
T ss_pred -C---CcEEEeC
Confidence 2 2466665
No 120
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.63 E-value=0.00031 Score=65.21 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=45.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
.|||+|||+|.||.+++..|.+.+.. .+++.+|++++++. . ....++.+.++++|+||++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~---------------~-~~~~~~~~~~~~~D~Vilav 65 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP---------------F-VYLQSNEELAKTCDIIVLAV 65 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC---------------e-EEeCChHHHHHhCCEEEEEe
Confidence 47999999999999999999988743 35999998765420 1 12222235678999999995
No 121
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.63 E-value=0.00039 Score=65.65 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=48.4
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+|||+|.||..++..|+..+. +|.++|+++++++. +... . +..+.+. +.+++||+||++..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~----~~~~-----g--~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVYDRNPEAVAE----VIAA-----G--AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHC-----C--CeecCCHHHHHhcCCEEEEeCC
Confidence 689999999999999999999885 89999999876542 2211 1 1223355 56789999999963
No 122
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.62 E-value=0.0001 Score=60.88 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~ 112 (350)
....+||+|||+|.||.+++..|...+. +|.-+ .++.+..+ .+.... +...+. +..+.+.+||++|++
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~--~v~~v~srs~~sa~----~a~~~~---~~~~~~--~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGH--EVVGVYSRSPASAE----RAAAFI---GAGAIL--DLEEILRDADLVFIA 75 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTS--EEEEESSCHH-HHH----HHHC-----TT-------TTGGGCC-SEEEE-
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCccccc----cccccc---cccccc--ccccccccCCEEEEE
Confidence 3456899999999999999999999985 55544 44443222 233221 122222 223668999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc---CCCeEEEEEc--CCcchHHHHH
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY---SPDCILLIVA--NPVDILTYVA 164 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~---~p~a~viv~t--NP~~~~~~~~ 164 (350)
+. + ..+.+++++|.++ .|+.+|+=.| -+++++..+-
T Consensus 76 vp-----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 76 VP-----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp S------C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHH
T ss_pred ec-----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHH
Confidence 63 1 1345566666665 3565555554 5677776654
No 123
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.61 E-value=7.1e-05 Score=69.87 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=57.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aD 107 (350)
++|||-||||.||.+....++.+-.--+|+++|++..|..+.-.| |.+....+...++..++|. .+++.||
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 479999999999988766655543323899999998877543211 1111111234567778887 5899999
Q ss_pred EEEEecCCCcC
Q 018760 108 LCIVTAGARQI 118 (350)
Q Consensus 108 iVIi~~g~~~~ 118 (350)
+|++.+..|.+
T Consensus 81 lvfisvntptk 91 (481)
T KOG2666|consen 81 LVFISVNTPTK 91 (481)
T ss_pred eEEEEecCCcc
Confidence 99999888765
No 124
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.60 E-value=0.00023 Score=66.98 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred CCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC
Q 018760 11 GPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~ 90 (350)
--||.||..+|. +... ....+..++.|||||.+++++++.|+..|. .+|.+++++.++++..+..+....
T Consensus 104 NTD~~G~~~~l~----~~~~-~~~~~~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~---- 173 (282)
T TIGR01809 104 NTDWDGIAGALA----NIGK-FEPLAGFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG---- 173 (282)
T ss_pred cCCHHHHHHHHH----hhCC-ccccCCceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC----
Confidence 358888888886 2220 001234589999999999999999999885 689999999988876655543211
Q ss_pred CceEEEc-CCc-cccCCCCEEEEecCC
Q 018760 91 RTKILAS-VDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 91 ~~~v~~t-~~~-~al~~aDiVIi~~g~ 115 (350)
....... .+. +.+.++|+||.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 174 VITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cceeccchhhhhhcccCCCEEEECCCC
Confidence 1111101 122 446889999998644
No 125
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0011 Score=62.29 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=56.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--ccccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--YAVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~~al~~aDiVIi~~g 114 (350)
.++|+|+|.|.||..++..|...|. .+.+++.+..... +............ +.+ .++.++||+||+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~--~v~i~g~d~~~~~-----~~~a~~lgv~d~~--~~~~~~~~~~~aD~VivavP 73 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGL--VVRIIGRDRSAAT-----LKAALELGVIDEL--TVAGLAEAAAEADLVIVAVP 73 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCC--eEEEEeecCcHHH-----HHHHhhcCccccc--ccchhhhhcccCCEEEEecc
Confidence 5799999999999999999999997 5556666554322 1111101001111 122 467889999999974
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.. ...++++++++ ...|++++.-++
T Consensus 74 i~------------~~~~~l~~l~~---~l~~g~iv~Dv~ 98 (279)
T COG0287 74 IE------------ATEEVLKELAP---HLKKGAIVTDVG 98 (279)
T ss_pred HH------------HHHHHHHHhcc---cCCCCCEEEecc
Confidence 22 23444444444 234566555444
No 126
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.59 E-value=0.00075 Score=65.69 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=47.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
+||+|||+|.||.+++..|...++ ++.++|.+++.... ........... .+++. +++++||+||+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~--~v~i~~~~~~~~~~-----~~a~~~~~~~~--~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP--DVFIIGYDPSAAQL-----ARALGFGVIDE--LAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC--CeEEEEeCCCHHHH-----HHHhcCCCCcc--cccCHHHHhcCCCEEEEeCC
Confidence 479999999999999999999986 88899998765431 11111110111 12344 56899999999963
No 127
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.58 E-value=0.00046 Score=65.40 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=58.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCC---CCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAG---SDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~---aDiVIi~~ 113 (350)
|||+|||+|.||.+++..|+..+. +|+++|+++++++. +.+. . +..+.+.+ .+++ +|+||++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~----~~~~-----g--~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH--EVVGYDVNQEAVDV----AGKL-----G--ITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHH----HHHC-----C--CeecCCHHHHHHhCCCCCEEEEEe
Confidence 589999999999999999999885 89999999876653 3221 1 12233443 3443 69999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcC
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVAN 155 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tN 155 (350)
..+ +.++++...+.. ..++.++|..|+
T Consensus 68 p~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 68 PAG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred cCc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 321 122233333333 256778888854
No 128
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.57 E-value=0.00045 Score=63.93 Aligned_cols=68 Identities=29% Similarity=0.401 Sum_probs=48.4
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+|||+|.||.+++..|...+. ...+.++|+++++++. +.... ...++ +.+. +.+++||+||++..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~----l~~~~---~~~~~--~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAAR----LAERF---PKVRI--AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHH----HHHHc---CCceE--eCCHHHHHHhCCEEEEEeC
Confidence 589999999999999999998874 3467889988776542 33221 11222 3354 45789999999963
No 129
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.57 E-value=0.00044 Score=65.23 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc---chHHHHHHHHHHhhc
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD---KLRGEMLDLQHAAAF 88 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~---~l~~~~~dl~~~~~~ 88 (350)
-||.||..++. .... ..+..+++|+|||..+++++..|+..+. .+|.+++++++ +++..+.++....
T Consensus 106 TD~~Gf~~~l~----~~~~---~~~~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~-- 175 (288)
T PRK12749 106 TDGTGHIRAIK----ESGF---DIKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT-- 175 (288)
T ss_pred cCHHHHHHHHH----hcCC---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhcc--
Confidence 57888777775 3332 2334589999999999999999988876 69999999864 5554444443211
Q ss_pred CCCceEEEcCC---c-cccCCCCEEEEecCC
Q 018760 89 LPRTKILASVD---Y-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 89 ~~~~~v~~t~~---~-~al~~aDiVIi~~g~ 115 (350)
.....+....+ . +++.++|+||.+...
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~aDivINaTp~ 206 (288)
T PRK12749 176 DCVVTVTDLADQQAFAEALASADILTNGTKV 206 (288)
T ss_pred CceEEEechhhhhhhhhhcccCCEEEECCCC
Confidence 01112211111 1 256789999998543
No 130
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.56 E-value=0.00036 Score=65.49 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=63.9
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||...+.+. ... ..+..++.|+|+|.+|.+++..|...+. .+|++++++.++++..+..+.... .
T Consensus 104 TD~~G~~~~l~~~---~~~---~~~~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~~----~ 172 (278)
T PRK00258 104 TDGIGFVRALEER---LGV---DLKGKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGALG----K 172 (278)
T ss_pred ccHHHHHHHHHhc---cCC---CCCCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc----c
Confidence 5788888777521 111 2334589999999999999999998885 589999999988776554443211 1
Q ss_pred ceEEEcCCc-cccCCCCEEEEecCCCc
Q 018760 92 TKILASVDY-AVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 92 ~~v~~t~~~-~al~~aDiVIi~~g~~~ 117 (350)
..+ ..+. +.+.++|+||.+.....
T Consensus 173 ~~~--~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 173 AEL--DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred eee--cccchhccccCCEEEECCcCCC
Confidence 122 1122 56789999999965443
No 131
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.55 E-value=0.00057 Score=65.77 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...++|+|||+|.+|+.+|..|...|. +|+.+|++++... . . +..+.+. +.+++||+|+++.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~----~---~--------~~~~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDL----D---F--------LTYKDSVKEAIKDADIISLHV 206 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhh----h---h--------hhccCCHHHHHhcCCEEEEeC
Confidence 355799999999999999999988775 9999999864321 0 0 1112355 5789999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
.... + +..++. .+.+....|++++|+++--.-+-...+.+. +...++-|.
T Consensus 207 P~t~---~--------t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~aL~~a--L~~g~i~ga 256 (330)
T PRK12480 207 PANK---E--------SYHLFD--KAMFDHVKKGAILVNAARGAVINTPDLIAA--VNDGTLLGA 256 (330)
T ss_pred CCcH---H--------HHHHHh--HHHHhcCCCCcEEEEcCCccccCHHHHHHH--HHcCCeeEE
Confidence 4221 1 111111 122333357899999986544444444433 334566555
No 132
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.54 E-value=0.00081 Score=60.04 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 45689999999999999999999997 689999998
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.52 E-value=0.00058 Score=65.15 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...+||+|||+|.||..++..|...+. .+|+++|+++++++..+..+. ..+....+. +.+.++|+||.+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g--------~~~~~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG--------GNAVPLDELLELLNEADVVISAT 246 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC--------CeEEeHHHHHHHHhcCCEEEECC
Confidence 356799999999999999988887553 589999999887654332221 122222233 5688999999998
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTY 162 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~ 162 (350)
+.+.. ..++.+. +... .+..+++-+++|-|+-..
T Consensus 247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCchh
Confidence 75531 0111111 1111 245688999999986533
No 134
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.52 E-value=0.00045 Score=64.53 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=61.3
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||.+.+. .... ..+.+++.|+|+|.+|.+++..|+..+. +|.++|+++++++..+..+.... .
T Consensus 99 TD~~G~~~~l~----~~~~---~~~~k~vliiGaGg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~~----~ 165 (270)
T TIGR00507 99 TDGIGLVSDLE----RLIP---LRPNQRVLIIGAGGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRYG----E 165 (270)
T ss_pred CCHHHHHHHHH----hcCC---CccCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhcC----c
Confidence 47888888765 2122 2334689999999999999999998874 89999999887765554443211 1
Q ss_pred ceEEEcCCccccCCCCEEEEecCCC
Q 018760 92 TKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 92 ~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
.... +.+...+.++|+||.+.+..
T Consensus 166 ~~~~-~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 166 IQAF-SMDELPLHRVDLIINATSAG 189 (270)
T ss_pred eEEe-chhhhcccCccEEEECCCCC
Confidence 1111 11222356899999997653
No 135
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.49 E-value=0.00071 Score=62.74 Aligned_cols=115 Identities=17% Similarity=0.314 Sum_probs=75.9
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-----CCccc------
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-----VDYAV------ 102 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-----~~~~a------ 102 (350)
.+++.+.|.|| +.+|..+|..|+.+|. +|+|+.+++++|+..+.++++... ..+.+... .+.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~--v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG--VEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC--ceEEEEECcCCChhHHHHHHHHHH
Confidence 44568999999 9999999999999996 999999999999999999987652 12233321 11111
Q ss_pred --cCCCCEEEEecCCCcCc------cccHHHHHHhhHHHH----HHHHhhhhccCCCeEEEEEc
Q 018760 103 --TAGSDLCIVTAGARQIA------GESRLNLLQRNLSLF----KAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 103 --l~~aDiVIi~~g~~~~~------g~~r~~~~~~n~~i~----~~i~~~i~~~~p~a~viv~t 154 (350)
....|++|+.+|+.... -.+-.+++.-|+.-. +.+.+.|.+-. .+-||+++
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~ 142 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG 142 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 12589999999875421 112344555565444 44455555533 34566664
No 136
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.49 E-value=0.0021 Score=64.27 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEE
Q 018760 33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLC 109 (350)
Q Consensus 33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiV 109 (350)
...+.|||.|+|| |.+|+.++..|+..|. +|+.+|+....... .+.+... .....+.. .|. ..+.++|+|
T Consensus 116 ~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~---~~~~~~~-~~~~~~~~-~Di~~~~~~~~D~V 188 (436)
T PLN02166 116 IGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKE---NLVHLFG-NPRFELIR-HDVVEPILLEVDQI 188 (436)
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHh---Hhhhhcc-CCceEEEE-CccccccccCCCEE
Confidence 4556799999998 9999999999999985 99999985321111 1111110 01223332 232 357899999
Q ss_pred EEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|-+++... ....+..+.+..|+.-...+++.+.+.+. .+|.+|
T Consensus 189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 99986422 11234456677899988999988888653 455554
No 137
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.47 E-value=0.00072 Score=64.12 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC---CCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA---GSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~---~aDiVIi~~ 113 (350)
|||+|||+|.||.+++..|+..+. +|.++|+++++++. +.+. ...+ +.+.+ .++ ++|+||++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~----~~~~-----g~~~--~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH--EVVGYDRNPEAVEA----LAEE-----GATG--ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHC-----CCee--cCCHHHHHhhcCCCCEEEEEe
Confidence 589999999999999999999885 89999999877653 3221 1222 23442 233 479999985
No 138
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.42 E-value=0.0022 Score=60.76 Aligned_cols=132 Identities=19% Similarity=0.395 Sum_probs=79.4
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcC----CC-CeEEEEeCCccchHHHHHHHHHHh-------hcC----CCceEEE
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQD----FV-EELALVDAKADKLRGEMLDLQHAA-------AFL----PRTKILA 96 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~----~~-~ev~L~D~~~~~l~~~~~dl~~~~-------~~~----~~~~v~~ 96 (350)
....+.||+|||+|+=|+++|..+.+.- .+ .+|...=.. +++.+....|.+.. -|. ...++.+
T Consensus 17 ~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~e-e~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFE-EEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEec-cccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 3445689999999999999998776642 11 233333222 22222111222221 122 2345888
Q ss_pred cCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC--------C-cchHHHHHH
Q 018760 97 SVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN--------P-VDILTYVAW 165 (350)
Q Consensus 97 t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--------P-~~~~~~~~~ 165 (350)
.+|. ++++|||++|..... ..+.+++++|..+ .|++..|..+- | +.+++.++.
T Consensus 96 v~dl~ea~~dADilvf~vPh----------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPH----------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred cchHHHHhccCCEEEEeCCh----------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 8887 789999999999632 3345566666665 56655555432 2 456788888
Q ss_pred HHhCCCCCcEeeecCCcc
Q 018760 166 KLSGLPSNRVIGSGTNLD 183 (350)
Q Consensus 166 ~~sg~~~~rviG~g~~ld 183 (350)
+..|+|.. ++ +|+++.
T Consensus 160 ~~lgI~~~-vL-~GaNiA 175 (372)
T KOG2711|consen 160 RALGIPCS-VL-MGANIA 175 (372)
T ss_pred HHhCCCce-ee-cCCchH
Confidence 88888755 33 556654
No 139
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.36 E-value=0.00073 Score=68.24 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc----ccCCCCEEEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA----VTAGSDLCIV 111 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~----al~~aDiVIi 111 (350)
..++|++||.|.||.++|..|+..|. +|+.+|+++++.+..+....... ...+....+.+ .++.+|+||+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~l~~~~~~~G----a~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----NLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC--eEEEECCCHHHHHHHHHhhhhcC----CcccccCCCHHHHHhcCCCCCEEEE
Confidence 34589999999999999999999996 99999999988764322111100 01122233442 3445999999
Q ss_pred ecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCC
Q 018760 112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANP 156 (350)
Q Consensus 112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP 156 (350)
+...+ +.++++...+.. ..|+.++|..||-
T Consensus 79 ~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 79 LVKAG---------------APVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred ECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 96322 223333333333 3577888888764
No 140
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.34 E-value=0.00096 Score=64.17 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
..++|+|||+|..|...+..+....-+.+|.++++++++++..+.++++.. ..++....+. +++.+||+||.+..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~----g~~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL----GIPVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc----CceEEEeCCHHHHHccCCEEEEeeC
Confidence 346899999999999988877753335799999999998887666665432 2345445565 67899999999854
No 141
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00018 Score=65.37 Aligned_cols=68 Identities=22% Similarity=0.461 Sum_probs=49.5
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-E-cCC---c-cc-cCCCCEEE
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-A-SVD---Y-AV-TAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~-t~~---~-~a-l~~aDiVI 110 (350)
|+|+|+|+|.+|+++|..|.+.|. +|+++|.++++++.. +++.. ...+. . .++ + ++ +.++|.+|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~---~~~~~----~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEF---LADEL----DTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH---hhhhc----ceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 689999999999999999999985 999999999877632 22111 11222 1 223 2 34 88999999
Q ss_pred EecC
Q 018760 111 VTAG 114 (350)
Q Consensus 111 i~~g 114 (350)
.+.+
T Consensus 72 a~t~ 75 (225)
T COG0569 72 AATG 75 (225)
T ss_pred EeeC
Confidence 9865
No 142
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.32 E-value=0.0011 Score=57.92 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
||+|||+|.+|+.++..|+..|+ .+++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999997 6899999875
No 143
>PLN02712 arogenate dehydrogenase
Probab=97.31 E-value=0.0022 Score=67.27 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=46.6
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c-CCCCEEE
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T-AGSDLCI 110 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l-~~aDiVI 110 (350)
...+++||+|||+|.||..++..|...|. +|+.+|++..+. ...+ . ... ..++.++ + ++||+||
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~-----~A~~-~----Gv~--~~~d~~e~~~~~aDvVi 113 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGH--TVLAHSRSDHSL-----AARS-L----GVS--FFLDPHDLCERHPDVIL 113 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-----HHHH-c----CCE--EeCCHHHHhhcCCCEEE
Confidence 34456899999999999999999998884 899999975321 1111 1 112 2335533 3 5799999
Q ss_pred Eec
Q 018760 111 VTA 113 (350)
Q Consensus 111 i~~ 113 (350)
++.
T Consensus 114 Lav 116 (667)
T PLN02712 114 LCT 116 (667)
T ss_pred EcC
Confidence 996
No 144
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.31 E-value=0.00086 Score=63.29 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc---cchHHHHHHHHHHhhc
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA---DKLRGEMLDLQHAAAF 88 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~---~~l~~~~~dl~~~~~~ 88 (350)
-||.||...+. ..+. ..+..++.|+|||.+|.+++..|+..|. .+|+++++++ ++++..+.++....
T Consensus 108 TD~~G~~~~l~----~~~~---~~~~k~vlI~GAGGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~-- 177 (289)
T PRK12548 108 TDGLGFVRNLR----EHGV---DVKGKKLTVIGAGGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEV-- 177 (289)
T ss_pred cCHHHHHHHHH----hcCC---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcC--
Confidence 37777777665 3332 2234579999999999999999999885 5799999987 56665554453321
Q ss_pred CCCceEEEc--CC---c-cccCCCCEEEEecCC
Q 018760 89 LPRTKILAS--VD---Y-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 89 ~~~~~v~~t--~~---~-~al~~aDiVIi~~g~ 115 (350)
....+... ++ . +.++.+|+||.+...
T Consensus 178 -~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~ 209 (289)
T PRK12548 178 -PECIVNVYDLNDTEKLKAEIASSDILVNATLV 209 (289)
T ss_pred -CCceeEEechhhhhHHHhhhccCCEEEEeCCC
Confidence 11112111 11 1 245678999998543
No 145
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.30 E-value=0.0012 Score=54.85 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=50.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t 97 (350)
..||+|+|+|.+|+.++..|+..|+ .++.|+|-+. .|++.....++... |..++...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n---p~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN---PDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS---TTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc---Cceeeeee
Confidence 4699999999999999999999997 6999999642 23333333344332 34555543
Q ss_pred CC------c-cccCCCCEEEEec
Q 018760 98 VD------Y-AVTAGSDLCIVTA 113 (350)
Q Consensus 98 ~~------~-~al~~aDiVIi~~ 113 (350)
.. . +.++++|+||.+.
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEES
T ss_pred ecccccccccccccCCCEEEEec
Confidence 22 1 3467999999985
No 146
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.0011 Score=63.62 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+|+|||+|.+|...+..++...-+.+|.++|+++++++.....+.+.. ..++....+. +++.+||+||.+.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF----NTEIYVVNSADEAIEEADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEccC
Confidence 346899999999998888776644335899999999998887666665432 2234444565 57899999999864
No 147
>PLN02256 arogenate dehydrogenase
Probab=97.30 E-value=0.003 Score=60.11 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=46.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc-CCCCEEEE
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT-AGSDLCIV 111 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al-~~aDiVIi 111 (350)
+.+.+||+|||+|.||..++..|...+. +|+.+|.++. . +..... .... .++.+ .+ .++|+||+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~--~V~~~d~~~~--~----~~a~~~----gv~~--~~~~~e~~~~~aDvVil 98 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH--TVLATSRSDY--S----DIAAEL----GVSF--FRDPDDFCEEHPDVVLL 98 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECccH--H----HHHHHc----CCee--eCCHHHHhhCCCCEEEE
Confidence 3456899999999999999999988874 8999998853 1 111111 1122 33443 33 47999999
Q ss_pred ecC
Q 018760 112 TAG 114 (350)
Q Consensus 112 ~~g 114 (350)
++.
T Consensus 99 avp 101 (304)
T PLN02256 99 CTS 101 (304)
T ss_pred ecC
Confidence 963
No 148
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.24 E-value=0.0028 Score=56.83 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=67.6
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEecCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~g~ 115 (350)
|||.+||+|.+|..+...+-.... +.-+.+||.+.+++.. +..... .+. .++.++ +.+.|++|.+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~----~~~~~~----~~~--~s~ide~~~~~DlvVEaAS- 69 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKE----LEASVG----RRC--VSDIDELIAEVDLVVEAAS- 69 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHH----HHhhcC----CCc--cccHHHHhhccceeeeeCC-
Confidence 689999999999998877776532 4678889999987763 332211 111 145544 599999999974
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
.+.+++++.++-+.+.|-+|+.++-=+
T Consensus 70 ---------------~~Av~e~~~~~L~~g~d~iV~SVGALa 96 (255)
T COG1712 70 ---------------PEAVREYVPKILKAGIDVIVMSVGALA 96 (255)
T ss_pred ---------------HHHHHHHhHHHHhcCCCEEEEechhcc
Confidence 467889999999888887766665433
No 149
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.23 E-value=0.0016 Score=58.72 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|||+|.+|+.++..|+..|+ .+++|+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 35689999999999999999999997 689999987
No 150
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.23 E-value=0.0014 Score=62.93 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=55.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+++|||+|.+|...+..+.....+.+|.++|+++++++..+.++.+ + ..++....+. +++++||+|+.+..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~---~--g~~v~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD---Y--EVPVRAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh---h--CCcEEEeCCHHHHhccCCEEEEecC
Confidence 4568999999999998777666554568999999999988866666653 1 2234445565 67999999999853
No 151
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.22 E-value=0.0049 Score=61.73 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEE
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIV 111 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi 111 (350)
.+.|||.|+|+ |.+|++++..|++.+. +|+.+|........ .+.+... ....++.. .|. ..+.++|+||-
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~---~~~~~~~-~~~~~~i~-~D~~~~~l~~~D~ViH 189 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKE---NVMHHFS-NPNFELIR-HDVVEPILLEVDQIYH 189 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchh---hhhhhcc-CCceEEEE-CCccChhhcCCCEEEE
Confidence 35689999998 9999999999999985 89999875332211 1111110 11233332 232 35678999999
Q ss_pred ecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 112 TAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 112 ~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+++... .......+.+..|+.....+.+.+++... .+|.+|
T Consensus 190 lAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S 232 (442)
T PLN02206 190 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 232 (442)
T ss_pred eeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 986432 11123456677888888888888877642 455554
No 152
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.21 E-value=0.0019 Score=57.75 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILA 96 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~ 96 (350)
+..||.|+|+|.+|+.++..|+..|+ .+|+|+|.+. .|++..+..+.... +..++..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~i~~ 95 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQVTA 95 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCEEEE
Confidence 35689999999999999999999996 6999999872 23333333343322 3444442
Q ss_pred cCC------c-cccCCCCEEEEecC
Q 018760 97 SVD------Y-AVTAGSDLCIVTAG 114 (350)
Q Consensus 97 t~~------~-~al~~aDiVIi~~g 114 (350)
... . +.++++|+||.+..
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d 120 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD 120 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC
Confidence 211 1 24789999998853
No 153
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.21 E-value=0.0016 Score=61.66 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=46.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+|||.|.||.+++..|+..+. +|.++|+++. .+ .+... .... ..+. +..++||+||++..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~--~v~v~~~~~~-~~----~~~~~-----g~~~--~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH--QLHVTTIGPV-AD----ELLSL-----GAVS--VETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC--eEEEEeCCHh-HH----HHHHc-----CCee--cCCHHHHHhcCCEEEEeCC
Confidence 589999999999999999999995 8999999763 22 23221 1122 2233 56789999999963
No 154
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.21 E-value=0.0018 Score=62.24 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+++|||+|.++...+..|+...-+.+|.++++++++++..+.++.+.. ..++....+. +++.+||+||.+..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~----g~~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL----GIDVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhccCCEEEEecC
Confidence 346899999999999998888743335799999999999887766665422 2345444565 57899999999854
No 155
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.21 E-value=0.0031 Score=61.71 Aligned_cols=53 Identities=13% Similarity=0.314 Sum_probs=42.6
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 36 RHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
..+||+||| +|.||..++..|...|. +|.++|+++. ++. +.+++||+||+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~------------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW------------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc------------------------hhHHHHHhcCCEEEEeC
Confidence 447999999 79999999999999985 8999998531 012 4467899999996
Q ss_pred C
Q 018760 114 G 114 (350)
Q Consensus 114 g 114 (350)
.
T Consensus 151 P 151 (374)
T PRK11199 151 P 151 (374)
T ss_pred c
Confidence 3
No 156
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.20 E-value=0.001 Score=66.97 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=63.1
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEEEEecC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLCIVTAG 114 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiVIi~~g 114 (350)
+|+|||.|.||.++|..|+..|. +|+++|+++++++. +..... ....+....+. +.++.+|+|++++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~--~V~v~drt~~~~~~----l~~~~~--~g~~~~~~~s~~e~v~~l~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF--TVSVYNRTPEKTDE----FLAEHA--KGKKIVGAYSIEEFVQSLERPRKIMLMVK 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC--eEEEEeCCHHHHHH----HHhhcc--CCCCceecCCHHHHHhhcCCCCEEEEECC
Confidence 48999999999999999999996 89999999987763 332100 00012222333 24567999999863
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC--Ccch
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN--PVDI 159 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--P~~~ 159 (350)
. + +.+.++...+..+ .++.++|..|| |.+.
T Consensus 73 ~----~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t 105 (467)
T TIGR00873 73 A----G-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDT 105 (467)
T ss_pred C----c-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence 2 1 2223333444443 57788888887 4444
No 157
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.17 E-value=0.0037 Score=66.57 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=49.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
.||+|||+|.||..++..+...++..+|+.+|+++++++. ..... .....+++. ++++++|+||++..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~----a~~~g-----~~~~~~~~~~~~~~~aDvVilavp 72 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLEL----AVSLG-----VIDRGEEDLAEAVSGADVIVLAVP 72 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHH----HHHCC-----CCCcccCCHHHHhcCCCEEEECCC
Confidence 5899999999999999999988854579999999876542 11111 111123344 56889999999964
No 158
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.14 E-value=0.0021 Score=61.00 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+++|||+|..+...+..++.-..+.+|.++|+++++++..+.++.+.. ..++....+. +++++||+|+.+..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~----~~~v~~~~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF----GVDIRPVDNAEAALRDADTITSITN 191 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEecC
Confidence 346899999999999888777765556899999999999987777776532 2345555565 67999999998754
No 159
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.14 E-value=0.0045 Score=59.12 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
.+.++|+|||.|++|+.+|..|..-|. +|..+|...+...+ +. ......+. +.+++||+|+++.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~--~V~~~~~~~~~~~~----~~---------~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF--PLRCWSRSRKSWPG----VQ---------SFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCCCC----ce---------eecccccHHHHHhcCCEEEECC
Confidence 345799999999999999999998786 89999986543211 00 11111244 5689999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~ 180 (350)
.... .|..++. .+.+....|++++||++--.=+-...+.+. +...++.|.+.
T Consensus 199 Plt~-----------~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde~aL~~a--L~~g~i~gaal 250 (312)
T PRK15469 199 PNTP-----------ETVGIIN--QQLLEQLPDGAYLLNLARGVHVVEDDLLAA--LDSGKVKGAML 250 (312)
T ss_pred CCCH-----------HHHHHhH--HHHHhcCCCCcEEEECCCccccCHHHHHHH--HhcCCeeeEEe
Confidence 3221 1222221 234455568899999984433333344333 33456665543
No 160
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.13 E-value=0.0023 Score=59.69 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~g 114 (350)
+|||+|||+|.+|..++..+...+ -+.-+.++|+++++++. +.... ...+ .+++++ +.++|+|+++++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~----~a~~~----~~~~--~~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAEN----LASKT----GAKA--CLSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHH----HHHhc----CCee--ECCHHHHhcCCCEEEEcCC
Confidence 379999999999999998888764 22336679998876553 22211 1222 346644 589999999963
No 161
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.13 E-value=0.0027 Score=65.01 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=69.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----hcC--CCceEEEc--CCc----cc
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----AFL--PRTKILAS--VDY----AV 102 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~~~--~~~~v~~t--~~~----~a 102 (350)
+...|.|+|| |.+|..++..|+..|. +|++++++.+++......+.... ... ....+... ++. ++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 3457899999 9999999999999885 89999999887765444443210 000 11222211 122 34
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+.++|+||.++|........-...+.-|..-...+++.+.+..-.. +|++|
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgR-IV~VS 207 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNH-FILVT 207 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCE-EEEEc
Confidence 7899999999876432211111223345555666777766654333 44444
No 162
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.12 E-value=0.0024 Score=61.27 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV 111 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi 111 (350)
...+.+||+|||.|++|.+++..|...|+ +|+..+.+.++... ..... ...+ . +. ++++.||+|++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~----~A~~~----G~~~--~-s~~eaa~~ADVVvL 79 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV--DVVVGLREGSKSWK----KAEAD----GFEV--L-TVAEAAKWADVIMI 79 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC--EEEEEECCchhhHH----HHHHC----CCee--C-CHHHHHhcCCEEEE
Confidence 34556799999999999999999999986 88888876544322 11111 1122 2 44 67899999999
Q ss_pred ec
Q 018760 112 TA 113 (350)
Q Consensus 112 ~~ 113 (350)
++
T Consensus 80 aV 81 (330)
T PRK05479 80 LL 81 (330)
T ss_pred cC
Confidence 96
No 163
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.12 E-value=0.0012 Score=66.70 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||...+. +... ..+.+++.|+|+|.+|.+++..|...|. +|+++|+++++++.....+.
