RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018760
(350 letters)
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 483 bits (1246), Expect = e-173
Identities = 177/325 (54%), Positives = 232/325 (71%), Gaps = 2/325 (0%)
Query: 25 INHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84
I + + KI+V+G G VGMA A +IL +D +ELALVD DKL+GEM+DLQH
Sbjct: 8 IVNLLKEEQVPQ-NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH 66
Query: 85 AAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144
+ FL KI++S DY+VTA S L I+TAGARQ GESRLNL+QRN+++FK IIP +VKY
Sbjct: 67 GSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126
Query: 145 SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQA 204
SP C LLIV+NPVDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+
Sbjct: 127 SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 205 YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY 264
+++GEHGDSSV +WS ++V GV + S + +KE + +HK+VVDSAYEVI LKGY
Sbjct: 187 WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGY 246
Query: 265 TSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI 324
TSWAIG S A+LA SI+++ R++HP+S + KG YGI DVFLS+P LG+ G+ V +
Sbjct: 247 TSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKV 305
Query: 325 HLNQEESHRLRNSAKTILEVQSQLG 349
L +E RL+ SA T+ +Q +L
Sbjct: 306 TLTPDEEARLKKSADTLWGIQKELQ 330
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 476 bits (1228), Expect = e-170
Identities = 130/317 (41%), Positives = 199/317 (62%), Gaps = 3/317 (0%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
T + TK++VIG G VG +A + E+ L D +++ E+LD+QH ++F P
Sbjct: 4 TVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVS 63
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
I S D + +D+ ++TAG RQ G+SRL L+ +++ KAI+P LVK +P+ I +++
Sbjct: 64 IDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDI T+VA KL+GLP N++ GSGTNLDS+R RFL+A VN ++V AYI GEHGDS
Sbjct: 124 TNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDS 183
Query: 214 SVALWSSISVGGVPILSFLEKQ-QIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
V LW S ++GGVP+ + + + E IH+EV ++AY++I+ KG T++AIG S
Sbjct: 184 EVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMS 243
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
++ +++ D +I PVS + K F+GI D+ +S+P L R GV N ++ +E
Sbjct: 244 GVDIIEAVLHDTNRILPVSSMLKDFHGIS--DICMSVPTLLNRQGVNNTINTPVSDKELA 301
Query: 333 RLRNSAKTILEVQSQLG 349
L+ SA+T+ E +Q G
Sbjct: 302 ALKRSAETLKETAAQFG 318
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 475 bits (1225), Expect = e-170
Identities = 113/315 (35%), Positives = 186/315 (59%), Gaps = 3/315 (0%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
K +K+++IG G VG + A T+ + EL L+D +K GE +D+ H F+ +
Sbjct: 4 VKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS 63
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
+ A DY+ D+ +VTAGA + GE+RL+L ++N+ + K + ++KY ++L+V
Sbjct: 64 LYAG-DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
+NPVDI+TY+ K SGLP +VIGSGT LDS RFR+LL++ L V+ ++V YI+GEHGDS
Sbjct: 123 SNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDS 182
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ LWS + G I +++ + + +E + I ++V + +I KG T + I S
Sbjct: 183 QLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSI 242
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
+ +++++Q I V + G YGI+ DV +SLP+ + GV V +L EE
Sbjct: 243 NTIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEA 300
Query: 334 LRNSAKTILEVQSQL 348
LR SA+ + +V +++
Sbjct: 301 LRFSAEQVKKVLNEV 315
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 473 bits (1220), Expect = e-169
Identities = 122/312 (39%), Positives = 192/312 (61%), Gaps = 3/312 (0%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
K K+++IG G VG + A ++ Q +EL ++D +K G+++DL H AF P+
Sbjct: 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
+ Y +D+ + AGA Q GE+RL L+++NL +FK I+ ++ D I L+
Sbjct: 62 KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDILTY WK SGLP RVIGSGT LDS+RFRF+L+++ Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDT 181
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ +WS +VGGVP+ +EK AY++E L+ I +V ++AY +I KG T + + S
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++I+ ++ I VS G YG D DV++ +PA + RGG+ G+T ++LN++E +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298
Query: 334 LRNSAKTILEVQ 345
+SA + +
Sbjct: 299 FLHSAGVLKNIL 310
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 471 bits (1216), Expect = e-169
Identities = 117/314 (37%), Positives = 181/314 (57%), Gaps = 3/314 (0%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
++ VIG G VG + ++ Q +E+ L+DA K G+ +D H F P+
Sbjct: 3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPV 62
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
+ DY +DL ++ AGA Q GE+RL+L+ +N+++F++I+ ++ + L+
Sbjct: 63 DIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDILTY WK SGLP RVIGSGT LD++RFRFLL ++ V Q+V AYI+GEHGD+
Sbjct: 123 TNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDT 182
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ +WS +G +PI +E + ++ LE I V D+AY++I KG T + I
Sbjct: 183 ELPVWSQAYIGVMPIRKLVESKGE-EAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGL 241
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + R+I+ ++ I VS G YG DV++ +PA + R G+ V I LN +E +R
Sbjct: 242 ARVTRAILHNENAILTVSAYLDGLYGER--DVYIGVPAVINRNGIREVIEIELNDDEKNR 299
Query: 334 LRNSAKTILEVQSQ 347
+SA T+ V ++
Sbjct: 300 FHHSAATLKSVLAR 313
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 471 bits (1214), Expect = e-168
Identities = 125/311 (40%), Positives = 176/311 (56%), Gaps = 3/311 (0%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
K+ ++G+G VG A A + E+ LVD + D+ HA F + A
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
Y G+ ++ AG Q GE+RL LL RN +F ++P +++ +P+ +LL+ NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
++T VA+ LSGLP RV+GSGT LD++RFR LLA++L V Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
SS VGGVP+L F E + A E I + V +AY +I KG T + IG A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+I+ D++ ++ VS G+ +V LSLP LG GGV G L+ EE LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGVL--EVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSA 298
Query: 339 KTILEVQSQLG 349
+ + E LG
Sbjct: 299 EILKEAAFALG 309
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 471 bits (1215), Expect = e-168
Identities = 119/315 (37%), Positives = 193/315 (61%), Gaps = 4/315 (1%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
+ K+ +IG G VG + A +++ Q V+EL ++D +K+RG+++DL+HA + P T
Sbjct: 3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTV 62
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
+ + +Y+ +DL ++ AGA Q GE+RL+L+ +NL +FK+I+ ++ D I L+
Sbjct: 63 RVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA 122
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
NPVDIL Y WK SGLP RVIGSGT LDS+RFR LL++ DV + V A I+GEHGD+
Sbjct: 123 TNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDT 182
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
+ +WS ++ G P+ + LE++ K +E I + D+AY++I KG T + +
Sbjct: 183 ELPVWSHANIAGQPLKTLLEQRPE--GKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + +I R++ + VS L +G Y + DV++ +PA + R G+ V I LN EE +
Sbjct: 241 ARITEAIFRNEDAVLTVSALLEGEYEEE--DVYIGVPAVINRNGIRNVVEIPLNDEEQSK 298
Query: 334 LRNSAKTILEVQSQL 348
+SAKT+ ++ ++
Sbjct: 299 FAHSAKTLKDIMAEA 313
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 470 bits (1212), Expect = e-168
Identities = 119/315 (37%), Positives = 198/315 (62%), Gaps = 4/315 (1%)
Query: 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT 92
K H K+ ++G G VG + A ++ Q +E+ +VD DK +G+ +DL +A F
Sbjct: 5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPK 64
Query: 93 KILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
KI ++ +Y+ +DL ++TAGA Q GE+RL+L+ +NL + K+I+ P+V + I L+
Sbjct: 65 KIYSA-EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
ANPVDILTY WKLSG P NRV+GSGT+LD++RFR +A+ ++V+A+ V AYI+GEHGD
Sbjct: 124 AANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
+ +WS ++GGV I +++ +++ L + ++V D+AYE+I LKG T + I +
