Query 018761
Match_columns 350
No_of_seqs 202 out of 1647
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10532 threonine and homoser 99.9 1.3E-24 2.8E-29 203.9 29.0 227 113-348 9-283 (293)
2 PRK11272 putative DMT superfam 99.9 2E-23 4.4E-28 195.7 29.3 225 118-348 10-287 (292)
3 PRK11689 aromatic amino acid e 99.9 8.9E-23 1.9E-27 191.6 25.5 222 116-348 4-289 (295)
4 PLN00411 nodulin MtN21 family 99.9 4.9E-22 1.1E-26 190.5 27.6 235 113-349 10-331 (358)
5 PRK11453 O-acetylserine/cystei 99.9 1.6E-21 3.5E-26 183.4 28.7 227 118-348 6-289 (299)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 6.6E-20 1.4E-24 168.5 25.3 203 128-341 1-259 (260)
7 PRK15430 putative chlorampheni 99.9 5.7E-19 1.2E-23 165.9 26.6 222 113-345 5-284 (296)
8 COG5006 rhtA Threonine/homoser 99.8 7.5E-18 1.6E-22 148.6 23.5 220 117-344 13-280 (292)
9 PTZ00343 triose or hexose phos 99.8 5.3E-17 1.1E-21 155.9 27.1 218 130-348 63-350 (350)
10 TIGR00817 tpt Tpt phosphate/ph 99.8 5.9E-17 1.3E-21 152.5 24.4 216 133-348 19-295 (302)
11 TIGR03340 phn_DUF6 phosphonate 99.8 4E-17 8.6E-22 152.2 21.4 219 118-343 3-280 (281)
12 COG0697 RhaT Permeases of the 99.7 5.4E-15 1.2E-19 137.1 28.2 228 114-349 5-290 (292)
13 TIGR00688 rarD rarD protein. T 99.7 1.9E-14 4.1E-19 132.3 23.1 195 116-321 2-255 (256)
14 COG2510 Predicted membrane pro 99.7 5.8E-16 1.3E-20 123.0 11.0 137 207-347 4-140 (140)
15 KOG4510 Permease of the drug/m 99.7 5.2E-18 1.1E-22 150.5 -1.7 228 113-348 35-327 (346)
16 TIGR00776 RhaT RhaT L-rhamnose 99.6 4.1E-13 8.9E-18 125.8 24.1 216 117-347 2-289 (290)
17 PF00892 EamA: EamA-like trans 99.6 2.3E-14 4.9E-19 116.2 11.6 125 216-345 1-125 (126)
18 COG2962 RarD Predicted permeas 99.5 2.8E-11 6.1E-16 109.9 25.8 226 115-346 6-283 (293)
19 PF06027 DUF914: Eukaryotic pr 99.4 1.1E-10 2.4E-15 110.4 24.6 231 115-348 12-307 (334)
20 TIGR03340 phn_DUF6 phosphonate 99.2 3.1E-10 6.7E-15 105.8 17.0 134 208-347 3-136 (281)
21 PRK15430 putative chlorampheni 99.2 4.9E-10 1.1E-14 105.3 17.8 139 203-345 5-144 (296)
22 TIGR00688 rarD rarD protein. T 99.2 4.3E-10 9.3E-15 103.4 16.2 138 207-346 3-142 (256)
23 PF08449 UAA: UAA transporter 99.2 9.6E-09 2.1E-13 96.9 22.6 223 124-349 70-300 (303)
24 KOG2765 Predicted membrane pro 99.1 2.7E-09 5.9E-14 99.7 14.7 223 120-348 161-392 (416)
25 PF03151 TPT: Triose-phosphate 99.1 7.7E-09 1.7E-13 87.2 15.1 138 207-345 1-152 (153)
26 PLN00411 nodulin MtN21 family 99.0 1.1E-08 2.4E-13 98.5 17.1 136 207-346 14-156 (358)
27 PRK11272 putative DMT superfam 99.0 2.2E-08 4.8E-13 93.9 18.4 132 207-346 9-141 (292)
28 PRK02971 4-amino-4-deoxy-L-ara 98.9 4.9E-08 1.1E-12 80.1 14.4 121 207-349 3-125 (129)
29 PRK11453 O-acetylserine/cystei 98.9 8.7E-08 1.9E-12 90.2 17.0 127 208-347 6-133 (299)
30 TIGR00950 2A78 Carboxylate/Ami 98.9 4.8E-08 1E-12 89.6 14.3 118 218-346 1-119 (260)
31 PF13536 EmrE: Multidrug resis 98.9 2.5E-08 5.5E-13 80.1 10.9 106 240-348 3-108 (113)
32 KOG1441 Glucose-6-phosphate/ph 98.8 6.1E-08 1.3E-12 90.9 14.2 213 134-348 35-309 (316)
33 PRK11689 aromatic amino acid e 98.8 1.1E-07 2.3E-12 89.4 15.2 130 207-347 5-138 (295)
34 PRK15051 4-amino-4-deoxy-L-ara 98.7 3.1E-07 6.8E-12 73.5 12.1 68 279-346 42-109 (111)
35 TIGR00817 tpt Tpt phosphate/ph 98.7 1.2E-06 2.7E-11 82.4 17.6 119 221-345 17-136 (302)
36 COG2962 RarD Predicted permeas 98.7 5.2E-07 1.1E-11 82.3 14.1 139 206-347 7-145 (293)
37 PTZ00343 triose or hexose phos 98.7 1.2E-06 2.6E-11 84.3 17.4 122 219-346 62-186 (350)
38 COG0697 RhaT Permeases of the 98.5 5.9E-06 1.3E-10 76.3 17.0 137 206-348 7-145 (292)
39 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.1E-06 4.5E-11 80.5 13.9 131 207-347 2-137 (290)
40 PF04142 Nuc_sug_transp: Nucle 98.4 0.0001 2.2E-09 67.4 22.5 213 114-337 13-244 (244)
41 PRK10532 threonine and homoser 98.3 2.1E-05 4.6E-10 73.8 15.7 126 205-345 11-136 (293)
42 KOG1580 UDP-galactose transpor 98.0 4.2E-05 9.2E-10 67.7 9.9 146 198-344 164-311 (337)
43 KOG1581 UDP-galactose transpor 98.0 0.00047 1E-08 63.5 16.2 142 203-345 169-312 (327)
44 PRK09541 emrE multidrug efflux 97.9 0.00012 2.6E-09 58.3 10.3 68 280-347 36-104 (110)
45 PF06800 Sugar_transport: Suga 97.9 0.0039 8.5E-08 57.3 20.7 131 202-343 134-268 (269)
46 KOG4510 Permease of the drug/m 97.9 1.1E-06 2.4E-11 79.0 -2.5 135 205-348 37-171 (346)
47 PF06027 DUF914: Eukaryotic pr 97.9 0.0004 8.7E-09 66.1 14.5 77 271-348 77-153 (334)
48 PRK10452 multidrug efflux syst 97.9 0.00013 2.9E-09 58.9 9.5 68 280-347 36-104 (120)
49 KOG2234 Predicted UDP-galactos 97.9 0.018 3.9E-07 54.5 24.8 221 115-346 89-322 (345)
50 COG2076 EmrE Membrane transpor 97.8 0.00027 5.8E-09 55.4 9.6 68 281-348 37-105 (106)
51 PRK10650 multidrug efflux syst 97.8 0.00083 1.8E-08 53.3 12.5 65 281-345 42-107 (109)
52 TIGR00803 nst UDP-galactose tr 97.7 0.00019 4.1E-09 64.4 9.0 134 204-343 83-221 (222)
53 PRK11431 multidrug efflux syst 97.6 0.00078 1.7E-08 53.1 10.2 68 281-348 36-104 (105)
54 PF08449 UAA: UAA transporter 97.6 0.002 4.3E-08 60.7 14.4 123 217-347 11-137 (303)
55 PF00893 Multi_Drug_Res: Small 97.5 0.001 2.3E-08 51.3 9.6 58 280-337 35-93 (93)
56 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00048 1E-08 64.8 9.0 118 203-345 4-121 (300)
57 KOG1444 Nucleotide-sugar trans 97.5 0.017 3.7E-07 53.8 18.6 146 200-346 151-300 (314)
58 PRK13499 rhamnose-proton sympo 97.4 0.0023 4.9E-08 61.1 12.7 137 204-346 5-153 (345)
59 KOG1443 Predicted integral mem 97.4 0.066 1.4E-06 49.7 20.7 143 202-345 160-314 (349)
60 PF04657 DUF606: Protein of un 97.4 0.0095 2.1E-07 49.5 14.2 131 207-343 2-138 (138)
61 KOG2766 Predicted membrane pro 97.3 0.00088 1.9E-08 60.3 7.6 141 200-348 160-301 (336)