T Consensus 314 TD~~G~~~~l~----~~~~---~~~~k~vlIiGaGgiG~aia~~L~~~G~--~V~i~~R~~~~~~~la~~~~-------- 376 (477)
T PRK09310 314 TDGEGLFSLLK----QKNI---PLNNQHVAIVGAGGAAKAIATTLARAGA--ELLIFNRTKAHAEALASRCQ-------- 376 (477)
T ss_pred cCHHHHHHHHH----hcCC---CcCCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc--------
Confidence 47888877775 3222 2344689999999999999999999885 89999998876654322211
Q ss_pred ceEEEcCCccccCCCCEEEEecC
Q 018760 92 TKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 92 ~~v~~t~~~~al~~aDiVIi~~g 114 (350)
.......+.+++.++|+||+|..
T Consensus 377 ~~~~~~~~~~~l~~~DiVInatP 399 (477)
T PRK09310 377 GKAFPLESLPELHRIDIIINCLP 399 (477)
T ss_pred cceechhHhcccCCCCEEEEcCC
Confidence 01111123345789999999964
No 164
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=97.11 E-value=0.0011 Score=61.79 Aligned_cols=85 Identities=24% Similarity=0.420 Sum_probs=59.9
Q ss_pred hhhccccCCCCCC----CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE
Q 018760 20 TFFKPINHAAPPS----PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95 (350)
Q Consensus 20 ~~~~~~~~~~~~~----~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~ 95 (350)
.|.+.+.++.... ......+|..||.|.||++++..|+..|+ .|+.||++.++.+ ++++.- .++.
T Consensus 14 ~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~--kVtV~dr~~~k~~----~f~~~G-----a~v~ 82 (327)
T KOG0409|consen 14 AFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGY--KVTVYDRTKDKCK----EFQEAG-----ARVA 82 (327)
T ss_pred hhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCC--EEEEEeCcHHHHH----HHHHhc-----hhhh
Confidence 3444455533322 23335799999999999999999999996 9999999887654 566543 2343
Q ss_pred EcCCccccCCCCEEEEecCCC
Q 018760 96 ASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 96 ~t~~~~al~~aDiVIi~~g~~ 116 (350)
. +..|-.++||+||.+.+.|
T Consensus 83 ~-sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 83 N-SPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred C-CHHHHHhhcCEEEEEcCCh
Confidence 1 1236689999999997654
No 165
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.10 E-value=0.0051 Score=57.38 Aligned_cols=127 Identities=20% Similarity=0.337 Sum_probs=83.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceEEEcCCc-
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKILASVDY- 100 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v~~t~~~- 100 (350)
..||+|.|||+.|..++.+|... |+- ..++++|.+- ++ +......+.+.. .. ....++
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~---~~---~~~~~L~ 98 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD---EE---KEGKSLL 98 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc---Cc---ccCCCHH
Confidence 46999999999999999877765 652 5899999853 22 222222222211 11 112355
Q ss_pred cccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCcE
Q 018760 101 AVTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNRV 175 (350)
Q Consensus 101 ~al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~rv 175 (350)
++++ ++|++|=+.+.+ |- +-+++.+.|.++|++.+|+-.|||.. +..+-+++.+. -+.+
T Consensus 99 e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~--G~ai 162 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD--GRAL 162 (279)
T ss_pred HHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc--CCEE
Confidence 6788 899988775433 21 12456778888899999999999974 55666767652 1358
Q ss_pred eeecCCccHH
Q 018760 176 IGSGTNLDSS 185 (350)
Q Consensus 176 iG~g~~ld~~ 185 (350)
|++|+-.+..
T Consensus 163 ~ATGsPf~pv 172 (279)
T cd05312 163 FASGSPFPPV 172 (279)
T ss_pred EEeCCCCCCe
Confidence 8998765543
No 166
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.10 E-value=0.003 Score=62.92 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
.+..+|+|||+|.+|..++..|...|. .+|+++|++++++...+..+. ..+....+. +.+.++|+||.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g--------~~~~~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG--------GEAIPLDELPEALAEADIVISST 250 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC--------CcEeeHHHHHHHhccCCEEEECC
Confidence 345799999999999999998887774 589999999877654332221 122212233 5688999999997
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV 163 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~ 163 (350)
+.+..- . +...++.... .+.....+++-+++|-|+-..+
T Consensus 251 ~s~~~~-i--------~~~~l~~~~~--~~~~~~~vviDla~Prdid~~v 289 (423)
T PRK00045 251 GAPHPI-I--------GKGMVERALK--ARRHRPLLLVDLAVPRDIEPEV 289 (423)
T ss_pred CCCCcE-E--------cHHHHHHHHh--hccCCCeEEEEeCCCCCCcccc
Confidence 655311 1 1122222110 1113457899999998885433
No 167
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.10 E-value=0.0023 Score=61.08 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+|+|||+|.+|...+..++...-+.+|.++++++++++..+.++.+. ...+....+. +++++||+|+.+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-----g~~~~~~~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-----GFDAEVVTDLEAAVRQADIISCATL 198 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEeCCHHHHHhcCCEEEEeeC
Confidence 45689999999999999876665322479999999999888766666532 1123334455 57899999977754
No 168
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.09 E-value=0.0076 Score=52.11 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=64.0
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEEEe
Q 018760 40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCIVT 112 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVIi~ 112 (350)
|+|+|| |.+|..++..|++++ .+|+++-+++++++. . ...++... .| . ++++++|.||.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--------~---~~~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--------S---PGVEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--------C---TTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--------c---cccccceeeehhhhhhhhhhhhcchhhhh
Confidence 789999 999999999999999 499999999987653 1 23344432 12 2 468899999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
++.+.+ .....+.+.+.+++....- ++.+|
T Consensus 68 ~~~~~~-----------~~~~~~~~~~a~~~~~~~~-~v~~s 97 (183)
T PF13460_consen 68 AGPPPK-----------DVDAAKNIIEAAKKAGVKR-VVYLS 97 (183)
T ss_dssp CHSTTT-----------HHHHHHHHHHHHHHTTSSE-EEEEE
T ss_pred hhhhcc-----------ccccccccccccccccccc-ceeee
Confidence 865543 1566677777777765443 44443
No 169
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.06 E-value=0.0025 Score=61.37 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
-..+||+|||+|.+|+.+|..|+. ++.-+|+.+|.+.... .... +....+. +.+++||+|+++.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~------~~~~--------~~~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK------AATY--------VDYKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh------HHhh--------ccccCCHHHHHHhCCEEEEeC
Confidence 356799999999999999998853 3334899999876422 1110 1123355 5689999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
.... .++ .++ |. + .+....|++++|+++--.-+-+..+.+. +...++-|.
T Consensus 209 P~t~---~t~-~li--~~----~---~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~ga 258 (332)
T PRK08605 209 PATK---YNH-YLF--NA----D---LFKHFKKGAVFVNCARGSLVDTKALLDA--LDNGLIKGA 258 (332)
T ss_pred CCCc---chh-hhc--CH----H---HHhcCCCCcEEEECCCCcccCHHHHHHH--HHhCCeeEE
Confidence 4321 111 111 11 1 2233357889999975433333333322 233466555
No 170
>PLN00203 glutamyl-tRNA reductase
Probab=97.05 E-value=0.0027 Score=64.59 Aligned_cols=109 Identities=11% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~ 115 (350)
..||+|||+|.||..++..|...|. .+|++++++.++++.....+.. ....+....+. +++.+||+||.+.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g-----~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD-----VEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC-----CceEeecHhhHHHHHhcCCEEEEccCC
Confidence 4699999999999999999988875 5899999998877643332210 11122222343 568999999998654
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL 160 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~ 160 (350)
+. |=. ..+.++.+.+.-.+....-++|-++.|-|+=
T Consensus 340 ~~-pvI--------~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 340 ET-PLF--------LKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CC-Cee--------CHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 42 111 1112222211100111224788899998774
No 171
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.04 E-value=0.0051 Score=57.82 Aligned_cols=119 Identities=16% Similarity=0.290 Sum_probs=72.5
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE---EcCC---c----cccC--CC
Q 018760 40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL---ASVD---Y----AVTA--GS 106 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~---~t~~---~----~al~--~a 106 (350)
|.|.|| |++|+.++..|+..++ .+|+++|+++.++.....++...... ...+.. .-.| . +.++ +.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCC
Confidence 679998 9999999999999986 68999999998887666666433211 112111 1112 1 3456 89
Q ss_pred CEEEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc----CCcchH
Q 018760 107 DLCIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA----NPVDIL 160 (350)
Q Consensus 107 DiVIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NP~~~~ 160 (350)
|+|+-++..-.-|- ....+.+..|+-=-+.+++...+++-+-+|.+-| ||.++|
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm 138 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM 138 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence 99999975432221 2345667778888888888888887777666654 666664
No 172
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.03 E-value=0.0029 Score=57.56 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|-+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence 35699999999999999999999996 699999864
No 173
>PLN02650 dihydroflavonol-4-reductase
Probab=97.02 E-value=0.005 Score=59.30 Aligned_cols=118 Identities=9% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGS 106 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~a 106 (350)
....++|.|+|| |.+|++++..|+..|. +|++++++.+.+.... ++...........+... ++ . +.++++
T Consensus 2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~ 78 (351)
T PLN02650 2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVK-HLLDLPGATTRLTLWKADLAVEGSFDDAIRGC 78 (351)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHH-HHHhccCCCCceEEEEecCCChhhHHHHHhCC
Confidence 345669999998 9999999999999985 8998888876554322 22111000011121111 12 2 347789
Q ss_pred CEEEEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 107 DLCIVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|+||.+++........ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus 79 d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 79 TGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred CEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 9999998643211111 23456668888888888877754223455554
No 174
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.01 E-value=0.0028 Score=60.27 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=54.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+|+|||+|.+|...+..++......+|.++|+++++++..+..+... ...+. ..+. +++.+||+||.+..
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-----~~~~~-~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-----GPTAE-PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeeE-ECCHHHHhhcCCEEEEccC
Confidence 45699999999999999988876333479999999999888766666532 12333 3344 57999999999864
No 175
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.01 E-value=0.0059 Score=57.61 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
+....+|+|+|+|.+|..++..|...|. +|+++|+++++++. ... . ........+. +.++++|+||++
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~----~~~-~----g~~~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLAR----ITE-M----GLIPFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHH-C----CCeeecHHHHHHHhccCCEEEEC
Confidence 3445799999999999999999998885 89999998765432 111 1 1111112233 468899999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchHHHHHHH
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDILTYVAWK 166 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~~~~~~~ 166 (350)
.+.. ++ + . ..+....|++++|++ ++|-.+--..+.+
T Consensus 217 ~P~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 217 IPAL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred CChH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence 6321 11 1 1 123334578888877 5887763344433
No 176
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.98 E-value=0.0043 Score=57.14 Aligned_cols=125 Identities=19% Similarity=0.351 Sum_probs=77.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCc----c--chHHHHHHHHHHhhcCCCceEEEcCCc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKA----D--KLRGEMLDLQHAAAFLPRTKILASVDY 100 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~----~--~l~~~~~dl~~~~~~~~~~~v~~t~~~ 100 (350)
+..||.++|||+.|..++.+|... |+- ++++|+|.+- + .+......+.+.. ...... .++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~---~~~~~~--~~L 98 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT---NPEKDW--GSL 98 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS---STTT----SSH
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC---cccccc--cCH
Confidence 346999999999999999888876 774 6899999853 2 2221222222211 111111 355
Q ss_pred -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCc
Q 018760 101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNR 174 (350)
Q Consensus 101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~r 174 (350)
++++++ |++|=+.+.+ |. +-+++.+.|.+++++.+|+-.|||.. +..+-+++.+. .|
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~---g~ 161 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTD---GR 161 (255)
T ss_dssp HHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTT---SE
T ss_pred HHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCC---ce
Confidence 789999 9988876543 21 22567788889999999999999976 44555666552 34
Q ss_pred -EeeecCCc
Q 018760 175 -VIGSGTNL 182 (350)
Q Consensus 175 -viG~g~~l 182 (350)
+|++|+-.
T Consensus 162 ai~AtGSpf 170 (255)
T PF03949_consen 162 AIFATGSPF 170 (255)
T ss_dssp EEEEESS--
T ss_pred EEEecCCcc
Confidence 46776543
No 177
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.96 E-value=0.0024 Score=60.19 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=45.5
Q ss_pred EEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 42 VIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 42 IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
|||+|.||.+++..|+..+. +|+++|+++++++. +... ... .+.+. +++++||+||++..
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----g~~--~~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH--PVRVFDLFPDAVEE----AVAA-----GAQ--AAASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC--eEEEEeCCHHHHHH----HHHc-----CCe--ecCCHHHHHhcCCEEEEeCC
Confidence 58999999999999999985 89999999876653 3221 112 23344 57899999999974
No 178
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.96 E-value=0.003 Score=60.94 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=51.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc---------------------cchHHHHHHHHHHhhcCCCceE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA---------------------DKLRGEMLDLQHAAAFLPRTKI 94 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~---------------------~~l~~~~~dl~~~~~~~~~~~v 94 (350)
+..||+|||+|.+|+.++..|+..|+ .+|+|+|.|. .|++.....+.... +..++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---p~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---SEVEI 98 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC---CCcEE
Confidence 34689999999999999999999996 6999999874 13333333444332 34444
Q ss_pred EEcC------Cc-cccCCCCEEEEec
Q 018760 95 LASV------DY-AVTAGSDLCIVTA 113 (350)
Q Consensus 95 ~~t~------~~-~al~~aDiVIi~~ 113 (350)
..-. +. +.++++|+||.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcC
Confidence 3321 12 3478999999985
No 179
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.96 E-value=0.0024 Score=63.49 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=67.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
+..+|+|+|+|.+|..++..|...|. .+|+++|++.++++..+..+. .......+. +.+.++|+||.+.+
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g--------~~~i~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG--------GEAVKFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC--------CeEeeHHHHHHHHhhCCEEEECCC
Confidence 44699999999999999999988774 589999999877654332221 111112233 56889999999976
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV 163 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~ 163 (350)
.+. +-. +...++.. +..-....+++-+++|-|+-..+
T Consensus 250 s~~-~ii--------~~e~l~~~---~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 250 APH-PIV--------SKEDVERA---LRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred CCC-ceE--------cHHHHHHH---HhcCCCCeEEEEeCCCCCCChhh
Confidence 543 111 11122211 11111346888999998885433
No 180
>PRK07574 formate dehydrogenase; Provisional
Probab=96.96 E-value=0.0054 Score=60.15 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
....++|+|||.|++|+.+|..|..-|. +|+.+|+.....+ ..... .+....+. +.++.||+|+++
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvV~l~ 255 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEE-----VEQEL------GLTYHVSFDSLVSVCDVVTIH 255 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchh-----hHhhc------CceecCCHHHHhhcCCEEEEc
Confidence 3456799999999999999999988776 8999998753221 11111 12222345 568999999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
..... ++ ..++ | .+.+....|.+++||++--.=+-...+.+. +...++-|.
T Consensus 256 lPlt~---~T-~~li--~-------~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A--L~sG~i~GA 306 (385)
T PRK07574 256 CPLHP---ET-EHLF--D-------ADVLSRMKRGSYLVNTARGKIVDRDAVVRA--LESGHLAGY 306 (385)
T ss_pred CCCCH---HH-HHHh--C-------HHHHhcCCCCcEEEECCCCchhhHHHHHHH--HHhCCccEE
Confidence 64221 11 1111 2 233344468899999974332323333332 233466555
No 181
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.95 E-value=0.0057 Score=58.20 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH--HHHHHHHHhhcCCCceEEEc-----CCc-cccCCC
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG--EMLDLQHAAAFLPRTKILAS-----VDY-AVTAGS 106 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~--~~~dl~~~~~~~~~~~v~~t-----~~~-~al~~a 106 (350)
..++|+|.|| |.+|+.++..|+++|+ .|+-.=++++..+. ...+|.... .+.++... ..+ +++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~---~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK---ERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc---ccceEEeccccccchHHHHHhCC
Confidence 5679999999 9999999999999997 78877777765332 233343222 12233321 123 579999
Q ss_pred CEEEEecCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760 107 DLCIVTAGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159 (350)
Q Consensus 107 DiVIi~~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~ 159 (350)
|.|+-++... ........+++.-.++-...+.+.+.+.. .-.-+++|.-...
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aA 132 (327)
T KOG1502|consen 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAA 132 (327)
T ss_pred CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHH
Confidence 9999987422 11111344667667777888888888876 4445666655433
No 182
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.94 E-value=0.0037 Score=59.75 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=70.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEE
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiV 109 (350)
.++|.|+|| |.+|++++..|+..+...+|+++|++..+......++.. ....+... +|. ++++++|+|
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA-----PCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 468999998 999999999999876334899999876543321111110 11222211 122 346789999
Q ss_pred EEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|.+++....+ ..+..+.+..|+.-...+.+.+.+.+.. .+|.+|
T Consensus 79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9998753222 2234566777888888888888876433 355554
No 183
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.94 E-value=0.0022 Score=61.21 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=50.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
..+++|||+|..+..-+..++.--.+.+|.++|+++++++..+.++++ . ...+....+. +++++||+|+.+..
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----~~~v~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----GVPVVAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----CTCEEEESSHHHHHTTSSEEEE---
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----cccceeccchhhhcccCCEEEEccC
Confidence 358999999999988887776644478999999999988877777776 2 3456666676 68999999998743
No 184
>PLN02712 arogenate dehydrogenase
Probab=96.92 E-value=0.008 Score=63.17 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC-CCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA-GSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~-~aDiVIi~~ 113 (350)
+++||+|||+|.||..++..|...|. +|+.+|++.+. + .... . ... ..++.++ +. ++|+||+++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~--~V~~~dr~~~~-~----~a~~-~----Gv~--~~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH--TVLAYSRSDYS-D----EAQK-L----GVS--YFSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC--EEEEEECChHH-H----HHHH-c----CCe--EeCCHHHHHhcCCCEEEECC
Confidence 56899999999999999999998874 89999998531 1 1111 1 112 2345543 44 589999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWK 166 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~ 166 (350)
... .+.+++.++... ...|+++++.++..-......+.+
T Consensus 434 P~~------------~~~~vi~~l~~~--~lk~g~ivvDv~SvK~~~~~~~~~ 472 (667)
T PLN02712 434 SIL------------STEKVLKSLPFQ--RLKRSTLFVDVLSVKEFPRNLFLQ 472 (667)
T ss_pred ChH------------HHHHHHHHHHHh--cCCCCcEEEECCCccHHHHHHHHH
Confidence 311 123334433210 134677777775443333344433
No 185
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.91 E-value=0.0044 Score=59.73 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
-..++|+|||.|.+|+.+|..+...|. +|..+|++..... .... ... . .+. +.+++||+|+++.
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~------~~~~----~~~--~-~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEA------EKEL----GAE--Y-RPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhh------HHHc----CCE--e-cCHHHHHhhCCEEEEeC
Confidence 456799999999999999999988886 8999999764211 1111 111 1 245 5689999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG 179 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g 179 (350)
.... + +..++. .+.+....|++++||++--.-+-...+.+. +...++-|.+
T Consensus 213 P~t~---~--------T~~~i~--~~~~~~mk~ga~lIN~aRg~~vd~~aL~~a--L~~g~i~gAa 263 (333)
T PRK13243 213 PLTK---E--------TYHMIN--EERLKLMKPTAILVNTARGKVVDTKALVKA--LKEGWIAGAG 263 (333)
T ss_pred CCCh---H--------HhhccC--HHHHhcCCCCeEEEECcCchhcCHHHHHHH--HHcCCeEEEE
Confidence 4221 1 111111 123344468899999974322223333332 2334776553
No 186
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.89 E-value=0.0054 Score=59.08 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=64.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
+.++|.|+|| |.+|+.++..|+...-..+|++++++++++.....++.. .++. +. +++.++|+||.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-------~~i~---~l~~~l~~aDiVv~~t 223 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-------GKIL---SLEEALPEADIVVWVA 223 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-------ccHH---hHHHHHccCCEEEECC
Confidence 4468999999 999999999998653246899999998877654433321 1111 33 5789999999998
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL 160 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~ 160 (350)
+.+...-.+..++ .+..+++-++.|=|+-
T Consensus 224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 7654211111110 3557777888887774
No 187
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.88 E-value=0.0081 Score=53.67 Aligned_cols=130 Identities=13% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC-CccccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV-DYAVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~-~~~al~~aDiVIi~~ 113 (350)
.+..||.|||+|.||...+..|+..+. +|++++.+.. + ...++.+.. ........ ..+.+.++|+||.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga--~V~VIs~~~~--~-~l~~l~~~~----~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA--HIVVISPELT--E-NLVKLVEEG----KIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCCC--H-HHHHHHhCC----CEEEEecCCChhhcCCceEEEEcC
Confidence 345799999999999999999999884 8999976431 1 112222211 12222111 124689999999885
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLL 191 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~l 191 (350)
+.+. -|..+... ++ + ..++-++.+|- |...+...+..+ =.|++.|.--+-++.+.+
T Consensus 79 ~d~e-----------lN~~i~~~-a~---~---~~lvn~~d~~~~~~f~~Pa~~~~g~----l~iaIsT~G~sP~la~~l 136 (202)
T PRK06718 79 NDPR-----------VNEQVKED-LP---E---NALFNVITDAESGNVVFPSALHRGK----LTISVSTDGASPKLAKKI 136 (202)
T ss_pred CCHH-----------HHHHHHHH-HH---h---CCcEEECCCCccCeEEEeeEEEcCC----eEEEEECCCCChHHHHHH
Confidence 4321 24333222 21 1 23344445664 334444333222 356776665555555555
Q ss_pred HHHc
Q 018760 192 ADHL 195 (350)
Q Consensus 192 a~~l 195 (350)
.+++
T Consensus 137 r~~i 140 (202)
T PRK06718 137 RDEL 140 (202)
T ss_pred HHHH
Confidence 5544
No 188
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.88 E-value=0.0031 Score=59.99 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=63.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVI 110 (350)
|||.|+|| |.+|+.++..|++.|. +|+.++++.++.. .+... ..++... +| . ++++++|+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~----~l~~~-----~v~~v~~Dl~d~~~l~~al~g~d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKAS----FLKEW-----GAELVYGDLSLPETLPPSFKGVTAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhh----hHhhc-----CCEEEECCCCCHHHHHHHHCCCCEEE
Confidence 69999998 9999999999999985 8999999865432 12211 1222211 12 2 4689999999
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.+++.... ...++...|..-...+.+.+++.+-+- +|.+|
T Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr-~I~~S 109 (317)
T CHL00194 70 DASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIKR-FIFFS 109 (317)
T ss_pred ECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCCE-EEEec
Confidence 98653211 111223345555666777777665443 44444
No 189
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.88 E-value=0.0045 Score=53.04 Aligned_cols=67 Identities=9% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEEe
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi~ 112 (350)
-+..||.|||+|.+|...+..|+..+. +|++++ ++..+ ++.+.. ...+. ...+ ++++++|+||.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga--~V~VIs--p~~~~----~l~~l~----~i~~~-~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA--FVTVVS--PEICK----EMKELP----YITWK-QKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEc--CccCH----HHHhcc----CcEEE-ecccChhcCCCceEEEEC
Confidence 355799999999999999999999885 899996 33332 222211 11222 1223 469999999998
Q ss_pred cC
Q 018760 113 AG 114 (350)
Q Consensus 113 ~g 114 (350)
.+
T Consensus 78 T~ 79 (157)
T PRK06719 78 TN 79 (157)
T ss_pred CC
Confidence 53
No 190
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.87 E-value=0.004 Score=61.23 Aligned_cols=73 Identities=18% Similarity=0.346 Sum_probs=56.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
+..|+.|||||-||.-++..|...++ .+|++..++.+++...+..+. .++..-++. +.+.++|+||.+.+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~--------~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG--------AEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC--------CeeecHHHHHHhhhhCCEEEEecC
Confidence 44689999999999999999999997 699999999988875554444 123322343 67999999999977
Q ss_pred CCc
Q 018760 115 ARQ 117 (350)
Q Consensus 115 ~~~ 117 (350)
.|.
T Consensus 248 a~~ 250 (414)
T COG0373 248 APH 250 (414)
T ss_pred CCc
Confidence 653
No 191
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.014 Score=59.11 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SD 107 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aD 107 (350)
.++|.|.|| |++|+.++..++..+. .+|+++|.+|-++..+..++.+..+. ...+.... .|+ .++++ .|
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~-~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPE-LKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCC-cceEEEecccccHHHHHHHHhcCCCc
Confidence 468999999 9999999999999876 69999999998888777777765321 11121111 232 45777 99
Q ss_pred EEEEecCCCcCccc--cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc----CCcchH
Q 018760 108 LCIVTAGARQIAGE--SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA----NPVDIL 160 (350)
Q Consensus 108 iVIi~~g~~~~~g~--~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NP~~~~ 160 (350)
+|+-+|..-.-|-. .-.+-...|+-=-+.+++...+..=+.++++-| ||.++|
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence 99999864433322 245556777777778888888777666666554 676664
No 192
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.85 E-value=0.0061 Score=56.09 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCC---------CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceEEEcCCc-
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFV---------EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKILASVDY- 100 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~---------~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v~~t~~~- 100 (350)
..||+|.|||+.|..++.+|.....- ++++++|..- ++ +......+.+ |....+- ..++
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~---~~~~~~~--~~~L~ 99 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR---FANPERE--SGDLE 99 (254)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH---HcCcccc--cCCHH
Confidence 46999999999999999887765421 3899999853 22 2111112111 2111111 2355
Q ss_pred cccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCcE
Q 018760 101 AVTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNRV 175 (350)
Q Consensus 101 ~al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~rv 175 (350)
++++ ++|++|=+.+.+ |- +-+++.+.|.++|++.+|+-.|||.. +..+-+++.+. -+.+
T Consensus 100 eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ai 163 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE--GRAI 163 (254)
T ss_pred HHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC--CCEE
Confidence 6788 999988776533 21 12456778888899999999999985 56667777762 2478
Q ss_pred eeecCCccHH
Q 018760 176 IGSGTNLDSS 185 (350)
Q Consensus 176 iG~g~~ld~~ 185 (350)
|++|..-+..
T Consensus 164 ~AtGspf~pv 173 (254)
T cd00762 164 FASGSPFHPV 173 (254)
T ss_pred EEECCCCCCc
Confidence 9998866544
No 193
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.85 E-value=0.0038 Score=55.70 Aligned_cols=87 Identities=14% Similarity=0.215 Sum_probs=54.4
Q ss_pred ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760 14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~ 93 (350)
|.|...+...-++..-. ....+.++|+|+|.|+||+.++..|...|. +|+.+|+++++++.....+ ..+
T Consensus 6 g~Gv~~~~~~~~~~~~~-~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~--~Vvv~D~~~~~~~~~~~~~--------g~~ 74 (200)
T cd01075 6 AYGVFLGMKAAAEHLLG-TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA--KLIVADINEEAVARAAELF--------GAT 74 (200)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHc--------CCE
Confidence 44444444444444300 113355789999999999999999999985 9999999987655322211 112
Q ss_pred EEEcCCcccc-CCCCEEEEec
Q 018760 94 ILASVDYAVT-AGSDLCIVTA 113 (350)
Q Consensus 94 v~~t~~~~al-~~aDiVIi~~ 113 (350)
.. + ..+.+ .+||+++.++
T Consensus 75 ~v-~-~~~l~~~~~Dv~vp~A 93 (200)
T cd01075 75 VV-A-PEEIYSVDADVFAPCA 93 (200)
T ss_pred EE-c-chhhccccCCEEEecc
Confidence 22 1 12222 3799999775
No 194
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.84 E-value=0.0053 Score=59.31 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 35689999999999999999999997 6999999873
No 195
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.83 E-value=0.011 Score=51.61 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=68.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
.....+|+|||.|.+|+.+|..+..-|. +|+.+|+...... ...+. .+.. .+. +.++.||+|+++
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~----~~~~~-------~~~~-~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEE----GADEF-------GVEY-VSLDELLAQADIVSLH 98 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHH----HHHHT-------TEEE-SSHHHHHHH-SEEEE-
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhh----hcccc-------ccee-eehhhhcchhhhhhhh
Confidence 4556799999999999999999998886 9999999875332 11111 1222 255 568999999998
Q ss_pred cCC-CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 113 AGA-RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 113 ~g~-~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
... +...+.- |. +.+....+++++||++-..-+-...+.+. +...++-|.
T Consensus 99 ~plt~~T~~li-------~~-------~~l~~mk~ga~lvN~aRG~~vde~aL~~a--L~~g~i~ga 149 (178)
T PF02826_consen 99 LPLTPETRGLI-------NA-------EFLAKMKPGAVLVNVARGELVDEDALLDA--LESGKIAGA 149 (178)
T ss_dssp SSSSTTTTTSB-------SH-------HHHHTSTTTEEEEESSSGGGB-HHHHHHH--HHTTSEEEE
T ss_pred hccccccceee-------ee-------eeeeccccceEEEeccchhhhhhhHHHHH--HhhccCceE
Confidence 642 2222221 11 22334467899999986543333344333 223466554
No 196
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.83 E-value=0.0062 Score=58.23 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=56.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+++|||+|..+...+..++.-..+.+|.++|+++++++..+..+++. ..++....+. +++++||+|+.+..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-----GFAVNTTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-----CCcEEEECCHHHHhcCCCEEEEecC
Confidence 45689999999999988877776655689999999999988666555432 2345545565 67999999998753
No 197
>PLN03139 formate dehydrogenase; Provisional
Probab=96.81 E-value=0.0096 Score=58.41 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
....++|+|||.|.||..++..|..-|. +|+.+|......+ ..... .+....+. +.+++||+|+++
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~sDvV~l~ 262 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC--NLLYHDRLKMDPE-----LEKET------GAKFEEDLDAMLPKCDVVVIN 262 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC--EEEEECCCCcchh-----hHhhc------CceecCCHHHHHhhCCEEEEe
Confidence 3456799999999999999999987775 8999998753222 11111 12222355 567999999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG 179 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g 179 (350)
.... + ++ ..++ | .+.+....|++++||++--.=+-...+.+. +...++-|.|
T Consensus 263 lPlt--~-~T-~~li--~-------~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A--L~sG~l~GAa 314 (386)
T PLN03139 263 TPLT--E-KT-RGMF--N-------KERIAKMKKGVLIVNNARGAIMDTQAVADA--CSSGHIGGYG 314 (386)
T ss_pred CCCC--H-HH-HHHh--C-------HHHHhhCCCCeEEEECCCCchhhHHHHHHH--HHcCCceEEE
Confidence 5321 1 11 1112 2 234444578999999974332333333333 2334666653
No 198
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.80 E-value=0.0044 Score=57.34 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=62.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc--cCCCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV--TAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a--l~~aDiVIi~~ 113 (350)
+||+|||+|.+|..++..|..... +.-+.++|+++++.+. +... .+ ..++.++ ....|+||.|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~----~~~~------~~--~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPA----LAGR------VA--LLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHH----hhcc------Cc--ccCCHHHHhhcCCCEEEECC
Confidence 699999999999999998876542 2234457776654442 2211 12 2346655 37899999998
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~ 158 (350)
+ ...+++++..+-+.+.|-+++.++==.|
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence 5 4678889999988777755544443333
No 199
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.80 E-value=0.0056 Score=58.45 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
.+||+|||+|+||.+++..|...+. ++++.+... ++++ .+.. . ..++ ++..+++++||+|++++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~~----~a~~-~----Gv~~--~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL--NVIVGLRKGGASWK----KATE-D----GFKV--GTVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC--eEEEEECcChhhHH----HHHH-C----CCEE--CCHHHHHhcCCEEEEeC
Confidence 4689999999999999999999886 676655543 3222 1211 1 1222 33336789999999996
No 200
>PLN02778 3,5-epimerase/4-reductase
Probab=96.78 E-value=0.029 Score=53.04 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~ 112 (350)
....|||.|+|| |.+|++++..|+..|. +|++...+....+....++. . .++|+||-+
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~------------------~-~~~D~ViH~ 64 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADID------------------A-VKPTHVFNA 64 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHH------------------h-cCCCEEEEC
Confidence 344589999998 9999999999999885 77655433222221111111 1 257999998
Q ss_pred cCCCcCcc-----ccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760 113 AGARQIAG-----ESRLNLLQRNLSLFKAIIPPLVKYSPD 147 (350)
Q Consensus 113 ~g~~~~~g-----~~r~~~~~~n~~i~~~i~~~i~~~~p~ 147 (350)
++....+. ....+.+..|+.....+++.+++....