Sbjct: 184 TEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
A ++++I+ D+ + P+SV G YG++ D+++ PA + R G+ + I L E
Sbjct: 243 LARISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEE 300
Query: 333 RLRNSAKTILEVQSQ 347
++ SA + +V +
Sbjct: 301 SMQKSASQLKKVLTD 315
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 468 bits (1206), Expect = e-167
Identities = 117/310 (37%), Positives = 181/310 (58%), Gaps = 4/310 (1%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
KI ++G G VG + A +L + F E+ L+D + G+ LDL H F R I A
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
DYA GSD+ IV AG Q GE+RL LL RN + K I + KY+PD I+++V NPVD
Sbjct: 61 DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+LTY K SG+ +V GSGT LD++R R L+A H + + V Y++GEHGDS V +W
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
S +GG+P+ + + Q + + LE+ ++ +AYE+I KG T +AI + A++
Sbjct: 181 SGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
SI D++++ +SV + + G+ D+ +S+P LG+ GV + ++LN+EE R SA
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGVERILELNLNEEELEAFRKSA 297
Query: 339 KTILEVQSQL 348
+ +++
Sbjct: 298 SILKNAINEI 307
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 463 bits (1195), Expect = e-165
Identities = 118/312 (37%), Positives = 188/312 (60%), Gaps = 5/312 (1%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
H K+ ++G G VG + A + Q EE +VD D+ +G+ LDL+ A AF KI
Sbjct: 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
+ +Y+ +DL ++TAGA Q GESRL+L+ +NL++ +I+ P+V D I L+ A
Sbjct: 63 YSG-EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVDILTY WK SG P RVIGSGT+LDSSR R L +V+ + V AYI+GEHGDS
Sbjct: 122 NPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSE 181
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
A +S+ ++G P+ ++Q + + L + V + AY++I+LKG T + IG +
Sbjct: 182 FAAYSTATIGTRPVRDVAKEQGV--SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALM 239
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
++++I+RD+ + PV G YG++ D+++ PA +G G+ + L+ +E ++
Sbjct: 240 RISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKM 297
Query: 335 RNSAKTILEVQS 346
++SA T+ +V +
Sbjct: 298 QDSAATLKKVLN 309
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 449 bits (1157), Expect = e-160
Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 9/312 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
K+ V+GTG VG A ++ + EL LVD D+ + E D+ HAA T++
Sbjct: 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG- 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
++ A + + I+TAGA Q GESRL+LL++N +F+ ++P + + +PD +LL+ +NPVD
Sbjct: 61 GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+LT +A +L+ P VIGSGT LDS+RFR L+A H V+ Y++GEHGDS V W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
SS V G+P+ F++ Q + + ++ I + ++A +I K T + IG + A +
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
+++RD+R + VS + V LSLP +GR GVL + L +E +L SA
Sbjct: 239 AVLRDRRAVLTVSAPTPEY------GVSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSA 292
Query: 339 KTILEVQSQLGI 350
+ + QLG+
Sbjct: 293 GVLRGFKQQLGL 304
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 439 bits (1132), Expect = e-156
Identities = 90/314 (28%), Positives = 162/314 (51%), Gaps = 15/314 (4%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
KI +IG GNVG A+A ++ Q ++ +DA K++ + +D Q A A L +
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62
Query: 99 DYAVTAGSDLCIVTAG----ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
D+A A +D+ I T G + R L+ S+ +++ L + +L++++
Sbjct: 63 DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVD++T + ++G P+++VIG+GT LD++R + + + D++ + V Y +GEHG+S
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQ 182
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
WS++ V G PI++ + L +I +E + V++ KGYTS+ + SA
Sbjct: 183 FVAWSTVRVMGQPIVTLADA-----GDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAI 237
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
+A++++ D VS ++LS PA +GR GVL T + L +E +L
Sbjct: 238 RIAKAVMADAHAELVVS----NRRDDM--GMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291
Query: 335 RNSAKTILEVQSQL 348
S I + ++
Sbjct: 292 LQSRDYIQQRFDEI 305
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 436 bits (1123), Expect = e-155
Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 15/314 (4%)
Query: 38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKI 94
TK+SV+G G VG A I +D +E+ VD K D G+ D H A+ T++
Sbjct: 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV 60
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
Y TAGSD+ ++TAG + G++R++L N + + I L +++ D I L +
Sbjct: 61 RQG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NPVD+L ++ +VIG G LDS+RFR++L++ D Q+V+ I+GEHGD+
Sbjct: 120 NPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQ 179
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
V ++S +SV G + + E + ++ +SA +VI KG T W A
Sbjct: 180 VPVFSKVSVDGTDPE---------FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
++ +I+ D ++ P SV +G +G + D +P LG GV + L+ E +
Sbjct: 231 HMVEAILHDTGEVLPASVKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLM 288
Query: 335 RNSAKTILEVQSQL 348
++A+ + + ++
Sbjct: 289 ADAAEKLSDQYDKI 302
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 428 bits (1103), Expect = e-151
Identities = 150/350 (42%), Positives = 211/350 (60%), Gaps = 40/350 (11%)
Query: 18 TQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG 77
T K I H A + + KI+V+G VGMA A ++L +D +E+ALVD DKL+G
Sbjct: 2 TALKDKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKG 61
Query: 78 EMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAI 137
EM+DL+H + FL KI++ DY+V+AGS L ++TAGARQ GESRLNL+QRN+++FK I
Sbjct: 62 EMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI 121
Query: 138 IPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV 197
IP +VK+SPDC+ + WKLSGLP +R+IGSG NLDS+RFR+L+ + L V
Sbjct: 122 IPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGV 181
Query: 198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE 257
++ V +++G+HGDS ++WS + +HK+VVDSAYE
Sbjct: 182 HSCLVIGWVIGQHGDSVPSVWSGMWDAK---------------------LHKDVVDSAYE 220
Query: 258 VISLKGYTSWAIGY-----------------SAANLARSIIRDQRKIHPVSVLAKGFYGI 300
VI LKGYTSWAIG S A+LA++I++D ++HPVS + K FYGI
Sbjct: 221 VIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGI 280
Query: 301 DGGDVFLSLPAQLGRGGV-LGVTNIHLNQEESHRLRNSAKTILEVQSQLG 349
+VFLSLP L G + + L +E +L+ SA T+ ++Q L
Sbjct: 281 K-DNVFLSLPCVLNNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDLK 329
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 423 bits (1091), Expect = e-150
Identities = 111/312 (35%), Positives = 169/312 (54%), Gaps = 21/312 (6%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
K+ +G G VG A T L V+E+ALVD D GE +DL HAAA + + KI+
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
DY++ GS++ +VTAG + G +RL+L +N + K I +V+ +P+ +L+V NP+
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D++TY+ WK SG P N V G G LDS R + L + N +A+I+GEHGDS
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARN--IRRAWIIGEHGDSMFVA 179
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
S G E++ +V A EVI KG T + + +
Sbjct: 180 KSLADFDGEVD---------------WEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMV 224
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
++++ D +I P S++ +G YGI+ +V + +PA+LG+ G V +I L+ EE +LRNS
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNS 281
Query: 338 AKTILEVQSQLG 349
AK + E +LG
Sbjct: 282 AKILRERLEELG 293
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 419 bits (1079), Expect = e-148
Identities = 103/322 (31%), Positives = 173/322 (53%), Gaps = 26/322 (8%)
Query: 30 PPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL 89
K KI+V+G G +G+A I + + L L+D + +G +DL+
Sbjct: 7 ANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLS-EGTKGATMDLEIFNL-- 63
Query: 90 PRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI 149
+ S D + +A S + I T + + +S L+++Q N+ +F+A++P L YS +
Sbjct: 64 --PNVEISKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSV 120
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
LL+ + PV+I+TYV WKLS P+NRVIG G NLDS R ++++ + L + +++GE