62 PRK13499 rhamnose-proton sympo 97.3 0.18 3.8E-06 48.3 24.8 146 202-348 170-343 (345)
63 PF06800 Sugar_transport: Suga 97.3 0.0027 5.9E-08 58.3 10.9 110 233-349 11-125 (269)
64 KOG1582 UDP-galactose transpor 96.8 0.025 5.5E-07 51.5 12.2 141 205-348 189-334 (367)
65 COG2510 Predicted membrane pro 96.7 0.0095 2.1E-07 48.2 7.9 71 117-187 4-77 (140)
66 KOG1442 GDP-fucose transporter 96.7 0.0078 1.7E-07 54.9 8.2 147 201-348 180-329 (347)
67 PF04142 Nuc_sug_transp: Nucle 96.6 0.014 3E-07 53.4 9.4 77 271-348 15-91 (244)
68 COG5070 VRG4 Nucleotide-sugar 96.6 0.096 2.1E-06 46.5 14.0 142 203-345 152-295 (309)
69 COG3238 Uncharacterized protei 96.5 0.12 2.7E-06 43.2 13.6 139 206-349 5-149 (150)
70 COG4975 GlcU Putative glucose 96.5 0.0014 3.1E-08 58.7 2.1 132 207-349 3-139 (288)
71 KOG3912 Predicted integral mem 96.4 0.1 2.2E-06 47.9 13.6 144 202-345 172-333 (372)
72 PF10639 UPF0546: Uncharacteri 96.4 0.0072 1.6E-07 48.2 5.3 109 213-344 3-112 (113)
73 PF00892 EamA: EamA-like trans 96.2 0.035 7.6E-07 44.0 8.7 41 126-167 1-41 (126)
74 COG4975 GlcU Putative glucose 95.7 0.0075 1.6E-07 54.1 2.8 136 202-348 148-287 (288)
75 KOG4314 Predicted carbohydrate 94.8 0.17 3.7E-06 44.2 8.1 212 126-348 61-278 (290)
76 KOG4314 Predicted carbohydrate 94.4 0.04 8.6E-07 48.0 3.4 61 287-347 66-126 (290)
77 KOG2234 Predicted UDP-galactos 94.0 2.3 5.1E-05 40.4 14.4 114 232-346 45-164 (345)
78 KOG2922 Uncharacterized conser 93.8 0.022 4.8E-07 53.1 0.8 117 204-345 19-135 (335)
79 PRK02237 hypothetical protein; 93.6 0.65 1.4E-05 36.4 8.3 46 304-349 63-108 (109)
80 KOG1441 Glucose-6-phosphate/ph 93.3 0.063 1.4E-06 50.7 2.9 115 224-343 35-152 (316)
81 PF06379 RhaT: L-rhamnose-prot 93.3 1.9 4.1E-05 41.0 12.6 142 204-347 5-154 (344)
82 KOG1583 UDP-N-acetylglucosamin 92.2 1.7 3.6E-05 40.1 10.2 137 204-345 162-313 (330)
83 KOG2765 Predicted membrane pro 91.8 0.34 7.3E-06 46.3 5.6 66 283-348 168-233 (416)
84 COG5006 rhtA Threonine/homoser 91.7 3.3 7.2E-05 37.7 11.4 103 207-318 13-115 (292)
85 PF02694 UPF0060: Uncharacteri 90.8 0.55 1.2E-05 36.8 4.9 46 304-349 61-106 (107)
86 KOG1444 Nucleotide-sugar trans 89.1 16 0.00035 34.4 14.0 125 212-346 14-149 (314)
87 KOG3912 Predicted integral mem 87.6 1.3 2.8E-05 40.9 5.6 65 282-346 94-158 (372)
88 KOG1580 UDP-galactose transpor 86.0 2.7 5.9E-05 37.9 6.7 129 210-347 17-158 (337)
89 PF07857 DUF1632: CEO family ( 82.4 4.1 9E-05 37.3 6.5 127 207-346 1-134 (254)
90 COG1742 Uncharacterized conser 81.8 5.7 0.00012 31.0 6.0 46 304-349 62-107 (109)
91 PF05653 Mg_trans_NIPA: Magnes 81.5 3.4 7.5E-05 38.9 5.9 79 270-349 210-295 (300)
92 PF04342 DUF486: Protein of un 79.4 2.3 5E-05 33.2 3.2 34 312-345 74-107 (108)
93 COG3169 Uncharacterized protei 78.0 30 0.00065 26.8 9.0 35 312-346 81-115 (116)
94 KOG4831 Unnamed protein [Funct 76.9 1.9 4.1E-05 33.7 2.1 59 287-345 65-124 (125)
95 PF03151 TPT: Triose-phosphate 75.8 42 0.00091 27.4 15.3 122 117-256 1-129 (153)
96 PF07857 DUF1632: CEO family ( 72.4 19 0.0004 33.1 7.7 58 111-168 178-247 (254)
97 KOG1443 Predicted integral mem 66.3 23 0.00051 33.3 7.0 67 282-348 92-158 (349)
98 KOG1581 UDP-galactose transpor 63.1 73 0.0016 30.0 9.5 107 232-346 49-155 (327)
99 KOG1442 GDP-fucose transporter 61.3 3.5 7.7E-05 38.0 0.8 114 233-347 60-175 (347)
100 PF13536 EmrE: Multidrug resis 58.2 87 0.0019 24.4 9.8 20 149-168 2-21 (113)
101 PF04657 DUF606: Protein of un 54.0 58 0.0013 26.8 6.8 52 118-169 3-55 (138)
102 PF06570 DUF1129: Protein of u 49.1 1.9E+02 0.004 25.4 13.5 22 207-228 180-201 (206)
103 KOG2922 Uncharacterized conser 49.0 47 0.001 31.5 5.9 78 270-348 224-308 (335)
104 PF05297 Herpes_LMP1: Herpesvi 41.3 8.8 0.00019 35.5 0.0 15 115-129 26-40 (381)
105 COG3238 Uncharacterized protei 40.7 2.2E+02 0.0048 23.9 9.3 78 115-192 4-84 (150)
106 COG3086 RseC Positive regulato 40.5 62 0.0014 26.9 4.8 28 295-322 69-96 (150)
107 PF06123 CreD: Inner membrane 36.6 4.4E+02 0.0096 26.2 14.7 100 207-322 301-400 (430)
108 KOG2766 Predicted membrane pro 32.8 6.7 0.00015 35.9 -2.1 69 277-346 82-150 (336)
109 PF04246 RseC_MucC: Positive r 32.5 64 0.0014 26.2 3.8 43 297-340 64-109 (135)
110 TIGR01167 LPXTG_anchor LPXTG-m 32.0 65 0.0014 19.1 2.9 24 326-349 10-33 (34)
111 KOG1583 UDP-N-acetylglucosamin 31.7 39 0.00085 31.4 2.5 79 266-348 60-139 (330)
112 COG3476 Tryptophan-rich sensor 30.0 3.5E+02 0.0075 23.0 9.0 58 285-342 62-120 (161)
113 TIGR01299 synapt_SV2 synaptic 26.7 8.2E+02 0.018 26.2 15.3 43 211-253 601-643 (742)
114 PRK11715 inner membrane protei 25.1 7E+02 0.015 24.9 14.1 45 207-254 307-351 (436)
115 PLN00126 succinate dehydrogena 24.0 1.3E+02 0.0028 24.0 3.8 43 10-56 15-57 (129)
116 PF06570 DUF1129: Protein of u 23.7 1.9E+02 0.0041 25.4 5.5 18 117-134 112-129 (206)
117 PRK10862 SoxR reducing system 22.4 1.3E+02 0.0028 25.3 4.0 25 297-321 71-95 (154)
118 PF02659 DUF204: Domain of unk 22.1 1.3E+02 0.0028 21.0 3.4 39 298-336 24-62 (67)
119 CHL00196 psbY photosystem II p 20.4 1.5E+02 0.0032 18.5 2.8 20 207-226 7-26 (36)
No 1
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.94 E-value=1.3e-24 Score=203.85 Aligned_cols=227 Identities=17% Similarity=0.187 Sum_probs=177.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH---
Q 018761 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDAS--- 189 (350)
Q Consensus 113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~--- 189 (350)
++.+++.++++++++|+++++++|.+.+++||.++.++|++++.++++++...++++ .+++++...+..|++...
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999998876443322 234555555555543221