T Consensus 65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 87543221 234566777888888888888876433
No 201
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.78 E-value=0.0081 Score=53.81 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=72.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi~~ 113 (350)
+..||.|||+|.+|..-+..|+..|. +|++++.+.. + ...++... ....+.. .++ +.+.++|+||.+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga--~VtVvsp~~~--~-~l~~l~~~----~~i~~~~-~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA--QLRVIAEELE--S-ELTLLAEQ----GGITWLA-RCFDADILEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC--EEEEEcCCCC--H-HHHHHHHc----CCEEEEe-CCCCHHHhCCcEEEEECC
Confidence 34599999999999999999999885 8999987653 1 11223221 1223321 233 5689999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~ 190 (350)
+.+. -|.++.... ++ .++.+| +++|. +...+...+..+ =.|++.|.--+-++.+.
T Consensus 78 ~d~~-----------ln~~i~~~a----~~---~~ilvn~~d~~e~~~f~~pa~~~~g~----l~iaisT~G~sP~la~~ 135 (205)
T TIGR01470 78 DDEE-----------LNRRVAHAA----RA---RGVPVNVVDDPELCSFIFPSIVDRSP----VVVAISSGGAAPVLARL 135 (205)
T ss_pred CCHH-----------HHHHHHHHH----HH---cCCEEEECCCcccCeEEEeeEEEcCC----EEEEEECCCCCcHHHHH
Confidence 5321 133333222 21 233344 45664 344443333322 34577666555555555
Q ss_pred HHHHc
Q 018760 191 LADHL 195 (350)
Q Consensus 191 la~~l 195 (350)
+.+++
T Consensus 136 lr~~i 140 (205)
T TIGR01470 136 LRERI 140 (205)
T ss_pred HHHHH
Confidence 55444
No 202
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.77 E-value=0.0057 Score=59.17 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+++|||+|..+...+..++.-..+.+|.++++++++++..+.++.+. ..++....+. +++++||+|+.+..
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-----GLRIVACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCHHHHHhcCCEEEEecC
Confidence 34689999999998888766665445689999999999888777676641 2345555565 67999999998753
No 203
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.76 E-value=0.021 Score=54.50 Aligned_cols=112 Identities=14% Similarity=0.244 Sum_probs=67.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CCcc----ccC--CCCE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VDYA----VTA--GSDL 108 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~~~----al~--~aDi 108 (350)
|||.|+|| |.+|++++..|++.+. +|+++|+..+........+.+... ....+. .. +|.+ +++ ++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALLTEILHDHAIDT 76 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC--CCceEEEccCCCHHHHHHHHhcCCCCE
Confidence 68999998 9999999999999885 899998754322221112222110 111111 11 1222 233 5899
Q ss_pred EEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 109 CIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 109 VIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
||.+++.... ......+.+..|+.....+++.+.+..... +|.+|
T Consensus 77 vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 123 (338)
T PRK10675 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS 123 (338)
T ss_pred EEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence 9998865321 112234667778888888888888764333 44444
No 204
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.75 E-value=0.014 Score=55.41 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred CeEEEEcCCh--------------------hHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHHHHhhcCCCceEEE
Q 018760 38 TKISVIGTGN--------------------VGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQHAAAFLPRTKILA 96 (350)
Q Consensus 38 ~KI~IIGAG~--------------------vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~~~~~~~~~~~v~~ 96 (350)
|||+|-|||+ -|+++|..|+..|+ +|+++|+++++++ .....+.+. ...+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~Laea-----GA~~-- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDA-----GVKV-- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHC-----CCee--
Confidence 6888888875 27788999998886 9999999887553 222334432 1222
Q ss_pred cCC-ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHHHHHH
Q 018760 97 SVD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILTYVAW 165 (350)
Q Consensus 97 t~~-~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~~~~~ 165 (350)
+++ .++.++||+||++... ...+++++..+... .+.+++|..| .+.+.+-+.+.
T Consensus 72 AaS~aEAAa~ADVVIL~LPd---------------~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e 128 (341)
T TIGR01724 72 VSDDKEAAKHGEIHVLFTPF---------------GKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLE 128 (341)
T ss_pred cCCHHHHHhCCCEEEEecCC---------------HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 334 4788999999999642 23333333334443 4556666554 44444444443
No 205
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.75 E-value=0.0057 Score=59.92 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=51.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC-------------------ccchHHHHHHHHHHhhcCCCceEEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK-------------------ADKLRGEMLDLQHAAAFLPRTKILA 96 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~-------------------~~~l~~~~~dl~~~~~~~~~~~v~~ 96 (350)
+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+ ..|++..+..+.... +..++..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~~ 209 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQVEA 209 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCEEEE
Confidence 35689999999999999999999997 699999987 234444444444432 3344433
Q ss_pred cCC------c-cccCCCCEEEEecC
Q 018760 97 SVD------Y-AVTAGSDLCIVTAG 114 (350)
Q Consensus 97 t~~------~-~al~~aDiVIi~~g 114 (350)
... . +.++++|+||.+..
T Consensus 210 ~~~~~~~~~~~~~~~~~D~Vv~~~d 234 (376)
T PRK08762 210 VQERVTSDNVEALLQDVDVVVDGAD 234 (376)
T ss_pred EeccCChHHHHHHHhCCCEEEECCC
Confidence 221 1 23688999999853
No 206
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.75 E-value=0.0034 Score=62.20 Aligned_cols=98 Identities=9% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~ 115 (350)
..||.|||+|.+|..++..|...|. .+|+++.++.++++..+..+.. ..+....+. +.+.+||+||.|.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~-------~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN-------ASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC-------CeEecHHHHHHHhccCCEEEECcCC
Confidence 4689999999999999999998886 5899999998877644333221 123222343 668999999999876
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL 160 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~ 160 (350)
|. |-.+. + . + + ...-++|-.+.|=|+-
T Consensus 253 ~~-~vi~~-~-----------~---~-~-~~~~~~iDLavPRdid 279 (414)
T PRK13940 253 LE-YIVTC-K-----------Y---V-G-DKPRVFIDISIPQALD 279 (414)
T ss_pred CC-eeECH-H-----------H---h-C-CCCeEEEEeCCCCCCC
Confidence 63 11110 0 0 0 1 1234678889998874
No 207
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.74 E-value=0.0026 Score=51.89 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=45.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEc-CCccccCCCCEEEEec
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILAS-VDYAVTAGSDLCIVTA 113 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t-~~~~al~~aDiVIi~~ 113 (350)
||+|||| |.+|..++..|.....+..+.+++.....-. .+....... ....+... .+.+.+.++|+||.|.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK----PLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS----BHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC----eeehhccccccccceeEeecchhHhhcCCEEEecC
Confidence 7999997 9999999999999766555667777652221 123222111 11223222 3457789999999995
No 208
>PLN02928 oxidoreductase family protein
Probab=96.72 E-value=0.0061 Score=59.07 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...++|+|||.|.+|+.+|..+..-|. +|+.+|+...+.......+................+. +.++.||+|+++.
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 445799999999999999999987775 9999998743211100000000000000000011244 5689999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
... + + |..++. .+.+....|.+++||++--.=+-...+.+. +...++-|.
T Consensus 235 Plt--~-~--------T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~A--L~~g~i~gA 284 (347)
T PLN02928 235 TLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAA--LESGHLGGL 284 (347)
T ss_pred CCC--h-H--------hhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEE
Confidence 422 1 1 111111 233444578899999985433333344333 334577555
No 209
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.72 E-value=0.0048 Score=58.31 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=67.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVI 110 (350)
|||.|+|+ |.+|+.++..|+..+. +|+++|++++.... +.+. ..++... ++ . +.++++|+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~-----~~~~~~~D~~~~~~l~~~~~~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRRN----LEGL-----DVEIVEGDLRDPASLRKAVAGCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccccc----cccC-----CceEEEeeCCCHHHHHHHHhCCCEEE
Confidence 58999998 9999999999999885 89999998765321 1110 1122111 12 2 3477899999
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.+++...............|+.....+++.+.+.+-.. +|..|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 112 (328)
T TIGR03466 70 HVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVER-VVYTS 112 (328)
T ss_pred EeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe
Confidence 98764322223344556667777777777777654333 44444
No 210
>PRK06046 alanine dehydrogenase; Validated
Probab=96.72 E-value=0.0063 Score=58.43 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g 114 (350)
...+|+|||+|.+|...+..+....-+.++.++|+++++++..+.++.+.. ..++....+.+ +++ +|+|+++..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~-aDiVv~aTp 202 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV----GCDVTVAEDIEEACD-CDILVTTTP 202 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhh-CCEEEEecC
Confidence 356899999999999998877765556899999999988887666665432 23444455664 465 999999854
No 211
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.72 E-value=0.0099 Score=49.77 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
||+|+|+|.+|+.++..|+..|. .+++|+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 68999999999999999999997 689999976
No 212
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.71 E-value=0.0083 Score=52.97 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCCc----cccCCCCE
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVDY----AVTAGSDL 108 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~~----~al~~aDi 108 (350)
+.+++.|+|+ |.+|..++..|+..+. +|++++++.++++.....+.+.. ...+.. ..+. ++++++|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~di 100 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF----GEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc----CCcEEEeeCCCHHHHHHHHhcCCE
Confidence 4579999997 9999999999998773 89999999888776555554221 112221 1222 56889999
Q ss_pred EEEecC
Q 018760 109 CIVTAG 114 (350)
Q Consensus 109 VIi~~g 114 (350)
||.+..
T Consensus 101 Vi~at~ 106 (194)
T cd01078 101 VFAAGA 106 (194)
T ss_pred EEECCC
Confidence 888754
No 213
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.71 E-value=0.009 Score=55.03 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+..||+|||+|.+|+.++..|+..|+ .+++|+|-|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 45699999999999999999999996 6999999753
No 214
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.71 E-value=0.0091 Score=58.26 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
..+||+|||. |-||..++..|.+.. ..+|+-+|++.+ . .++. +.+++||+||+|+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~--------------------~--~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP--------------------G--SLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc--------------------c--cCCHHHHhcCCCEEEEeC
Confidence 4579999999 999999999999762 348888997411 0 1133 5688999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.. ..+.+++.++++......|+++|.-++
T Consensus 60 Pv------------~~~~~~l~~l~~~~~~l~~~~iVtDVg 88 (370)
T PRK08818 60 PI------------RHTAALIEEYVALAGGRAAGQLWLDVT 88 (370)
T ss_pred CH------------HHHHHHHHHHhhhhcCCCCCeEEEECC
Confidence 42 234555555555432245677666553
No 215
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.71 E-value=0.012 Score=58.12 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=68.7
Q ss_pred ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760 14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~ 93 (350)
|+....++. +.-+. .....+|+|+|+|.+|..++..+...|. +|+.+|+++.+++. + .... ..
T Consensus 185 g~s~~~~i~----r~t~~--~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~-A----~~~G----~~ 247 (413)
T cd00401 185 RESLIDGIK----RATDV--MIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQ-A----AMEG----YE 247 (413)
T ss_pred chhhHHHHH----HhcCC--CCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHH-H----HhcC----CE
Confidence 555556665 32211 2345699999999999999999988886 79999999887652 1 1111 12
Q ss_pred EEEcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 94 v~~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
+. ...++++++|+||.+.|.+ .++.. ..+....+.+++++++.+
T Consensus 248 ~~--~~~e~v~~aDVVI~atG~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 248 VM--TMEEAVKEGDIFVTTTGNK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred Ec--cHHHHHcCCCEEEECCCCH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 21 1125678999999987632 12211 113334678899999864
No 216
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.70 E-value=0.0084 Score=56.82 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
+....|+.|||+|.+|..++..|...|. +|.++|+++++.+ . ... . ..+.....+. +.++++|+||.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~-~---~~~-~----G~~~~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLA-R---ITE-M----GLSPFHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH-H---HHH-c----CCeeecHHHHHHHhCCCCEEEEC
Confidence 3356799999999999999999998885 9999999976433 1 111 1 1122212233 568899999998
Q ss_pred c
Q 018760 113 A 113 (350)
Q Consensus 113 ~ 113 (350)
.
T Consensus 218 ~ 218 (296)
T PRK08306 218 I 218 (296)
T ss_pred C
Confidence 6
No 217
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.70 E-value=0.0071 Score=59.29 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...++|||+|..+...+..++.-. -+.+|.++|+++++++..+.++.+... ...++....+. +++++||+|+.+..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~--~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP--QITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC--CCceEEEeCCHHHHHcCCCEEEEccC
Confidence 468999999999999888777643 368999999999999877777765321 11135555665 67999999998753
No 218
>PLN02427 UDP-apiose/xylose synthase
Probab=96.68 E-value=0.0042 Score=60.73 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--hcCCCceEEEc--CC---c-cccC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--AFLPRTKILAS--VD---Y-AVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~~~~~~~v~~t--~~---~-~al~ 104 (350)
..++|||.|+|| |.+|+.++..|++.+- .+|+.+|++.++... +.... ......++... +| . ++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-~~V~~l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-HKVLALDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCC-CEEEEEecCchhhhh----hhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 446689999998 9999999999998741 389999987654431 11110 00112222211 12 2 3577
Q ss_pred CCCEEEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 105 GSDLCIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 105 ~aDiVIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
++|+||-+++.... ......+.+..|+.-...+.+...+.. ..+|.+|.
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 89999999874321 111223445556665566666666544 24555553
No 219
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.0055 Score=57.64 Aligned_cols=91 Identities=10% Similarity=0.215 Sum_probs=63.4
Q ss_pred hhhhhccccCCCCCCCCCCCCeEEEEcCCh-hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE
Q 018760 18 TQTFFKPINHAAPPSPTKRHTKISVIGTGN-VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96 (350)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~-vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~ 96 (350)
..||.+.++.-.. ..+..+|+|||+|. +|.+++..|+..+. .|++++.... ++.
T Consensus 143 ~~gii~~L~~~~i---~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~t~-------~L~------------- 197 (283)
T PRK14192 143 PAGIMRLLKAYNI---ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSRTQ-------NLP------------- 197 (283)
T ss_pred HHHHHHHHHHcCC---CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCCch-------hHH-------------
Confidence 3788887776554 45566999999987 99999999999885 8999986221 111
Q ss_pred cCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCc
Q 018760 97 SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPV 157 (350)
Q Consensus 97 t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~ 157 (350)
+.+++||+||.+.|.|. + -.. ....|.++++-+. ||.
T Consensus 198 ----~~~~~aDIvI~AtG~~~-~--v~~-----------------~~lk~gavViDvg~n~~ 235 (283)
T PRK14192 198 ----ELVKQADIIVGAVGKPE-L--IKK-----------------DWIKQGAVVVDAGFHPR 235 (283)
T ss_pred ----HHhccCCEEEEccCCCC-c--CCH-----------------HHcCCCCEEEEEEEeec
Confidence 22379999999987442 1 000 1136788888874 885
No 220
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.66 E-value=0.002 Score=56.05 Aligned_cols=71 Identities=28% Similarity=0.386 Sum_probs=51.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~ 115 (350)
|||+|||| |.+|+.++...+.+|. ||+.+=+|+.++... +... . ....|.--+. .+++.+-|+||.+.|.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~----~~~~-i-~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR----QGVT-I-LQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc----ccce-e-ecccccChhhhHhhhcCCceEEEeccC
Confidence 79999999 9999999999999996 999999999877531 1110 0 0112221111 2579999999999775
Q ss_pred C
Q 018760 116 R 116 (350)
Q Consensus 116 ~ 116 (350)
+
T Consensus 73 ~ 73 (211)
T COG2910 73 G 73 (211)
T ss_pred C
Confidence 5
No 221
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.65 E-value=0.01 Score=54.50 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|.|.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 35699999999999999999999996 6999999753
No 222
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.65 E-value=0.041 Score=52.00 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV 109 (350)
.+||.|+|| |.+|+.++..|+..|. +|++++++.+.... ...+...........+... ++ . +.++++|+|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 368999998 9999999999999985 89888887654321 1122211100011222211 11 2 347889999
Q ss_pred EEecCCCcCc-cccHHHHHHhhHHHHHHHHhhhhcc
Q 018760 110 IVTAGARQIA-GESRLNLLQRNLSLFKAIIPPLVKY 144 (350)
Q Consensus 110 Ii~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~ 144 (350)
|.+++..... .....+.+..|+.-...+.+.+.+.
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998643211 1122355666888888888877665
No 223
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.60 E-value=0.0029 Score=61.83 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-cccCCCCEEEE
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-AVTAGSDLCIV 111 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~al~~aDiVIi 111 (350)
.++.||+|+|+|.+|...+..+...|. +|..+|+++++++. +..... ........ .++ +.++++|+||.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~----l~~~~g--~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQ----LDAEFG--GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHhcC--ceeEeccCCHHHHHHHHccCCEEEE
Confidence 456789999999999999999998886 79999999876653 222111 01111111 122 45789999999
Q ss_pred ecCCC
Q 018760 112 TAGAR 116 (350)
Q Consensus 112 ~~g~~ 116 (350)
+++.+
T Consensus 237 a~~~~ 241 (370)
T TIGR00518 237 AVLIP 241 (370)
T ss_pred ccccC
Confidence 97554
No 224
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.58 E-value=0.01 Score=58.69 Aligned_cols=117 Identities=14% Similarity=0.201 Sum_probs=67.5
Q ss_pred hhhccccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-
Q 018760 20 TFFKPINHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t- 97 (350)
|++..+.+-++.....+.++|.|+|| |.+|.+++..|++.|. +|+++++++++++. .+.... ........
T Consensus 161 ~~~~~~d~~~~ta~sl~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~~---~~~~~~---~~v~~v~~D 232 (406)
T PRK07424 161 GTFTLVDKLMGTALSLKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKITL---EINGED---LPVKTLHWQ 232 (406)
T ss_pred eeEEEeehhcCcccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH---HHhhcC---CCeEEEEee
Confidence 44444444443333345568999999 9999999999999885 89999998765532 121111 01111111
Q ss_pred -CCc----cccCCCCEEEEecCCCcCccccH---HHHHHhh----HHHHHHHHhhhhcc
Q 018760 98 -VDY----AVTAGSDLCIVTAGARQIAGESR---LNLLQRN----LSLFKAIIPPLVKY 144 (350)
Q Consensus 98 -~~~----~al~~aDiVIi~~g~~~~~g~~r---~~~~~~n----~~i~~~i~~~i~~~ 144 (350)
+|. +.+.+.|++|..+|.......+. .+.+.-| ..+++.+.+.+++.
T Consensus 233 vsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 233 VGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred CCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 23678999999887643222221 2223334 45566666666553
No 225
>PRK08223 hypothetical protein; Validated
Probab=96.58 E-value=0.012 Score=55.35 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||.|||+|.+|+.++..|+..|+ .+|.|+|-|
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 35689999999999999999999997 689999975
No 226
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.58 E-value=0.0081 Score=58.84 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
....++|+|||.|+||+.++..+..-|. +|+.+|......+ . ... ..+. +.++.||+|++.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~--~V~~~Dp~~~~~~---------~----~~~---~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW--KVLVCDPPRQEAE---------G----DGD---FVSLERILEECDVISLH 174 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCcccccc---------c----Ccc---ccCHHHHHhhCCEEEEe
Confidence 3456799999999999999999988886 9999997543111 0 011 1245 457899999998
Q ss_pred cCCCcC-ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 113 AGARQI-AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 113 ~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...... +-.++ .++ |. +.+....|++++||++-
T Consensus 175 ~Plt~~g~~~T~-~li--~~-------~~l~~mk~gailIN~aR 208 (381)
T PRK00257 175 TPLTKEGEHPTR-HLL--DE-------AFLASLRPGAWLINASR 208 (381)
T ss_pred CcCCCCcccccc-ccC--CH-------HHHhcCCCCeEEEECCC
Confidence 643211 00111 111 21 23344468899999874
No 227
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=96.57 E-value=0.06 Score=51.07 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=68.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCE
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDL 108 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDi 108 (350)
+.++|.|+|+ |.+|++++..|+..|. +|++++++.+..... ..+...........+... ++. +.++++|+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 4568999998 9999999999999985 888888877654321 111111000011222211 122 24678999
Q ss_pred EEEecCCCcCc-c-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 109 CIVTAGARQIA-G-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 109 VIi~~g~~~~~-g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
||.+++..... . ......+..|+.-...+.+.+.+......+|++|
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 99998753211 1 1123445667777777777776643223455544
No 228
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.56 E-value=0.014 Score=56.17 Aligned_cols=113 Identities=13% Similarity=0.046 Sum_probs=68.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GSD 107 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~aD 107 (350)
.++|.|+|+ |.+|++++..|++.|. +|+.+|++.+........+.. . ........ ++. +.++ +.|
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A---KKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c---CCceEEEccCCCHHHHHHHHhhcCCC
Confidence 368999998 9999999999999985 899999877544322111211 0 11121111 122 2233 359
Q ss_pred EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+||.+++.+... .......+..|+.-...+.+.+.+.+....+|++|.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 999998743211 112344566788777888887776552334556554
No 229
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.55 E-value=0.0065 Score=56.39 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=65.5
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcC
Q 018760 40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQI 118 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~ 118 (350)
|.|+|| |.+|+.++..|+..+. +|+.++++++....... .... .+......++++++|+||.+++.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~D~Vvh~a~~~~~ 70 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANTKW-----EGYK---PWAPLAESEALEGADAVINLAGEPIA 70 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcccc-----eeee---cccccchhhhcCCCCEEEECCCCCcc
Confidence 578998 9999999999999885 99999998765432110 0000 01111123568899999999876532
Q ss_pred cc----ccHHHHHHhhHHHHHHHHhhhhccCC
Q 018760 119 AG----ESRLNLLQRNLSLFKAIIPPLVKYSP 146 (350)
Q Consensus 119 ~g----~~r~~~~~~n~~i~~~i~~~i~~~~p 146 (350)
.+ .....+...|+...+.+.+.+.+...
T Consensus 71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred cccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 21 12345566788888999999888754
No 230
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.55 E-value=0.0044 Score=54.04 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHH-HHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc
Q 018760 10 LGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQ-TILTQDFVEELALVDAKADKLRGEMLDLQHAAAF 88 (350)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~-~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~ 88 (350)
||--|-|..+--++.|-.+.- ...+..++.|||+|++|.+++. .+..+.-..-+..+|+++++.-. ...
T Consensus 59 lGkrG~GYnV~~L~~ff~~~L--g~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~---~~~----- 128 (211)
T COG2344 59 LGKRGYGYNVKYLRDFFDDLL--GQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT---KIG----- 128 (211)
T ss_pred cCCCCCCccHHHHHHHHHHHh--CCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc---ccC-----
Confidence 445555555443333223322 2445679999999999999984 56655545678899999974421 111
Q ss_pred CCCceEEEcCCcc-ccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760 89 LPRTKILASVDYA-VTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159 (350)
Q Consensus 89 ~~~~~v~~t~~~~-al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~ 159 (350)
...|.--++.+ -++ +.|+.|+|+. ....+++++.+.+.+=++ ++++| |+.+
T Consensus 129 --~v~V~~~d~le~~v~~~dv~iaiLtVP----------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l 182 (211)
T COG2344 129 --DVPVYDLDDLEKFVKKNDVEIAILTVP----------------AEHAQEVADRLVKAGVKG-ILNFT-PVRL 182 (211)
T ss_pred --CeeeechHHHHHHHHhcCccEEEEEcc----------------HHHHHHHHHHHHHcCCce-EEecc-ceEe
Confidence 22333222332 233 8899999963 234456677777766666 56776 5554
No 231
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.52 E-value=0.011 Score=57.48 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t 97 (350)
..||+|+|+|.+|+.++..|+..|+ +++.|+|.|. .|++..+..|... .+..++...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~---np~v~v~~~ 103 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL---NPDVKVTVS 103 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH---CCCcEEEEE
Confidence 4699999999999999999999997 6899999764 2333333333332 234455432
Q ss_pred CC-------ccccCCCCEEEEec
Q 018760 98 VD-------YAVTAGSDLCIVTA 113 (350)
Q Consensus 98 ~~-------~~al~~aDiVIi~~ 113 (350)
.. .+-++++|+||.+.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECC
Confidence 11 13478999999985
No 232
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.52 E-value=0.02 Score=54.73 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=68.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEE
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiV 109 (350)
++||.|+|| |.+|++++..|++.|. +|++++++.+..... ..+...... ...++... +|. +.++++|+|
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~v 84 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKI-AHLRALQEL-GDLKIFGADLTDEESFEAPIAGCDLV 84 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHH-HHHHhcCCC-CceEEEEcCCCChHHHHHHHhcCCEE
Confidence 568999998 9999999999999885 888888776543211 111111100 11222211 122 346789999
Q ss_pred EEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|.+++.......+ ..+++..|+.-...+.+.+.+.+.-..+|.+|
T Consensus 85 ih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 85 FHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred EEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 9988642211122 23455678888888888877753222344443
No 233
>PRK04148 hypothetical protein; Provisional
Probab=96.52 E-value=0.009 Score=49.68 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~ 112 (350)
..+.+||++||+| -|..+|..|.+.|. +|+.+|+++++++. ..+........++. ..+.+-.++||+|...
T Consensus 14 ~~~~~kileIG~G-fG~~vA~~L~~~G~--~ViaIDi~~~aV~~----a~~~~~~~v~dDlf-~p~~~~y~~a~liysi 84 (134)
T PRK04148 14 KGKNKKIVELGIG-FYFKVAKKLKESGF--DVIVIDINEKAVEK----AKKLGLNAFVDDLF-NPNLEIYKNAKLIYSI 84 (134)
T ss_pred cccCCEEEEEEec-CCHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHhCCeEEECcCC-CCCHHHHhcCCEEEEe
Confidence 3455799999999 88888988998885 99999999985542 22221000011111 1233557899998877
No 234
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.51 E-value=0.00075 Score=66.18 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=47.1
Q ss_pred EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCCc----cccCCCCEEEEec
Q 018760 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVDY----AVTAGSDLCIVTA 113 (350)
Q Consensus 40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~~----~al~~aDiVIi~~ 113 (350)
|.|+|+|.+|+.++..|++.....+|++.|++.++++.....+.. ...+... -+|. +.++++|+||.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLG-----DRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TT-----TTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccc-----cceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999999999999999988655899999999988765444311 1222211 1232 3589999999998
Q ss_pred CC
Q 018760 114 GA 115 (350)
Q Consensus 114 g~ 115 (350)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 64
No 235
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.50 E-value=0.041 Score=50.39 Aligned_cols=44 Identities=14% Similarity=0.380 Sum_probs=37.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
|++.|+|+ |.+|..++..|++.|. +|++.++++++++....++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 58999999 8999999999999995 89999999887765555554
No 236
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.50 E-value=0.0066 Score=58.11 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hhc---------CCCceEEEcCCccccCCCCEEEEecC
Q 018760 48 VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AAF---------LPRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~~---------~~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
||+.+|..++..++ +++|+|.|...+++-...+... ... .....+..+.|++.++++|+|+.++
T Consensus 1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav- 77 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAV- 77 (380)
T ss_pred CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccch-
Confidence 57788999999997 8999999976554322222211 100 0123344566889999999997774
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
.+|++...++...|+++||+. -|..||....-...+..-+ -.+++++|+
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~-~i~gsntSs~~~~~isa~l-d~~e~vvg~ 126 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPK-CIRGSNTSSLDINVISAGL-DRPEMVVGM 126 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCc-ceeeeccccCChHHHhhcc-Cchhhhccc
Confidence 358999999999999998765 3457776665333332222 235788776
No 237
>PRK06194 hypothetical protein; Provisional
Probab=96.48 E-value=0.07 Score=49.57 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=37.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|| |.+|+.++..|+..|. +|+++|++.++++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHH
Confidence 357999998 9999999999999985 89999998877765555544
No 238
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.47 E-value=0.016 Score=51.57 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=31.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|+|+|.+|+.++..|+..|+ .+++++|-+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 35699999999999999999999997 689999975
No 239
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.46 E-value=0.046 Score=52.73 Aligned_cols=115 Identities=11% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-c-CCCceEEEcCCc-------cccCC
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-F-LPRTKILASVDY-------AVTAG 105 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~-~~~~~v~~t~~~-------~al~~ 105 (350)
+++||.|+|| |.+|++++..|+..+. +|+.+|+..........++..... . ........ .|. +.+++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQ-GDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEE-ccCCCHHHHHHHhhC
Confidence 3479999998 9999999999999985 899999865322211111111000 0 01122221 231 23688
Q ss_pred CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 106 SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 106 aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+|+||-++.....+ ..........|+.-..++.+.+++....- +|.+|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEee
Confidence 99999998643211 12334556678888888888888764332 44443
No 240
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.46 E-value=0.032 Score=50.46 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=37.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|| |.+|..++..|++.|. +|+++++++++++....++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh
Confidence 3468999999 9999999999999985 89999999877664444443
No 241
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.45 E-value=0.043 Score=51.17 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..+|+|+|+|.+|+.++..|+..|+ .+|+|+|-|
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 45689999999999999999999997 689999976
No 242
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.45 E-value=0.025 Score=51.55 Aligned_cols=115 Identities=13% Similarity=0.178 Sum_probs=72.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCCE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSDL 108 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aDi 108 (350)
+-+.|.|| +.+|.++|..|++.|. +|+|..+..++|+.++.++.+.........|+-..+ .+.+...|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 34567799 7999999999999996 999999999999988877774110101112210000 134678999
Q ss_pred EEEecCCCcCcc---cc---HHHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760 109 CIVTAGARQIAG---ES---RLNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 109 VIi~~g~~~~~g---~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+|..+|...-.. .. -..++..|+. ..+-+.+.|.+.. .+.|||.+-
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~S 140 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGS 140 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecc
Confidence 999988643211 11 1234555644 4555566666543 456777763
No 243
>PLN02240 UDP-glucose 4-epimerase
Probab=96.44 E-value=0.079 Score=50.76 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEc--CCcc----ccC--C
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILAS--VDYA----VTA--G 105 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t--~~~~----al~--~ 105 (350)
+++||.|+|+ |.+|++++..|+..+. +|+++|+...........+.+... .....+.... ++.+ .++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 3469999998 9999999999999884 899998754322211112222110 0011222211 1222 222 6
Q ss_pred CCEEEEecCCCcC-cc-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 106 SDLCIVTAGARQI-AG-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 106 aDiVIi~~g~~~~-~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+|+||.+++.... +. ......+..|+.....+++.+.+..... +|.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 8999999875421 11 2234567778888888888777654333 44444
No 244
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.44 E-value=0.047 Score=49.80 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------- 102 (350)
.+++.|+|+ |.+|..++..|++.|. +|+++++++++.+....++.+.. ....+... ++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG---GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC---ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457999999 9999999999999986 89999999877765555554321 11111111 11111
Q ss_pred cCCCCEEEEecCCCcC-c--c---ccHHHHHHhhHHH----HHHHHhhhhccCCCeEEEEEc
Q 018760 103 TAGSDLCIVTAGARQI-A--G---ESRLNLLQRNLSL----FKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~-~--g---~~r~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~t 154 (350)
....|+||.++|.... + . +.-...+..|..- .+.+.+.+.+.++.+.++++|
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 1347999999876421 1 1 1112223344443 556666663333344555554
No 245
>PLN02494 adenosylhomocysteinase
Probab=96.43 E-value=0.02 Score=57.32 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=69.7
Q ss_pred ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760 14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93 (350)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~ 93 (350)
|+.+..|+. +.... .....+|+|+|+|.+|..++..+...|. +|+.+|+++.+... + ..+. + .