Sbjct: 121 LLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGE 180
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI 269
G+ V WS E+ + ++ + A E++ +KG SW++
Sbjct: 181 QGEDKVLTWSGQ------------------EEVVSHTSQVQLSNRAMELLRVKGQRSWSV 222
Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQE 329
G S A++ SI+ +++K+H VS LAKG+Y I+ +VFLSLP LG GV V L ++
Sbjct: 223 GLSVADMVDSIVNNKKKVHSVSALAKGYYDIN-SEVFLSLPCILGTNGVSEVIKTTLKED 281
Query: 330 ESH-RLRNSAKTILEVQSQLGI 350
+L++SA +I +Q QL +
Sbjct: 282 TVTEKLQSSASSIHSLQQQLKL 303
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 402 bits (1036), Expect = e-141
Identities = 111/312 (35%), Positives = 185/312 (59%), Gaps = 11/312 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
K++VIG GNVG +A+ + QD +E+ +VD K +G+ LD++ ++ T++ +
Sbjct: 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
DY T SD+CI+TAG + G SR +LL +N + + V+ SPD +++VANP+
Sbjct: 62 NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
D++TYVA++ SG P+NRV+G LD+ RFR +A+ LDV+ +DVQA ++G HGD+ V L
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAANL 276
+VGG+P+ + + +E I + + E++ L G ++W A G +AA +
Sbjct: 182 PRYTTVGGIPVPQLI-------DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
+I++D ++I P + G YG+D D+F+ +P +LG GGV V + L+ +E +L+
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGLD--DLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKT 292
Query: 337 SAKTILEVQSQL 348
SA + L
Sbjct: 293 SAGHVHSNLDDL 304
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 397 bits (1022), Expect = e-139
Identities = 110/313 (35%), Positives = 175/313 (55%), Gaps = 12/313 (3%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
KI+VIG GNVG A + + EL L+D +G+ LD+ + TK+ S
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
DYA TA SD+ I+TAG + G +R +LL +N + K + ++K+S + I+++V+NP+
Sbjct: 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
DI+T+VAW SGLP RVIG LD++RFR +A L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAAN 275
+V G+PI L ET++ + + + E++ +G +A S
Sbjct: 182 VKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVE 234
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
+ SI+ D++++ P +V +G YGID F+ +P +LGR GV + I+L+Q + L+
Sbjct: 235 MVESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQ 292
Query: 336 NSAKTILEVQSQL 348
SAK + E L
Sbjct: 293 KSAKIVDENCKML 305
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 379 bits (975), Expect = e-132
Identities = 101/327 (30%), Positives = 169/327 (51%), Gaps = 14/327 (4%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL- 89
P+ +R K+++IG+G +G + ++ + + L D G+ LDL H + +
Sbjct: 3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVD 61
Query: 90 PRTKILASVDY-AVTAGSDLCIVTAGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVK 143
+ A Y A G+D IVTAG ++ G+ SR +LL N + + I + K
Sbjct: 62 TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK 121
Query: 144 YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQ 203
Y P +++V NP+D + V + SG+P+N + G LDS RFR +AD L V+ +DVQ
Sbjct: 122 YCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 204 AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL-- 261
A ++G HGD V L I+V G PI F++ + ++ LE I + S E++
Sbjct: 182 ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT--EKQLEEIAEHTKVSGGEIVRFLG 239
Query: 262 KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGV 321
+G +A SA +A S + D++++ P SV G YG+ D+F+ LPA +G G+ V
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGIERV 297
Query: 322 TNIHLNQEESHRLRNSAKTILEVQSQL 348
+ LN+EE + + S ++ + +
Sbjct: 298 IELELNEEEKKQFQKSVDDVMALNKAV 324
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 373 bits (961), Expect = e-130
Identities = 97/311 (31%), Positives = 163/311 (52%), Gaps = 12/311 (3%)
Query: 40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASV 98
I+++G G VGMA A ++ + ++L L+ K +GE LDL HAAA L +I S
Sbjct: 2 ITILGAGKVGMATAVMLMMRG-YDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 99 DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
Y GSD+ +VTAG + G +R LL+ N + + + Y+ D I++I NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+TYV +K +G P RVIG LDS+R + ++ L V+ + V A ++G HG +
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAANLA 277
SVGGVP+ + KE +E + E V++ ++ L+GY+S
Sbjct: 181 RLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
+I RD ++I+P S+ +G YG + D+ +PA +G+ G+ + + L ++E + +
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYN--DIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEA 291
Query: 338 AKTILEVQSQL 348
+ + ++ L
Sbjct: 292 VQAVKKLVETL 302
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 372 bits (959), Expect = e-130
Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 8/316 (2%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
KI+VIG+G +G IA + + + ++ L D +G+ LD+ H+ +K+
Sbjct: 3 ERRKIAVIGSGQIGGNIAYIVGKDN-LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKV 61
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
+ + DYA +GSD+ I+TA + R LL N + ++ + KY P+ ++ +
Sbjct: 62 IGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NP+D++ K+SGLP N+V G LDSSRFR +A H VNA DV A ++G HGD
Sbjct: 122 NPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGM 181
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
V SS+SVGGVP+ SF+++ I +E ++ I + EV G +A +
Sbjct: 182 VPATSSVSVGGVPLSSFIKQGLI--TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAA 239
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
A +A + ++D++ + P S YG+ +++ +P +G+ GV + + L E
Sbjct: 240 AVKMAEAYLKDKKAVVPCSAFCSNHYGVK--GIYMGVPTIIGKNGVEDILELDLTPLEQK 297
Query: 333 RLRNSAKTILEVQSQL 348
L S + + L
Sbjct: 298 LLGESINEVNTISKVL 313
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 366 bits (942), Expect = e-127
Identities = 89/319 (27%), Positives = 170/319 (53%), Gaps = 8/319 (2%)
Query: 33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PR 91
+ KI++IG+G +G +A ++ + ++ L D +G+ LD+ ++
Sbjct: 3 GSMARNKIALIGSGMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFD 61
Query: 92 TKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL 151
K + DYA G+D+ IVTAG + G SR +LL NL + + + + KY+P+ ++
Sbjct: 62 AKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121
Query: 152 IVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHG 211
+ NP+D + + K SGLP+++V+G LDS+RFR+ L++ +V+ +DV +++G HG
Sbjct: 122 CITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHG 181
Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAI 269
DS V L +V G+P+ ++ ++ L+ I + D E++ L G +A
Sbjct: 182 DSMVPLARYSTVAGIPLPDLVKMGWT--SQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAP 239
Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQE 329
SA +A S ++D++++ PV+ G YG+ D+++ +P +G GV + I L+++
Sbjct: 240 AASAIQMAESYLKDKKRVLPVAAQLSGQYGVK--DMYVGVPTVIGANGVERIIEIDLDKD 297
Query: 330 ESHRLRNSAKTILEVQSQL 348
E + S ++ +
Sbjct: 298 EKAQFDKSVASVAGLCEAC 316
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 365 bits (940), Expect = e-127
Identities = 91/316 (28%), Positives = 162/316 (51%), Gaps = 8/316 (2%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKI 94
KIS+IG G +G IA + +D + ++ + D +G+ LDL H A + KI
Sbjct: 13 MRKKISIIGAGQIGSTIALLLGQKD-LGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKI 71
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
+Y SD+ I+TAG + +R +LL N + ++ + KY P+ ++ +
Sbjct: 72 FGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NP+D + Y + SG+P+N+V G LDS+RFR L+ L V DV A +VG HGD
Sbjct: 132 NPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEM 191
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
+ L SS+++GG+ + F+E+ +I + I K+ E++ L G +A S
Sbjct: 192 IPLTSSVTIGGILLSDFVEQGKIT--HSQINEIIKKTAFGGGEIVELLKTGSAFYAPAAS 249
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
A +A++ ++D + + S G Y ++ ++F+ +P +G+ G+ V ++L+ +E
Sbjct: 250 AVAMAQAYLKDSKSVLVCSTYLTGQYNVN--NLFVGVPVVIGKNGIEDVVIVNLSDDEKS 307
Query: 333 RLRNSAKTILEVQSQL 348
S ++I + L
Sbjct: 308 LFSKSVESIQNLVQDL 323
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 361 bits (930), Expect = e-125
Identities = 97/315 (30%), Positives = 168/315 (53%), Gaps = 13/315 (4%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKIL 95