Q ss_pred -Hhcc----------------c--------------------------cC-CC-CCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761 190 -CFQA----------------P--------------------------AF-DE-SNSSLWGSGEWWMLLAAQSMAVGTVM 224 (350)
Q Consensus 190 -~~~~----------------P--------------------------~~-~g-~~~~~~~~G~llal~aa~~~A~~~v~ 224 (350)
.+.+ | .. .+ +.......|++++++++++||.|.+.
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~ 166 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILS 166 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 01 01 11122346999999999999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 018761 225 VRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS 304 (350)
Q Consensus 225 ~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s 304 (350)
.|+..+++++... .+..+++++++.++....+.. ...+...|..++++|+++++++|.+|++++++.++++++
T Consensus 167 ~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 167 GQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 9999888888765 456677777777766544321 124556677778999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 305 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 305 ~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
++.++||+++.+++++++||++++.+++|+++|++|++...+++
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998886544
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=2e-23 Score=195.65 Aligned_cols=225 Identities=27% Similarity=0.416 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH-----h-
Q 018761 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC-----F- 191 (350)
Q Consensus 118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~-----~- 191 (350)
.+.++...++||++++++|...++++|.+++++|++++.++++++...++++.+ +++++......|.++... +
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLP-TLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999999999999988776654433 456666665566543211 1
Q ss_pred ---cc-------------c-------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761 192 ---QA-------------P-------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVM 224 (350)
Q Consensus 192 ---~~-------------P-------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~ 224 (350)
.. | ...+.+......|++++++++++||.|.+.
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 00 1 011112223346999999999999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 018761 225 VRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS 304 (350)
Q Consensus 225 ~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s 304 (350)
.|+..++ ++...+.+++.++++.+.+.....+... ....+...|..+++++++++++++.+|++++++.++++++
T Consensus 169 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s 243 (292)
T PRK11272 169 SSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALAT 243 (292)
T ss_pred HHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 9997654 4456677888888888877766543321 1224567899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 305 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 305 ~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
.+.+++|+++++++++++||++++.+++|+++|+.|+++.++++
T Consensus 244 ~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 244 SYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=8.9e-23 Score=191.57 Aligned_cols=222 Identities=16% Similarity=0.146 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHHH-Hhc-
Q 018761 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-SGFNAWVSIFLFALVDAS-CFQ- 192 (350)
Q Consensus 116 ~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~gl~~~~-~~~- 192 (350)
+++++++.++++||++++.+|...+++||..+.++|+.++.++++++.. +++.+ ..++......+....... .+.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999887642 11211 112221111110000111 000
Q ss_pred ------c-------------c--------------------------------cCCCCC----------CcchhHHHHHH
Q 018761 193 ------A-------------P--------------------------------AFDESN----------SSLWGSGEWWM 211 (350)
Q Consensus 193 ------~-------------P--------------------------------~~~g~~----------~~~~~~G~lla 211 (350)
. | ...++. ......|++++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA 161 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence 0 1 011110 01123599999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 018761 212 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVY 291 (350)
Q Consensus 212 l~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~ 291 (350)
+++++|||.|+++.|+..++.++..... ..+.+.+.+.....+.+ ....+...|..+++.+ ++++++|.+|
T Consensus 162 l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~~-~~t~~~~~l~ 232 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQP-----AMVFSLPAIIKLLLAA-AAMGFGYAAW 232 (295)
T ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCc-----cccCCHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999987788765422 23333333333333221 1235667888888888 5789999999
Q ss_pred HHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 292 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 292 ~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++...++
T Consensus 233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999998776544
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.91 E-value=4.9e-22 Score=190.51 Aligned_cols=235 Identities=12% Similarity=0.158 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCC--CCCC-ChHHHHHHHHHHHHHH
Q 018761 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGR--KLPS-GFNAWVSIFLFALVDA 188 (350)
Q Consensus 113 ~~~~g~llll~a~~~w~~~~v~~K~~~~-~~~p~~i~~~R~~~a~l~l~~~~~~~~~--~~~~-~~~~~~~~~~~gl~~~ 188 (350)
+..+.++.|+..-+..+...++.|.+++ +++|..+.++|+.+++++++++++.+++ +.++ .++++..+.+.|+++.