T Consensus 237 gqS~~d~i~----r~t~i--~LaGKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r~~e-A--~~~G--~----~ 299 (477)
T PLN02494 237 RHSLPDGLM----RATDV--MIAGKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPICALQ-A--LMEG--Y----Q 299 (477)
T ss_pred cccHHHHHH----HhcCC--ccCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhHH-H--HhcC--C----e
Confidence 566666666 33221 2345789999999999999999987776 89999999865431 1 1111 1 2
Q ss_pred EEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 94 ILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 94 v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
+. +. ++++.+|+||.+.|... ++. .+.+....+++++++++-+.
T Consensus 300 vv---~leEal~~ADVVI~tTGt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 300 VL---TLEDVVSEADIFVTTTGNKD---------------IIM--VDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred ec---cHHHHHhhCCEEEECCCCcc---------------chH--HHHHhcCCCCCEEEEcCCCC
Confidence 21 23 56889999999765321 110 23334456889999999864
No 246
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.43 E-value=0.012 Score=56.53 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...++|||+|..+..-+..+..---+.+|.++|++++..+..+.+++.... ..+...++. +++++||+|+.+.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~----~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG----EAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC----ccceeccCHHHHhhcCCEEEEec
Confidence 457999999998888887776655468999999999988887777776542 245556665 6899999999984
No 247
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.43 E-value=0.0066 Score=56.80 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR 91 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~ 91 (350)
-||.||..+|. ....+ ...++.|+|||..++++++.|++.+. .+|.+++++.++++..+..+. .
T Consensus 105 TD~~Gf~~~L~----~~~~~----~~~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~~----~--- 168 (272)
T PRK12550 105 TDYIAIAKLLA----SYQVP----PDLVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELYG----Y--- 168 (272)
T ss_pred cCHHHHHHHHH----hcCCC----CCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhC----C---
Confidence 47888887775 22221 12389999999999999999998886 589999999987765443321 1
Q ss_pred ceEEEcCCccccCCCCEEEEecC
Q 018760 92 TKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 92 ~~v~~t~~~~al~~aDiVIi~~g 114 (350)
.. ..+. ...++|+||.|..
T Consensus 169 -~~--~~~~-~~~~~dlvINaTp 187 (272)
T PRK12550 169 -EW--RPDL-GGIEADILVNVTP 187 (272)
T ss_pred -cc--hhhc-ccccCCEEEECCc
Confidence 11 0011 1256899999854
No 248
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.033 Score=50.45 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=36.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
++|.|+|| |.+|..++..|++.|. +|+++|+++++++....++.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLR 46 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 58999998 9999999999999985 89999999877765544544
No 249
>PLN02858 fructose-bisphosphate aldolase
Probab=96.40 E-value=0.0097 Score=67.28 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=50.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~ 115 (350)
.+||++||.|.||.+++..|+..|. +|+.+|+++++++. +.... ... ..+. +.+++||+||++...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~G-----a~~--~~s~~e~~~~aDvVi~~V~~ 390 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNF--SVCGYDVYKPTLVR----FENAG-----GLA--GNSPAEVAKDVDVLVIMVAN 390 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHcC-----Cee--cCCHHHHHhcCCEEEEecCC
Confidence 4789999999999999999999986 89999999876653 33221 112 2344 678899999999754
Q ss_pred C
Q 018760 116 R 116 (350)
Q Consensus 116 ~ 116 (350)
+
T Consensus 391 ~ 391 (1378)
T PLN02858 391 E 391 (1378)
T ss_pred h
Confidence 3
No 250
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.40 E-value=0.04 Score=55.08 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=63.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
+.++|.|+|+|.+|..+|..|+..|. +|+++|.+. +.++....++.. ...++...... +...++|+||.++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGE-----LGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHh-----cCCEEEeCCcchhHhhcCCEEEECC
Confidence 35689999999999999999999996 999999975 323222222221 12334322222 3457899999998
Q ss_pred CCCcCccccHHHH-HHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 114 GARQIAGESRLNL-LQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 114 g~~~~~g~~r~~~-~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|.+.. -.-... -.++++++...+....... ..+|-+|
T Consensus 77 g~~~~--~~~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~IT 114 (450)
T PRK14106 77 GVPLD--SPPVVQAHKKGIEVIGEVELAYRFSK--APIVAIT 114 (450)
T ss_pred CCCCC--CHHHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEe
Confidence 86422 111111 2245666555544333222 3345554
No 251
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.39 E-value=0.052 Score=51.92 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
++||+|+|.|++|...+..+...+-. ||+ ++|+++ +++. .. ..+..+.+. +.+.++|+|++|.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~-ELVgV~dr~~~~~~~-------~~------~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDM-ELVGVFSRRGAETLD-------TE------TPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCc-EEEEEEcCCcHHHHh-------hc------CCccccCCHHHhccCCCEEEEcC
Confidence 48999999999999998888776433 554 679885 3221 11 123323344 4568899999995
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEE--EEcCCcchHHH--HHHHHh-CCCCCcEeeecCCccHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL--IVANPVDILTY--VAWKLS-GLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~vi--v~tNP~~~~~~--~~~~~s-g~~~~rviG~g~~ld~~r~~ 188 (350)
+... .. +....+ -+...+.+.- .-.++.+.... .+.+.. +. -+++.|-+.....+.
T Consensus 69 Ps~t-----h~-------~~~~~~----L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~v---svi~~GwDPG~~si~ 129 (324)
T TIGR01921 69 GSAT-----DI-------PEQAPY----FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNV---SVISTGWDPGMFSIN 129 (324)
T ss_pred CCcc-----CH-------HHHHHH----HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCE---EEEECCCCcChHHHH
Confidence 4321 11 222222 1223332110 01111111111 122322 22 466777777777788
Q ss_pred HHHHHHcCCCCcceEEEEEee
Q 018760 189 FLLADHLDVNAQDVQAYIVGE 209 (350)
Q Consensus 189 ~~la~~l~v~p~~v~~~v~G~ 209 (350)
+.+++.+ -|+-.....||.
T Consensus 130 r~~~ea~--lp~g~~yt~wG~ 148 (324)
T TIGR01921 130 RVYGEAV--LPKGQTYTFWGP 148 (324)
T ss_pred HHHHhcc--CCCCcceeccCC
Confidence 8888876 777777778984
No 252
>PLN02214 cinnamoyl-CoA reductase
Probab=96.38 E-value=0.028 Score=54.18 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH-HHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE-MLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD 107 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~-~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD 107 (350)
++++|.|+|+ |.+|++++..|+..|. +|+.++++.++.... ...+... .....+... ++ . ++++++|
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG---KERLILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC---CCcEEEEecCcCChHHHHHHHhcCC
Confidence 3468999999 9999999999999985 899999876543211 1111110 011222211 12 2 3578899
Q ss_pred EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+||.+++... ....+.+..|+.-...+.+.+.+....- +|++|
T Consensus 84 ~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r-~V~~S 126 (342)
T PLN02214 84 GVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKR-VVITS 126 (342)
T ss_pred EEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEec
Confidence 9999987432 1234556667777788888777764333 44443
No 253
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.021 Score=53.50 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hc-C---CCceEEEcCC--cccc
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AF-L---PRTKILASVD--YAVT 103 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~-~---~~~~v~~t~~--~~al 103 (350)
......|.|.|+ +.+|+.+|..+++.+. .++|.|+|.+-.+..+..+++.. .+ + ..-++..+.+ .++.
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 334557888898 5889999999999995 89999999987766666666531 11 0 0111111111 1456
Q ss_pred CCCCEEEEecCCC-cCcc--ccHHHH---HHh----hHHHHHHHHhhhhccCCCeEEEEEc-----CCcchHHHHHHHH
Q 018760 104 AGSDLCIVTAGAR-QIAG--ESRLNL---LQR----NLSLFKAIIPPLVKYSPDCILLIVA-----NPVDILTYVAWKL 167 (350)
Q Consensus 104 ~~aDiVIi~~g~~-~~~g--~~r~~~---~~~----n~~i~~~i~~~i~~~~p~a~viv~t-----NP~~~~~~~~~~~ 167 (350)
.+.|++|+.||.- .++. .++.++ +.- -..+.+.+.+.|.+.+...+|-+.| -|.....|-..|+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~ 191 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKF 191 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHH
Confidence 8899999998853 3332 222221 112 2567888999999866444443333 2344445555544
No 254
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.36 E-value=0.077 Score=49.19 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=44.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEec
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~ 113 (350)
+|||+|+|+ |.||..++..+...+-+.-+.++|.++++.... . ...+..++|++ .++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-------~----~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-------G----ALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-------C----CCCccccCCHHHhccCCCEEEECC
Confidence 479999999 999999998877654333345689888765421 1 11233345664 467899999764
No 255
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.36 E-value=0.032 Score=53.61 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=63.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc---CC---c-cccCCCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS---VD---Y-AVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t---~~---~-~al~~aD 107 (350)
+|||.|+|| |.+|+.++..|+.. +. +|+.+|++.++.. .+... ...++... .+ . +.++++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~~~----~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDRLG----DLVNH----PRMHFFEGDITINKEWIEYHVKKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHHHH----HhccC----CCeEEEeCCCCCCHHHHHHHHcCCC
Confidence 368999998 99999999999876 43 8999998654322 11110 11222211 12 1 2457899
Q ss_pred EEEEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 108 LCIVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 108 iVIi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+||-+++... ............|+.-...+++.+.+.. ..+|.+|.
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 9998875432 1122223344556666667777777654 34555543
No 256
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.35 E-value=0.016 Score=56.67 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
..||+|||+|.+|+.++..|+..|+ .+|+|+|.|
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 4689999999999999999999996 699999976
No 257
>PLN02858 fructose-bisphosphate aldolase
Probab=96.35 E-value=0.014 Score=66.00 Aligned_cols=65 Identities=8% Similarity=0.170 Sum_probs=50.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
..||++||.|.||..+|..|+..|. +|..+|+++++.+. +.... ..+ ..+. +..++||+||++..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~----l~~~G-----a~~--~~s~~e~a~~advVi~~l~ 69 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF--KVQAFEISTPLMEK----FCELG-----GHR--CDSPAEAAKDAAALVVVLS 69 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHcC-----Cee--cCCHHHHHhcCCEEEEEcC
Confidence 4589999999999999999999985 89999999877653 33321 122 2344 66889999999964
No 258
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.34 E-value=0.02 Score=50.96 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=31.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
..||+|+|+|.+|+.++..|+..|+ ++++|+|-+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 4699999999999999999999997 689999965
No 259
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.064 Score=49.31 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=67.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV---------- 102 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------- 102 (350)
+.+++.|+|+ |.+|..++..|+..|. +|+++++++++++....++.... ....+... ++.+.
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568999998 8999999999999885 99999999877665544443211 11122111 12222
Q ss_pred -cCCCCEEEEecCCCcCc---ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 -TAGSDLCIVTAGARQIA---GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 -l~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+...|+||.++|..... ..+ -...+..|. .+.+...+.+.+..+.+.+++++.
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 23679999998753211 111 122233343 344444444544445566666664
No 260
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.31 E-value=0.032 Score=58.79 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=77.8
Q ss_pred Cccchhhhhhcc----ccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHh
Q 018760 13 GGLDLTQTFFKP----INHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAA 86 (350)
Q Consensus 13 ~~~~~~~~~~~~----~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~ 86 (350)
+|-+|.+||.-. | .+-|.-.-++.|||.|+|| |.+|++++..|+.. +. +|+.+|++..... .+...
T Consensus 288 ~~~~~~~g~~~~~g~~~-~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~----~~~~~- 359 (660)
T PRK08125 288 QGSQLAQELGLVAGARL-NSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS----RFLGH- 359 (660)
T ss_pred CHHHHhcCCCCCCCCEe-cccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh----hhcCC-
Confidence 445666665311 1 2222234456789999998 99999999999975 54 9999998764322 11100
Q ss_pred hcCCCceEEEc--CC----c-cccCCCCEEEEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 87 AFLPRTKILAS--VD----Y-AVTAGSDLCIVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 87 ~~~~~~~v~~t--~~----~-~al~~aDiVIi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...++... +| . ++++++|+||-+++... .......+.+..|+.-...+.+.+.++. . .+|.+|.
T Consensus 360 ---~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS 432 (660)
T PRK08125 360 ---PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPST 432 (660)
T ss_pred ---CceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcc
Confidence 11222211 01 1 24679999999876432 1222344566678888888888888765 2 3444543
No 261
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.31 E-value=0.02 Score=55.28 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD 107 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD 107 (350)
...|||.|+|+ |.+|++++..|++.|. +|++++++.++......++.. .....+... ++ . +.+++.|
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE----GDRLRLFRADLQEEGSFDEAVKGCD 81 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc----CCeEEEEECCCCCHHHHHHHHcCCC
Confidence 34579999998 9999999999999985 899888876544322212211 012222211 12 1 3467899
Q ss_pred EEEEecCCC
Q 018760 108 LCIVTAGAR 116 (350)
Q Consensus 108 iVIi~~g~~ 116 (350)
+||.+++..
T Consensus 82 ~Vih~A~~~ 90 (353)
T PLN02896 82 GVFHVAASM 90 (353)
T ss_pred EEEECCccc
Confidence 999998753
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.29 E-value=0.047 Score=55.50 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCC-Cce------EE-EcCCc----
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLP-RTK------IL-ASVDY---- 100 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~-~~~------v~-~t~~~---- 100 (350)
..++.||+|+|+|.+|...+..+...|. +|+.+|+++++++ .+..+--... ... ... +. .+.++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 3457899999999999998888888885 7999999998876 3333311000 000 000 00 01121
Q ss_pred -----cccCCCCEEEEecCCCcCccccHHHHHHhhHHH-HHHHHhhhhccCCCeEEEEEcCC
Q 018760 101 -----AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSL-FKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 101 -----~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i-~~~i~~~i~~~~p~a~viv~tNP 156 (350)
+.++++|+||.|++.|.++.- .. .++..+. ..|.++++.++.+
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~ 287 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccC
Confidence 113689999999987653210 11 1333333 3578888888764
No 263
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.28 E-value=0.014 Score=55.21 Aligned_cols=76 Identities=20% Similarity=0.374 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 35 KRHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
.+..+|+|||.| .||.+++..|+..+. .|++++.... +. +..+.||+||.+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t~-------------------------~l~e~~~~ADIVIsa 209 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRST-------------------------DAKALCRQADIVVAA 209 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCCC-------------------------CHHHHHhcCCEEEEe
Confidence 345799999995 999999999999985 8999876432 33 456889999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCc
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPV 157 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~ 157 (350)
.|.+.. -..++ ..|.+++|.++ |++
T Consensus 210 vg~~~~---v~~~~-----------------ik~GaiVIDvgin~~ 235 (301)
T PRK14194 210 VGRPRL---IDADW-----------------LKPGAVVIDVGINRI 235 (301)
T ss_pred cCChhc---ccHhh-----------------ccCCcEEEEeccccc
Confidence 886531 11111 46889999887 654
No 264
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.27 E-value=0.053 Score=56.71 Aligned_cols=135 Identities=14% Similarity=0.239 Sum_probs=82.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----cccCCCCEE
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----~al~~aDiV 109 (350)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+. +.+. ..++... ++. ..+++||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~----~~~~-----g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIET----LRKF-----GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHH----HHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 4689999999999999999999886 89999999987763 3221 1233321 222 247899999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~ 188 (350)
|++...+ ..|.. ++..+++..|+..++.-+ |+.+ .+.+ +..|. +.++-- +...+.++.
T Consensus 469 vv~~~d~-----------~~n~~----i~~~ar~~~p~~~iiaRa~d~~~--~~~L-~~~Ga--d~v~~e-~~e~sl~l~ 527 (621)
T PRK03562 469 INAIDDP-----------QTSLQ----LVELVKEHFPHLQIIARARDVDH--YIRL-RQAGV--EKPERE-TFEGALKSG 527 (621)
T ss_pred EEEeCCH-----------HHHHH----HHHHHHHhCCCCeEEEEECCHHH--HHHH-HHCCC--CEEehh-hHhHHHHHH
Confidence 9995321 12333 344555667886655544 4422 2222 23343 344422 333345566
Q ss_pred HHHHHHcCCCCcceE
Q 018760 189 FLLADHLDVNAQDVQ 203 (350)
Q Consensus 189 ~~la~~l~v~p~~v~ 203 (350)
+.+-+.+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 528 RLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHcCCCHHHHH
Confidence 666778887775543
No 265
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=96.26 E-value=0.034 Score=53.77 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=45.3
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHhcCCCCeEEEEeCCccchHHHH-HHHHHHhhcCCCceEEE
Q 018760 38 TKISVIGTGNV--------------------GMAIAQTILTQDFVEELALVDAKADKLRGEM-LDLQHAAAFLPRTKILA 96 (350)
Q Consensus 38 ~KI~IIGAG~v--------------------G~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~-~dl~~~~~~~~~~~v~~ 96 (350)
|||+|-|||+= |.++|..|+..|. +|+++|+++++++... ..+.. ...++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~-----~Gi~~-- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVED-----AGVKV-- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHH-----CCCEE--
Confidence 67888888752 6778888888885 8999999887543211 11221 12233
Q ss_pred cCCc-cccCCCCEEEEecC
Q 018760 97 SVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 97 t~~~-~al~~aDiVIi~~g 114 (350)
+++. +++++||+||++..
T Consensus 72 asd~~eaa~~ADvVIlaVP 90 (342)
T PRK12557 72 VSDDAEAAKHGEIHILFTP 90 (342)
T ss_pred eCCHHHHHhCCCEEEEECC
Confidence 3344 67899999999953
No 266
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.22 E-value=0.064 Score=55.88 Aligned_cols=135 Identities=11% Similarity=0.195 Sum_probs=82.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CC---c--cccCCCCEE
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VD---Y--AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~---~--~al~~aDiV 109 (350)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+. +++. ..++. .. ++ . ..+.+||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~----~~~~-----g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNL----MRKY-----GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHH----HHhC-----CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4689999999999999999998886 89999999987663 3321 11222 21 12 1 247899999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR 188 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~ 188 (350)
|++.+.+ ..|. .++..+++++|+..++.- .||.+. +.+ +..|. +.|+-= +..-+..+.
T Consensus 469 v~~~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~--~~L-~~~Ga--~~vv~e-~~es~l~l~ 527 (601)
T PRK03659 469 VITCNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEA--HEL-LQAGV--TQFSRE-TFSSALELG 527 (601)
T ss_pred EEEeCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHH--HHH-HhCCC--CEEEcc-HHHHHHHHH
Confidence 9995421 1233 345556677888765544 455433 222 22343 344311 222234455
Q ss_pred HHHHHHcCCCCcceE
Q 018760 189 FLLADHLDVNAQDVQ 203 (350)
Q Consensus 189 ~~la~~l~v~p~~v~ 203 (350)
...-..+|++++++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 556677888887664
No 267
>PLN02583 cinnamoyl-CoA reductase
Probab=96.22 E-value=0.14 Score=48.13 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV 109 (350)
.++|+|+|| |.+|+.++..|++.|. +|++++++.+..+ ....+...........+... +| . +++.++|.|
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~-~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETE-IEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhh-HHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 458999998 9999999999999985 8998887543221 11111111100011222211 12 2 468899999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~ 144 (350)
+.+++.+........+++..|+.-...+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 117 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT 117 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 86654332111112355667777777777777665
No 268
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.1 Score=49.04 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=50.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.++|.|+|| |.+|..++..|++.|. +|+++++++++++.....+.... ....+... +|.+ .
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG---GDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467999998 9999999999999985 99999999887765554543211 11111111 1111 1
Q ss_pred cCCCCEEEEecCCC
Q 018760 103 TAGSDLCIVTAGAR 116 (350)
Q Consensus 103 l~~aDiVIi~~g~~ 116 (350)
+...|+||.++|..
T Consensus 115 ~g~id~li~~AG~~ 128 (293)
T PRK05866 115 IGGVDILINNAGRS 128 (293)
T ss_pred cCCCCEEEECCCCC
Confidence 23789999998764
No 269
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.077 Score=47.93 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------- 102 (350)
.++|.|+|+ |.+|..++..|++.|. +|++++++++++.....+++... ....+... ++.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999998 9999999999999885 89999998877765555554321 11222211 12111
Q ss_pred cCCCCEEEEecCCC
Q 018760 103 TAGSDLCIVTAGAR 116 (350)
Q Consensus 103 l~~aDiVIi~~g~~ 116 (350)
+...|+||.++|..
T Consensus 82 ~~~id~vi~~ag~~ 95 (250)
T PRK12939 82 LGGLDGLVNNAGIT 95 (250)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999998764
No 270
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.21 E-value=0.029 Score=51.20 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 34689999999999999999999997 6999999753
No 271
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.19 E-value=0.03 Score=52.45 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=82.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A 101 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~ 101 (350)
..+.|.|.|| ..+|.++|+.++..|. .++|+.+..++++.+..++....+.. +..+... +|. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 4456778899 7999999999999996 89999999999987767777654321 1111111 111 2
Q ss_pred ccCCCCEEEEecCCCcCccc----c---HHHHHH----hhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760 102 VTAGSDLCIVTAGARQIAGE----S---RLNLLQ----RNLSLFKAIIPPLVKYSPDCILLIVANPVDIL 160 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g~----~---r~~~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~ 160 (350)
.+.+.|++|+.+|..+ .+. + ....+. ..+..-+...+.|.+-+ ++.|++++...+.+
T Consensus 88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM 155 (282)
T ss_pred hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence 3578999999999876 321 1 112232 34778888899999877 78888887666553
No 272
>PRK08643 acetoin reductase; Validated
Probab=96.19 E-value=0.08 Score=48.24 Aligned_cols=113 Identities=15% Similarity=0.206 Sum_probs=65.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al 103 (350)
+++.|+|+ |.+|..++..|++.|. +|+++|+++++++....++.+.. ........ ++.+ .+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47888998 9999999999999985 89999998877765555554321 11111111 1111 12
Q ss_pred CCCCEEEEecCCCc-Ccc--ccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760 104 AGSDLCIVTAGARQ-IAG--ESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 104 ~~aDiVIi~~g~~~-~~g--~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...|+||.++|... .+- .+. ...+..|.. +.+.+.+.+.+..+++.++++|-
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 139 (256)
T PRK08643 78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATS 139 (256)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 36799999987532 111 111 122333432 34444455544444566777764
No 273
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.19 E-value=0.068 Score=52.61 Aligned_cols=112 Identities=13% Similarity=0.272 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH--HHHHHHHhhcCCCceEEEc--CCc----cccC
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE--MLDLQHAAAFLPRTKILAS--VDY----AVTA 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~--~~dl~~~~~~~~~~~v~~t--~~~----~al~ 104 (350)
+.+.+||.|+|| |.+|+.++..|+..+. +|++++++..++... ..++... .+...+... +|. +.++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE---LPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh---cCCceEEEeeCCCHHHHHHHHH
Confidence 445679999999 9999999999999885 899999987544211 1111111 112222221 122 2344
Q ss_pred ----CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 105 ----GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 105 ----~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
++|+||.+++.+..... +....|......+.+.+++..-.- +|.+|
T Consensus 132 ~~~~~~D~Vi~~aa~~~~~~~---~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS 181 (390)
T PLN02657 132 SEGDPVDVVVSCLASRTGGVK---DSWKIDYQATKNSLDAGREVGAKH-FVLLS 181 (390)
T ss_pred HhCCCCcEEEECCccCCCCCc---cchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 58999998764321111 122335555566666666654333 44444
No 274
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.18 E-value=0.042 Score=50.23 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcccc---------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAVT--------- 103 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~al--------- 103 (350)
+.++|.|+|+ |.+|+.++..|+..|. +|++++++.++++....++.... ....+... +|.+.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG---IDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3468999998 9999999999999885 89999998877664444443211 11111111 122222
Q ss_pred --CCCCEEEEecCCCcCc---ccc---HHHHHHhhHHHHHHHHhhhhcc----CCCeEEEEEcC
Q 018760 104 --AGSDLCIVTAGARQIA---GES---RLNLLQRNLSLFKAIIPPLVKY----SPDCILLIVAN 155 (350)
Q Consensus 104 --~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN 155 (350)
...|.||.++|..... ..+ -...+..|..-...+.+.+.++ .+.+.++++|.
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3579999998753211 111 1223445555444444444332 23455666654
No 275
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.17 E-value=0.022 Score=54.11 Aligned_cols=94 Identities=15% Similarity=0.236 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
-..++|+|||.|++|+.+|..+..-|. +|+.+|++... . . .... ..+. +.++.||+|+++.
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~--~V~~~~r~~~~-~----------~----~~~~-~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGM--NIYAYTRSYVN-D----------G----ISSI-YMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcc-c----------C----cccc-cCCHHHHHhhCCEEEECC
Confidence 345799999999999999987766675 89999986421 0 0 0111 1245 5688999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc--CCcch
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA--NPVDI 159 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NP~~~ 159 (350)
.... +++ .++ | .+.+....|++++||++ .++|.
T Consensus 182 p~t~---~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 182 PLTD---ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred CCCc---hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence 4221 111 111 1 23334446889999997 44444
No 276
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.17 E-value=0.0094 Score=55.75 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhc-CCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEe
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQ-DFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVT 112 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~ 112 (350)
+++||+|||+|.+|..++..|... +- -+|. ++|+++++.+. +..... .... .++++ .+.++|+|+++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-~el~aV~dr~~~~a~~----~a~~~g---~~~~--~~~~eell~~~D~Vvi~ 74 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-LTLSAVAVRDPQRHAD----FIWGLR---RPPP--VVPLDQLATHADIVVEA 74 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-eEEEEEECCCHHHHHH----HHHhcC---CCcc--cCCHHHHhcCCCEEEEC
Confidence 358999999999999999888764 21 2554 78998876543 222111 1112 23553 46789999999
Q ss_pred cC
Q 018760 113 AG 114 (350)
Q Consensus 113 ~g 114 (350)
++
T Consensus 75 tp 76 (271)
T PRK13302 75 AP 76 (271)
T ss_pred CC
Confidence 74
No 277
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.17 E-value=0.13 Score=48.68 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=61.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC 109 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV 109 (350)
.++|.|+|| |.+|++++..|++.|. +|++..++.+..+. ...+...........+... ++ . ++++++|+|
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 468999998 9999999999999985 88877766654432 1122111100012222211 12 2 346789999
Q ss_pred EEecCCCcC-ccccHHHHHHhhHHHHHHHHhhhhcc
Q 018760 110 IVTAGARQI-AGESRLNLLQRNLSLFKAIIPPLVKY 144 (350)
Q Consensus 110 Ii~~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~ 144 (350)
|.+++.... ......+++..|+.-...+.+.+.+.
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 82 FHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 999874211 11122334555777677777766654
No 278
>PRK13529 malate dehydrogenase; Provisional
Probab=96.16 E-value=0.056 Score=55.08 Aligned_cols=133 Identities=16% Similarity=0.246 Sum_probs=83.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHh----cCCC-----CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceE-EEcCCc
Q 018760 37 HTKISVIGTGNVGMAIAQTILT----QDFV-----EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKI-LASVDY 100 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~----~~~~-----~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v-~~t~~~ 100 (350)
..||++.|||+.|..+|..|+. .|+- ..++++|..- ++ +......+.+.......... ....++
T Consensus 295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L 374 (563)
T PRK13529 295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISL 374 (563)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCH
Confidence 4699999999999999988776 4653 5899999853 22 22222222221100000000 011344
Q ss_pred -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCc
Q 018760 101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNR 174 (350)
Q Consensus 101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~r 174 (350)
++++++ |++|=+.+.+ |- +-+++.+.|.++|++.+|.-.|||.. +..+-+++++. -+.
T Consensus 375 ~e~v~~~kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~--Gra 438 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQP---GA-----------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTD--GRA 438 (563)
T ss_pred HHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhc--CCE
Confidence 678888 9888765433 21 12456778888899999999999985 45666777652 236
Q ss_pred EeeecCCccHH
Q 018760 175 VIGSGTNLDSS 185 (350)
Q Consensus 175 viG~g~~ld~~ 185 (350)
+|++|+-.+..
T Consensus 439 i~AtGspf~pv 449 (563)
T PRK13529 439 LVATGSPFAPV 449 (563)
T ss_pred EEEECCCCCCe
Confidence 88998866643
No 279
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.16 E-value=0.022 Score=53.43 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred EEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCEEEEecCCCc
Q 018760 41 SVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 41 ~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDiVIi~~g~~~ 117 (350)
.|+|+ |.+|++++..|++.+...+|+.+|+.+.... ..++...... .....+.-..+. ++++++|+||-++....
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 37888 9999999999999986569999998764322 1112211100 001122211123 57999999999975322
Q ss_pred Ccc-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 118 IAG-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 118 ~~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
-.+ .....+..-|+.=-+.+.+...+..-+ -+++|.-+
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~ 117 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSI 117 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCc
Confidence 222 345667777888888888888876544 34444333
No 280
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.16 E-value=0.035 Score=54.83 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
....+|+|+|+|.+|..++..+...|. +|+.+|+++.+..... . .. ..+. +-.++++++|+||.+.|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~---~--~G----~~v~--~leeal~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA---M--DG----FRVM--TMEEAAKIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH---h--cC----CEeC--CHHHHHhcCCEEEECCC
Confidence 345699999999999999999888775 8999999987543111 1 11 1222 11256889999998865
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
.+ .++.. +.+....+.+++++++-+
T Consensus 260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 NK---------------DVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence 22 22221 123334577889988753
No 281
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.049 Score=48.89 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=36.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|| |.+|..++..|+..+. +|++++++++++.....++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHh
Confidence 367999998 9999999999998885 89999999877664444443
No 282
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.14 E-value=0.018 Score=58.94 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=59.7
Q ss_pred CCCccchhhhhhccccCCC-C--CCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh
Q 018760 11 GPGGLDLTQTFFKPINHAA-P--PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA 87 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~ 87 (350)
.-||.||...+.+.+.... . +....+..++.|+|+|.+|+++++.|++.|. +|++++++.++++..+..+.
T Consensus 350 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~--~V~i~nR~~e~a~~la~~l~---- 423 (529)
T PLN02520 350 NTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGA--RVVIANRTYERAKELADAVG---- 423 (529)
T ss_pred cccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC----
Confidence 3578888888764322110 0 0112334689999999999999999999996 89999999877764433221
Q ss_pred cCCCceEEEcCCcc-c-cCCCCEEEEecCCC
Q 018760 88 FLPRTKILASVDYA-V-TAGSDLCIVTAGAR 116 (350)
Q Consensus 88 ~~~~~~v~~t~~~~-a-l~~aDiVIi~~g~~ 116 (350)
.++....+.+ . ..++|+||.+....
T Consensus 424 ----~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 424 ----GQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred ----CceeeHhHhhhhccccCeEEEecccCC
Confidence 1122112222 1 24678888876443
No 283
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.11 E-value=0.0063 Score=54.67 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=65.4
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH----HHHHHHHhhcC----------CCceEEEcCCc-cc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGE----MLDLQHAAAFL----------PRTKILASVDY-AV 102 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~----~~dl~~~~~~~----------~~~~v~~t~~~-~a 102 (350)
.||+|+|.|-+|+..|..+++.|+ +|.||||.++.+.-. ..++.+..... ....|..|++. |.
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred cceeEeecccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 599999999999999999999997 999999988655422 23333222110 11234445555 45
Q ss_pred cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHH
Q 018760 103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILT 161 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~ 161 (350)
.++|=.+=.|+ .+.....+++.+++.+. .|. .|..|..+.++.