KIS+IG G VG A + ++ + + L+D +G+ LDL A+ ++
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96 ASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155
+ +YA TA SD+ +VT+GA + G SR +L++ N + +A I SP+ ++++V N
Sbjct: 61 GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
P+D +TY+A ++SG P RVIG LD++R+R +A V+ +DVQA ++G HGD V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
L + G+P+ F+ + L I + E+++L G +A +
Sbjct: 181 PLPRFSCISGIPVSEFI-------APDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
A + ++++D++++ PV+ G YG++ D++ +P LG GGV + + LN+EE
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTILEVQSQL 348
L SAK + L
Sbjct: 292 LNASAKAVRATLDTL 306
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 361 bits (929), Expect = e-125
Identities = 97/320 (30%), Positives = 163/320 (50%), Gaps = 11/320 (3%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTK 93
KI ++G+G +G +A I+ ++ + ++ L D + G+ LD H K
Sbjct: 2 APKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 94 ILASVDYAVTAGSDLCIVTAGARQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDC 148
+ S Y AG+D+ IVTAG + G+S R +LL N + I + K P+
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 149 ILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG 208
+++V NPVD++ + + SG+P N++IG G LD+SR ++ ++ L+V +DV A+IVG
Sbjct: 121 FIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG 180
Query: 209 EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWA 268
HG+ V L I+VGG+P+ F+ + I LE+I V++A E+++L A
Sbjct: 181 AHGNKMVLLKRYITVGGIPLQEFINNKLI--SDAELEAIFDRTVNTALEIVNLHASPYVA 238
Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
+ +A S ++D +K+ S L +G YG D+F P LG GV V + LN
Sbjct: 239 PAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS--DIFGGTPVVLGANGVEQVIELQLNS 296
Query: 329 EESHRLRNSAKTILEVQSQL 348
EE + + +++
Sbjct: 297 EEKAKFDEAIAETKRMKALA 316
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 360 bits (927), Expect = e-125
Identities = 93/317 (29%), Positives = 167/317 (52%), Gaps = 15/317 (4%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP-RTKI 94
K+++IG +G VG A A + + F+++L L+ + +KL G D+ A A I
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 95 LA--SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
+ + SD+ I+T+G + G SR++L + N + + + I +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
+ NPVD++TY A S N+V G GT+LDS RF+ +A V+ +V+ I+GEHGD
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD 180
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
S V L S+ S+GG+PI F +++ ++ I ++V ++I LKG + + +
Sbjct: 181 SMVPLLSATSIGGIPIQKFER-----FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAA 235
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
N+ R I+ +++++ +S G + GI DV + +P ++GR G+ V +I L+++E
Sbjct: 236 ILNVVRCIVNNEKRLLTLSAYVDGEFDGIR--DVCIGVPVKIGRDGIEEVVSIELDKDEI 293
Query: 332 HRLRNSAKTILEVQSQL 348
R SA+ I + ++
Sbjct: 294 IAFRKSAEIIKKYCEEV 310
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 355 bits (914), Expect = e-123
Identities = 98/320 (30%), Positives = 167/320 (52%), Gaps = 15/320 (4%)
Query: 34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLP- 90
T + K+SVIG G G A + ++ + + LVD + +G+ LD+ A+
Sbjct: 5 TIKRKKVSVIGAGFTGATTAFLLAQKELAD-VVLVDIPQLENPTKGKALDMLEASPVQGF 63
Query: 91 RTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCIL 150
I+ + DYA TA SD+ ++TAG + G SR +L+ N + K+I + K+SP+ I+
Sbjct: 64 DANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123
Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
+++ NPVD +TY +K +G P RVIG LD++RFR +A L+++ +D+ +++G H
Sbjct: 124 VVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH 183
Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWA 268
GD V L GG+P+ + + KE LE+I + E++ L G +A
Sbjct: 184 GDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYYA 236
Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
S + +I++DQR++ P +G YG D++L +P LG G+ + + L
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYS--DLYLGVPVILGGNGIEKIIELELLA 294
Query: 329 EESHRLRNSAKTILEVQSQL 348
+E L S +++ V L
Sbjct: 295 DEKEALDRSVESVRNVMKVL 314
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 354 bits (910), Expect = e-122
Identities = 91/317 (28%), Positives = 165/317 (52%), Gaps = 9/317 (2%)
Query: 36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
KI+++G GN+G +A L + + ++ L D G+ LDL K+
Sbjct: 4 ARKKITLVGAGNIGGTLAHLALIKQ-LGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV 62
Query: 95 LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
+ DY SD+ IVTAG + G SR +LL N+ + + + + P+ ++ +
Sbjct: 63 RGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
NP+DI+ + K SG+P N+++G LDS+RFR LAD L+V+ Q VQAY++G HGD+
Sbjct: 123 NPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTM 182
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
V L +V GV + +++ ++ ++E L++I E+++L G +A +
Sbjct: 183 VPLTKMSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAA 240
Query: 273 AANLARSIIRDQRKIHPVSV-LAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
+A S ++D++ I P + + G YG+D D+F+ +P ++ GV + ++ +E
Sbjct: 241 GIQMAESFLKDKKMILPCAAKVKAGMYGLD-EDLFVGVPTEISANGV-RPIEVEISDKER 298
Query: 332 HRLRNSAKTILEVQSQL 348
+L+ S I ++
Sbjct: 299 EQLQVSINAIKDLNKAA 315
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 238 bits (609), Expect = 1e-76
Identities = 69/315 (21%), Positives = 128/315 (40%), Gaps = 12/315 (3%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
K++++G G +G +AQT L L D A L G +++H S
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TS 68
Query: 98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANP 156
+ + + GA + G +R +LL+ N + + + Y PDC +I+ NP
Sbjct: 69 DIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSV 215
DI V SGL ++V LDS+R + LA H + V G HG+
Sbjct: 129 ADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAA 274
S+ V G P+ + ++ E + + VV +I L+G +S+ + Y +
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKL--TNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSI 245
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHL-NQEESHR 333
+ R+ + + P G + + +++ + + GV L N+ E
Sbjct: 246 EMIRAAMGGEAFRWPAGCYVNV-PGFE--HIMMAMETTITKDGVKHSDINQLGNEAERAA 302
Query: 334 LRNSAKTILEVQSQL 348
L+ S + +++ ++
Sbjct: 303 LKESYSHLAKLRDEV 317
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 171 bits (435), Expect = 4e-51
Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 31/316 (9%)
Query: 39 KISVIG-TGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
K++V+G G +G A+A + TQ EL+L D A G +DL H +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
G+D+ +++AG + G R +L N + K ++ + K P + I+ NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
V+ +A K N++ G T LD R +A+ +V+ ++G H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK-GYTS--WAI 269
++ +P+LS + +++ ++ + + K + ++ EV+ K G S ++
Sbjct: 180 VTI----------LPLLSQVPG--VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-H 325
G +AA S++R ++ + + + G F S P LG+ GV +I
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYV----EGDGQYARFFSQPLLLGKNGVEERKSIGT 283
Query: 326 LNQEESHRLRNSAKTI 341
L+ E + L T+
Sbjct: 284 LSAFEQNALEGMLDTL 299
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 169 bits (430), Expect = 4e-50
Identities = 59/327 (18%), Positives = 117/327 (35%), Gaps = 26/327 (7%)
Query: 34 TKRHTKISVIG-TGNVGMAIAQTI-----LTQDFVEELALVD----AKADKLRGEMLDLQ 83
K +++V G G + ++ I L +D L L++ L+G M+++
Sbjct: 2 AKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEID 61
Query: 84 HAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK 143
A L + +D+ ++ + G R +LL+ N +F +
Sbjct: 62 DCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDA 121
Query: 144 Y-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
S + +L+V NP + Y+A K + + + LD +R +A +
Sbjct: 122 VASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSI 181
Query: 203 QAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL 261
+ V G H + A + + G + + + ++ V +I
Sbjct: 182 EKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAAIIDA 236
Query: 262 KGYTSWAIGYSAAN-----LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