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999998 7999999999999999999998876543 2222 3566677777777662
Q ss_pred HHhcc--------------------c---------------------------------------cC-CCC---------
Q 018761 189 SCFQA--------------------P---------------------------------------AF-DES--------- 199 (350)
Q Consensus 189 ~~~~~--------------------P---------------------------------------~~-~g~--------- 199 (350)
.++.. | .. .+.
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 11111 1 00 010
Q ss_pred -------------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 018761 200 -------------NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV-MATGWHMVIGGLPLMVISVLNHDPVYGESV 265 (350)
Q Consensus 200 -------------~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (350)
+...+..|++++++++++||+|+++.|+..+++++. ..++++++.+.+.+.+.....+........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 011234599999999999999999999987777664 567778888887777766654332111111
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 266 KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 266 ~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
...+.. ...++|.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|++|+++..
T Consensus 250 ~~~~~~-~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 250 IHFDIT-LITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred eccchH-HHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 223333 3457777765 56899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 018761 346 FRGS 349 (350)
Q Consensus 346 ~~~~ 349 (350)
+.++
T Consensus 328 ~~~~ 331 (358)
T PLN00411 328 WGKA 331 (358)
T ss_pred hhhh
Confidence 7654
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.91 E-value=1.6e-21 Score=183.42 Aligned_cols=227 Identities=20% Similarity=0.308 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHH-HHHHHH-HHhc---
Q 018761 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFL-FALVDA-SCFQ--- 192 (350)
Q Consensus 118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~-~~~~--- 192 (350)
.++.++++++||++++++|...+++||..+.++|+.+++++++++.. +++.+ ++....... ...... ..+.
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~ 81 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA--RPKVP--LNLLLGYGLTISFGQFAFLFCAIN 81 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999998877766542 22221 222211111 100010 1010
Q ss_pred --c------------c--------------------------------cCCC--CCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761 193 --A------------P--------------------------------AFDE--SNSSLWGSGEWWMLLAAQSMAVGTVM 224 (350)
Q Consensus 193 --~------------P--------------------------------~~~g--~~~~~~~~G~llal~aa~~~A~~~v~ 224 (350)
. | ...+ .+......|++++++++++|++|.++
T Consensus 82 ~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~ 161 (299)
T PRK11453 82 FGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIF 161 (299)
T ss_pred hcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 0111 11122336999999999999999999
Q ss_pred HHHhhccCCh---HHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 018761 225 VRWVSKYSDP---VMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL 300 (350)
Q Consensus 225 ~r~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a 300 (350)
.|+..++.+. .....+..+.+.+.........+.+.. ...+...+...|..++|+++++++++|.+|++++++.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a 241 (299)
T PRK11453 162 NKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYET 241 (299)
T ss_pred HHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9997654432 333455555555555444443332210 011234567889999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 301 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 301 ~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
++++.+.+++|+++.+++++++||+++..+++|+++|++|+++..+.+
T Consensus 242 ~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 242 WRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999876544
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=6.6e-20 Score=168.48 Aligned_cols=203 Identities=29% Similarity=0.436 Sum_probs=159.8
Q ss_pred HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHh-----cc--------
Q 018761 128 WGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF-----QA-------- 193 (350)
Q Consensus 128 w~~~~v~~K~~~~-~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~-----~~-------- 193 (350)
||++++..|..++ +.|+.++.+.|++.+.+++.++...+ ++++++...+..|.++...+ .+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8999999999887 68999999999999999888876543 23445555555544432221 11
Q ss_pred --------c--------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 018761 194 --------P--------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD 233 (350)
Q Consensus 194 --------P--------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~ 233 (350)
| ...+++......|++++++++++|+.+.+..|+..++.+
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~ 155 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG 155 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 1 011122234457999999999999999999999887777
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761 234 PV--MATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP 311 (350)
Q Consensus 234 ~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P 311 (350)
+. ....+++.++.+.+.+.....++. ...+..+|..++++++++++++|.+|++++++.++++++.+.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 156 PELLQFTGWVLLLGALLLLPFAWFLGPN------PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 43 455567888888888887665432 1235677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAI 341 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv 341 (350)
+++++++++++||++++.+++|+++++.|+
T Consensus 230 v~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=5.7e-19 Score=165.88 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHH
Q 018761 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-----SGFNAWVSIFLFALVD 187 (350)
Q Consensus 113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~-----~~~~~~~~~~~~gl~~ 187 (350)
++.+|.+++++++++||.+++..|.. +++||.++.++|++++.+++++++..+++... ..++.+......++..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI 83 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 44678999999999999999999985 67999999999999999988877655432111 1223322222222111
Q ss_pred ----HHHhcc----------------cc-------------------------------CCCCCCcchhHHHHHHHHHHH
Q 018761 188 ----ASCFQA----------------PA-------------------------------FDESNSSLWGSGEWWMLLAAQ 216 (350)
Q Consensus 188 ----~~~~~~----------------P~-------------------------------~~g~~~~~~~~G~llal~aa~ 216 (350)
...+.+ |. ......+ ..++++++++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~l~aa~ 159 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS----LPIIALGLAF 159 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----ccHHHHHHHH
Confidence 111111 20 0000111 1246889999
Q ss_pred HHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018761 217 SMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS 294 (350)
Q Consensus 217 ~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~a 294 (350)
+||.|.+..|+..++.. ....+.+.+.++.+...+.. ..+. ..........+..+++.+ +.+.++|.+|+++
T Consensus 160 ~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~g-~~t~i~~~~~~~a 233 (296)
T PRK15430 160 SFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSST--SHMGQNPMSLNLLLIAAG-IVTTVPLLCFTAA 233 (296)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCc--ccccCCcHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999754322 22333444444443322211 1110 001111122233344445 4678899999999
Q ss_pred hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 295 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 295 l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
+++.++++++++.+++|+++.+++|+++||+|++.+++|+++|++|+.+..