T Consensus 82 vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~--tIlaSSTSt~mp 125 (313)
T KOG2305|consen 82 VKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT--TILASSTSTFMP 125 (313)
T ss_pred HhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc--eEEeccccccCh
Confidence 66664433332 23455666777777776 455 344555554443
No 284
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.09 E-value=0.061 Score=49.10 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=67.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
.+|.|+|+ |.+|..++..|++.+. +|+++|++.++++.....+...... ........ ++.++ +
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGE-GMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCC-ceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999 8999999999999985 8999999887665544444332110 01111111 12111 2
Q ss_pred CCCCEEEEecCCCcCc---cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 104 AGSDLCIVTAGARQIA---GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
...|+||.++|.+... ..+..+ .+..|+ .+.+.+.+.+.+..+++.++.+|..
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 80 GRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 3579999998764321 112222 223333 2455666666655545667776653
No 285
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.08 E-value=0.033 Score=55.27 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
...+|+|+|+|.+|..++..+...|. +|+++|+++.++....+ .. .++. +. ++++++|+||.+.|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~-----~G----~~v~---~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM-----DG----FRVM---TMEEAAELGDIFVTATG 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh-----cC----CEec---CHHHHHhCCCEEEECCC
Confidence 45699999999999999999998886 89999999876532111 11 1221 23 56889999999865
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
.+ .++. ...+....+.+++++++-+
T Consensus 277 ~~---------------~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 277 NK---------------DVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred CH---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence 32 2222 1223334677888888743
No 286
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.07 Score=49.30 Aligned_cols=44 Identities=32% Similarity=0.383 Sum_probs=36.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+++.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~ 45 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADAR 45 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 37899998 9999999999999885 79999998877665444554
No 287
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.07 E-value=0.023 Score=58.11 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
-..++|+|||.|.+|+.+|..+...|. +|+.+|.....-. . .+ . . +....+. +.+++||+|+++.
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~---~~-~----g--~~~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPER--A---EQ-L----G--VELVDDLDELLARADFITVHT 201 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--H---Hh-c----C--CEEcCCHHHHHhhCCEEEEcc
Confidence 345689999999999999999987775 8999998532111 1 11 1 1 1222345 5689999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
.... + +..++- .+.+....|.+++|+++--
T Consensus 202 Plt~---~--------T~~li~--~~~l~~mk~ga~lIN~aRG 231 (525)
T TIGR01327 202 PLTP---E--------TRGLIG--AEELAKMKKGVIIVNCARG 231 (525)
T ss_pred CCCh---h--------hccCcC--HHHHhcCCCCeEEEEcCCC
Confidence 4221 1 111111 1334444688999999744
No 288
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.015 Score=53.25 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE 78 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~ 78 (350)
+++.|+|| |.+|..++..|++.|. +|+++|++++.++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAAL 41 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH
Confidence 46999999 9999999999999985 899999988766543
No 289
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.05 E-value=0.016 Score=56.50 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCC
Q 018760 33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAG 105 (350)
Q Consensus 33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~ 105 (350)
+..+.|||.|+|+ |.+|+.++..|...|. +|+.+|+...... .... . ...+... ++ . +.+++
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~~~------~~~~-~--~~~~~~~Dl~d~~~~~~~~~~ 85 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNEHM------SEDM-F--CHEFHLVDLRVMENCLKVTKG 85 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccccc------cccc-c--cceEEECCCCCHHHHHHHHhC
Confidence 3446689999999 9999999999999885 8999998543110 0000 0 0111111 11 1 23578
Q ss_pred CCEEEEecCCCcCcc---ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 106 SDLCIVTAGARQIAG---ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 106 aDiVIi~~g~~~~~g---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+|+||.+++.....+ .........|+.....+++.+.+...+. +|.+|
T Consensus 86 ~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S 136 (370)
T PLN02695 86 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS 136 (370)
T ss_pred CCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence 999999975321000 1122345568888888888887765544 44444
No 290
>PRK07411 hypothetical protein; Validated
Probab=96.03 E-value=0.028 Score=55.40 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|||+|.+|+.++..|+..|+ .+|+|+|-|
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D 71 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFD 71 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 35699999999999999999999997 699999975
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.02 E-value=0.077 Score=50.98 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc---cccCC-CCEE
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY---AVTAG-SDLC 109 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~---~al~~-aDiV 109 (350)
-++..+|+|+|+|.+|...++.....+ -+|+.+|+++++++ .+++|- ...-+. +++. +++++ +|++
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e-~a~~lG------Ad~~i~-~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE-LAKKLG------ADHVIN-SSDSDALEAVKEIADAI 233 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH-HHHHhC------CcEEEE-cCCchhhHHhHhhCcEE
Confidence 344579999999988877666666567 49999999999876 233331 111222 2222 33333 9999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
|.+++ +. .+-..++-..+++.++.+.+|.
T Consensus 234 i~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 234 IDTVG-PA------------------TLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EECCC-hh------------------hHHHHHHHHhcCCEEEEECCCC
Confidence 99986 31 1112223335789999999994
No 292
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.00 E-value=0.034 Score=55.77 Aligned_cols=92 Identities=12% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
.....+|+|+|.|.+|..+|..+...|. +|+.+|+++.+.....+ + ..++. +. +.++.||+||.+
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~---~------G~~~~---~leell~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM---E------GYQVV---TLEDVVETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh---c------Cceec---cHHHHHhcCCEEEEC
Confidence 3455699999999999999999988886 89999998765421111 1 11221 34 568999999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
.|.+. ++. .+.+....|.+++++++-.
T Consensus 317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCccc---------------ccC--HHHHhccCCCcEEEEcCCC
Confidence 65321 111 1234445789999999855
No 293
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.11 Score=46.94 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.+++.|+|+ |.+|..++..|++.|. +|+++|++++.++....++.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIV 51 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3468999999 9999999999999985 89999998766554443443
No 294
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.00 E-value=0.025 Score=55.34 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
.-..++|+|||.|+||+.++..+..-|. +|..+|..... . . . . .. ..+. +.++.||+|++.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~--~V~~~dp~~~~-~-------~-~----~--~~-~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI--KTLLCDPPRAD-R-------G-D----E--GD-FRSLDELVQEADILTFH 174 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCcccc-c-------c-c----c--cc-cCCHHHHHhhCCEEEEe
Confidence 3456799999999999999999988786 99999964211 0 0 0 0 11 1245 457899999987
Q ss_pred cC
Q 018760 113 AG 114 (350)
Q Consensus 113 ~g 114 (350)
..
T Consensus 175 ~P 176 (378)
T PRK15438 175 TP 176 (378)
T ss_pred CC
Confidence 54
No 295
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=95.99 E-value=0.071 Score=54.75 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=61.5
Q ss_pred hhhccccCCCCCCCCC-CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc--chHHHHHHHHH-HhhcCCCceEE
Q 018760 20 TFFKPINHAAPPSPTK-RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD--KLRGEMLDLQH-AAAFLPRTKIL 95 (350)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~--~l~~~~~dl~~-~~~~~~~~~v~ 95 (350)
-|+..|.+++.+.... +..||+|+|.|.+|+.++..|+..|+ .++..+|.|.. .+..+ .++.+ +..+.+..++.
T Consensus 111 ~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRI-gEl~e~A~~~n~~v~v~ 188 (637)
T TIGR03693 111 EFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRI-HELAEIAEETDDALLVQ 188 (637)
T ss_pred HHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-CcEEEEeccccchhhhHH-HHHHHHHHHhCCCCceE
Confidence 3777777888766555 45699999999999999999999997 57878866543 22211 12221 11122333222
Q ss_pred E-----cCCc-cccCCCCEEEEecCCC
Q 018760 96 A-----SVDY-AVTAGSDLCIVTAGAR 116 (350)
Q Consensus 96 ~-----t~~~-~al~~aDiVIi~~g~~ 116 (350)
. +.+. +.+++.|+||..+..+
T Consensus 189 ~i~~~~~~dl~ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 189 EIDFAEDQHLHEAFEPADWVLYVSDNG 215 (637)
T ss_pred eccCCcchhHHHhhcCCcEEEEECCCC
Confidence 1 1123 5689999999997543
No 296
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.97 E-value=0.03 Score=55.16 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||.|||+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 35699999999999999999999997 689999965
No 297
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.96 E-value=0.031 Score=51.10 Aligned_cols=33 Identities=18% Similarity=0.556 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
||.|+|+|.+|+.++..|+..|+ ++++++|.|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999997 6999999753
No 298
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.95 E-value=0.015 Score=58.05 Aligned_cols=67 Identities=22% Similarity=0.476 Sum_probs=47.4
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cc-cCCCCEEE
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AV-TAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~a-l~~aDiVI 110 (350)
|||.|+|+|.+|..++..|...+. +++++|.++++++. +.... ..++... ++ . ++ +.++|.||
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~----~~~~~----~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN--DVTVIDTDEERLRR----LQDRL----DVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEECCHHHHHH----HHhhc----CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 689999999999999999998885 89999999987653 22211 1122211 11 1 23 78999999
Q ss_pred EecC
Q 018760 111 VTAG 114 (350)
Q Consensus 111 i~~g 114 (350)
++.+
T Consensus 71 ~~~~ 74 (453)
T PRK09496 71 AVTD 74 (453)
T ss_pred EecC
Confidence 9853
No 299
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.082 Score=48.21 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
+.+++.|+|| |.+|+.++..|+++|. +|++++++++.++.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~ 50 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAA 50 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHH
Confidence 4579999999 9999999999999985 89999998765553
No 300
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.94 E-value=0.025 Score=57.93 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
-..++|+|||.|.+|+.+|..+...|. +|+.||.....-. . .. . .... . +. +.++.||+|+++.
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~---~~-~----g~~~--~-~l~ell~~aDiV~l~l 202 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPER--A---AQ-L----GVEL--V-SLDELLARADFITLHT 202 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--H---Hh-c----CCEE--E-cHHHHHhhCCEEEEcc
Confidence 345799999999999999999988776 9999998643111 1 11 1 1122 2 45 5689999999996
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG 179 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g 179 (350)
.... + +..++. .+.+....|++++|+++-..=+-...+.+. +...++-|.+
T Consensus 203 P~t~---~--------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gAa 253 (526)
T PRK13581 203 PLTP---E--------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEA--LKSGKVAGAA 253 (526)
T ss_pred CCCh---H--------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHH--HhcCCeeEEE
Confidence 4321 1 111110 123344468899999985433333343333 2334665553
No 301
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.94 E-value=0.016 Score=63.34 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCC------------eEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc--
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVE------------ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-- 101 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~------------ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-- 101 (350)
++.||+|||||.||...+..|+..+-.. .|++.|++.++++..+..+.... ...+- .+|.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~----~v~lD-v~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE----AVQLD-VSDSESL 642 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc----eEEee-cCCHHHH
Confidence 4669999999999999999998764221 48899999876664333221100 11221 23432
Q ss_pred --ccCCCCEEEEecCC
Q 018760 102 --VTAGSDLCIVTAGA 115 (350)
Q Consensus 102 --al~~aDiVIi~~g~ 115 (350)
.++++|+||++.+.
T Consensus 643 ~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 643 LKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHhhcCCCEEEECCCc
Confidence 34789999999754
No 302
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.93 E-value=0.013 Score=46.89 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=55.6
Q ss_pred EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCEEEEe
Q 018760 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDLCIVT 112 (350)
Q Consensus 40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDiVIi~ 112 (350)
|.|+|.|.+|..++..|...+ .+++++|.++++.+. +.... ..+... ++ + ..+++||.||++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~----~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEE----LREEG-----VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHH----HHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHH----HHhcc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence 679999999999999999966 389999999986553 33221 123221 12 1 247899999988
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.+.. ..|. .++..+++..|+..++...
T Consensus 70 ~~~d-----------~~n~----~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 70 TDDD-----------EENL----LIALLARELNPDIRIIARV 96 (116)
T ss_dssp SSSH-----------HHHH----HHHHHHHHHTTTSEEEEEE
T ss_pred cCCH-----------HHHH----HHHHHHHHHCCCCeEEEEE
Confidence 5311 1232 3344556667766555444
No 303
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.93 E-value=0.18 Score=45.83 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=37.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|+ |.+|..++..|++.|. +|++.|+++++++.....+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3468999998 9999999999999985 89999999877665444444
No 304
>PRK07069 short chain dehydrogenase; Validated
Probab=95.93 E-value=0.13 Score=46.46 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=65.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC-ccchHHHHHHHHHHhhcCCCce-EEE-cCCcc-----------cc
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAK-ADKLRGEMLDLQHAAAFLPRTK-ILA-SVDYA-----------VT 103 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~-~~~l~~~~~dl~~~~~~~~~~~-v~~-t~~~~-----------al 103 (350)
||.|+|+ |.+|..++..|+..|. +|++.+++ +++++....++..... ..... +.. -++.+ .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHG-EGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCC-CceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5889998 9999999999999885 89999998 6655544444432210 00001 111 01211 13
Q ss_pred CCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760 104 AGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...|+||.++|..... ..+. ...+..|+. ..+.+.+.+.+... +.++++|.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 4679999998754311 1111 223445555 66777777766543 44555553
No 305
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.93 E-value=0.078 Score=50.70 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
...+.|+|| |.+|..++..|+..|. +|+++++++++++....++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence 457888899 8999999999999986 899999999988876666654
No 306
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.91 E-value=0.051 Score=53.86 Aligned_cols=116 Identities=14% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
+-..++|+|||.|++|+.+|..+..-|. +|..+|..+... . . .+....+. +.++.||+|++.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~----------~----~-~~~~~~~l~ell~~sDiVslh 210 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLP----------L----G-NARQVGSLEELLAQSDVVSLH 210 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCcccc----------c----C-CceecCCHHHHHhhCCEEEEc
Confidence 3456799999999999999998887775 999999753210 0 0 11222355 568999999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN 181 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ 181 (350)
.... + +++ .++ |. +.+....|++++||++--.=+-...+.+. +..+++-|.+..
T Consensus 211 ~Plt--~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaalD 264 (409)
T PRK11790 211 VPET--P-STK-NMI--GA-------EELALMKPGAILINASRGTVVDIDALADA--LKSGHLAGAAID 264 (409)
T ss_pred CCCC--h-HHh-hcc--CH-------HHHhcCCCCeEEEECCCCcccCHHHHHHH--HHcCCceEEEEc
Confidence 5321 1 111 111 21 23344468899999984333333333333 233466666443
No 307
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.12 Score=47.11 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.+++.|+|+ |.+|..++..|+..|. +|++.++++++++....++.... ........ ++.+ .
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457889998 8999999999999985 89999999887765555554321 11111111 1211 1
Q ss_pred cCCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760 103 TAGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+...|++|.++|.... + ..+.. ..+..| ..+.+.+.+.+.+....+.+++++
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 2478999999875421 1 11111 122333 334455555555444345566554
No 308
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.91 E-value=0.027 Score=52.97 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=50.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t 97 (350)
..||.|+|+|.+|..+|..|+..|+ ++|+|+|-+. .|++.....|+.. .+..++...
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL---Np~V~V~~~ 94 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL---NPYVPVTVS 94 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH---CCCCEEEEE
Confidence 4689999999999999999999997 6999999753 1222222223322 245555543
Q ss_pred CC---ccccCCCCEEEEec
Q 018760 98 VD---YAVTAGSDLCIVTA 113 (350)
Q Consensus 98 ~~---~~al~~aDiVIi~~ 113 (350)
+. .+.+.+.|+||.+.
T Consensus 95 ~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 95 TGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred eccCCHHHHhcCCEEEEec
Confidence 32 35689999998884
No 309
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.90 E-value=0.13 Score=46.75 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=36.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
++|.|+|+ |.+|..++..|+..|. +|+++++++++++....++.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 58999998 9999999999999885 89999999887765554554
No 310
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=95.89 E-value=0.061 Score=50.67 Aligned_cols=115 Identities=21% Similarity=0.358 Sum_probs=71.8
Q ss_pred eEE-EEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---c-CC--c----cccCCC
Q 018760 39 KIS-VIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---S-VD--Y----AVTAGS 106 (350)
Q Consensus 39 KI~-IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t-~~--~----~al~~a 106 (350)
+.+ |.|| ..+|..+|..|+.+|+ +|+|+-++++||++.+.++.+.... ..++.. + .+ | +.+.+-
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~--nvvLIsRt~~KL~~v~kEI~~~~~v--ev~~i~~Dft~~~~~ye~i~~~l~~~ 125 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGF--NVVLISRTQEKLEAVAKEIEEKYKV--EVRIIAIDFTKGDEVYEKLLEKLAGL 125 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHHhCc--EEEEEEEecCCCchhHHHHHHHhcCC
Confidence 544 5588 7999999999999998 8999999999999999999876531 222221 1 11 2 234555
Q ss_pred C--EEEEecCCCcC-ccc----cH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760 107 D--LCIVTAGARQI-AGE----SR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANPVD 158 (350)
Q Consensus 107 D--iVIi~~g~~~~-~g~----~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~~ 158 (350)
| ++|+.+|+... |.. +. .+.+.-| ...-+-+.+.|.+ ++.+.|++.+--.+
T Consensus 126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~-r~~G~IvnigS~ag 190 (312)
T KOG1014|consen 126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE-RKKGIIVNIGSFAG 190 (312)
T ss_pred ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc-CCCceEEEeccccc
Confidence 4 56667776442 210 11 1111111 2344556666666 67788888864433
No 311
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.068 Score=49.29 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=65.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-------c-cccCCCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-------Y-AVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-------~-~al~~aD 107 (350)
.++|.|+|| |.+|..++..|+..|. +|++.++++++++....++.....+ ..++.-..+ . +...+.|
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~D~~~~~~~~~~~~~~~~~~~~id 80 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGG--PLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEE--EccCCCHHHHHHHHHHHHHHcCCCC
Confidence 458999999 9999999999999885 8999999988776443333211100 011110000 0 1135679
Q ss_pred EEEEecCCCcCc---ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760 108 LCIVTAGARQIA---GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 108 iVIi~~g~~~~~---g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
++|.++|..... ..+ -...+.-|. ...+.+.+.+.+.. .+.++++|-
T Consensus 81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 137 (273)
T PRK07825 81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS 137 (273)
T ss_pred EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 999998864311 111 122233343 34555555555533 345666653
No 312
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.059 Score=49.30 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEML 80 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~ 80 (350)
++|.|+|+ |.+|..++..|++.|. +|+++|+++++++....
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 58999998 9999999999999985 89999999877654333
No 313
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.21 Score=45.43 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=65.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
+++.|+|+ |.+|..++..|++.|. .|+++|+++++++....++.... ....+... ++.+. +
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 47889998 8999999999999885 89999999877665544444221 11111111 12111 2
Q ss_pred CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760 104 AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
...|+||.++|.... + ..+. ...+..| ..+.+.+.+.+.+....+.++++|
T Consensus 77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 467999998874321 1 1222 1223333 344555555554444456677776
No 314
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.86 E-value=0.085 Score=47.67 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|| |.+|+.++..|++.+. +|+++|+++++......++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 48 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIR 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHH
Confidence 468999998 9999999999999985 89999998876655444444
No 315
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.85 E-value=0.094 Score=55.43 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 28 AAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 28 ~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
++++....+.+++.|+|+ |.+|..++..|++.|. +|+++|++.++++....++.
T Consensus 405 ~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 405 RMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred cCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 444333334567899998 9999999999999985 89999999877765444444
No 316
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.83 E-value=0.05 Score=51.93 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV 111 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi 111 (350)
...+..+|+|||.|++|.++|..|...|+ +|+.+|.... .. +..... ..++ . +. ++++.||+|++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~--~ViV~~r~~~-s~----~~A~~~----G~~v--~-sl~Eaak~ADVV~l 77 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV--EVVVGVRPGK-SF----EVAKAD----GFEV--M-SVSEAVRTAQVVQM 77 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC--EEEEEECcch-hh----HHHHHc----CCEE--C-CHHHHHhcCCEEEE
Confidence 34456799999999999999999999897 8999986422 11 122111 1222 2 44 67999999999
Q ss_pred ecC
Q 018760 112 TAG 114 (350)
Q Consensus 112 ~~g 114 (350)
+..
T Consensus 78 lLP 80 (335)
T PRK13403 78 LLP 80 (335)
T ss_pred eCC
Confidence 964
No 317
>PRK06196 oxidoreductase; Provisional
Probab=95.83 E-value=0.057 Score=51.20 Aligned_cols=114 Identities=11% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--------cccCCCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--------AVTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--------~al~~aD 107 (350)
.++|.|+|| |.+|..++..|+..|. +|++.++++++++....++.....+ ..++.-..+. +.....|
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~--~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVV--MLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEE--EccCCCHHHHHHHHHHHHhcCCCCC
Confidence 457999999 8999999999999985 8999999987765444344321100 1111100001 1124689
Q ss_pred EEEEecCCCcCcc---ccH-HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 108 LCIVTAGARQIAG---ESR-LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 108 iVIi~~g~~~~~g---~~r-~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+||.++|....+. .+. ...+..| ..+.+.+.+.+.+.. .+.+|++|-
T Consensus 102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 9999988542211 111 1223333 344666666666543 355666653
No 318
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.82 E-value=0.035 Score=47.67 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=43.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
..++++|+|.|.+|+.+|..|...|. .|..+|+|+-++ ++-.+. ..++. +-.++++.+|++|.+.|.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga--~V~V~e~DPi~a------lqA~~d---Gf~v~--~~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA--RVTVTEIDPIRA------LQAAMD---GFEVM--TLEEALRDADIFVTATGN 88 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHH------HHHHHT---T-EEE---HHHHTTT-SEEEE-SSS
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC--EEEEEECChHHH------HHhhhc---CcEec--CHHHHHhhCCEEEECCCC
Confidence 34589999999999999999999995 999999999543 222211 23443 123689999999988664
No 319
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.12 Score=47.03 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|+ |.+|+.++..|+..+. +|+++++++++++....++.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIE 54 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3468999998 9999999999999885 89999999887765444443
No 320
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.18 Score=46.52 Aligned_cols=113 Identities=9% Similarity=0.176 Sum_probs=67.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc---c-------cC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA---V-------TA 104 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~---a-------l~ 104 (350)
+.+.|+|+ |.+|..++..|++.|. +|+++|+++++++....++..... ........ +|.+ + +.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSESN--VDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46788898 8999999999999995 899999998877665555543211 11111111 1211 1 13
Q ss_pred CCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 105 GSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
..|++|.++|.+... ..+..+ .+.-| ....+.+.+.|.+.. .+.||++|-
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS 144 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS 144 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 579999998764321 112111 12223 445677777776543 355666654
No 321
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.81 E-value=0.036 Score=50.45 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=33.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
|+|.|+|| |.+|..++..|+..|. +|+++++++++++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHH
Confidence 68999998 9999999999999885 89999999876654
No 322
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.067 Score=54.01 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=49.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~ 115 (350)
..+|.|||+|.+|..+|..|...|. +|+++|.+++ ........+... ..++....+.+...++|+||++.|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----gv~~~~~~~~~~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL-----GATVRLGPGPTLPEDTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc-----CCEEEECCCccccCCCCEEEECCCc
Confidence 4589999999999999999998886 8999997653 222112223221 2344432222345679999999887
Q ss_pred Cc
Q 018760 116 RQ 117 (350)
Q Consensus 116 ~~ 117 (350)
+.
T Consensus 89 ~~ 90 (480)
T PRK01438 89 RP 90 (480)
T ss_pred CC
Confidence 53
No 323
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.80 E-value=0.056 Score=48.96 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEE
Q 018760 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCI 110 (350)
Q Consensus 33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVI 110 (350)
...+.++|.|||+|.|+..=+..|+..+. +|+++-..-. + ...++... ...++.. .++ ++++++++||
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA--~VtVVap~i~--~-el~~l~~~----~~i~~~~-r~~~~~dl~g~~LVi 90 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGC--YVYILSKKFS--K-EFLDLKKY----GNLKLIK-GNYDKEFIKDKHLIV 90 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCCC--H-HHHHHHhC----CCEEEEe-CCCChHHhCCCcEEE
Confidence 34456799999999999998999999884 8888865421 1 11122221 1233332 244 5699999999
Q ss_pred EecC
Q 018760 111 VTAG 114 (350)
Q Consensus 111 i~~g 114 (350)
.+..
T Consensus 91 aATd 94 (223)
T PRK05562 91 IATD 94 (223)
T ss_pred ECCC
Confidence 9853
No 324
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.13 Score=46.82 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=37.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|| |.+|..++..|++.|. +|+++++++++++....++.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIR 52 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3468999999 8999999999999885 89999999877765554554
No 325
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.79 E-value=0.041 Score=52.48 Aligned_cols=32 Identities=25% Similarity=0.650 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
||.|||+|.+|+.++..|+..|+ ++|+|+|.|
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCC
Confidence 68999999999999999999997 799999965
No 326
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.79 E-value=0.23 Score=44.66 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~ 83 (350)
+++|.|+|+ |.+|..++..|++.+. ++++. ++++++++.....+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~ 51 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIK 51 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 358999998 9999999999998885 78887 998876654444443
No 327
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.037 Score=49.51 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=35.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
.++|.|+|+ |.+|..++..|++.|. +|+++++++++......++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 51 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGV 51 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHH
Confidence 468999998 9999999999999985 8999999887655433333
No 328
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.057 Score=49.52 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=57.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEE
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLC 109 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiV 109 (350)
+.+++.|+|| |.+|..++..|+..|. +|++++++++ .++. ..+.. . ....... ++. +.+...|++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~----~~~~~-~-~~~~~D~-~~~~~~~~~~~~iDil 83 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES----NDESP-N-EWIKWEC-GKEESLDKQLASLDVL 83 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh----hccCC-C-eEEEeeC-CCHHHHHHhcCCCCEE
Confidence 3457899999 8999999999999985 8999998762 2210 01100 0 0011111 122 246679999
Q ss_pred EEecCCCcCccccH---HHHHHhh----HHHHHHHHhhhhc
Q 018760 110 IVTAGARQIAGESR---LNLLQRN----LSLFKAIIPPLVK 143 (350)
Q Consensus 110 Ii~~g~~~~~g~~r---~~~~~~n----~~i~~~i~~~i~~ 143 (350)
|.++|.......+. .+.+.-| ..+.+.+.+.+.+
T Consensus 84 VnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 84 ILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred EECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99998632211222 2233444 3455556666644
No 329
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.77 E-value=0.14 Score=45.93 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|| |.+|..++..|++.|. +|+++++++++++....++.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELR 50 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHH
Confidence 3468999999 9999999999999886 79999999877664444444
No 330
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.18 Score=46.49 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=65.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
++|.|+|+ |.+|..++..|++.|. +|++.+++.++++....++.... ....+... ++.+. .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG---GDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47899999 9999999999999985 89999998877765555554321 11111111 11111 2
Q ss_pred CCCCEEEEecCCCcC---ccccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760 104 AGSDLCIVTAGARQI---AGESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~---~g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
...|+||.++|.... ...+. ...+.-| ..+.+.+.+.+.+... +.++++|
T Consensus 76 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vs 135 (270)
T PRK05650 76 GGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIA 135 (270)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence 368999999875421 11111 1123344 3344555555555433 4455555
No 331
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.76 E-value=0.039 Score=52.14 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
||.|+|+|.+|+.++..|+..|+ .+|+|+|-+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 79999999999999999999997 689999954
No 332
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.035 Score=52.32 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cccCCCCEEE
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AVTAGSDLCI 110 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~al~~aDiVI 110 (350)
..++-||+|||+|-+|..-|...+.-+ .+|.++|+|.+|+.. +.+.. ..+.....++. . ++++.+|+||
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~----ldd~f--~~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQ----LDDLF--GGRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhh----hhHhh--CceeEEEEcCHHHHHHHhhhccEEE
Confidence 567789999999999999887766666 499999999998862 33332 22334443433 3 5799999999
Q ss_pred EecCCC
Q 018760 111 VTAGAR 116 (350)
Q Consensus 111 i~~g~~ 116 (350)
-++-.|
T Consensus 237 gaVLIp 242 (371)
T COG0686 237 GAVLIP 242 (371)
T ss_pred EEEEec
Confidence 986443
No 333
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.74 E-value=0.23 Score=46.32 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=43.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEec
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~ 113 (350)
+||+|+|+ |.||..++..+....-..=+.++|+ ++++.. .++....... ...+..++|++++ .++|+||.+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~---~~~~~~~~~~-~~gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQG---TDAGELAGIG-KVGVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccC---CCHHHhcCcC-cCCceeeCCHHHhcCCCCEEEECC
Confidence 79999995 9999999998887643334556884 333321 1222221111 1124445577554 4689999985
No 334
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.15 Score=49.08 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=51.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------- 102 (350)
.++|.|+|| |.+|..++..|+..|. +|+++++++++++....++.... ....+... +|.++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 357899999 8999999999999995 89999999988876555554321 11111111 12111
Q ss_pred cCCCCEEEEecCCC
Q 018760 103 TAGSDLCIVTAGAR 116 (350)
Q Consensus 103 l~~aDiVIi~~g~~ 116 (350)
+...|++|.++|..
T Consensus 82 ~g~iD~lVnnAG~~ 95 (330)
T PRK06139 82 GGRIDVWVNNVGVG 95 (330)
T ss_pred cCCCCEEEECCCcC
Confidence 24679999998864
No 335
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.72 E-value=0.025 Score=49.01 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=43.2
Q ss_pred CCCCeEEEEcCChh-HHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 35 KRHTKISVIGTGNV-GMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGAG~v-G~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
-+..||.|||+|.+ |..++..|...+. +|++++++.+ +. +.+++||+||.+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~~-------------------------~l~~~l~~aDiVIsa 94 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKTK-------------------------NLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCch-------------------------hHHHHHhhCCEEEEc
Confidence 44579999999985 8889999998886 7999997531 22 457889999999
Q ss_pred cCCC
Q 018760 113 AGAR 116 (350)
Q Consensus 113 ~g~~ 116 (350)
.+.|
T Consensus 95 t~~~ 98 (168)
T cd01080 95 VGKP 98 (168)
T ss_pred CCCC
Confidence 7765
No 336
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.72 E-value=0.05 Score=52.23 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=59.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g 114 (350)
..++|.|||+|.+|+.++..+..-|. +|..||....+-.. -.+ .+....+.+ -++.||||++...
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm--~v~~~d~~~~~~~~----~~~--------~~~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM--KVIGYDPYSPRERA----GVD--------GVVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCCchhhh----ccc--------cceecccHHHHHhhCCEEEEcCC
Confidence 35799999999999999999999897 99999994322110 000 122123454 5899999999854
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
... ++|. ++ | ++.+.+..|.+++||++--.
T Consensus 207 lT~---eT~g-~i--~-------~~~~a~MK~gailIN~aRG~ 236 (324)
T COG0111 207 LTP---ETRG-LI--N-------AEELAKMKPGAILINAARGG 236 (324)
T ss_pred CCc---chhc-cc--C-------HHHHhhCCCCeEEEECCCcc
Confidence 221 1110 11 1 12233335788999998543
No 337
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.70 E-value=0.21 Score=44.93 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.++|.|+|| |.+|..++..|++.|. +|++++++++++......+.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVE 51 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3468999998 9999999999999985 89999999776654444443
No 338
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.091 Score=47.56 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
+.+++.|+|+ |.+|+.++..|++.|. +|++++++.+.++....++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHH
Confidence 4468999999 9999999999999885 8999999877665433333
No 339
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.70 E-value=0.047 Score=50.21 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCC-----C----CeEEEEeCC
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDF-----V----EELALVDAK 71 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~-----~----~ev~L~D~~ 71 (350)
.++.||.|||+|.+|+.++..|+..|+ . .+|+|+|-|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 456799999999999999999998752 1 189999975
No 340
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.70 E-value=0.041 Score=55.96 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=83.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHh----cCCC-----CeEEEEeCCc----cc---hHHHHHHHHHHhhcCCCceEEEcCCc
Q 018760 37 HTKISVIGTGNVGMAIAQTILT----QDFV-----EELALVDAKA----DK---LRGEMLDLQHAAAFLPRTKILASVDY 100 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~----~~~~-----~ev~L~D~~~----~~---l~~~~~dl~~~~~~~~~~~v~~t~~~ 100 (350)
..||++.|||+.|..+|..|+. .|+- ..++++|..- ++ +......+.+.. ....-....+.
