BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018761
         (350 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X9A|A Chain A, Crystal Structure Of G3p From Phage If1 In Complex With
           Its Coreceptor, The C-Terminal Domain Of Tola
 pdb|2X9A|C Chain C, Crystal Structure Of G3p From Phage If1 In Complex With
           Its Coreceptor, The C-Terminal Domain Of Tola
 pdb|2X9B|A Chain A, The Filamentous Phages Fd And If1 Use Different Infection
           Mechanisms
 pdb|2X9B|B Chain B, The Filamentous Phages Fd And If1 Use Different Infection
           Mechanisms
          Length = 65

 Score = 29.6 bits (65), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 184 ALVDASCFQAPAFDESNSSLWGSGE 208
           A  DA C   PAFD + S++W  G+
Sbjct: 1   ATTDAECLSKPAFDGTLSNVWKEGD 25


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,347,447
Number of Sequences: 62578
Number of extensions: 303496
Number of successful extensions: 587
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 6
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)