T Consensus 234 ~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 234 ATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876654
No 8
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.82 E-value=7.5e-18 Score=148.60 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH----HHHHhc
Q 018761 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALV----DASCFQ 192 (350)
Q Consensus 117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~----~~~~~~ 192 (350)
+++.++.+++.--....+.|.+.+.+++.-++.+|..++.++++++++..+++. .++++..+..+|.. +..+|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~--~~~~~~~~~~yGvsLg~MNl~FY~ 90 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRL--SKPQRLALLAYGVSLGGMNLLFYL 90 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhcc--ChhhhHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888889999999999999999999999999999987665444 34566666655543 444444
Q ss_pred c----------------c---------------------------cCCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018761 193 A----------------P---------------------------AFDE-SNSSLWGSGEWWMLLAAQSMAVGTVMVRWV 228 (350)
Q Consensus 193 ~----------------P---------------------------~~~g-~~~~~~~~G~llal~aa~~~A~~~v~~r~~ 228 (350)
. | ...+ ........|..++++++.||+.|.+..||.
T Consensus 91 si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~ 170 (292)
T COG5006 91 SIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA 170 (292)
T ss_pred HHHhccchhhhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence 3 1 0111 223445679999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHh
Q 018761 229 SKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~ 308 (350)
.+..|...-+...+.+++++.+|+......+. -.++.-...-+..+++++++.|.+...++++.+....+.+..
T Consensus 171 g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS 244 (292)
T COG5006 171 GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS 244 (292)
T ss_pred cccCCCchHHHHHHHHHHHHHhhhhhhhcchh------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH
Confidence 87788889999999999999999987665542 234555566677899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761 309 LTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 344 (350)
Q Consensus 309 l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~ 344 (350)
+||.++++.|++++||+++..||+|.++|+++..-.
T Consensus 245 LePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 245 LEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999877633
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.80 E-value=5.3e-17 Score=155.89 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=159.3
Q ss_pred hHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHHHHhcc------------
Q 018761 130 TAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVDASCFQA------------ 193 (350)
Q Consensus 130 ~~~v~~K~~~~~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~gl~~~~~~~~------------ 193 (350)
......|.+++.+| |..++.+|++++.+++..++..+.++.++ .++.+..++..|+++...+..
T Consensus 63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~ 142 (350)
T PTZ00343 63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSF 142 (350)
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34556899999999 99999999999988776665433232221 345667777888776543221
Q ss_pred --------c-------------------------c------CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 018761 194 --------P-------------------------A------FDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY--- 231 (350)
Q Consensus 194 --------P-------------------------~------~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~--- 231 (350)
| . ....+.+....|++++++++++++++.+..|+..++
T Consensus 143 ~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~ 222 (350)
T PTZ00343 143 THVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSE 222 (350)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 0 111233344569999999999999999999997654
Q ss_pred ----CChHHHHHHHHHHHHHHHHHHHHhhcCCCccccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHH----HhccCC
Q 018761 232 ----SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESV----KELTSSDILALLYTSIFGSAISYGVYFY----SATKGS 299 (350)
Q Consensus 232 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~gv~~t~l~~~l~~~----al~~~~ 299 (350)
.++.....+..+.+++.++|+....+.......+ ...+...+..+++. ++.+++++++|+. ++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s 301 (350)
T PTZ00343 223 IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVN 301 (350)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 4566677777899999999987755432110001 01111122334443 5667889999995 999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 300 a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+.+.++..+++|+++++++++++||++++.+++|++++++|++++++-|
T Consensus 302 ~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 302 QVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred hhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999987643
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.78 E-value=5.9e-17 Score=152.54 Aligned_cols=216 Identities=13% Similarity=0.124 Sum_probs=156.0
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHHHHHhcc-----------------
Q 018761 133 VAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQ-GRKLPSGFNAWVSIFLFALVDASCFQA----------------- 193 (350)
Q Consensus 133 v~~K~~~~~-~~p~~i~~~R~~~a~l~l~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~~----------------- 193 (350)
+..|+++++ -+|..++++|+.++.+++.+.+... +++.+.+++++..++..|+++...+..
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 578999997 6699999999999988776663322 233334577888888888876433211
Q ss_pred ---c-------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHH
Q 018761 194 ---P-------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMA 237 (350)
Q Consensus 194 ---P-------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~ 237 (350)
| .....+.+....|++++++++++|+++.+..|+..+ ++|+...
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~ 178 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNL 178 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccH
Confidence 1 011122233346999999999999999999999877 7899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc-cccc----CCHH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761 238 TGWHMVIGGLPLMVISVLNHDPVYGE-SVKE----LTSS-DILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP 311 (350)
Q Consensus 238 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~----~~~~-~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P 311 (350)
+.+++..+++.+.|+....++..... .+.. .... .+...+..+..+....+.++++++++.+|++++++.+++|
T Consensus 179 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~p 258 (302)
T TIGR00817 179 YAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKR 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhh
Confidence 99999999999999887655421100 0000 0111 1111222232233333346668999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+++++++++++||+++..+++|++++++|+++.++.|
T Consensus 259 v~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 259 VVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred hheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998755
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.77 E-value=4e-17 Score=152.22 Aligned_cols=219 Identities=15% Similarity=0.179 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh--CCCCCC-ChHHHHHHHHHHHHHHHHhcc-
Q 018761 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ--GRKLPS-GFNAWVSIFLFALVDASCFQA- 193 (350)
Q Consensus 118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~--~~~~~~-~~~~~~~~~~~gl~~~~~~~~- 193 (350)
.++.++++++|+..++..|...++.++. .++++..+.+++.|+...+ ++..+. +++.+..+...++.+...+..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999666654553 4777788888888877664 222232 233333334444332222111
Q ss_pred -------------------c--------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 018761 194 -------------------P--------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGT 222 (350)
Q Consensus 194 -------------------P--------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~ 222 (350)
| ....+.......|+.++++++++|++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 1 0001111222358889999999999999
Q ss_pred HHHHHhhccCChHH----HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018761 223 VMVRWVSKYSDPVM----ATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKG 298 (350)
Q Consensus 223 v~~r~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~ 298 (350)
+..|+..++.++.. ...+..+..++.+.+.....+... .......+..+++.+.++++++|.+|++++++.