+G +S SAAN + ++ K + + + G YGI G V P G
Sbjct: 237 RGVSSA---ASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG-VIFGFPVTTENG 292
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILE 343
V + ++ R+ + +LE
Sbjct: 293 EYKIVQGLSIDAFSQERINVTLNELLE 319
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 162 bits (411), Expect = 2e-47
Identities = 57/317 (17%), Positives = 121/317 (38%), Gaps = 33/317 (10%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILA 96
K++V+G +G +G ++ + V L L D G DL H + +
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYLGP 59
Query: 97 SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
G D+ ++ AG + G +R +L N ++ + ++ PD ++ I++NP
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
Query: 157 VDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH-G 211
V+ + K N++ G T LD R +A+ ++ V ++G H G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAG 178
Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWA 268
+ + L S + + ++ L ++ + ++ EV+ K G + +
Sbjct: 179 KTIIPLISQCTPKV------------DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLS 226
Query: 269 IGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI- 324
+ Y+ A S++ + + S + + S P LG+ G+ I
Sbjct: 227 MAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCP----YFSTPLLLGKKGIEKNLGIG 282
Query: 325 HLNQEESHRLRNSAKTI 341
++ E + + +
Sbjct: 283 KISPFEEKMIAEAIPEL 299
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 161 bits (410), Expect = 3e-47
Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 39/327 (11%)
Query: 32 SPTKRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---- 86
K++++G G +G +A + V L L D G D+ H
Sbjct: 3 KGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP--GVTADISHMDTGAV 60
Query: 87 --AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144
FL + + A G DL IV AG + G +R +L + N + K + + K
Sbjct: 61 VRGFLGQQQ-----LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC 115
Query: 145 SPDCILLIVANPVDILTYVA----WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQ 200
P I+ +++NPV+ +A K R++G LD R +A+ L ++ +
Sbjct: 116 CPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPR 174
Query: 201 DVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS 260
DV +VG H ++ +P+LS ++ ++ +E + + + + EV+
Sbjct: 175 DVDVPVVGGHAGVTI----------LPLLSQVKPPS-SFTQEEISYLTDRIQNGGTEVVE 223
Query: 261 LK-GYTS--WAIGYSAANLARSIIRDQRKIHPVSVLA--KGFYGIDGGDVFLSLPAQLGR 315
K G S ++ Y+A A + +R R V A F + +LGR
Sbjct: 224 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV---TELPFFASKVRLGR 280
Query: 316 GGVLGVTNI-HLNQEESHRLRNSAKTI 341
G+ V ++ LN+ E L + K +
Sbjct: 281 NGIEEVYSLGPLNEYERIGLEKAKKEL 307
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 159 bits (403), Expect = 4e-46
Identities = 64/322 (19%), Positives = 119/322 (36%), Gaps = 22/322 (6%)
Query: 39 KISVIG-TGNVGMAIAQTI-----LTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP 90
++ V G G + ++ +I +D L L+D L G +++LQ A L
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64
Query: 91 RTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCI 149
+ I + D+ I+ + G R +LL+ N+ +FK L KY+
Sbjct: 65 KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV-G 208
+++V NP + A K + T LD +R + +A L V + DV+ I+ G
Sbjct: 125 VIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWG 184
Query: 209 EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWA 268
H + + V + + + V VI + +S
Sbjct: 185 NHSSTQYPDVNHAKVKLQAKEVGVYEAVKD-DSWLKGEFITTVQQRGAAVIKARKLSSA- 242
Query: 269 IGYSAANLARSIIRD------QRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGV 321
SAA +RD + + + +++ G YG+ + S P + V
Sbjct: 243 --MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDD-LLYSFPVTIKDKTWKIV 299
Query: 322 TNIHLNQEESHRLRNSAKTILE 343
+ +N ++ +AK + E
Sbjct: 300 EGLPINDFSREKMDLTAKELAE 321
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 154 bits (391), Expect = 6e-44
Identities = 67/328 (20%), Positives = 115/328 (35%), Gaps = 27/328 (8%)
Query: 34 TKRHTKISVIG-TGNVGMAIAQTILT-----QDFVEELALVDAK--ADKLRGEMLDLQHA 85
K+ I+V G G + + + + QD L L+ ++ L G ++L+ +
Sbjct: 29 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 88
Query: 86 AAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY- 144
L R + Y V D ++ + G R LL N +F L
Sbjct: 89 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148
Query: 145 SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQA 204
S + +L+V NP + + K + + + T LD +R + LA V V
Sbjct: 149 SKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 208
Query: 205 YIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG 263
+ G H + V + + + G P+ K+ I K E V +I G
Sbjct: 209 VTIWGNHSTTQVPDFLNAKIDGRPV-----KEVIKRTKWLEEEFTITVQKRGGALIQKWG 263
Query: 264 YTSWAIGYSAANLARSIIR------DQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRG 316
+S A S A I+ + V G YGI + S+P +
Sbjct: 264 RSSAA---STAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAED-IVFSMPCRSKGD 319
Query: 317 GVLG-VTNIHLNQEESHRLRNSAKTILE 343
G T++ + R++ S +L
Sbjct: 320 GDYELATDVSNDDFLWERIKKSEAELLA 347
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 150 bits (382), Expect = 4e-43
Identities = 74/325 (22%), Positives = 128/325 (39%), Gaps = 26/325 (8%)
Query: 35 KRHTKISVIG-TGNVGMAIAQTI-----LTQDFVEELALVD--AKADKLRGEMLDLQHAA 86
K +++V G G +G ++ I L +D L L++ L G +++L+ A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 87 AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP 146
L +D ++ A + AG R +LLQ N +F L + +
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 147 -DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY 205
D +L+V NP + +A+K + + R + T LD +R + LA ++
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 206 IV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY 264
V G H + V G P L ++ + V +I +G
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFI------PTVAQRGAAIIQARGA 235
Query: 265 TSWAIGYSAANLARSIIRD------QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
+S SAAN A IRD + ++V ++G YGI G V+ S P G
Sbjct: 236 SSA---ASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVY-SFPVTAKDGAY 291
Query: 319 LGVTNIHLNQEESHRLRNSAKTILE 343
V + +N+ R+ +A+ +L+
Sbjct: 292 RVVEGLEINEFARKRMEITAQELLD 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 5e-11
Identities = 44/261 (16%), Positives = 75/261 (28%), Gaps = 62/261 (23%)
Query: 81 DLQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRN-LSLF-KAI 137
+ + AF KIL + VT D + L SL K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 138 ------IPPLV-KYSPDCILLIVAN-PVDILTYVAWKLSGLPS-NRVIGSG-TNLDSSRF 187
+P V +P + +I + + T+ WK +I S L+ + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 188 R------FLLADHLDVNAQ------------DVQAYIVGEHGDSSVALWSSISVGGVPIL 229
R + + DV + H S V S +P +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 230 SFLEKQQIAYEKETLESIHKEVVDSAYEVI-----------SLKGYTSWAIGY--SAANL 276
K ++ E +H+ +VD Y + L Y IG+
Sbjct: 432 YLELKVKLENEYA----LHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 277 A------RSIIRD----QRKI 287
R + D ++KI
Sbjct: 487 PERMTLFRMVFLDFRFLEQKI 507
Score = 32.1 bits (72), Expect = 0.29
Identities = 42/230 (18%), Positives = 70/230 (30%), Gaps = 57/230 (24%)
Query: 134 FKAIIP---PLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190
+K I+ + DC D+ LS + +I S + S L
Sbjct: 18 YKDILSVFEDAFVDNFDC--------KDVQDMPKSILSKEEIDHIIMSKDAV--SGTLRL 67
Query: 191 LADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKE 250
L + VQ ++ + L S I E++Q +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT---------EQRQPSMMTRMYIEQRDR 118
Query: 251 V-----VDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDG-G- 303
+ V + Y V L+ Y R + + R V + G+ G G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLK----------LRQALLELRPAKNVLI-----DGVLGSGK 163
Query: 304 -----DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
DV LS Q + ++L NS +T+LE+ +L
Sbjct: 164 TWVALDVCLSYKVQCKMDF--KIFWLNLKN------CNSPETVLEMLQKL 205
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 52.6 bits (125), Expect = 8e-08
Identities = 42/267 (15%), Positives = 78/267 (29%), Gaps = 43/267 (16%)