T Consensus 297 d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~~~~~~L 373 (559)
T PTZ00317 297 EQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTD---ISAEDSSLKTL 373 (559)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccc---cccccccCCCH
Confidence 4689999999999999987764 5652 5899999753 22 221222222211 00110002355
Q ss_pred -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc---chHHHHHHHHhCCCCCc
Q 018760 101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV---DILTYVAWKLSGLPSNR 174 (350)
Q Consensus 101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---~~~~~~~~~~sg~~~~r 174 (350)
++++++ |++|=+.+.+ |- +-+++.+.|.++|+..+|.-.|||. ++..+-+++++. -+-
T Consensus 374 ~e~v~~~KPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~--Gra 437 (559)
T PTZ00317 374 EDVVRFVKPTALLGLSGVG---GV-----------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTN--GRA 437 (559)
T ss_pred HHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhcc--CCE
Confidence 778998 9988765433 21 1246677888899999999999997 566777777752 135
Q ss_pred EeeecCCccHH
Q 018760 175 VIGSGTNLDSS 185 (350)
Q Consensus 175 viG~g~~ld~~ 185 (350)
+|++|+-.+..
T Consensus 438 i~AtGspf~pv 448 (559)
T PTZ00317 438 IVASGSPFPPV 448 (559)
T ss_pred EEEECCCCCCc
Confidence 88998876654
No 341
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.68 E-value=0.092 Score=48.90 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=49.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g 114 (350)
++||+|||+|.||..++..+...+-. ++ .+++.+. ..+.....+. . .+..++|++++ .+.|+||++++
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~-~~~~~~~~~~------~--~~~~~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEH-SIDAVRRALG------E--AVRVVSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCC-CHHHHhhhhc------c--CCeeeCCHHHhccCCCEEEECCC
Confidence 47999999999999999888876432 33 3334332 1221111111 1 13334566554 56899999974
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD 147 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~ 147 (350)
. ....+++..+-+...+
T Consensus 71 ~----------------~~~~e~~~~aL~aGk~ 87 (265)
T PRK13303 71 H----------------AALKEHVVPILKAGID 87 (265)
T ss_pred H----------------HHHHHHHHHHHHcCCC
Confidence 2 2335566666665555
No 342
>PRK09242 tropinone reductase; Provisional
Probab=95.68 E-value=0.35 Score=44.05 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA 85 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~ 85 (350)
+.+++.|+|+ |.+|..++..|++.|. +|++++++++.++....++...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~ 56 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEE 56 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhh
Confidence 4468999998 8999999999999985 8999999988776655555543
No 343
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.16 Score=46.37 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=49.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
++|.|+|+ |.+|..++..|+..+. +|++++++++.++....++.... ....+... ++.+. +
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG---GEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47999999 9999999999998885 89999998876654444443321 12222211 12111 2
Q ss_pred CCCCEEEEecCCC
Q 018760 104 AGSDLCIVTAGAR 116 (350)
Q Consensus 104 ~~aDiVIi~~g~~ 116 (350)
...|+||.++|..
T Consensus 77 ~~id~vi~~ag~~ 89 (263)
T PRK06181 77 GGIDILVNNAGIT 89 (263)
T ss_pred CCCCEEEECCCcc
Confidence 3679999998753
No 344
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.66 E-value=0.035 Score=50.67 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=35.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD 81 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d 81 (350)
..++.|+|+ |.+|..++..|++.|. +|+++|++.++++....+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~ 49 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALE 49 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHH
Confidence 357999998 9999999999999985 899999998776644333
No 345
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.23 Score=45.21 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=66.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.+++.|+|+ |.+|..++..|++.|. +|++.++++++++....++.... ....+... ++.+ .
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899998 8999999999999985 89999999887776555554321 11111111 1111 1
Q ss_pred cCCCCEEEEecCCCc--Cc--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 TAGSDLCIVTAGARQ--IA--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 l~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
....|++|.++|... .+ ..+. ...+.-|. ...+.+.+.+.+.. .+.+|+++.
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 236799999988531 12 1121 22344444 34455566665543 344555543
No 346
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.19 Score=45.64 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEID 50 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 458999998 8999999999999996 89999998876665444444
No 347
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.64 E-value=0.03 Score=45.00 Aligned_cols=67 Identities=18% Similarity=0.331 Sum_probs=45.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEEec
Q 018760 38 TKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi~~ 113 (350)
+||+|||+|.+|......+... +-..-+.++|.++++.+. +.... ... ..+|.+ .++ +.|+|+++.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~----~~~~~----~~~--~~~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEA----FAEKY----GIP--VYTDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHH----HHHHT----TSE--EESSHHHHHHHTTESEEEEES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHH----HHHHh----ccc--chhHHHHHHHhhcCCEEEEec
Confidence 5899999999999998877777 333234589999877653 22222 223 345664 344 799999996
Q ss_pred C
Q 018760 114 G 114 (350)
Q Consensus 114 g 114 (350)
.
T Consensus 71 p 71 (120)
T PF01408_consen 71 P 71 (120)
T ss_dssp S
T ss_pred C
Confidence 4
No 348
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.64 E-value=0.05 Score=51.37 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
||.|||+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 68999999999999999999997 699999965
No 349
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.15 Score=46.94 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|+ |.+|..++..|+..|. +|+++++++++++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 468999998 9999999999999986 89999998876665444443
No 350
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.61 E-value=0.24 Score=45.01 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
+.+++.|+|| |.+|..++..|+..|. +|++.|+++++++....++.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQ 55 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHh
Confidence 3457999998 8999999999999885 999999998777655555543
No 351
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.27 Score=45.64 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=66.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
+.+.|+|+ |.+|..++..|+..|. +|++.|+++++++....++.... ........ +|.++ +
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46888898 8999999999999985 89999999877765554554211 11111111 12111 2
Q ss_pred CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 104 AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...|+||..+|..... ..+.. ..+..| ....+.+.+.+.+....+.+|+++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3479999998863211 11221 223334 3455555565655543455666653
No 352
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.18 Score=46.28 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEc--CCc-------ccc-
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILAS--VDY-------AVT- 103 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al- 103 (350)
+.++|.|+|| |.+|..++..|++.+- .+|+++++++++ ++....++..... ....+... +|. +.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg-~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAP-ARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCC-CeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHHH
Confidence 3457999999 9999999999998752 289999999875 6655555543210 01111111 111 111
Q ss_pred --CCCCEEEEecCCCcCccc---cH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760 104 --AGSDLCIVTAGARQIAGE---SR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 104 --~~aDiVIi~~g~~~~~g~---~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t 154 (350)
.+.|++|.++|....... +. .+.+..|. .+.+.+.+.+.+... +.++++|
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 368999998876432111 11 12344443 333556677766544 4455554
No 353
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.59 E-value=0.026 Score=57.56 Aligned_cols=125 Identities=20% Similarity=0.363 Sum_probs=82.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHh-----cCCC-----CeEEEEeCCc----cc---hHHHHHHHHHHhhcCCCceEEEcCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILT-----QDFV-----EELALVDAKA----DK---LRGEMLDLQHAAAFLPRTKILASVD 99 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~-----~~~~-----~ev~L~D~~~----~~---l~~~~~dl~~~~~~~~~~~v~~t~~ 99 (350)
..||++.|||+.|..++..|.. .|+- ..++++|.+- ++ +......+.+. .. ...+
T Consensus 321 d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~------~~--~~~~ 392 (581)
T PLN03129 321 DQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD------HE--PGAS 392 (581)
T ss_pred hceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh------cc--cCCC
Confidence 4699999999999999987776 3552 5899999853 22 22222222221 11 1235
Q ss_pred c-cccCC--CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc---chHHHHHHHHhCCCCC
Q 018760 100 Y-AVTAG--SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV---DILTYVAWKLSGLPSN 173 (350)
Q Consensus 100 ~-~al~~--aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---~~~~~~~~~~sg~~~~ 173 (350)
+ +++++ +|++|=+.+.+ |- +-+++.+.|.+++++.+|.-.|||. ++..+-+++++. -+
T Consensus 393 L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~--G~ 456 (581)
T PLN03129 393 LLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTG--GR 456 (581)
T ss_pred HHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhc--CC
Confidence 5 67888 89988775433 21 1245677788889999999999997 666677777762 13
Q ss_pred cEeeecCCccHH
Q 018760 174 RVIGSGTNLDSS 185 (350)
Q Consensus 174 rviG~g~~ld~~ 185 (350)
-+|++|+-.+..
T Consensus 457 ai~AtGSPf~pv 468 (581)
T PLN03129 457 AIFASGSPFDPV 468 (581)
T ss_pred EEEEeCCCCCCe
Confidence 588888766543
No 354
>PRK05855 short chain dehydrogenase; Validated
Probab=95.58 E-value=0.13 Score=52.46 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=70.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV---------- 102 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------- 102 (350)
+.+++.|+|| |.+|..++..|+..|. +|+++++++++++....++.... ....+... +|.++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4568999999 9999999999999986 89999999887765555554321 11122211 12111
Q ss_pred -cCCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 -TAGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 -l~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
....|++|.++|..... ..+.. ..+.-| ....+.+.+.+.+....+.||++|-
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 23479999999864321 11211 223334 3455556666666555566777654
No 355
>PLN02306 hydroxypyruvate reductase
Probab=95.58 E-value=0.08 Score=52.05 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccc-hHHHHHHHHH-Hhh-cCCCceEEEcCCc-cccCCCCEE
Q 018760 35 KRHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADK-LRGEMLDLQH-AAA-FLPRTKILASVDY-AVTAGSDLC 109 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~-l~~~~~dl~~-~~~-~~~~~~v~~t~~~-~al~~aDiV 109 (350)
....+|+|||.|.+|+.+|..+. .-|. +|..+|..... .......... ... ......+....+. +.++.||+|
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 34579999999999999998875 4454 89999987531 1110001100 000 0001122222355 568999999
Q ss_pred EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
++..... + +++ .++ |. +.+....|++++||++--.=+-...+.+. +...++.|.
T Consensus 241 ~lh~Plt--~-~T~-~li--n~-------~~l~~MK~ga~lIN~aRG~lVDe~AL~~A--L~sg~i~gA 294 (386)
T PLN02306 241 SLHPVLD--K-TTY-HLI--NK-------ERLALMKKEAVLVNASRGPVIDEVALVEH--LKANPMFRV 294 (386)
T ss_pred EEeCCCC--h-hhh-hhc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHhCCeeEE
Confidence 9985321 1 111 111 21 23334468999999984332323333333 223466555
No 356
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.24 Score=44.79 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=50.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al 103 (350)
+++.|+|+ |.+|..++..|++.+. +|++.++++++++....++..... .....+... ++.+ .+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYP-GIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 47899998 9999999999999884 899999998877655555543211 001111111 1111 13
Q ss_pred CCCCEEEEecCCC
Q 018760 104 AGSDLCIVTAGAR 116 (350)
Q Consensus 104 ~~aDiVIi~~g~~ 116 (350)
...|+||.++|..
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 4689999998764
No 357
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.33 Score=43.63 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=29.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.++|.|+|| |.+|..++..|++.+. +|++++...
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHP 40 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcc
Confidence 468999998 9999999999999885 899988643
No 358
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.041 Score=49.59 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
+.+++.|+|+ |.+|..++..|+..+. +|+++++++++++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~ 47 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD 47 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence 3468999999 8999999999999985 8999999887654
No 359
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=95.55 E-value=0.064 Score=48.67 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=64.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------cC
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------TA 104 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l~ 104 (350)
++.|+|+ |.+|..++..|++.|. +|+++++++++++....++.... ....+... +|.+. +.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG---GKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 6889998 9999999999999985 89999998766654444444211 11122111 12221 23
Q ss_pred CCCEEEEecCCCcC-c--cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760 105 GSDLCIVTAGARQI-A--GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 105 ~aDiVIi~~g~~~~-~--g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~t 154 (350)
..|+||.++|.... + ..+..+ .+..|. .+++.+.+.+.+.+..+.++++|
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 56999999875321 1 122222 233343 34445566666655456666654
No 360
>PRK06182 short chain dehydrogenase; Validated
Probab=95.53 E-value=0.056 Score=49.93 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
.++|.|+|+ |.+|..++..|++.|. +|++.++++++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~ 41 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKME 41 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence 358999998 9999999999999885 8999999887664
No 361
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.32 Score=43.94 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=66.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.+.+.|+|+ +.+|..++..|++.|. +|+++++++++++....++.... ........ ++.+ .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 357889999 7899999999999996 89999999988776555554321 11111111 1211 1
Q ss_pred cC-CCCEEEEecCCCcCc----cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 TA-GSDLCIVTAGARQIA----GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 l~-~aDiVIi~~g~~~~~----g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+. .-|++|..+|....+ ..+..+ .+..| ..+.+...+.+.+....+.||++|.
T Consensus 80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 23 689999998642211 112111 12222 3344555666665444566777764
No 362
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.51 E-value=0.037 Score=55.19 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=48.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDL 108 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDi 108 (350)
.+++|.|+|+|.+|..++..|...+. +++++|.++++.+. +.... ....+... ++ + ..+++||.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~--~v~vid~~~~~~~~----~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY--SVKLIERDPERAEE----LAEEL---PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHHHC---CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 45799999999999999999988775 89999999986653 33221 01222211 12 2 24789999
Q ss_pred EEEecC
Q 018760 109 CIVTAG 114 (350)
Q Consensus 109 VIi~~g 114 (350)
||++.+
T Consensus 301 vi~~~~ 306 (453)
T PRK09496 301 FIALTN 306 (453)
T ss_pred EEECCC
Confidence 988753
No 363
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.21 Score=45.54 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCe-EEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEE-LALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV---------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~e-v~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------- 102 (350)
.++|.|+|| |.+|..++..|+..+. + |++++++++.+.....++.... ........ ++.++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG---AKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 468999999 8999999999998885 5 9999998766654333342111 11111111 12111
Q ss_pred -cCCCCEEEEecCCCcCc---cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 -TAGSDLCIVTAGARQIA---GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 -l~~aDiVIi~~g~~~~~---g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+.+.|+||.++|..... ..+..+ .+..|. .+++...+.+.+....+.++++|.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 13689999998764321 112211 233333 334445555554433455666653
No 364
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.14 Score=51.10 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC-CCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA-GSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~-~aDiVIi~~ 113 (350)
+.++|.|+|+|.+|.+.+..|+..|. +|.+.|.+.+........+... ..++....+... +. ++|+||...
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE-----GIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc-----CCEEEeCCCCHHHhcCcCCEEEECC
Confidence 34589999999999999999999995 8999998764333222334321 223432223322 34 389999998
Q ss_pred CCCc
Q 018760 114 GARQ 117 (350)
Q Consensus 114 g~~~ 117 (350)
|.+.
T Consensus 77 gi~~ 80 (447)
T PRK02472 77 GIPY 80 (447)
T ss_pred CCCC
Confidence 8764
No 365
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.056 Score=50.58 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCC-CEEEEecC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGS-DLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~a-DiVIi~~g 114 (350)
|+|.|+|+ |.+|+.++..|++.|. +|+.+|+......... .+.. + ....+.-.... +.++.+ |.||.+++
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~---~~~~-~-~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL---SGVE-F-VVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc---cccc-e-eeecccchHHHHHHHhcCCCEEEEccc
Confidence 35999997 9999999999999875 9999999775543211 1100 0 00111100111 345566 99999987
Q ss_pred CCcCccccH---HHHHHhhHHHHHHHHhhhhc
Q 018760 115 ARQIAGESR---LNLLQRNLSLFKAIIPPLVK 143 (350)
Q Consensus 115 ~~~~~g~~r---~~~~~~n~~i~~~i~~~i~~ 143 (350)
....++..+ .++...|+.-.+.+.+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 554333322 34677899999999999888
No 366
>PLN02572 UDP-sulfoquinovose synthase
Probab=95.47 E-value=0.2 Score=50.23 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-------hH------HHHHHHHHHhh-cCCCceEEEc-
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-------LR------GEMLDLQHAAA-FLPRTKILAS- 97 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-------l~------~~~~dl~~~~~-~~~~~~v~~t- 97 (350)
..+++||.|+|| |.+|++++..|+..|. +|+++|....+ ++ .....+..... .....++...
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~D 121 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGD 121 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECC
Confidence 335678999998 9999999999999985 89999853210 00 00011111000 0011222211
Q ss_pred -CCcc----ccC--CCCEEEEecCCCcCc-c-ccH---HHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760 98 -VDYA----VTA--GSDLCIVTAGARQIA-G-ESR---LNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153 (350)
Q Consensus 98 -~~~~----al~--~aDiVIi~~g~~~~~-g-~~r---~~~~~~n~~i~~~i~~~i~~~~p~a~viv~ 153 (350)
+|.+ .++ ++|+||-+++....+ . .+. ...+..|+.-...+.+.+.+++....+|.+
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~ 189 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL 189 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 1222 244 479999987543211 1 111 223456888888888888877654444444
No 367
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.19 Score=46.10 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~ 79 (350)
.+++.|+|+ |.+|..++..|++.|. +|++.|+++++++...
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVA 47 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH
Confidence 358899998 9999999999999986 8999999987665433
No 368
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.33 Score=46.62 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------- 102 (350)
.++|.|+|| |.+|..++..|+..|. +|+++++++++++....++.... ........ +|.++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999 9999999999999985 89999999887776555554321 11111111 12221
Q ss_pred cCCCCEEEEecCCCcC-c--cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 TAGSDLCIVTAGARQI-A--GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~-~--g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+...|++|.++|.... + ..+..+ .+.- +....+.+.+.+.+.. .+.+|+++-
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 2367999999875321 1 111111 1222 2445556666665543 355666653
No 369
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.19 Score=45.54 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
+.++|.|+|+ |.+|..++..|++.|. +|+++|+++++++....++.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 3457899998 8999999999999985 899999988777655555543
No 370
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.3 Score=43.95 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
++++.|+|+ |.+|..++..|++.|. +|+++++++++++....++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAEL 50 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence 457899998 9999999999999986 8999999887665443334
No 371
>PRK05717 oxidoreductase; Validated
Probab=95.43 E-value=0.032 Score=50.93 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
.+++.|+|+ |.+|..++..|++.|. +|+++|+++++.+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~ 48 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGS 48 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHH
Confidence 457999998 9999999999999885 8999999876554
No 372
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.43 E-value=0.15 Score=49.49 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=32.1
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
.+|+|+|+|.+|.-.+..+...|. .+|+++|++++|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~ 207 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLE 207 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHH
Confidence 389999999999988766666664 68999999999886
No 373
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.43 E-value=0.057 Score=50.49 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=65.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CCEE
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SDLC 109 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aDiV 109 (350)
||.|+|| |.+|..++..|+..+...+|+++|+...... ...+..... .....+... +|. +++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 5899999 9999999999988763348888886432111 011111110 012222211 122 23555 8999
Q ss_pred EEecCCCcC-c-cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQI-A-GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~~-~-g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|.+++.... . .......+..|+.-...+++.+.+...+..++.+|
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 999864321 1 12233456678888888888887764454455554
No 374
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.17 Score=45.78 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~ 83 (350)
.+++.|+|| |.+|..++..|+..|. +|++++++.+ +++....++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~ 52 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIE 52 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHH
Confidence 358999998 9999999999999885 8999888653 3443333343
No 375
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.41 E-value=0.43 Score=44.06 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=37.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIK 55 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 4467889998 8999999999999986 89999998876665555554
No 376
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.37 E-value=0.32 Score=43.71 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c-------
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V------- 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a------- 102 (350)
.+++.|+|+ |.+|..++..|+..|. +|+++++++++++....++.... ....+... ++.+ .
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG---VKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357999998 8999999999999885 89999998876654444443211 11222211 1111 1
Q ss_pred cCCCCEEEEecCCC
Q 018760 103 TAGSDLCIVTAGAR 116 (350)
Q Consensus 103 l~~aDiVIi~~g~~ 116 (350)
+.+.|+||.++|..
T Consensus 82 ~~~id~vi~~ag~~ 95 (239)
T PRK07666 82 LGSIDILINNAGIS 95 (239)
T ss_pred cCCccEEEEcCccc
Confidence 23789999998764
No 377
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.36 E-value=0.32 Score=46.20 Aligned_cols=45 Identities=13% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
+.++|.|+|+ |.+|..++..|+..|. +|+++++++++++....++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh
Confidence 3457999998 9999999999999984 8999999987776554444
No 378
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.33 E-value=0.04 Score=49.84 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=38.1
Q ss_pred cchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 15 LDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.|...+....++.... ..+.++|+|.|.|+||+.++..|.+.|. ..|.+.|.+.
T Consensus 4 ~Gv~~~~~~~~~~~~~---~l~g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~g 57 (217)
T cd05211 4 YGVVVAMKAAMKHLGD---SLEGLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPDG 57 (217)
T ss_pred hHHHHHHHHHHHHcCC---CcCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 3444444333344432 3356799999999999999999999874 4677889876
No 379
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.30 E-value=0.15 Score=51.27 Aligned_cols=93 Identities=15% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG 114 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g 114 (350)
..||.|+|.|..|.+++..|...|. +|.++|.++.. ......++... ...+....+. +.+.++|+||.+.|
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL-----GVKLVLGENYLDKLDGFDVIFKTPS 86 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC-----CCEEEeCCCChHHhccCCEEEECCC
Confidence 4589999999999999999999996 89999987532 11111223321 2334333332 55789999999988
Q ss_pred CCcCccccHHHHHHhhHHHHHHH
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAI 137 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i 137 (350)
.+...- ........+++++.++
T Consensus 87 i~~~~p-~~~~a~~~~i~i~s~~ 108 (458)
T PRK01710 87 MRIDSP-ELVKAKEEGAYITSEM 108 (458)
T ss_pred CCCCch-HHHHHHHcCCcEEech
Confidence 764321 1222234567776554
No 380
>PRK14851 hypothetical protein; Provisional
Probab=95.29 E-value=0.065 Score=56.43 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|-|
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D 76 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFD 76 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCC
Confidence 35799999999999999999999998 799999964
No 381
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.29 E-value=0.32 Score=43.84 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=36.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
+..++.|+|+ |.+|..++..|++.|. .|+++|+++++++....++.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 3458999998 9999999999999885 89999999877665444443
No 382
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.27 E-value=0.056 Score=48.12 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=23.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELA 66 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~ 66 (350)
|||+|||+ |.||+.++..|.+.|+ +|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence 69999999 9999999999998885 553
No 383
>PRK07877 hypothetical protein; Provisional
Probab=95.25 E-value=0.06 Score=56.94 Aligned_cols=34 Identities=38% Similarity=0.579 Sum_probs=31.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
..||+|+|+| +|++++..|+..|++++|+|+|-|
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 5689999998 999999999999977899999975
No 384
>PRK09135 pteridine reductase; Provisional
Probab=95.25 E-value=0.19 Score=45.14 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~ 83 (350)
.++|.|+|| |.+|++++..|++.+. +|++++++. ++++....++.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~ 52 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELN 52 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 358999999 9999999999999885 899999853 33443333444
No 385
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.27 Score=44.97 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=66.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l 103 (350)
..+.|+|| |.+|..++..|++.|. +|++.++++++++....++..... ......... +|.++ +
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFP-GARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 47889999 8999999999999985 899999998887765555543311 001111111 12211 2
Q ss_pred CCCCEEEEecCCCcCc---cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 104 AGSDLCIVTAGARQIA---GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
...|++|.++|..... ..+..+ .+.. .....+.+.+.+++.. .+.++++|-
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 4579999998864211 111111 1222 2344566666666543 355666653
No 386
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.24 E-value=0.17 Score=48.82 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.++++||+|+|+|.+|...+..+.+.+-+.-+.+.|.+.
T Consensus 2 ~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 2 ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred CCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 344689999999999999888877654232334455443
No 387
>PRK09186 flagellin modification protein A; Provisional
Probab=95.24 E-value=0.37 Score=43.67 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|+ |.+|..++..|+..+. +|++.++++++++....++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLG 49 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHH
Confidence 468999999 8999999999999985 89999999887765555553
No 388
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.22 Score=46.86 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----------- 101 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----------- 101 (350)
+.++|.|+|| |.+|..++..|++.|. +|+++++++++++....++..... .....+... +|.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATP-GADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3457899998 9999999999999985 899999988776654445542210 011122111 1111
Q ss_pred ccCCCCEEEEecCCCcCcc-cc---HHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 102 VTAGSDLCIVTAGARQIAG-ES---RLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~~g-~~---r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
.+...|+||.++|....+. .+ -...+..| ..+.+.+.+.+.+.. .+.+|++|.
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 1235799999987532111 11 11123333 333566666666543 345666653
No 389
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.23 Score=46.61 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=37.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
+..++.|+|+ |.+|..++..|+..|. +|++.++++++++....++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 3457999998 8999999999999995 8999999988776544444
No 390
>PRK08324 short chain dehydrogenase; Validated
Probab=95.22 E-value=0.18 Score=53.38 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V------ 102 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a------ 102 (350)
+.++|.|+|+ |.+|..++..|+..|. +|+++|+++++++.....+.... ....... ++.+ .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~~----~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGPD----RALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhccC----cEEEEEecCCCHHHHHHHHHHHHH
Confidence 4468999997 9999999999999885 89999999877664444443210 1111111 1211 1
Q ss_pred -cCCCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760 103 -TAGSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 103 -l~~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
..+.|+||.++|..... ..+..+ .+..| ..+++...+.+++....+.+++++
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 23689999998854321 111111 12223 444555555555544335566665
No 391
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.24 Score=45.35 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV---------- 102 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------- 102 (350)
+..+|.|+|+ |.+|..++..|+..|. +|+++++++++++....++.. .....+... +|.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY----PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 4468999998 9999999999999985 899999998766544333311 111222211 12111
Q ss_pred cCCCCEEEEecCCC
Q 018760 103 TAGSDLCIVTAGAR 116 (350)
Q Consensus 103 l~~aDiVIi~~g~~ 116 (350)
+...|+||.++|..
T Consensus 78 ~~~id~lv~~ag~~ 91 (263)
T PRK09072 78 MGGINVLINNAGVN 91 (263)
T ss_pred cCCCCEEEECCCCC
Confidence 24579999998764
No 392
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.2 Score=50.21 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCcc------ccCCCCEEEE
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDYA------VTAGSDLCIV 111 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~~------al~~aDiVIi 111 (350)
||.|||+|..|.+.|..|...|. +|.++|.++. ........|... ..++....+.+ .+.+.|.||.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE-----GITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc-----CCEEEECCccchhhhhHHhhcCCEEEE
Confidence 79999999999999999999996 8999998653 222111123321 22343222222 4678999999
Q ss_pred ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE--cCCcchHHHHH
Q 018760 112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV--ANPVDILTYVA 164 (350)
Q Consensus 112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~~~~~~~~ 164 (350)
+.|.+...- ........+++++.++........ +..+|-+ ||-=..++.++
T Consensus 75 s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml 127 (459)
T PRK02705 75 SPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALL 127 (459)
T ss_pred CCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHH
Confidence 888764221 111222346666666544333222 2224444 45444444433
No 393
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.28 Score=44.82 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-------cccCCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-------AVTAGS 106 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al~~a 106 (350)
.+++.|+|+ |.+|..++..|+..|. +|+++++++++++....++..... ....+... ++. +.+...
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCCC
Confidence 468899998 8999999999999886 899999998877655555543211 11111111 121 124568
Q ss_pred CEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760 107 DLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 107 DiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|++|.++|.... + ..+. ...+..|+ .+.+.+.+.+.+.. .+.++++|
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is 139 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVI 139 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEec
Confidence 999999876421 1 1111 11233333 34555556665543 34566655
No 394
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.16 E-value=0.12 Score=46.49 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
+.+++.|+|| |.+|..++..|++.+. .|++.+++.++++.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~ 45 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEA 45 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHH
Confidence 3468999998 9999999999999985 78888888776654
No 395
>PLN02253 xanthoxin dehydrogenase
Probab=95.16 E-value=0.1 Score=48.36 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM 79 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~ 79 (350)
.+++.|+|+ |.+|..++..|+..|. +|+++|++++..+...
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~ 59 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVC 59 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH
Confidence 457999998 9999999999999985 8999999876555433
No 396
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.15 E-value=0.029 Score=46.03 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=44.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
|||+|+|+ |.||+.++..+.+..-..=+..+|++++...+ .|+.+..... ...+..++++ +.+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGELAGIG-PLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhhhhCcC-CcccccchhHHHhcccCCEEEEcC
Confidence 69999999 99999999999985432224557887632222 2343332211 2233345676 4577899988874
No 397
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.059 Score=50.05 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=32.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
++|.|+|| |.+|..++..|++.|. +|++.++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH
Confidence 47899999 9999999999999885 8999999887664
No 398
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.10 E-value=0.079 Score=40.32 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA 70 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~ 70 (350)
.+..|++|+|+|.+|..++..|.+.+ ..+|.++|+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 44569999999999999999998875 358999988
No 399
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.09 E-value=0.38 Score=43.49 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
+.++|.|+|+ |.+|..++..|++.|. +|+++|++.+.++....++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 4568999998 9999999999999885 899999998777655555553
No 400
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.28 Score=45.31 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=34.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
..+.|+|| |.+|..++..|+..|. +|++++++++.++.....+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 47 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQA 47 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHH
Confidence 36889998 9999999999999985 8999999887665443333
No 401
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.09 E-value=0.12 Score=48.24 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=46.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-HhhcCCCceEEEcCCc----cccCCCCEEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAFLPRTKILASVDY----AVTAGSDLCI 110 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-~~~~~~~~~v~~t~~~----~al~~aDiVI 110 (350)
.+.||+.||.|.+-.+........+....+.-+|++++..+ .+..+-. ........++. +.|. .++++.|+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~-~a~~lv~~~~~L~~~m~f~-~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANE-LARRLVASDLGLSKRMSFI-TADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHH-HHHHHHH---HH-SSEEEE-ES-GGGG-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhcccccCCeEEE-ecchhccccccccCCEEE
Confidence 45699999999986665444333333347889999998654 3333332 11122234554 3342 3578999999
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~ 153 (350)
+++-+.. +. ....+++..+++.|. |++.+++=
T Consensus 198 lAalVg~----~~----e~K~~Il~~l~~~m~---~ga~l~~R 229 (276)
T PF03059_consen 198 LAALVGM----DA----EPKEEILEHLAKHMA---PGARLVVR 229 (276)
T ss_dssp E-TT-S------------SHHHHHHHHHHHS----TTSEEEEE
T ss_pred Ehhhccc----cc----chHHHHHHHHHhhCC---CCcEEEEe
Confidence 9964331 10 113455555555444 56655443
No 402
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.09 E-value=0.11 Score=49.75 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...+++.|||.|.+|+.+|..+..-| -+|+.+|+.+. -+ ..... ..... +. +.++.||+|++..
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fg--m~v~y~~~~~~-~~-----~~~~~------~~~y~-~l~ell~~sDii~l~~ 208 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFG--MKVLYYDRSPN-PE-----AEKEL------GARYV-DLDELLAESDIISLHC 208 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCCC-hH-----HHhhc------Cceec-cHHHHHHhCCEEEEeC
Confidence 44679999999999999999888444 59999999874 21 11111 11112 24 5699999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~ 180 (350)
+... +++ .++ |. +.+++..|.+++||++--.=+-..++.+. +...++-|.|.