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~ 235 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-----MFPYARQILPSATLGGLMIGGAYALVLWAMTRL 235 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998655444422 222333333222222222222210 112233556677888899999999999999999
Q ss_pred ChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761 299 SLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 343 (350)
Q Consensus 299 ~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l 343 (350)
++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus 236 ~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 236 PVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred CceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999876
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.73 E-value=5.4e-15 Score=137.06 Aligned_cols=228 Identities=26% Similarity=0.363 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHH---H
Q 018761 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVD---A 188 (350)
Q Consensus 114 ~~~g~llll~a~~~w~~~~v~~K~~~~~-~~p~~i~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~gl~~---~ 188 (350)
...+....+...+.|+.+....|...++ .++....+.|+..+.+++.+....++. +.+..+..+...+..++.. .
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 3456777888889999999999998886 778888888999999885555443321 2222211112222211111 1
Q ss_pred HHhcc-----------------c---------------------------------cCCCCCCcc--hhHHHHHHHHHHH
Q 018761 189 SCFQA-----------------P---------------------------------AFDESNSSL--WGSGEWWMLLAAQ 216 (350)
Q Consensus 189 ~~~~~-----------------P---------------------------------~~~g~~~~~--~~~G~llal~aa~ 216 (350)
.++.. | ...++.... ...|+++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 11111 1 011111111 3579999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761 217 SMAVGTVMVRWVSKYSDPVMATG-WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 295 (350)
Q Consensus 217 ~~A~~~v~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al 295 (350)
++|++.+..|+.. +.++..... ++.........+... ... . ...+...|..+.+.|+++++++|.++++++
T Consensus 165 ~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 236 (292)
T COG0697 165 LWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFL--SGF----G-APILSRAWLLLLYLGVFSTGLAYLLWYYAL 236 (292)
T ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHh--ccc----c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 667766666 444422222222221 111 0 234567889999999999989999999999
Q ss_pred ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
++.+++.++++.+++|+++++++++++||+++..+++|+.+++.|+.+..++++
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 290 (292)
T COG0697 237 RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290 (292)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999987653
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.67 E-value=1.9e-14 Score=132.32 Aligned_cols=195 Identities=14% Similarity=0.043 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CC-CChHH-HHHHHHHHHHH
Q 018761 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK------LP-SGFNA-WVSIFLFALVD 187 (350)
Q Consensus 116 ~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~------~~-~~~~~-~~~~~~~gl~~ 187 (350)
+|++++++++++||+++++.|. .+++||.++.++|++++.++++++...++++ .+ ..+++ +..+...|++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4788999999999999999998 4679999999999999998887766443321 11 11222 33344444332
Q ss_pred H----HHhcc----------------c-------------------------c------CCCCCCcchhHHHHHHHHHHH
Q 018761 188 A----SCFQA----------------P-------------------------A------FDESNSSLWGSGEWWMLLAAQ 216 (350)
Q Consensus 188 ~----~~~~~----------------P-------------------------~------~~g~~~~~~~~G~llal~aa~ 216 (350)
. .++.+ | . ......+. .++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~----~~~~l~aa~ 156 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL----PWEALVLAF 156 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHH
Confidence 2 11111 2 0 00001111 146889999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018761 217 SMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT 296 (350)
Q Consensus 217 ~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~ 296 (350)
+||.|.+..|+..++ +....... .+.......+.....+.+. ........+|..+++.|++ +.++|.+++++++
T Consensus 157 ~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~ 230 (256)
T TIGR00688 157 SFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVAIYYLLQTDFAT---VQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAAN 230 (256)
T ss_pred HHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHHHHHHHHhccCc---ccccCchhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999998543 33222211 1111111111111111110 0011122478888888866 8899999999999
Q ss_pred cCChhHHHHHHhhHHHHHHHHHHHH
Q 018761 297 KGSLTKLSSLTFLTPMFASIFGFLY 321 (350)
Q Consensus 297 ~~~a~~~s~l~~l~Pv~a~i~~~l~ 321 (350)
+.++++++++.|++|++++++++++
T Consensus 231 ~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 231 RLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=5.8e-16 Score=123.04 Aligned_cols=137 Identities=20% Similarity=0.319 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
..++++++|+++++..++.|--.+++||...+..+.++..+++..+....++.+. ....+...|..+...| +.+++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSG-la~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSG-LAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHH-HHHHH
Confidence 4689999999999999999998899999999999999999999999888876532 2235778888888777 77899
Q ss_pred HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
+..+|++|++..+++++.++.-+.|+++++++++++||+++..+++|.++|++|.+++.++
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSLR 140 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEecC
Confidence 9999999999999999999999999999999999999999999999999999999887653
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=5.2e-18 Score=150.51 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018761 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (350)
Q Consensus 113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 192 (350)
++.+|.+++..+ .++..+.++.+.+ .+.+|.+..-.|+++-.++..|..+.++.....+..++.++++.|+.|.++.+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 556778777777 6666666665553 37899999999999998888888776654431111222222333333322211
Q ss_pred c--------------------------------------------------------c-cCCC-----CC---CcchhHH
Q 018761 193 A--------------------------------------------------------P-AFDE-----SN---SSLWGSG 207 (350)
Q Consensus 193 ~--------------------------------------------------------P-~~~g-----~~---~~~~~~G 207 (350)
. | ...| .+ .+...+|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 1 1 1111 11 1223458
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761 208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 287 (350)
Q Consensus 208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~ 287 (350)
...++.++++.|.-+++.|++.|+.|....+.+..+++.+..+......+.. .+++ ...+|+.++.+|+++ .++
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~-cgkdr~l~~~lGvfg-fig 266 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAV----QLPH-CGKDRWLFVNLGVFG-FIG 266 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccce----ecCc-cccceEEEEEehhhh-hHH
Confidence 9999999999999999999999999999999999999999888876655443 2333 456788888889776 569
Q ss_pred HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
|.+.++++|+..|..++++.+++.+++.+|..++|||+|++++|+|+++|+.+.+.+.++|
T Consensus 267 QIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 267 QILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776554
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.60 E-value=4.1e-13 Score=125.76 Aligned_cols=216 Identities=16% Similarity=0.175 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----HHHhc
Q 018761 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD----ASCFQ 192 (350)
Q Consensus 117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~----~~~~~ 192 (350)
++++.++++++||++.+..|... +.++.++. |..++.+++..+....+++....++.+...++.|+.- ...+.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 46788999999999999999865 78887775 7888888777665544432222233333333333322 11111
Q ss_pred c--------------------------------c-----------------------cCCCCCC-----cchhHHHHHHH
Q 018761 193 A--------------------------------P-----------------------AFDESNS-----SLWGSGEWWML 212 (350)
Q Consensus 193 ~--------------------------------P-----------------------~~~g~~~-----~~~~~G~llal 212 (350)
+ + ..++++. .....|.++++
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l 158 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL 158 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence 1 0 0011111 22357999999
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHH---HHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHH
Q 018761 213 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMV---IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG 289 (350)
Q Consensus 213 ~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~ 289 (350)
+++++|+.|.+..|+. ++|+...+..+.. +++++...... ... +...+.+...+..|++ +++++.