Query: 39 KISVIGTGNVGMA---IAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFL-PRTK 93
KI +IG G+ + ++ T + L+D ++L + + + K
Sbjct: 5 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK 64
Query: 94 ILASVDY-AVTAGSDLCIVTA------------------GARQIAGESRLNLL------- 127
+++ V +D I TA G + N++
Sbjct: 65 FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFS 124
Query: 128 -QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
L F I + K SP L ANP+ T ++ + +G
Sbjct: 125 NYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT---TLVTRTVPIKAVGFCHGHYGVM 181
Query: 187 FRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLE 245
+ + L + + V + G HG + G L+K K+
Sbjct: 182 E---IVEKLGLEEEKVDWQVAGVNHG----IWLNRFRYNGGNAYPLLDKWIEEKSKDWKP 234
Query: 246 SIHKEVVDSAYEVISLKGYTSWAIGYS 272
S + + Y IG +
Sbjct: 235 ENPFNDQLSPAAIDMYRFYGVMPIGDT 261
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 52.4 bits (125), Expect = 1e-07
Identities = 38/265 (14%), Positives = 91/265 (34%), Gaps = 35/265 (13%)
Query: 34 TKRHTKISVIGTGNVGMA---IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
+ KI+ IG G+ G A ++ + + +AL D + + + + + +
Sbjct: 2 SLDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQ-KNEVIGNHSGNGR 60
Query: 91 RTKILASVDY-AVTAGSDLCIVTA------------------GARQIAGE----SRLNLL 127
+ A + +D+ I++ G Q G+ +
Sbjct: 61 -WRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRG 119
Query: 128 QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG-----SGTNL 182
R + +F I + Y+P+ ++ NP+ + T V +K+ P + IG GT
Sbjct: 120 LRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVF--PGIKAIGCCHEVFGTQK 177
Query: 183 DSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
+ +D++ ++G + + + S + +PI E
Sbjct: 178 LLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYE 237
Query: 243 TLESIHKEVVDSAYEVISLKGYTSW 267
++ V + ++ + ++
Sbjct: 238 LEGECWRDSVFCSAHRVAFDLFETY 262
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 47.5 bits (112), Expect = 4e-06
Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 35/212 (16%)
Query: 34 TKRHTKISVIGTGNV---GMAIAQTILTQDF-VEELALVDAKADKLR--GEMLDLQHAAA 87
K+ I + G G+ G+ + ++F + +L L D ++ D
Sbjct: 25 KKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD-VFIRE 83
Query: 88 FLPRTKILASVDY-AVTAGSDLCIVTAGARQIA--------------------GESRLNL 126
P + A+ D D + + A G +
Sbjct: 84 KAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAY 143
Query: 127 LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
R++ I+ + KYSPD +L +NP I+ +L P+++++
Sbjct: 144 GMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR--PNSKILNICDMPV--G 199
Query: 187 FRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
+A L ++++ + + + W
Sbjct: 200 IEDRMAQILGLSSRK---EMKVRYYGLNHFGW 228
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 46.7 bits (110), Expect = 5e-06
Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 35/232 (15%)
Query: 36 RHTKISVIG-----TGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFL 89
RH +I+VIG T + + +++D ++E+ D +K + + ++
Sbjct: 1 RHMRIAVIGGGSSYTPELVKGLLD--ISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR 58
Query: 90 PRTKILASVDYAVTAGSDLCIVTAG-------ARQIAGESRLNLLQRNLSLFKAI----- 137
+ I + + AV + I + L+ + +
Sbjct: 59 FKVLISDTFEGAVV-DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALR 117
Query: 138 -IPPLVKY------SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190
P + +Y + + ++ NP +T + IG F
Sbjct: 118 AFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYL--EYEKFIGLCNVPI--NFIRE 173
Query: 191 LADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
+A+ +DV G + ++ + V G + + +
Sbjct: 174 IAEMFSARLEDVFLKYYGL---NHLSFIEKVFVKGEDVTEKVFENLKLKLSN 222
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 46.7 bits (110), Expect = 6e-06
Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 37/237 (15%)
Query: 35 KRHTKISVIGTG--NVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDL---QHAAA 87
+ KI+ IG G + I V EL LVD K + E++ +
Sbjct: 5 DKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEK 64
Query: 88 FLPRTKILASVDY-AVTAGSDLCIVTAGA--------------------RQIAGESRLNL 126
+I ++D G+D ++ G L
Sbjct: 65 AGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFK 124
Query: 127 LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
R + + II + + PD L+ NP ++T + + +V+G
Sbjct: 125 GLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT--KQEKVVGLCNV--PIG 180
Query: 187 FRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
R +A L V+A V G H + + GV + + ++
Sbjct: 181 MRMGVAKLLGVDADRVHIDFAGLNHM----VFGLHVYLDGVEVTEKVIDLVAHPDRS 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 8e-06
Identities = 45/220 (20%), Positives = 71/220 (32%), Gaps = 101/220 (45%)
Query: 12 PGGLDLTQT---F----------FKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILT 58
P GLD Q+ F F P+ A+P H+ + + A ++
Sbjct: 399 PSGLD--QSRIPFSERKLKFSNRFLPV--ASP-----FHSHL---------LVPASDLIN 440
Query: 59 QDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQI 118
+D V+ +AK D+Q +P V Y GSDL R +
Sbjct: 441 KDLVKNNVSFNAK---------DIQ-----IP-------V-YDTFDGSDL-------RVL 471
Query: 119 AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW-KLSGLPSNRVI- 176
+G I +V DCI + PV W + + ++
Sbjct: 472 SGS---------------ISERIV----DCI---IRLPVK------WETTTQFKATHILD 503
Query: 177 -GSGT----------NLDSSRFRFLLADHLDVNAQDVQAY 205
G G N D + R ++A LD+N D +
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 45.8 bits (108), Expect = 2e-05
Identities = 70/431 (16%), Positives = 135/431 (31%), Gaps = 147/431 (34%)
Query: 16 DLTQTFF-------KPINHAAPP----SPTKRHTKISVI--GTGNVGMAIA--QTI---- 56
+L + + +P + + + + + ++ I G GN + +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 57 --LTQDFVE-------ELALVDAKADKLRGEMLD----LQHAAAFLPRTKILASV----- 98
L D ++ EL A+K+ + L+ L++ + P L S+
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPISCP 239
Query: 99 --------DYAVTA---------------GSDLC---IVTAGARQIA----GESRLNLLQ 128
Y VTA G+ +VTA A IA ES ++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDSWESFFVSVR 297
Query: 129 RNLS-LF------------KAIIPPLVKYS-------PDCILLIV-ANPVDILTYVAWKL 167
+ ++ LF ++ P +++ S P +L I + YV
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 168 SGLPSNRVIG-SGTNLDSSRFRFLLA------DHLDVNAQDVQAYIVGEHGDSSVALWS- 219
S LP+ + + S N +++ L++ + +A D S +S
Sbjct: 358 SHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKA---PSGLDQSRIPFSE 411
Query: 220 ---SISVGGVPILS-FLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI------ 269
S +P+ S F + I+K++V + +S I
Sbjct: 412 RKLKFSNRFLPVASPFHSH----LLVPASDLINKDLVKNN---VSFNA-KDIQIPVYDTF 463
Query: 270 ---------GYSAANLARSIIRDQRKIH-PVSVLAKGFYGIDGGDVFLSLPAQLGRGGVL 319
G + + IIR + + K + +D G GG
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLP--VKWETTTQFKATHILD-----------FGPGGAS 510
Query: 320 GVTN-IHLNQE 329
G+ H N++
Sbjct: 511 GLGVLTHRNKD 521
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 45.7 bits (107), Expect = 1e-05
Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 51/283 (18%)
Query: 35 KRHTKISVIG------TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF 88
H KIS+IG + IAQT + ++D +L + +
Sbjct: 10 HHHMKISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEE 69
Query: 89 LP----------RTKILASVDYAVTA--------------------------GSDLCIVT 112
L + + D+ + G I +
Sbjct: 70 LNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDS 129
Query: 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
++ + + ++ L I + K +P L+ ANPV +T + +G
Sbjct: 130 QELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEITQAVRRWTGA-- 187
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFL 232
++G + + + LD++ ++V + G + + G L
Sbjct: 188 -NIVGF---CHGVAGVYEVFEKLDLDPEEVDWQVAGV---NHGIWLNRFRYRGEDAYPLL 240
Query: 233 EKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
++ E + S + K Y IG + N
Sbjct: 241 DEWIEKKLPEWEPKNPWDTQMSPAAMDMYKFYGMLPIGDTVRN 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.012
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 21/45 (46%)
Query: 233 EKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
EKQ + K L++ SLK Y A SA LA
Sbjct: 18 EKQALK--K--LQA-------------SLKLY---ADD-SAPALA 41