T Consensus 209 Plt~---~T~-hLi--n~-------~~l~~mk~ga~lVNtaRG~~VDe~ALi~A--L~~g~i~gagl 260 (324)
T COG1052 209 PLTP---ETR-HLI--NA-------EELAKMKPGAILVNTARGGLVDEQALIDA--LKSGKIAGAGL 260 (324)
T ss_pred CCCh---HHh-hhc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHhCCcceEEe
Confidence 4211 111 111 22 23344478899999975433333333333 22345555543
No 403
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.08 E-value=0.047 Score=56.31 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=73.8
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CCc-----cccCCCCEEE
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VDY-----AVTAGSDLCI 110 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~~-----~al~~aDiVI 110 (350)
.+|.|+|+|.+|+.++..|.+.+. +++++|.|+++.+. +.+.. .++. .. +|. ..+++||.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~----~~~~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDE----LRERG-----IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHH----HHHCC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 579999999999999999999885 89999999987653 33211 1222 11 121 2378999988
Q ss_pred EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760 111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRF 189 (350)
Q Consensus 111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~ 189 (350)
++.+.. .+|..++. .+++.+|+..++.-. ||. ..+.+ +..|. +.++ +. ..-..+
T Consensus 487 v~~~~~-----------~~~~~iv~----~~~~~~~~~~iiar~~~~~--~~~~l-~~~Ga--d~vv----~p-~~~~a~ 541 (558)
T PRK10669 487 LTIPNG-----------YEAGEIVA----SAREKRPDIEIIARAHYDD--EVAYI-TERGA--NQVV----MG-EREIAR 541 (558)
T ss_pred EEcCCh-----------HHHHHHHH----HHHHHCCCCeEEEEECCHH--HHHHH-HHcCC--CEEE----Ch-HHHHHH
Confidence 885321 12333332 334446776655554 442 22223 34554 4665 12 233455
Q ss_pred HHHHHcCCCC
Q 018760 190 LLADHLDVNA 199 (350)
Q Consensus 190 ~la~~l~v~p 199 (350)
.+++.+..+.
T Consensus 542 ~i~~~l~~~~ 551 (558)
T PRK10669 542 TMLELLETPP 551 (558)
T ss_pred HHHHHhcCCC
Confidence 5666665433
No 404
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.08 E-value=0.087 Score=49.67 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=59.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEec
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~~ 113 (350)
|||.|+|+ |.+|++++..|+..+ +|+.+|+......+ |+.+. ... +.++ ++|+||-++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~~~~---Dl~d~------------~~~~~~~~~~~~D~Vih~A 62 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTDYCG---DFSNP------------EGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccccccC---CCCCH------------HHHHHHHHhcCCCEEEECC
Confidence 68999998 999999999998887 57888875321100 11110 011 2233 589999987
Q ss_pred CCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 114 GARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 114 g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+..... ..........|+.-...+++.+.+.. ..+|.+|
T Consensus 63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S 103 (299)
T PRK09987 63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS 103 (299)
T ss_pred ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 643211 11223334568888888888887764 2455444
No 405
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.08 E-value=0.054 Score=52.12 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=29.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
++||+|.|+|.+|+.+...|.+++.-.++.++-+|.
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind 36 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINE 36 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 369999999999999999888875436788886654
No 406
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.4 Score=43.83 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCeEEEEcC-C-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 37 HTKISVIGT-G-NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 37 ~~KI~IIGA-G-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
.+++.|+|+ | .+|..++..|+..|. +|++.|+++++++....++..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~ 64 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAA 64 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHH
Confidence 468999998 6 699999999999985 799999988877655555543
No 407
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.2 Score=46.50 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=45.1
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------cCCC
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------TAGS 106 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------l~~a 106 (350)
.+.|.|+|.+|..++..|. .| .+|++.|+++++++....++.... ....+... +|.++ +...
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G--~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AG--KKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CC--CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4566788999999999886 56 489999998877665444444211 11111111 12111 2357
Q ss_pred CEEEEecCCC
Q 018760 107 DLCIVTAGAR 116 (350)
Q Consensus 107 DiVIi~~g~~ 116 (350)
|++|.++|..
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999999864
No 408
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.21 Score=50.45 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g 114 (350)
..+||.|+|+|..|.+++..|...|. +|..+|.+..... ++.... ..++....+ .+.+.++|+||.+.|
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~----~~l~~~----gi~~~~~~~~~~~~~~~d~vV~Spg 83 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETARH----KLIEVT----GVADISTAEASDQLDSFSLVVTSPG 83 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHHHH----HHHHhc----CcEEEeCCCchhHhcCCCEEEeCCC
Confidence 44589999999999999999999996 8999997654221 221111 233432222 245788999999988
Q ss_pred CCcCccccHHHHHHhhHHHHHHHHh
Q 018760 115 ARQIAGESRLNLLQRNLSLFKAIIP 139 (350)
Q Consensus 115 ~~~~~g~~r~~~~~~n~~i~~~i~~ 139 (350)
.+...- ........+++++.++.-
T Consensus 84 i~~~~p-~~~~a~~~gi~v~~~~el 107 (473)
T PRK00141 84 WRPDSP-LLVDAQSQGLEVIGDVEL 107 (473)
T ss_pred CCCCCH-HHHHHHHCCCceeeHHHH
Confidence 874321 122223445666665553
No 409
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.03 E-value=0.24 Score=44.54 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=71.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEE-cCCccccCCCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~-t~~~~al~~aDiVIi~~ 113 (350)
+.+||+|||+|.+|.-=+..|+..|- +|+++.... +.+. .+.... ...... .-+.+.+.++++||.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga--~v~Vvs~~~~~el~----~~~~~~----~i~~~~~~~~~~~~~~~~lviaAt 80 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA--DVTVVSPEFEPELK----ALIEEG----KIKWIEREFDAEDLDDAFLVIAAT 80 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC--EEEEEcCCccHHHH----HHHHhc----CcchhhcccChhhhcCceEEEEeC
Confidence 45699999999999999999999994 788887654 2222 222211 111211 11235678899999985
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHH
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~ 190 (350)
.. -+.-+.+++..++++ +.+|+ ..|. +++.+...+..++ .|++.|.--+-++-+.
T Consensus 81 ~d---------------~~ln~~i~~~a~~~~---i~vNv~D~p~~~~f~~Pa~~~r~~l----~iaIsT~G~sP~la~~ 138 (210)
T COG1648 81 DD---------------EELNERIAKAARERR---ILVNVVDDPELCDFIFPAIVDRGPL----QIAISTGGKSPVLARL 138 (210)
T ss_pred CC---------------HHHHHHHHHHHHHhC---CceeccCCcccCceecceeeccCCe----EEEEECCCCChHHHHH
Confidence 32 222233344434332 34444 3454 6666665444333 4577666544444444
Q ss_pred HHHH
Q 018760 191 LADH 194 (350)
Q Consensus 191 la~~ 194 (350)
+-++
T Consensus 139 ir~~ 142 (210)
T COG1648 139 LREK 142 (210)
T ss_pred HHHH
Confidence 4333
No 410
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.03 E-value=0.077 Score=50.65 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
+-..++|+|||.|++|+.+|..+..-|. +|..||+..... + . ... ..+. +.++.||+|++.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm--~V~~~d~~~~~~--------~-~----~~~---~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA--KVVYYSTSGKNK--------N-E----EYE---RVSLEELLKTSDIISIH 203 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC--EEEEECCCcccc--------c-c----Cce---eecHHHHhhcCCEEEEe
Confidence 3456799999999999999988876665 899999853210 0 0 111 1245 568999999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
..... +++ .++ |. +.+....|++++||++--
T Consensus 204 ~Plt~---~T~-~li--~~-------~~~~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 204 APLNE---KTK-NLI--AY-------KELKLLKDGAILINVGRG 234 (311)
T ss_pred CCCCc---hhh-ccc--CH-------HHHHhCCCCeEEEECCCc
Confidence 64221 111 111 11 223334689999999844
No 411
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.02 E-value=0.21 Score=50.21 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=50.6
Q ss_pred CCCeEEEEcCChhHHH-HHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760 36 RHTKISVIGTGNVGMA-IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG 114 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g 114 (350)
+.+||.|+|.|..|.+ +|..|...|. +|...|.+.... ..+|... ...+....+.+.+.++|+||.+.|
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~--~V~~~D~~~~~~---~~~l~~~-----gi~~~~~~~~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY--KVSGSDLKESAV---TQRLLEL-----GAIIFIGHDAENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC--eEEEECCCCChH---HHHHHHC-----CCEEeCCCCHHHCCCCCEEEECCC
Confidence 3458999999999999 7889999996 899999876421 1234321 223332223355778999999988
Q ss_pred CCc
Q 018760 115 ARQ 117 (350)
Q Consensus 115 ~~~ 117 (350)
.|.
T Consensus 76 i~~ 78 (461)
T PRK00421 76 IPD 78 (461)
T ss_pred CCC
Confidence 874
No 412
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.02 E-value=0.091 Score=48.72 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=58.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEecC
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVTAG 114 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~~g 114 (350)
||.|+|+ |.+|++++..|++.|. +|+++++... |+.+.. +. ++++ +.|+||.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~~-------d~~~~~------------~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQL-------DLTDPE------------ALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCccc-------CCCCHH------------HHHHHHHhCCCCEEEECCc
Confidence 6899998 9999999999999884 8999887521 111100 11 2233 3499999887
Q ss_pred CCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 115 ARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 115 ~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
...... .........|......+++.+.+... .+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 532211 12344556677777888877776543 344444
No 413
>PRK05599 hypothetical protein; Provisional
Probab=95.02 E-value=0.19 Score=45.72 Aligned_cols=115 Identities=15% Similarity=0.261 Sum_probs=66.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al 103 (350)
|.+.|+|+ +.+|..++..|++ + ..|++.++++++++....++..... ........ +|. +..
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g--~~Vil~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G--EDVVLAARRPEAAQGLASDLRQRGA--TSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C--CEEEEEeCCHHHHHHHHHHHHhccC--CceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 45789999 8899999999884 6 4899999999888766666654211 01111111 111 112
Q ss_pred CCCCEEEEecCCCcCcc---ccH---HHHHH----hhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 104 AGSDLCIVTAGARQIAG---ESR---LNLLQ----RNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 104 ~~aDiVIi~~g~~~~~g---~~r---~~~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
..-|++|.++|...... .+. .+... .+..+.+.+.+.+.+...++.||++|.-.
T Consensus 76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 46799999988642111 111 11121 22333445556665544456777776543
No 414
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.46 Score=43.94 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=33.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
+++|.|+|+ |.+|..++..|+..|. +|+++++++++++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~ 42 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA 42 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH
Confidence 357999999 9999999999999885 8999999887654
No 415
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.99 E-value=0.037 Score=50.67 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---cC---Cc-ccc-C
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---SV---DY-AVT-A 104 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t~---~~-~al-~ 104 (350)
+.+++||.|+|| |.+|+.++..|+..+. +|+++.++++++... +.. . ....+.. +. +. +.+ .
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~---~~~-~---~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS---LPQ-D---PSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh---ccc-C---CceEEEEeeCCCCHHHHHHHhhc
Confidence 445789999998 9999999999999885 888888877654321 111 0 1122221 11 11 345 6
Q ss_pred CCCEEEEecCCC
Q 018760 105 GSDLCIVTAGAR 116 (350)
Q Consensus 105 ~aDiVIi~~g~~ 116 (350)
++|+||.++|..
T Consensus 85 ~~d~vi~~~g~~ 96 (251)
T PLN00141 85 DSDAVICATGFR 96 (251)
T ss_pred CCCEEEECCCCC
Confidence 899999987753
No 416
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.99 E-value=0.22 Score=44.99 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+.++|.|+|| |.+|..++..|++.|. +|+++++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence 3468999999 8999999999999985 899999865
No 417
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.22 Score=45.17 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=47.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC-CCCEE
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA-GSDLC 109 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~-~aDiV 109 (350)
++|.|+|| |.+|..++..|++.|. +|++.+++++.++......... .....+... ++. +++. ..|+|
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR---GLALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 47999999 9999999999999985 8999999876554322222211 112222211 122 1233 79999
Q ss_pred EEecCCC
Q 018760 110 IVTAGAR 116 (350)
Q Consensus 110 Ii~~g~~ 116 (350)
|.++|..
T Consensus 78 i~~ag~~ 84 (257)
T PRK09291 78 LNNAGIG 84 (257)
T ss_pred EECCCcC
Confidence 9998764
No 418
>PRK09134 short chain dehydrogenase; Provisional
Probab=94.97 E-value=0.26 Score=45.02 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHH
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDL 82 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl 82 (350)
+...+++.|+|| |.+|..++..|++.+. ++++.+. +.++++.....+
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~ 54 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEI 54 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHH
Confidence 445568999999 8999999999999885 7877765 444444333333
No 419
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.95 E-value=0.071 Score=45.73 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=42.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
+..+|+|||.|+-|.+.|..|-.+|+ +|++-.+...+-. +......| ++. +-.|+++.||+|++..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~--~V~Vglr~~s~s~----~~A~~~Gf----~v~--~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV--NVIVGLREGSASW----EKAKADGF----EVM--SVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHH----HHHHHTT-----ECC--EHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC--CEEEEecCCCcCH----HHHHHCCC----eec--cHHHHHhhCCEEEEeC
Confidence 45699999999999999999999997 8888777665211 12222222 332 1237899999999995
No 420
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=94.95 E-value=0.3 Score=44.90 Aligned_cols=88 Identities=15% Similarity=0.286 Sum_probs=58.5
Q ss_pred CCeEEEEcCChh--------------------HHHHHHHHHhcCCCCeEEEEeCCccchHH-HHHHHHHHhhcCCCceEE
Q 018760 37 HTKISVIGTGNV--------------------GMAIAQTILTQDFVEELALVDAKADKLRG-EMLDLQHAAAFLPRTKIL 95 (350)
Q Consensus 37 ~~KI~IIGAG~v--------------------G~~~a~~l~~~~~~~ev~L~D~~~~~l~~-~~~dl~~~~~~~~~~~v~ 95 (350)
+|||+|.|||+- |+.+|..+++.|. +|+|.|.+.+-.+- +...++++ ..++.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH--DVVLaePn~d~~dd~~w~~vedA-----GV~vv 73 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH--DVVLAEPNRDIMDDEHWKRVEDA-----GVEVV 73 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC--cEEeecCCccccCHHHHHHHHhc-----CcEEe
Confidence 478888888853 5667888888885 99999998765542 23334443 23444
Q ss_pred EcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc
Q 018760 96 ASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK 143 (350)
Q Consensus 96 ~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~ 143 (350)
++|.++.+.+.+.|+...+. +.+..|.++|.+.+.+
T Consensus 74 -~dD~eaa~~~Ei~VLFTPFG-----------k~T~~Iarei~~hvpE 109 (340)
T COG4007 74 -SDDAEAAEHGEIHVLFTPFG-----------KATFGIAREILEHVPE 109 (340)
T ss_pred -cCchhhhhcceEEEEecccc-----------hhhHHHHHHHHhhCcC
Confidence 44568899999998874332 1356677777666554
No 421
>PRK14852 hypothetical protein; Provisional
Probab=94.89 E-value=0.095 Score=56.79 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK 71 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~ 71 (350)
+..||+|+|+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGV-G~I~L~D~D 365 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGI-GNFNLADFD 365 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 35799999999999999999999998 799999965
No 422
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.21 Score=46.12 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=32.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
+++.|+|| |.+|+.++..|++.|. .|+++++++++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~ 40 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALD 40 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence 47999998 9999999999999985 8999999876554
No 423
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.86 E-value=0.098 Score=47.61 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeC
Q 018760 12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDA 70 (350)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~ 70 (350)
.-|.|...+...-++.... ..+.++|+|.|.|+||+.++..|.+.+. .|+ +.|.
T Consensus 9 ~Tg~Gv~~~~~~~~~~~~~---~l~~~~v~I~G~G~VG~~~a~~L~~~g~--~vv~v~D~ 63 (227)
T cd01076 9 ATGRGVAYATREALKKLGI---GLAGARVAIQGFGNVGSHAARFLHEAGA--KVVAVSDS 63 (227)
T ss_pred cchHHHHHHHHHHHHhcCC---CccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECC
Confidence 4466766666666665542 3456899999999999999999999885 555 6676
No 424
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.062 Score=50.50 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=43.5
Q ss_pred CCCCeEEEEcCCh-hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 35 KRHTKISVIGTGN-VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGAG~-vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
-+..+|+|||+|. ||.+++..|...+. .|+.++... .+. +.+++||+||.+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~t-------------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSRS-------------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCCc-------------------------hhHHHHHhhCCEEEEC
Confidence 4457999999977 99999999998884 788887532 133 457899999999
Q ss_pred cCCC
Q 018760 113 AGAR 116 (350)
Q Consensus 113 ~g~~ 116 (350)
+|.|
T Consensus 209 vg~p 212 (286)
T PRK14175 209 VGKP 212 (286)
T ss_pred CCCC
Confidence 9866
No 425
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.81 E-value=0.13 Score=49.19 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
....+|+|||.|++|+.+|..+..-|. +|..+|+.... . .. . ..+. +.++.||+|+++.
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm--~V~~~~~~~~~-~--------~~------~---~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM--RVLIGQLPGRP-A--------RP------D---RLPLDELLPQVDALTLHC 205 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCCc-c--------cc------c---ccCHHHHHHhCCEEEECC
Confidence 455799999999999999988876665 89999975320 0 00 0 1145 5689999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG 179 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g 179 (350)
.... +++ .++ |. +.+....|++++||++--.=+-...+.+. +...++-|.+
T Consensus 206 Plt~---~T~-~li--~~-------~~~~~mk~ga~lIN~aRG~vVde~AL~~A--L~~g~i~gAa 256 (317)
T PRK06487 206 PLTE---HTR-HLI--GA-------RELALMKPGALLINTARGGLVDEQALADA--LRSGHLGGAA 256 (317)
T ss_pred CCCh---HHh-cCc--CH-------HHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEEE
Confidence 4221 111 111 22 22333468999999985432333333333 2345776553
No 426
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.78 E-value=0.1 Score=50.93 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=43.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQD-F-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
|++|+|+|| |.+|..+...++... + ..++.++.... ..+....+.. ....+....+.++++++|+|+.++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~--sg~~~~~f~g-----~~~~v~~~~~~~~~~~~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ--AGGAAPSFGG-----KEGTLQDAFDIDALKKLDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh--hCCcccccCC-----CcceEEecCChhHhcCCCEEEECC
Confidence 369999999 999999998566554 4 35688865532 2111111111 112233222345678999999987
Q ss_pred C
Q 018760 114 G 114 (350)
Q Consensus 114 g 114 (350)
+
T Consensus 74 ~ 74 (369)
T PRK06598 74 G 74 (369)
T ss_pred C
Confidence 5
No 427
>PRK08589 short chain dehydrogenase; Validated
Probab=94.78 E-value=0.34 Score=44.80 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.+++.|+|+ |.+|..++..|++.|. +|++++++ ++++....++.+.. ........ ++.+ .
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 357889999 8999999999999985 89999998 66665555554321 11111111 1111 1
Q ss_pred cCCCCEEEEecCCCcCcc----ccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 TAGSDLCIVTAGARQIAG----ESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g----~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+...|++|.++|.....+ .+.. ..+..| ..+.+.+.+.+.+. .+.+|+++.
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS 141 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS 141 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence 235799999988642211 1111 112223 34455566666543 256766654
No 428
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.77 E-value=0.16 Score=48.75 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 35 KRHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
-..++|+|||.|++|..++..+. .-|. +|..+|..... + .... + ..+ .. +. +.++.||+|++.
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm--~V~~~~~~~~~-~-----~~~~--~--~~~--~~-~l~ell~~sDvv~lh 207 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNM--PILYNARRHHK-E-----AEER--F--NAR--YC-DLDTLLQESDFVCII 207 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCC--EEEEECCCCch-h-----hHHh--c--CcE--ec-CHHHHHHhCCEEEEe
Confidence 45679999999999999998876 4454 88888875421 1 0011 1 112 12 55 568999999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG 179 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g 179 (350)
.... + +++ .++ |. +.+....|++++||++--.=+-...+.+. +...++-|.|
T Consensus 208 ~plt--~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~vVde~AL~~A--L~~g~i~gAa 259 (323)
T PRK15409 208 LPLT--D-ETH-HLF--GA-------EQFAKMKSSAIFINAGRGPVVDENALIAA--LQKGEIHAAG 259 (323)
T ss_pred CCCC--h-HHh-hcc--CH-------HHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEEE
Confidence 6422 1 111 111 22 23334468999999985433333444333 2334665553
No 429
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.75 E-value=0.13 Score=49.25 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
...++|+|||.|.+|+.+|..+..-|. +|+.+|.... . +. . .. ..+. +.++.||+|+++.
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~--~V~~~~~~~~--~----~~---~-----~~---~~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGM--KVLYAEHKGA--S----VC---R-----EG---YTPFEEVLKQADIVTLHC 205 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCC--EEEEECCCcc--c----cc---c-----cc---cCCHHHHHHhCCEEEEcC
Confidence 455799999999999999988876665 8888886431 0 00 0 01 1245 5689999999986
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~ 178 (350)
.... +++ .++ |. +.+.+..|++++||++--.=+-...+.+. +...++-|.
T Consensus 206 Plt~---~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~~Vde~AL~~a--L~~g~i~gA 255 (314)
T PRK06932 206 PLTE---TTQ-NLI--NA-------ETLALMKPTAFLINTGRGPLVDEQALLDA--LENGKIAGA 255 (314)
T ss_pred CCCh---HHh-ccc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHcCCccEE
Confidence 4221 111 111 22 22333468999999985433333333333 233466555
No 430
>PRK06153 hypothetical protein; Provisional
Probab=94.73 E-value=0.037 Score=53.97 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
..||+|||+|.+|+.++..|+..|+ .+|+|+|-|.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 4699999999999999999999997 6999999863
No 431
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.47 Score=45.55 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=57.1
Q ss_pred hccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH----------H---HHHHhhc
Q 018760 22 FKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML----------D---LQHAAAF 88 (350)
Q Consensus 22 ~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~----------d---l~~~~~~ 88 (350)
.+.+..|+. .-++.||.+||||.||+.++..+..-.-..=+.+-|++.+.++.... + .......
T Consensus 5 ~r~L~aRaa---~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~A 81 (438)
T COG4091 5 ARDLAARAA---EGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADA 81 (438)
T ss_pred HHHHHHHhc---cCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHH
Confidence 333445655 67889999999999999998877754323445667777665542211 0 1111101
Q ss_pred CCCceEEEcCCccc---cCCCCEEEEecCCCc
Q 018760 89 LPRTKILASVDYAV---TAGSDLCIVTAGARQ 117 (350)
Q Consensus 89 ~~~~~v~~t~~~~a---l~~aDiVIi~~g~~~ 117 (350)
....++..|.|.+. ....|+||-+.|.|.
T Consensus 82 i~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 82 IEAGKIAVTDDAELIIANDLIDVIIDATGVPE 113 (438)
T ss_pred HhcCcEEEecchhhhhcCCcceEEEEcCCCcc
Confidence 12456777777543 345688888888774
No 432
>PRK12937 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.65 Score=41.68 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+.+..+|.|+|+ |.+|+.++..|++.|. +++++..+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCC
Confidence 345568999998 9999999999999986 787777644
No 433
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.71 E-value=0.28 Score=38.73 Aligned_cols=64 Identities=14% Similarity=0.294 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA 113 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~ 113 (350)
.+..+|.|||+|.+|..-+..|+..|. +|+++.... + ..+. ..+.. ...+ +++.++|+|+.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA--~v~vis~~~---~----~~~~------~i~~~-~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA--KVTVISPEI---E----FSEG------LIQLI-RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB--EEEEEESSE---H----HHHT------SCEEE-ESS-GGGCTTESEEEE-S
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCch---h----hhhh------HHHHH-hhhHHHHHhhheEEEecC
Confidence 345799999999999999999999994 999999876 1 1111 22333 2234 5799999999885
Q ss_pred C
Q 018760 114 G 114 (350)
Q Consensus 114 g 114 (350)
+
T Consensus 69 ~ 69 (103)
T PF13241_consen 69 D 69 (103)
T ss_dssp S
T ss_pred C
Confidence 4
No 434
>PRK08328 hypothetical protein; Provisional
Probab=94.71 E-value=0.047 Score=49.80 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=32.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
..||+|+|+|.+|+.++..|+..|+ ++++|+|.|.-
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 4689999999999999999999997 69999998763
No 435
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.70 E-value=0.25 Score=42.27 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=48.1
Q ss_pred CCeEEEEc-C-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH---HHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEE
Q 018760 37 HTKISVIG-T-GNVGMAIAQTILTQDFVEELALVDAKADKLRG---EMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCI 110 (350)
Q Consensus 37 ~~KI~IIG-A-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~---~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVI 110 (350)
..||++|| . ++|..+++..+..-|. ++.++-...-...- .....+..... ...++..+.+. +++++||+|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM--EVVLIAPEGLRYPPDPEVLEKAKKNAKK-NGGKITITDDIEEALKGADVVY 78 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS--EEEEESSGGGGGSHHHHHHHHHHHHHHH-HTTEEEEESSHHHHHTT-SEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC--EEEEECCCcccCCCCHHHHHHHHHHHHH-hCCCeEEEeCHHHhcCCCCEEE
Confidence 46999999 5 8999999999988886 78888775522111 11111111100 13466667777 7899999998
Q ss_pred Eec
Q 018760 111 VTA 113 (350)
Q Consensus 111 i~~ 113 (350)
...
T Consensus 79 ~~~ 81 (158)
T PF00185_consen 79 TDR 81 (158)
T ss_dssp EES
T ss_pred EcC
Confidence 874
No 436
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.70 E-value=0.56 Score=44.17 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=43.6
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEEEEecC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLCIVTAG 114 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiVIi~~g 114 (350)
+||+|||+|.+|...+..++...-+.=+.++|+++++.. . ...... ..... .++++. + .+.|+|+++.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~-l--a~A~~~----Gi~~~-~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDG-L--ARAREL----GVKTS-AEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHH-H--HHHHHC----CCCEE-ECCHHHHhcCCCCCEEEECCC
Confidence 699999999999988877776543444567899887532 1 122221 12222 234443 3 46899999864
No 437
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=94.68 E-value=0.2 Score=47.14 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=60.2
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH--H-HHHHHHHHhhcCCCceEEEcCC-cc------ccCCCCE
Q 018760 40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR--G-EMLDLQHAAAFLPRTKILASVD-YA------VTAGSDL 108 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~--~-~~~dl~~~~~~~~~~~v~~t~~-~~------al~~aDi 108 (350)
|.|+|| |.+|++++..|+..|. ..+.++|....... . ...++.+.. . ..+ .+ .+.++|+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~~------~---~~~~~~~~~~~~~~~~~d~ 71 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDIADYM------D---KEDFLAQIMAGDDFGDIEA 71 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhhhhhh------h---HHHHHHHHhcccccCCccE
Confidence 689998 9999999999999884 35777787543111 0 001111110 0 001 11 1237899
Q ss_pred EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
||-+++.+.............|+.....+.+.+.+.+- .+|..|
T Consensus 72 Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred EEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 99998643322223344566788777788888777643 244444
No 438
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.61 Score=41.90 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.++|.|+|+ |.+|..++..|++.|. +|+++++++++++....++.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHH
Confidence 358999998 9999999999999885 89999999887765544443
No 439
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=94.63 E-value=0.16 Score=47.35 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-Hhhc---CCCc---eEEEcCCccccCCCCEEEEecCCCcCcc
Q 018760 48 VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAF---LPRT---KILASVDYAVTAGSDLCIVTAGARQIAG 120 (350)
Q Consensus 48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-~~~~---~~~~---~v~~t~~~~al~~aDiVIi~~g~~~~~g 120 (350)
||..++..|...|. +|.+++++ ++++. +.. .... .... .+..+++.+.+.++|+||++....
T Consensus 2 iG~~~a~~L~~~G~--~V~l~~r~-~~~~~----i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~---- 70 (293)
T TIGR00745 2 VGSLYGAYLARAGH--DVTLLARG-EQLEA----LNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY---- 70 (293)
T ss_pred chHHHHHHHHhCCC--cEEEEecH-HHHHH----HHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch----
Confidence 68899999999884 99999996 44442 221 1100 0111 223344555578999999996321
Q ss_pred ccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHH
Q 018760 121 ESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYV 163 (350)
Q Consensus 121 ~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~ 163 (350)
-..++++.+..+ .++..||.+.|.++....+
T Consensus 71 ------------~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l 102 (293)
T TIGR00745 71 ------------QTEEAAALLLPLIGKNTKVLFLQNGLGHEERL 102 (293)
T ss_pred ------------hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHH
Confidence 112233334433 5778888899998875433
No 440
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.24 Score=50.05 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~ 116 (350)
..||+|+|+|.-|.+.+..|...|. ++++.|.++........+|... ...+....+.+.+.++|+||...|.|
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~d~vV~SpgI~ 80 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADA-----ALLVETEASAQRLAAFDVVVKSPGIS 80 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhc-----CEEEeCCCChHHccCCCEEEECCCCC
Confidence 3589999999999999999999996 8999997653221111234321 11222111234578899999998887
Q ss_pred cCccccHHHHHHhhHHHHHHH
Q 018760 117 QIAGESRLNLLQRNLSLFKAI 137 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i 137 (350)
...- .......++++++.++
T Consensus 81 ~~~p-~~~~a~~~~i~i~~~~ 100 (468)
T PRK04690 81 PYRP-EALAAAARGTPFIGGT 100 (468)
T ss_pred CCCH-HHHHHHHcCCcEEEHH
Confidence 4321 1122234556666443
No 441
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.35 Score=48.29 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g~ 115 (350)
.++|.|+|+|..|.+.+..|...|. +|.++|.++..- ....++... ...++......+ .+.++|+||.+.|.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~l~~~~---~gi~~~~g~~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA--EVAAYDAELKPE--RVAQIGKMF---DGLVFYTGRLKDALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCch--hHHHHhhcc---CCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence 4689999999999999999999995 899999866421 111233211 123343222222 35789999999888
Q ss_pred Cc
Q 018760 116 RQ 117 (350)
Q Consensus 116 ~~ 117 (350)
|.
T Consensus 78 ~~ 79 (445)
T PRK04308 78 SE 79 (445)
T ss_pred CC
Confidence 74
No 442
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.59 E-value=0.56 Score=42.99 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.+++.|+|+ |.+|..++..|+..|. +|++.++++++++....++.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~ 55 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYR 55 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 357899998 8999999999999885 89999998887765544454
No 443
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.59 E-value=0.067 Score=52.51 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC---CCceEEEcCCccccCCCCEEE
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL---PRTKILASVDYAVTAGSDLCI 110 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~---~~~~v~~t~~~~al~~aDiVI 110 (350)
.+++||+|+|| |.+|..+...|..++. .+|.++..+...-+. +.+..... ...++. ..+.++++++|+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~----i~~~~~~l~~~~~~~~~-~~~~~~~~~~DvVf 109 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQS----FGSVFPHLITQDLPNLV-AVKDADFSDVDAVF 109 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCC----chhhCccccCcccccee-cCCHHHhcCCCEEE
Confidence 45679999999 9999999998888853 488888775432211 12111100 011122 11234478999999
Q ss_pred EecC
Q 018760 111 VTAG 114 (350)
Q Consensus 111 i~~g 114 (350)
++.+
T Consensus 110 ~Alp 113 (381)
T PLN02968 110 CCLP 113 (381)
T ss_pred EcCC
Confidence 9864
No 444
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.089 Score=47.93 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=34.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl 82 (350)
.++.|+|+ |.+|..++..|++.|. +|+++++++++++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 37899999 8999999999999885 8999999887665443333
No 445
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.12 Score=46.88 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=32.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
.++.|+|| |.+|..++..|+..|. +|+++|+++++++.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~ 40 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDE 40 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHH
Confidence 46889998 9999999999999885 89999999876653
No 446
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.57 E-value=0.054 Score=52.79 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 32 SPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 32 ~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.|+.+..+|+|||||.+|.++|..|.+.|+ +|+|+|.++
T Consensus 2 ~~~~~~~dViIVGaG~~Gl~~A~~L~~~G~--~v~liE~~~ 40 (388)
T PRK07494 2 LMEKEHTDIAVIGGGPAGLAAAIALARAGA--SVALVAPEP 40 (388)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCC--eEEEEeCCC
Confidence 355566789999999999999999999886 899999865
No 447
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.93 Score=41.60 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=36.2
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
..+|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 458999999 9999999999999885 89999998876654444443
No 448
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.52 E-value=0.09 Score=39.25 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=31.2
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL 75 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l 75 (350)
||+|||+|.+|.-+|..|...+. +++|++..+.-+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~--~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK--EVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS--EEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc--EEEEEeccchhh
Confidence 78999999999999999999884 999999977544
No 449
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.099 Score=48.06 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL 75 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l 75 (350)
..+|.|+|+ |.+|..++..|+..|. +|++.+++++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~ 41 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARA 41 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc
Confidence 357999998 9999999999999985 899999987654
No 450
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=94.49 E-value=0.26 Score=45.47 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc------------------chHHHHHHHHHHhhcCCCceEEEcC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD------------------KLRGEMLDLQHAAAFLPRTKILASV 98 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~------------------~l~~~~~dl~~~~~~~~~~~v~~t~ 98 (350)
..+|.|+|+|.+|+.++..|+..|+ ++|.|+|-+.- |++.....++. ..+..+|....