T Consensus 159 ~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~Gi~-~~ia~~ 226 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAK--------PLKKYAILLNILPGLM-WGIGNF 226 (290)
T ss_pred HHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-ccc--------chHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999986 4788877544444 33333332221 011 1123333334447877 799999
Q ss_pred HHHHHhc-cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhcc
Q 018761 290 VYFYSAT-KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFR 347 (350)
Q Consensus 290 l~~~al~-~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~ 347 (350)
+|..+.+ +.+++.++++.++||+.+.++++++++|..++.++ +|.++|++|+.+....
T Consensus 227 ~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 227 FYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 9999999 99999999999999999999999999999999999 9999999999987654
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.57 E-value=2.3e-14 Score=116.21 Aligned_cols=125 Identities=30% Similarity=0.560 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761 216 QSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 295 (350)
Q Consensus 216 ~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al 295 (350)
++||.+.+..|+..++.|+...+.++.+.+.+ +.+.....+... ....+..++...++.+++++++++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 47899999999998999999999999999998 666666554431 3456777888889899888899999999999
Q ss_pred ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
++.+++.++++.+++|+++.++++++++|++++.+++|.+++++|++++.
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.50 E-value=2.8e-11 Score=109.85 Aligned_cols=226 Identities=17% Similarity=0.168 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHHHH
Q 018761 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-----PSGFNAWVSIFLFALVDAS 189 (350)
Q Consensus 115 ~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~gl~~~~ 189 (350)
.+|+++.+.+-++||......|. ++.+|+.++...|.+.+..+++......|+.. .+.++.+..+.+.++....
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~ 84 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL 84 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 46899999999999999999997 68999999999999999998887765544322 2233455555555544322
Q ss_pred Hhcc--------------------cc-------------------------CCCCCCcchhHH--HHHHHHHHHHHHHHH
Q 018761 190 CFQA--------------------PA-------------------------FDESNSSLWGSG--EWWMLLAAQSMAVGT 222 (350)
Q Consensus 190 ~~~~--------------------P~-------------------------~~g~~~~~~~~G--~llal~aa~~~A~~~ 222 (350)
-... |. ..|.....+..| -+.++.-+++|+.|.
T Consensus 85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Yg 164 (293)
T COG2962 85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYG 164 (293)
T ss_pred HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1110 20 000000001111 146778889999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhH
Q 018761 223 VMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTK 302 (350)
Q Consensus 223 v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~ 302 (350)
.+-|++ ++|+.+-....++.-..+.+.+....++... .....+...+..+...| ..|++...+|..+.++++-+.
T Consensus 165 l~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~~~~~~~~LLv~aG-~vTavpL~lf~~aa~~lpls~ 239 (293)
T COG2962 165 LLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQNANSLWLLLVLAG-LVTAVPLLLFAAAAKRLPLST 239 (293)
T ss_pred HHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhcCCchHHHHHHHhh-HHHHHHHHHHHHHHhcCCHHH
Confidence 987776 6888888888888888888877776655421 01213445666666667 557889999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 303 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 303 ~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.+.++|.+|..-.+++.+++||+++..+++.-++|-.|+++...
T Consensus 240 ~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 240 LGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888763
No 19
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.41 E-value=1.1e-10 Score=110.40 Aligned_cols=231 Identities=17% Similarity=0.099 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhc-CCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHHHHH
Q 018761 115 LLEWAVLVSPFFFWGTAMVAMKEVLP-KAG-TFFVAAFRLIPAGLLLITFASSQGRK---LPSGFNAWVSIFLFALVDAS 189 (350)
Q Consensus 115 ~~g~llll~a~~~w~~~~v~~K~~~~-~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~~~gl~~~~ 189 (350)
++..++-=.-+++-..+.+....+.+ +.+ |..-.++-++.-.++..+....|+.+ ....+++|+..++.+++...
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~ 91 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE 91 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence 34444444445566666666665554 333 44455666665555666665555322 12234667777777877554
Q ss_pred Hhcc---------------------c-----------------------------------c-CC---CCCCcchhHHHH
Q 018761 190 CFQA---------------------P-----------------------------------A-FD---ESNSSLWGSGEW 209 (350)
Q Consensus 190 ~~~~---------------------P-----------------------------------~-~~---g~~~~~~~~G~l 209 (350)
..+. | + .. +.+.+....||+
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDl 171 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDL 171 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHH
Confidence 3221 1 1 11 112345567999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHH
Q 018761 210 WMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG 289 (350)
Q Consensus 210 lal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~ 289 (350)
++++++++||+++++.++..++.|.....++..+++.++..+.....+..... ..+++.+.+..++.- .++..+-|.
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~--~~~w~~~~~~~~v~~-~~~lf~~y~ 248 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIE--SIHWTSQVIGLLVGY-ALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhh--ccCCChhhHHHHHHH-HHHHHHHHH
Confidence 99999999999999999998999999999999999999998888777655332 123444444433332 245566777
Q ss_pred HHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 290 VYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 290 l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+....++..+|+...+-..+..+++++++++++|+.+++..++|.++|++|.++....+
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 88889999999999999999999999999999999999999999999999999987643
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.25 E-value=3.1e-10 Score=105.80 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761 208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 287 (350)
Q Consensus 208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~ 287 (350)
.++.+++++++|...+..|+..++.++. ..+....+.+.+.++........ .+...+...|. .+..+.++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQV---GWSRLPATFWL-LLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccC---CCCCcchhhHH-HHHHHHHHHHHH
Confidence 4688999999999999999876665553 35555566666666655431110 12333333343 444455667789
Q ss_pred HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
+.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.+++++|++++..+
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999887643
No 21
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.24 E-value=4.9e-10 Score=105.31 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=112.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc-CCHHHHHHHHHHHH
Q 018761 203 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE-LTSSDILALLYTSI 281 (350)
Q Consensus 203 ~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~gv 281 (350)
....|.++.++++++|+...+..|.. .++++.....++.+++.+++.++.....+... .... -+...+.. ...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSY--LKTLIQTPQKIFM-LAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHH--HHHHHcCHHHHHH-HHHHH
Confidence 34469999999999999999999876 67999999999999999877776654422100 0000 12333333 33566
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
++.++.+.++++++++.+++.++++.++.|++++++++++++|+++..+++|.++.++|+.++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999998875
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.22 E-value=4.3e-10 Score=103.35 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccCCHHH-HHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYG-ESVKELTSSD-ILALLYTSIFGS 284 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ll~~gv~~t 284 (350)
|.++.++++++|+...+..|.. .+.++.++..++.+++.+.+.++.....+.... ......+... +..+...|++ .