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 33.2 bits (75), Expect = 0.093
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFVEELALV----DAKADKLRGEMLDLQHAAAFLPRT 92
T I +IG GN+ +A+ + + F + V + A +L A
Sbjct: 10 DTPIVLIGAGNLATNLAKALYRKGF--RIVQVYSRTEESARELA----QKVEAEYTTDLA 63
Query: 93 KILASVDYAVTAGSDLCIVTAGARQIAGESRLN 125
++ + + D + I R
Sbjct: 64 EVNPYAKLYIVSLKDSAFAEL-LQGIVEGKREE 95
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 32.6 bits (75), Expect = 0.18
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 21/101 (20%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL------- 75
+ + + +++IG G +G A+A E LV +
Sbjct: 43 RGDHTNSEAYDVN---SVAIIGGGTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVM 97
Query: 76 ------RGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCI 110
+ D + + + D+ + DL +
Sbjct: 98 YAREKSFKRLNDKRIEKIN---ANLKITSDFHKLSNCDLIV 135
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.2 bits (73), Expect = 0.20
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 18/106 (16%)
Query: 27 HAAPPSPTKRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA 85
H + K +KI + G TG +G + + L R
Sbjct: 3 HGMEENGMK--SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFT-------RPNSSKTTLL 52
Query: 86 AAFLPRTKILASVDY-------AVTAGSDLCIVTAGARQIAGESRL 124
F I+ + + D+ I QI + ++
Sbjct: 53 DEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKI 98
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.8 bits (69), Expect = 0.44
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS- 97
+ +IG G +G +A+ + F E+A + + + + + A+
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGF--EIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAAS 59
Query: 98 -------VDYAVTAGSDLCIVTAGARQIAG 120
+ + AG DL +++ GA
Sbjct: 60 QQAVKDYAEKILKAGIDLIVLSTGAFADRD 89
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.8 bits (69), Expect = 0.45
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 34 TKRHTKISVIGTGNVGMAIAQ 54
+++ + + GTG+ G ++
Sbjct: 16 SEKQGVVCIFGTGDFGKSLGL 36
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 30.7 bits (69), Expect = 0.59
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 38 TKISVIGTGNVGMAIAQ 54
K+ ++G+G+ ++A
Sbjct: 29 PKVGILGSGDFARSLAT 45
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 30.6 bits (69), Expect = 0.60
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
+ +++G GN+G Q + E +V ++ E+ + + +
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQLESV---- 66
Query: 99 DYAVTAGSDLCIVTAGARQIA 119
D+ +V + +R++
Sbjct: 67 --------DVALVCSPSREVE 79
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.4 bits (66), Expect = 0.77
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
I V+G G +G IA +L + + D L
Sbjct: 7 NICVVGAGKIGQMIAA-LLKTSSNYSVTVADHDLAALA 43
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 29.5 bits (67), Expect = 0.83
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 12/78 (15%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR--GEMLDLQ--HAAAFLPRTKI 94
I + G G +G IA + + +VD A T
Sbjct: 21 YIVIFGCGRLGSLIANLASSSGH--SVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLK 78
Query: 95 LASVDY-----AVTAGSD 107
++ A T D
Sbjct: 79 ECGMEKADMVFAFT-NDD 95
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 30.2 bits (67), Expect = 0.94
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 38 TKISVIGTGNVGMAIA 53
K+ V G GN ++
Sbjct: 3 VKVCVCGGGNGAHTLS 18
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.7 bits (66), Expect = 1.1
Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 21/183 (11%)
Query: 39 KISVIGTGNVGMAIAQ---------TILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL 89
KI+V+GTG VG +A TI T+D LA + A + +L
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPP-------FSQWL 73
Query: 90 PRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI 149
P + +A A +V A + + NL+ K ++
Sbjct: 74 PEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLA-GKILVDIANPLDFSHG 132
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
+ NPV+ + P +V+ + +++S L+ D D ++ G
Sbjct: 133 MPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNAS----LMVDPGRAAGGDHSVFVSGN 188
Query: 210 HGD 212
Sbjct: 189 DAA 191
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR--GEMLDLQ 83
I + G G VG +A+++ + ++ L+D D + +D
Sbjct: 6 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEIDAL 50
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.4 bits (65), Expect = 1.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 39 KISVIGTGNVGMAIAQ 54
+I++ G GN+G AI
Sbjct: 21 EITIFGKGNMGQAIGH 36
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR--GEMLDLQ 83
KI ++G G VG +A+ ++ ++ ++ +VD D+LR + DL+
Sbjct: 5 KIIILGAGQVGGTLAENLVGENN--DITIVDKDGDRLRELQDKYDLR 49
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 29.6 bits (67), Expect = 1.8
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 38 TKISVIGTGNVGMAIAQTI-----------LTQDFVEE-LALVDAKADKL--RGEMLDLQ 83
++VIG+G +G IA+ ++ + + + + A+ + RG++ +
Sbjct: 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKL-TAE 64
Query: 84 HAAAFLPRTKILASVDYAVTAGSDLCI 110
L R ++ D A +DL I
Sbjct: 65 TCERTLKR--LIPVTDIHALAAADLVI 89
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 29.3 bits (66), Expect = 1.8
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
++ IG G +A + ++ + DK
Sbjct: 7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKRE 44
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.0 bits (65), Expect = 1.9
Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 11/108 (10%)
Query: 21 FFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML 80
+ H ++ ++G G +G + + L ++ + + +
Sbjct: 23 TAAEKLNQRDQLINPGHAQVLILGMGRIGTGAYDELRARYGKISLG-IEIREEAAQQHRS 81
Query: 81 DLQHA-------AAFLPRTKILASVDYAVTAGSDL---CIVTAGARQI 118
+ ++ F R V + A ++
Sbjct: 82 EGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRR 129
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 29.2 bits (66), Expect = 2.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 31 PSPTKRHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLR 76
P T R + +++G G + + D E + + D L+
Sbjct: 7 PPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK 53
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling;
HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 29.2 bits (65), Expect = 2.1
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALV---DAKADKLR 76
+ K+++IG+GN+G + +L E+ + DA +D L
Sbjct: 2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLA 46
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 29.2 bits (66), Expect = 2.1
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
++++IG G G +TI + L + D A P I +
Sbjct: 12 RLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDN----------LALVPPGCVIESDW 61
Query: 99 D 99
Sbjct: 62 R 62
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis,
NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A
{Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 28.8 bits (65), Expect = 2.4
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 28 AAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLD 81
+ + + IG G + A+A+ + ++ D L
Sbjct: 13 LGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR 68
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 28.7 bits (64), Expect = 2.5
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA 85
+ V+G G G + + L L+ + + G + +++
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQI 55
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 29.0 bits (65), Expect = 2.5
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 23 KPINHAAPPSPTKRHTKISVIGTGNVG-MAIAQTILTQDFVEELALVDAKADKLR 76
+P+ +A P P R +++G G I ALV A+K +
Sbjct: 69 RPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAK 123
>3byw_A Putative arabinofuranosyltransferase; APC90585.2, extracellular
domain; HET: MSE; 2.35A {Corynebacterium diphtheriae
nctc 13129ORGANISM_TAXID}
Length = 177
Score = 28.4 bits (63), Expect = 2.5
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 119 AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP------VDILTYVAWKLSGLPS 172
A + L + + L + D + I A ++ +