T Consensus 26 ~SrVLVVG~GGLGsEVAKnLaLAGV-GsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~e---LNP~V~V~~i~ 101 (287)
T PTZ00245 26 HTSVALHGVAGAAAEAAKNLVLAGV-RAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQR---LNPHVSVYDAV 101 (287)
T ss_pred hCeEEEECCCchHHHHHHHHHHcCC-CeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHH---HCCCcEEEEcc
Confidence 4689999999999999999999997 68999997541 22222222222 23566776543
Q ss_pred C-ccccCCCCEEEEec
Q 018760 99 D-YAVTAGSDLCIVTA 113 (350)
Q Consensus 99 ~-~~al~~aDiVIi~~ 113 (350)
. .+...+.++||++.
T Consensus 102 ~rld~~n~fqvvV~~~ 117 (287)
T PTZ00245 102 TKLDGSSGTRVTMAAV 117 (287)
T ss_pred cccCCcCCceEEEEEc
Confidence 3 25567888999885
No 451
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=94.49 E-value=0.38 Score=45.08 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=62.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc--CCCCEE
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT--AGSDLC 109 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al--~~aDiV 109 (350)
||.|+|| |.+|..++..|++.+. +|+++|............+... ........ ++.+ .+ .+.|+|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~d~v 74 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI----TRVTFVEGDLRDRELLDRLFEEHKIDAV 74 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc----cceEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 6899998 9999999999999885 7888886432211111111110 01122111 1111 22 268999
Q ss_pred EEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|.+++....+ .....+.+..|+.....+++.+.+.+... ++++|
T Consensus 75 v~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s 120 (328)
T TIGR01179 75 IHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS 120 (328)
T ss_pred EECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence 9998754221 11233445667777778888777765443 33443
No 452
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.17 Score=44.97 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
+++|.|+|+ |.+|..++..|+++ . +|++++++.+.++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~ 40 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLD 40 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHH
Confidence 358999998 99999999999887 3 8999999876543
No 453
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.44 E-value=0.11 Score=50.63 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=45.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHH-hcCC-CCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEec
Q 018760 38 TKISVIGT-GNVGMAIAQTIL-TQDF-VEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTA 113 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~-~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~ 113 (350)
+||+|+|| |.||+.+...|. +.++ ..+++++..... .+... .+. ....+...++.+++++.|+|+.++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s--~g~~~------~f~~~~~~v~~~~~~~~~~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL--GQAAP------SFGGTTGTLQDAFDIDALKALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh--CCCcC------CCCCCcceEEcCcccccccCCCEEEEcC
Confidence 48999999 999999999888 5554 367888876431 12111 111 123444333335789999999997
Q ss_pred C
Q 018760 114 G 114 (350)
Q Consensus 114 g 114 (350)
|
T Consensus 73 g 73 (366)
T TIGR01745 73 G 73 (366)
T ss_pred C
Confidence 5
No 454
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.77 Score=41.30 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
.++|.|+|| |.+|..++..|+..|. +|+++++++++++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~ 44 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE 44 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH
Confidence 358999999 9999999999999985 8999999876554
No 455
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.39 Score=44.36 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
++|.|+|| |.+|..++..|++.+. +|++.+++++.++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~ 41 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLA 41 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH
Confidence 47899998 9999999999999884 8999999877654
No 456
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.32 Score=43.41 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=71.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---------ccccCCC
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---------YAVTAGS 106 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---------~~al~~a 106 (350)
...|.|.|+ ..+|..+|..|.+.|- +|++..+++++++............ -+++- ..+ .....+-
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN--~VIi~gR~e~~L~e~~~~~p~~~t~--v~Dv~-d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGN--TVIICGRNEERLAEAKAENPEIHTE--VCDVA-DRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCC--EEEEecCcHHHHHHHHhcCcchhee--eeccc-chhhHHHHHHHHHhhCCch
Confidence 357999987 6899999999999884 9999999999887543332222210 01111 111 1234677
Q ss_pred CEEEEecCCCcCcccc-----HH---HH----HHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760 107 DLCIVTAGARQIAGES-----RL---NL----LQRNLSLFKAIIPPLVKYSPDCILLIVANP 156 (350)
Q Consensus 107 DiVIi~~g~~~~~g~~-----r~---~~----~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 156 (350)
+++|..+|..+..+-+ .. +. +...+.+...+.+.+.+ .|+|.||++|--
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~-q~~a~IInVSSG 140 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR-QPEATIINVSSG 140 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCceEEEeccc
Confidence 9999999976543321 11 11 22235556666666665 579999999743
No 457
>PRK05865 hypothetical protein; Provisional
Probab=94.37 E-value=0.18 Score=54.48 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=63.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA 115 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~ 115 (350)
|||.|+|| |.+|+.++..|+..|. +|+++|++.... +.....+ ...++.-..+. ++++++|+||.+++.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~------~~~~v~~-v~gDL~D~~~l~~al~~vD~VVHlAa~ 71 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS------WPSSADF-IAADIRDATAVESAMTGADVVAHCAWV 71 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh------cccCceE-EEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence 68999998 9999999999999885 899999864311 0000000 00111100112 347889999999864
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
.. + ....|+.-...+.+.+.+.+.. .+|++|.+.
T Consensus 72 ~~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 72 RG-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 32 1 2344666666777777765433 466666654
No 458
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.36 E-value=0.3 Score=48.83 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA 115 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~ 115 (350)
.+||+|+|.|.-|.+++..|...|. +|..+|.++.- ...... . . ......+..... .+...++|+||...|.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~--~v~v~D~~~~~-~~~~~~-~-~--~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA--EVTVSDDRPAP-EGLAAQ-P-L--LLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC--eEEEEcCCCCc-cchhhh-h-h--hccCceeecCccchhccccCCEEEECCCC
Confidence 6799999999999999999999995 99999987754 211111 1 0 111233332222 2578999999999887
Q ss_pred CcCccccHHHHHHhhHHHHHHHHhhhhcc--CCCeEEEEEcCCcchHHHHH---HHHhCC
Q 018760 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY--SPDCILLIVANPVDILTYVA---WKLSGL 170 (350)
Q Consensus 116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP~~~~~~~~---~~~sg~ 170 (350)
|...-. -.......++++-++--..+.. +| -+-|.=||-=...|.++ .+.+|+
T Consensus 80 ~~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G~ 137 (448)
T COG0771 80 PPTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAGL 137 (448)
T ss_pred CCCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcCC
Confidence 753211 1111233455555544333432 33 22222356544444443 445565
No 459
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.35 E-value=0.065 Score=52.73 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
|+|+|||||-+|.++|+.|++.+. +|+|+|.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~--~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH--EVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCCc
Confidence 589999999999999999999885 8999999753
No 460
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.30 E-value=0.59 Score=42.54 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~ 84 (350)
.+.++|.|+|+ |.+|..++..|+..|. +++++++++++++....++.+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~ 57 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ 57 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 34578999999 8999999999999985 899999988777655555543
No 461
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.29 E-value=0.84 Score=41.18 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=48.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT 103 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al 103 (350)
++|.|+|+ |.+|+.++..|+..|. +|+++++++++.+....++.... ....+... ++.+ .+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG---GSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 47899998 9999999999999885 89999998876654333333211 11222111 1111 24
Q ss_pred CCCCEEEEecCCC
Q 018760 104 AGSDLCIVTAGAR 116 (350)
Q Consensus 104 ~~aDiVIi~~g~~ 116 (350)
...|+||.+++..
T Consensus 77 ~~~d~vi~~a~~~ 89 (255)
T TIGR01963 77 GGLDILVNNAGIQ 89 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5689999988753
No 462
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.29 E-value=0.35 Score=48.05 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=55.6
Q ss_pred eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ 117 (350)
Q Consensus 39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~ 117 (350)
||.|||.|..|.++|..|...|. +|...|..+.. .......++... ..++....+.+.+.++|+||...+.|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~~----gi~~~~g~~~~~~~~~d~vv~sp~i~~ 74 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNE----GSVLHTGLHLEDLNNADLVVKSPGIPP 74 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhcc----CcEEEecCchHHhccCCEEEECCCCCC
Confidence 68999999999999999999996 89999986542 111001121111 234433333456889999999988864
Q ss_pred CccccHHHHHHhhHHHHHH
Q 018760 118 IAGESRLNLLQRNLSLFKA 136 (350)
Q Consensus 118 ~~g~~r~~~~~~n~~i~~~ 136 (350)
..- .......++++++.+
T Consensus 75 ~~p-~~~~a~~~~i~i~~~ 92 (433)
T TIGR01087 75 DHP-LVQAAAKRGIPVVGD 92 (433)
T ss_pred CCH-HHHHHHHCCCcEEEH
Confidence 321 122223345555544
No 463
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.057 Score=49.10 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=34.5
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
|||..||.|.||..++..|+..+. +++-||+|++..+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh--dvV~yD~n~~av~~ 38 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH--DVVGYDVNQTAVEE 38 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC--eEEEEcCCHHHHHH
Confidence 689999999999999999999995 99999999976653
No 464
>PLN02686 cinnamoyl-CoA reductase
Probab=94.21 E-value=0.2 Score=48.73 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--h-cCCCceEEEc--CCc----cccC
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--A-FLPRTKILAS--VDY----AVTA 104 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~-~~~~~~v~~t--~~~----~al~ 104 (350)
.++++|.|+|+ |.+|++++..|++.|. +|+++..+.+.++.. ..+.... . ......+... +|. ++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 34578999998 9999999999999985 888877665544321 1221100 0 0001222111 122 3477
Q ss_pred CCCEEEEecCCCcCccc--cHHHHHHhhHHHHHHHHhhhhcc
Q 018760 105 GSDLCIVTAGARQIAGE--SRLNLLQRNLSLFKAIIPPLVKY 144 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~--~r~~~~~~n~~i~~~i~~~i~~~ 144 (350)
++|.|+-+++.....+. ....+...|+.-.+.+.+.+.+.
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 89999987654211121 11233445677777777777664
No 465
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.94 Score=41.00 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDL 82 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl 82 (350)
.++|.|+|+ |.+|+.++..|++.|. +|.+. .+++++++....++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~ 51 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREI 51 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHH
Confidence 368999998 9999999999999885 67664 56665554433333
No 466
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.095 Score=47.70 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK 74 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~ 74 (350)
+.+++.|+|+ |.+|..++..|+..+. +|+++|+++++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~ 42 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh
Confidence 3468899998 8999999999999885 89999998753
No 467
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.15 E-value=1 Score=40.95 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
..+|.|+|| |.+|..++..|++.|. ++++.+++++++ ....++.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~-~~~~~~~ 51 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDD-EFAEELR 51 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhH-HHHHHHH
Confidence 358999998 8999999999999985 789999988765 3334443
No 468
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=1.9 Score=42.62 Aligned_cols=132 Identities=17% Similarity=0.273 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCChhHHHHHHH-----HHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----ccc--
Q 018760 35 KRHTKISVIGTGNVGMAIAQT-----ILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVT-- 103 (350)
Q Consensus 35 ~~~~KI~IIGAG~vG~~~a~~-----l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al-- 103 (350)
.++.+|+++|-+.+|-+.... +...+ ..|.++|.|..+.. ....+...... ....+....+. +++
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~Ria-AvEQLk~yae~-lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIG-TVQQLQDYVKT-IGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchH-HHHHHHHHhhh-cCCcEEecCCHHHHHHHHHH
Confidence 345789999998888876432 33334 37999999988754 33344432111 12233322221 222
Q ss_pred -C---CCCEEEEe-cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC---CcchHHHHHHHHhCCCCCcE
Q 018760 104 -A---GSDLCIVT-AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN---PVDILTYVAWKLSGLPSNRV 175 (350)
Q Consensus 104 -~---~aDiVIi~-~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN---P~~~~~~~~~~~sg~~~~rv 175 (350)
+ +.|+|++- +|... ++...+.++.+.+....|+.++++++- +.+ +...+.++..++...+
T Consensus 315 lk~~~~~DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~idgl 382 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNY-----------RASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIHIDGI 382 (436)
T ss_pred HHhccCCCEEEEeCccccC-----------cCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCCCCEE
Confidence 3 57999994 44322 344556667777777778877666642 222 3445555555666677
Q ss_pred eeecCCccH
Q 018760 176 IGSGTNLDS 184 (350)
Q Consensus 176 iG~g~~ld~ 184 (350)
| + |-+|.
T Consensus 383 I-~-TKLDE 389 (436)
T PRK11889 383 V-F-TKFDE 389 (436)
T ss_pred E-E-EcccC
Confidence 6 4 55554
No 469
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.12 E-value=1 Score=40.99 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=32.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG 77 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~ 77 (350)
+.++|.|+|| |.+|..++..|++.|. +|++++++ ++++.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~-~~~~~ 53 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG-TNWDE 53 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC-cHHHH
Confidence 3468999999 8999999999999985 89999987 44443
No 470
>PRK08264 short chain dehydrogenase; Validated
Probab=94.11 E-value=0.89 Score=40.70 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR 76 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~ 76 (350)
+.++|.|+|+ |.+|..++..|++.|. .+|++++++.++++
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh
Confidence 4468999998 9999999999999884 37999999876554
No 471
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.08 E-value=0.94 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
+++|.|+|| |.+|..++..|++.+. ++++.....
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 458999999 9999999999999986 666655543
No 472
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=94.07 E-value=2.1 Score=38.88 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=62.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----------- 101 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----------- 101 (350)
+...+.|+|+ |.+|..++..|++.|. +|+++|+++. +....++.... ........ +|.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEP--TETIEQVTALG---RRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcch--HHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3457889998 8999999999999985 8888887542 22223333211 11111111 1111
Q ss_pred ccCCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760 102 VTAGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 102 al~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
.+...|++|.++|.... + ..+. ...+.-|. .+.+.+.+.+.+..+.+.++++|.
T Consensus 82 ~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 82 EFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 12357999999886421 1 1111 22233343 344455555555445576777654
No 473
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.07 E-value=0.077 Score=52.20 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=30.3
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.||+|||||-+|.++|+.|++.+. +|+++|...
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~--~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY--QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 499999999999999999999885 899999875
No 474
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.03 E-value=0.18 Score=53.07 Aligned_cols=119 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCCcccc---CCCCEE
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVDYAVT---AGSDLC 109 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al---~~aDiV 109 (350)
+++||.|+|| |.+|++++..|+..+...+|+.+|... +.+.................++.-....+.+ .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Q ss_pred EEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 110 IVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 110 Ii~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
|-+++...... ....++...|+.-...+.+.+++.+.-..+|.+|
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S 131 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS 131 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
No 475
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.03 E-value=0.14 Score=48.60 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=44.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc------ccCCCCEE
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA------VTAGSDLC 109 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~------al~~aDiV 109 (350)
+++||+|||+|.+|..++..+...+.+.=+.++|+++++. +. ...... ..... .++++ ++.+.|+|
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~-gl--a~A~~~----Gi~~~-~~~ie~LL~~~~~~dIDiV 74 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESD-GL--ARARRL----GVATS-AEGIDGLLAMPEFDDIDIV 74 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhH-HH--HHHHHc----CCCcc-cCCHHHHHhCcCCCCCCEE
Confidence 4589999999999999888777655444456789988632 11 112111 11111 12332 23679999
Q ss_pred EEecC
Q 018760 110 IVTAG 114 (350)
Q Consensus 110 Ii~~g 114 (350)
+++.+
T Consensus 75 f~AT~ 79 (302)
T PRK08300 75 FDATS 79 (302)
T ss_pred EECCC
Confidence 99864
No 476
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.99 E-value=0.18 Score=48.79 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH-HHh-hc------CCCceEEEcCCcc-ccCCCC
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ-HAA-AF------LPRTKILASVDYA-VTAGSD 107 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~-~~~-~~------~~~~~v~~t~~~~-al~~aD 107 (350)
++||+|+|+|.||+.++..+...+-+.=+.+.|.+++.....+.... +.. .+ .....+....+.+ .+.++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 47999999999999999888776533334556655433322111100 000 00 0011233344453 467899
Q ss_pred EEEEecC
Q 018760 108 LCIVTAG 114 (350)
Q Consensus 108 iVIi~~g 114 (350)
+||.+.+
T Consensus 81 VVIdaT~ 87 (341)
T PRK04207 81 IVVDATP 87 (341)
T ss_pred EEEECCC
Confidence 9999864
No 477
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.095 Score=47.51 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
++|.|+|+ |.+|+.++..|++.|. +|+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 47999998 9999999999999985 899999876
No 478
>PRK12743 oxidoreductase; Provisional
Probab=93.94 E-value=0.75 Score=41.91 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=61.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V 102 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a 102 (350)
.+|.|+|| |.+|..++..|++.|. +|++++. +.+.++....++.... ....+... ++.+ .
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 47889999 8999999999999985 8877754 5554544334443211 11222211 1211 1
Q ss_pred cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760 103 TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN 155 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 155 (350)
+...|+||.++|..... ..+. ...+..| ..+++...+.+.+....+.+|++|.
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 23579999998764211 1111 1223333 3344444455544333456666664
No 479
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=93.94 E-value=0.34 Score=45.43 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=61.4
Q ss_pred EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-----cCCCCEEEEec
Q 018760 40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-----TAGSDLCIVTA 113 (350)
Q Consensus 40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-----l~~aDiVIi~~ 113 (350)
|.|+|| |.+|+.++..|+..+. .+|+++|....... ...+.... .. ..+......+. +.++|+||.++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~--~~~~~~~~-~~--~d~~~~~~~~~~~~~~~~~~D~vvh~A 74 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHK--FLNLADLV-IA--DYIDKEDFLDRLEKGAFGKIEAIFHQG 74 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchh--hhhhhhee-ee--ccCcchhHHHHHHhhccCCCCEEEECc
Confidence 578998 9999999999999884 37888887543111 01111100 00 01100001122 25799999998
Q ss_pred CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760 114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154 (350)
Q Consensus 114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t 154 (350)
+...............|......+.+.+.+... .+|.+|
T Consensus 75 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 75 ACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 754222223344556777777888887777643 255554
No 480
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.8 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
.++|.|+|| |.+|..++..|++.|. +|++++++++
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~ 81 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEH 81 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence 457999998 8999999999999985 8999999764
No 481
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=93.91 E-value=0.31 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=24.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEE-EeCCc
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELAL-VDAKA 72 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L-~D~~~ 72 (350)
||+|+|+ |.+|..++..+....-+ ++.- ++++.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~ 35 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASAR 35 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechh
Confidence 6899997 89999999888886433 4444 46554
No 482
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=93.90 E-value=0.61 Score=51.38 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=51.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
Q Consensus 37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t 97 (350)
..+|.|+|+|.+|..++..|+..|+ +.|+|+|-+. .|+++....|+... +..+|...
T Consensus 24 ~s~VLIiG~gGLG~EiaKnL~laGV-g~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN---p~V~V~~~ 99 (1008)
T TIGR01408 24 KSNVLISGMGGLGLEIAKNLVLAGV-KSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN---PYVHVSSS 99 (1008)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC---CCceEEEe
Confidence 4589999999999999999999997 6899999643 23333333344332 44555544
Q ss_pred CC-c--cccCCCCEEEEec
Q 018760 98 VD-Y--AVTAGSDLCIVTA 113 (350)
Q Consensus 98 ~~-~--~al~~aDiVIi~~ 113 (350)
+. . +-+++.|+||.+.
T Consensus 100 ~~~l~~e~l~~fdvVV~t~ 118 (1008)
T TIGR01408 100 SVPFNEEFLDKFQCVVLTE 118 (1008)
T ss_pred cccCCHHHHcCCCEEEECC
Confidence 32 2 4588999999984
No 483
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.87 Score=47.65 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=60.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC------------ccccC
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD------------YAVTA 104 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~------------~~al~ 104 (350)
|||.|+|| |.+|++++..|+......+|++++++..... ...+...... ...++.. .| .+.++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~--~~~~~~~~~~-~~v~~~~-~Dl~~~~~~~~~~~~~~l~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSR--LEALAAYWGA-DRVVPLV-GDLTEPGLGLSEADIAELG 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHH--HHHHHHhcCC-CcEEEEe-cccCCccCCcCHHHHHHhc
Confidence 58999999 9999999999985322248999999653211 1122111100 1112211 11 12347
Q ss_pred CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC
Q 018760 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS 145 (350)
Q Consensus 105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~ 145 (350)
++|+||.+++... ......+....|+.-.+.+++.+.+..
T Consensus 77 ~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~ 116 (657)
T PRK07201 77 DIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQ 116 (657)
T ss_pred CCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcC
Confidence 8999999987432 122334455667777777777777653
No 484
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.22 Score=46.77 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=53.7
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT 112 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~ 112 (350)
....+|+|||. |.||.+++..|+..+. .|+++... |.+. +.+++||+||.+
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-------------------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-------------------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-------------------------CCCHHHHHhhCCEEEEe
Confidence 34579999999 9999999999999885 77776211 1133 457899999999
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CC
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NP 156 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP 156 (350)
+|.|.- -+.++ ..|.+++|.++ |+
T Consensus 209 vg~~~~---v~~~~-----------------ik~GavVIDvgin~ 233 (284)
T PRK14179 209 IGRGHF---VTKEF-----------------VKEGAVVIDVGMNR 233 (284)
T ss_pred cCcccc---CCHHH-----------------ccCCcEEEEeccee
Confidence 986531 11111 46889988886 65
No 485
>PRK06128 oxidoreductase; Provisional
Probab=93.88 E-value=1.5 Score=41.17 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=29.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
++|.|+|+ |.+|..++..|+..|. +|++.+++.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~ 90 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGA--DIALNYLPEE 90 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcc
Confidence 57999998 9999999999999985 8888877543
No 486
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.86 E-value=1.3 Score=35.67 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=58.7
Q ss_pred CeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEe
Q 018760 38 TKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVT 112 (350)
Q Consensus 38 ~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~ 112 (350)
++|+|||+ ++.|..+...|.+.|. +|+.++...+.+.+ .+. ..+.++. ...|+++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~--~v~~Vnp~~~~i~G--------------~~~--y~sl~e~p~~iDlavv~ 62 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY--EVYPVNPKGGEILG--------------IKC--YPSLAEIPEPIDLAVVC 62 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEETT--------------EE---BSSGGGCSST-SEEEE-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC--EEEEECCCceEECc--------------EEe--eccccCCCCCCCEEEEE
Confidence 47999996 5778888888888774 89999887654432 122 2344434 789999998
Q ss_pred cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN 181 (350)
Q Consensus 113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ 181 (350)
. +.....++.+++.+.+..++++.-+--..-+...+ +..|+ +++|-.|.
T Consensus 63 ~----------------~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a-~~~gi---~vigp~C~ 111 (116)
T PF13380_consen 63 V----------------PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAA-REAGI---RVIGPNCL 111 (116)
T ss_dssp S-----------------HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHH-HHTT----EEEESS-H
T ss_pred c----------------CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHH-HHcCC---EEEeCCcc
Confidence 5 23444555566666666775555551111122222 33465 78877664
No 487
>PRK12747 short chain dehydrogenase; Provisional
Probab=93.84 E-value=1.4 Score=39.98 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHH
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQ 83 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~ 83 (350)
.+++.|+|+ |.+|.+++..|+..|. +|++.+ .++++++....++.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQ 50 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHH
Confidence 357889998 8999999999999985 788875 45555554444443
No 488
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.7 Score=42.14 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
.+++.|+|+ |.+|..++..|+..|. +|++++++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~ 41 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPE 41 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence 358899998 9999999999999985 8999999864
No 489
>PRK06847 hypothetical protein; Provisional
Probab=93.80 E-value=0.098 Score=50.63 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
++.+|+|||||..|.++|..|.+.|+ +++++|.+++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~--~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI--AVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCC
Confidence 46799999999999999999999986 8999998653
No 490
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.79 E-value=0.19 Score=45.68 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ 83 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~ 83 (350)
.+.++|.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALR 56 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHH
Confidence 44578999999 8999999999999885 89999999877765555554
No 491
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.77 E-value=0.097 Score=51.11 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
++++|+|||||-.|.++|..|...|+ +|+++|..++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~--~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI--KVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC--cEEEEeeCcc
Confidence 45799999999999999999999997 8999998754
No 492
>PRK06753 hypothetical protein; Provisional
Probab=93.77 E-value=0.09 Score=50.88 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
|||+|||||..|.++|..|.+.|+ ++++++.++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~--~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH--EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCc
Confidence 689999999999999999999997 8999998763
No 493
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.69 E-value=1.7 Score=39.50 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA 72 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~ 72 (350)
.+++.|+|+ |.+|..++..|++.|. +|+++|+++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 357899998 9999999999999985 899999975
No 494
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=93.69 E-value=0.62 Score=44.60 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=57.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHH-HHhh-cCCCceEEEc--CCc----cccC--C
Q 018760 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQ-HAAA-FLPRTKILAS--VDY----AVTA--G 105 (350)
Q Consensus 38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~-~~~~-~~~~~~v~~t--~~~----~al~--~ 105 (350)
+||.|+|| |.+|++++..|+..|. +|+++|++.+... .....+. +... ......+... +|. +.++ +
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 48999998 9999999999999985 8999998754211 0111111 0000 0011222211 122 2345 3
Q ss_pred CCEEEEecCCCcCc-c-ccHHHHHHhhHHHHHHHHhhhhccC
Q 018760 106 SDLCIVTAGARQIA-G-ESRLNLLQRNLSLFKAIIPPLVKYS 145 (350)
Q Consensus 106 aDiVIi~~g~~~~~-g-~~r~~~~~~n~~i~~~i~~~i~~~~ 145 (350)
.|+||-+++..... . ......+..|+.-...+.+.+.+.+
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~ 120 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 69999998753221 1 1122333445555566666666543
No 495
>PRK06114 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.41 Score=43.63 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHH
Q 018760 36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQ 83 (350)
Q Consensus 36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~ 83 (350)
+.+++.|+|+ |.+|..++..|++.|. +|++.|++.+ .++....++.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~ 54 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIE 54 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHH
Confidence 3457889998 8999999999999985 8999998754 3443334444
No 496
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.65 E-value=0.65 Score=39.02 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=65.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC--ccchHHHHHHHHHHhhcCCCceEEEc--CCc-------c----c
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLPRTKILAS--VDY-------A----V 102 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~--~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~----a 102 (350)
.+.|+|| +.+|..++..|++.+- ..|++++++ .++++.....+.... ....+... ++. + .
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 4778898 8999999999999953 478999998 444444444444211 11122211 111 1 2
Q ss_pred cCCCCEEEEecCCCcCcc--ccH----HHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760 103 TAGSDLCIVTAGARQIAG--ESR----LNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157 (350)
Q Consensus 103 l~~aDiVIi~~g~~~~~g--~~r----~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~ 157 (350)
....|++|.++|...... ... ...+.-|+.-...+.+.+.. .+.+.+|++|-..
T Consensus 78 ~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 78 FGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp HSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred cccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 347899999988755211 111 22344454444444444444 5577788887443
No 497
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.65 E-value=0.23 Score=48.10 Aligned_cols=72 Identities=22% Similarity=0.456 Sum_probs=45.8
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760 35 KRHTKISVIGT-GNVGMAIAQTILTQD-F-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV 111 (350)
Q Consensus 35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi 111 (350)
.+.+||+|||| |.+|..+...|.... + +.+|.++..... .+....+.. ....+.. .+.++++++|+|++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s--aGk~~~~~~-----~~l~v~~-~~~~~~~~~Divf~ 74 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS--AGKTVQFKG-----REIIIQE-AKINSFEGVDIAFF 74 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc--CCCCeeeCC-----cceEEEe-CCHHHhcCCCEEEE
Confidence 45579999999 999999999888644 3 346888766432 111111110 1223332 24456789999999
Q ss_pred ecC
Q 018760 112 TAG 114 (350)
Q Consensus 112 ~~g 114 (350)
+.+
T Consensus 75 a~~ 77 (347)
T PRK06728 75 SAG 77 (347)
T ss_pred CCC
Confidence 865
No 498
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.56 Score=47.63 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=55.7
Q ss_pred CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCC
Q 018760 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGAR 116 (350)
Q Consensus 38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~ 116 (350)
.||.|+|+|..|.+.+..|...|. +|...|.++++++ .+... ...+....+ .+.++++|+||.+.|.|
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~--~v~~~D~~~~~~~----~l~~~-----g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALR----PHAER-----GVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHH----HHHhC-----CCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 489999999999999988888885 8999997654332 22221 123332222 24578899999999887
Q ss_pred cCccccHHHHHHhhHHHHHHHH
Q 018760 117 QIAGESRLNLLQRNLSLFKAII 138 (350)
Q Consensus 117 ~~~g~~r~~~~~~n~~i~~~i~ 138 (350)
...- .....-.++++++.++-
T Consensus 82 ~~~p-~~~~a~~~gi~v~~~ie 102 (488)
T PRK03369 82 PTAP-VLAAAAAAGVPIWGDVE 102 (488)
T ss_pred CCCH-HHHHHHHCCCcEeeHHH
Confidence 5321 11111234556655443
No 499
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=93.63 E-value=1 Score=42.87 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=61.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH---HHHHHHHHHhh----cC-CCceEEEcCC----------
Q 018760 39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR---GEMLDLQHAAA----FL-PRTKILASVD---------- 99 (350)
Q Consensus 39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~---~~~~dl~~~~~----~~-~~~~v~~t~~---------- 99 (350)
+|.|+|| |.+|++++..|+..+...+|+++.++.+... .....+..... .. ....+.. .|
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVA-GDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEe-CCcCcccCCcCH
Confidence 5789999 9999999999999874347999988765322 11111111100 00 1222221 12
Q ss_pred --c-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760 100 --Y-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDC 148 (350)
Q Consensus 100 --~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a 148 (350)
+ +..+++|+||.+++... ......++...|+.-...+.+.+.+.....
T Consensus 80 ~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~ 130 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP 130 (367)
T ss_pred HHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence 1 22468999999876432 112233445567766677777666654443
No 500
>PRK08278 short chain dehydrogenase; Provisional
Probab=93.62 E-value=1.7 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760 37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD 73 (350)
Q Consensus 37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~ 73 (350)
.+++.|+|| |.+|..++..|++.|. +|++++++.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 41 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAE 41 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccc
Confidence 357899998 9999999999999985 8999998764
Done!