Sbjct: 74 ANDDGLQITSHGELVLDLSKRELAQLPADATIAISATEDETTAGIEGDDSTTETVERDVR 133
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQ 200
++G T L+S+ LL L+ + +
Sbjct: 134 PIIMGIYTELESNAAADLLNAGLNAHVE 161
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 28.6 bits (63), Expect = 2.6
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
++ +GTG + + + +D E ++ D+ R L + K
Sbjct: 4 VLNFVGTGTLTRFFLECL--KDRYEIGYILSRSIDRARN--LAEVYGGKAATLEKHPELN 59
Query: 99 DYAVTAGSDLCI 110
D I
Sbjct: 60 GVVFVIVPDRYI 71
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.9 bits (64), Expect = 2.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 38 TKISVIGTGNVGMAIAQ 54
+V+G GN G A A
Sbjct: 5 KTYAVLGLGNGGHAFAA 21
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 28.7 bits (65), Expect = 2.6
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 27 HAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA 86
+ H K+ VIG G +G IA I ++ V L D L +
Sbjct: 2 GSDKIHHHHHHMKVFVIGAGLMGRGIAIAIASKHEV---VLQDVSEKALEAAREQI--PE 56
Query: 87 AFLPRTKILASVDYAVTAGSDLCI 110
L + I + D+ +
Sbjct: 57 ELLSK--IEFTTTLEKVKDCDIVM 78
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 28.7 bits (63), Expect = 3.3
Identities = 5/49 (10%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA 87
+ ++G+G V + ++ + + + +QH+
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTLESAKKLSAGVQHSTP 51
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 28.7 bits (65), Expect = 3.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 27 HAAPPSPTKRHTKISVIGTGNVGMAIA 53
H A KRH + VIG G +G AIA
Sbjct: 7 HMARIRAMKRHYEAVVIGGGIIGSAIA 33
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 28.2 bits (64), Expect = 3.4
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLR 76
+I IG GN+GMA+ ++ ++ V ++ D L+
Sbjct: 4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLK 43
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium
falciparum}
Length = 262
Score = 28.3 bits (64), Expect = 3.5
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKL 75
+ K+ +G G +G A+A I + + E L
Sbjct: 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT 44
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 28.5 bits (63), Expect = 3.6
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL 75
+I+ I G G + + +D VE +A D +
Sbjct: 22 RIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV 58
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 28.3 bits (64), Expect = 3.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 39 KISVIGTGNVGMAIA 53
KI+V G+G VG+++
Sbjct: 2 KIAVAGSGYVGLSLG 16
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 28.3 bits (64), Expect = 3.8
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 18 TQTFFKPINHAAPPSPTKRHT------KISVIGTGNVGMAIA 53
+ +H A + ++ KI++ GTG VG++
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSEFMKITISGTGYVGLSNG 52
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 28.5 bits (64), Expect = 3.8
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 15/86 (17%)
Query: 39 KISVIGTGNVGMAIAQTIL-----------TQDFVEE-LALVDAKADKL--RGEMLDLQH 84
+ ++G+G VG + A + L + + L G +
Sbjct: 8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLS 67
Query: 85 AAAFLPRTKILASVDYAVTAGSDLCI 110
A L ++ AV G
Sbjct: 68 AEEQLSLISSCTNLAEAV-EGVVHIQ 92
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.4 bits (63), Expect = 3.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 27 HAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL 75
H RH K+ ++G GN+G AIA L +F ++ + D + L
Sbjct: 6 HHHHHHIEGRHMKVLILGAGNIGRAIAWD-LKDEF--DVYIGDVNNENL 51
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.2 bits (63), Expect = 4.2
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 29 APPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA 70
P H +IG G A A++I +D + +V
Sbjct: 3 VPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE 44
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus
pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.9 bits (63), Expect = 4.9
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
KI +IG G + AI + + EL + + ++ +
Sbjct: 5 KIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSK 40
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 28.1 bits (63), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 131 LSLFKAIIPPLV-KYSPDCILL 151
LF+ +I +V Y P CI+L
Sbjct: 233 KHLFQPVINQVVDFYQPTCIVL 254
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 5.5
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 131 LSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190
+ +F + L KYSPD + ++ + +D + ++ L + L
Sbjct: 99 IEIFAKALKQLRKYSPDAKIFVLLHKMD----------LVQLDKRE----ELFQIMMKNL 144
Query: 191 LADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEK 234
+ ++ + +S WS I +P +S +
Sbjct: 145 SETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSNHQS 188
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 27.5 bits (61), Expect = 5.7
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI ++G TG +G I + ALV K + + IL
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGN-PTYALV-RKTITAANPETKEELIDNYQSLGVILL 60
Query: 97 SVDY-------AVTAGSDLCIVTAGARQIAGESRL 124
D D+ I AG I + ++
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKI 95
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.9 bits (61), Expect = 6.1
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
+ ++G+G V + T L + + + +
Sbjct: 25 NVLLLGSGFVAQPVIDT-LAANDDINVTVACRTLANAQ 61
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 27.7 bits (62), Expect = 6.9
Identities = 2/22 (9%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 131 LSLFKAIIPPLV-KYSPDCILL 151
+ ++++ + ++P ++L
Sbjct: 241 YQICESVLKEVYQAFNPKAVVL 262
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis,
oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Length = 280
Score = 27.1 bits (61), Expect = 8.4
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 37 HTKISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKLR 76
+ I+ IG GN+ I ++ + + + + DKL
Sbjct: 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLD 43
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 27.3 bits (60), Expect = 9.2
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 29 APPSPTKRHTKISVIG-TGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAA 86
+P K ++ + G TG +G +A L LA ++ L+
Sbjct: 4 SPVPSPK--GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKG 61
Query: 87 AFLPRTKILASVDYA-----VTA----GSDLCIVTAGARQIAGESRL 124
A I+ D+ + T G I + L
Sbjct: 62 A------IIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIAL 102
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 9.8
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 11/95 (11%)
Query: 38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
KI + G TG +G + + L+ + +Q F +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSH-PTFIYA--RPLTPDSTPSSVQLREEFRSMGVTII 61
Query: 97 SVDY-------AVTAGSDLCIVTAGARQIAGESRL 124
+ +V D+ I I+ + +
Sbjct: 62 EGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHI 96
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 26.7 bits (58), Expect = 9.8
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 12/151 (7%)
Query: 39 KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
+++++G TGN+G +A + T E+ + + +K + + + A +
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAG-----DASIT 54
Query: 98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
A I L+ L K ++ PLV S ++
Sbjct: 55 GMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSE- 112
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFR 188
+ L S +V+ + + ++RF
Sbjct: 113 --RSAAEIVAEVLESEKVVSALHTIPAARFA 141
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 27.2 bits (60), Expect = 9.8
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
T I+ IG G +IA + ++ A D L + A + +A
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 98 VDYAVTAGSD--LCIVTAGA 115
+ A +D L +V A
Sbjct: 85 I-----ACADVVLSLVVGAA 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,207,216
Number of extensions: 322736
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 122
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)