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 80 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-I 80 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-H
Confidence 7889999999999999999985 569999999999999998877766544321000 0011112222 3334445544 6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.+.+.++++++++.+++.++.+.++.|+++++++++++||+++..+++|..+.++|+.++..
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999887643
No 23
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.16 E-value=9.6e-09 Score=96.87 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=153.1
Q ss_pred HHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHH--HHHHHHHHHHhccc--cCCCC
Q 018761 124 PFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI--FLFALVDASCFQAP--AFDES 199 (350)
Q Consensus 124 a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~--~~~gl~~~~~~~~P--~~~g~ 199 (350)
.++++..+..+...++..+|.-.....|..-....++.-....+|+.+ ++++... +..|+......... .....
T Consensus 70 ~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~--~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~ 147 (303)
T PF08449_consen 70 LSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYS--RRQYLSVLLITIGVAIFTLSDSSSSSSSNS 147 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCcccc--HHHHHHHHHHHhhHheeeeccccccccccc
Confidence 346666666777777888887777778887655555444344444443 3444332 23333222211111 01111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHh--hcCCCcccccccCCHHHHHH
Q 018761 200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVL--NHDPVYGESVKELTSSDILA 275 (350)
Q Consensus 200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 275 (350)
....+..|+.+.+++.++.|...+..+++.+ +.++...+.+....+.+...+.... .++...........+..+..
T Consensus 148 ~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~ 227 (303)
T PF08449_consen 148 SSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLY 227 (303)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHH
Confidence 1122234999999999999999999998755 4566888899999999988887776 33321111111223344555
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
++... ++..+++.+.++..++.++...+++..+.-+++++++++++|+++++.+|+|.++++.|+.+....|+
T Consensus 228 l~~~s-~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 228 LLLFS-LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 55555 55677888999999999999999999999999999999999999999999999999999999887654
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.08 E-value=2.7e-09 Score=99.69 Aligned_cols=223 Identities=15% Similarity=0.074 Sum_probs=151.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHH--HHHHHHHHHhccc---
Q 018761 120 VLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIF--LFALVDASCFQAP--- 194 (350)
Q Consensus 120 lll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~--~~gl~~~~~~~~P--- 194 (350)
+.+.-+.+|=........+++..+..........-+...+..-......+. .+..++ ...+.|......-
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~f-----t~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERF-----TLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchh-----hHHHHHHHHHhhccEEEEEecccc
Confidence 345556788888888777776655555555554444333333222222222 222222 1222221111100
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc----CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCH
Q 018761 195 AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY----SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTS 270 (350)
Q Consensus 195 ~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
..+....+....|+++++++|+.||+|.++.|+-..+ +|.....++..++..++++|...+.+... .+...-++.
T Consensus 236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~ 314 (416)
T KOG2765|consen 236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSS 314 (416)
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCC
Confidence 0111123445679999999999999999999985443 45666667777777788887655432221 112344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
.+...++..++++++++=++|.+|+-..++..+.+-..++...+++...++-|..+++.+++|++.|++|-++++..+
T Consensus 315 ~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 315 TQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred ceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 566677778899999999999999999999999999999999999999999999999999999999999999988754
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.05 E-value=7.7e-09 Score=87.19 Aligned_cols=138 Identities=18% Similarity=0.279 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC-------CHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSK-------YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL-------TSSD 272 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~ 272 (350)
|.++++++.++.+++.++.|+..+ +.++.....+....+.+.+++..+..+++......... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 678999999999999999987533 56889999999999999999998888776422211111 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 273 ILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 273 ~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
+..++..|++ ..+-....+..+++.+|...++...+..+...+++++++||+++..+++|.++.++|+++++
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4455555544 34567788889999999999999999999999999999999999999999999999998765
No 26
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.03 E-value=1.1e-08 Score=98.49 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRW-VSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 285 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~ 285 (350)
-...+++.-++|+.+.++.|. +...+++....++++.+++++++++....+... ..+..+..+|..+..+|+++ .
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHH-H
Confidence 456777788899999999996 556789999999999999999998877653211 12233466777778788777 5
Q ss_pred HHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 286 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLY------LGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 286 l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~------lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
+.+.+++.++++.+++.++++.++.|++++++++++ ++|+++..+++|.++.++|+.++..
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999 6999999999999999999887653
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.02 E-value=2.2e-08 Score=93.89 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
-.+..+...+.|+...+..|...++.+|...+.+++++++++++++....... ..+.++|...+..|++...+
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHP-------LPTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999877899999999999999999988876654321 12356677777788777677
Q ss_pred HHHHHHHHh-ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 287 SYGVYFYSA-TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 287 ~~~l~~~al-~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.+.+++.+. ++.+++.++++.++.|+++.+++++ +||+++..+++|..+.++|++++..
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 888889998 9999999999999999999999986 7999999999999999999988764
No 28
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.92 E-value=4.9e-08 Score=80.12 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
|.++.+.+.++-+.+.++.|+-.++.+....... . . ...... .+ ....+++|++++++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~-~~~~~~-------------~~---p~~~i~lgl~~~~l 60 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----I-AALLAF-------------GL---ALRAVLLGLAGYAL 60 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----H-HHHHHH-------------hc---cHHHHHHHHHHHHH
Confidence 6788889999999999999986655443221111 0 0 000000 00 11246788899999
Q ss_pred HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFL--YLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l--~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
++.+|.+++++.+++.+.++..+.+++..+.++. ++||++++.+++|.++|++|++++.+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999888888885 89999999999999999999999987654
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.89 E-value=8.7e-08 Score=90.15 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761 208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 287 (350)
Q Consensus 208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~ 287 (350)
.++.++++++|+...+..|...++.+|....+++..++++.+.++.. .+ ... +..++..|++.....
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~-------~~~---~~~~~~~g~~~~~~~ 72 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA---RP-------KVP---LNLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---CC-------CCc---hHHHHHHHHHHHHHH
Confidence 46789999999999999998778899999999999998766554431 11 111 223333454444445
Q ss_pred HHHHHHHhcc-CChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 288 YGVYFYSATK-GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 288 ~~l~~~al~~-~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
+.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.++...
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 5677788887 68899999999999999999999999999999999999999999887643
No 30
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.87 E-value=4.8e-08 Score=89.60 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhh-ccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018761 218 MAVGTVMVRWVS-KYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT 296 (350)
Q Consensus 218 ~A~~~v~~r~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~ 296 (350)
|+...+..|... ...++.....++.+.+.+.+.+..... .+..++...+..|.++..+.+.+++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----------PPLKRLLRLLLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778754 457888888888888888777664432 23456667777888888889999999999
Q ss_pred cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 297 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 297 ~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
+.+++.++++..+.|+++.+++++++||++++.+++|..+.++|+.++..
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 99999999999999999999999999999999999999999999888754
No 31
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.87 E-value=2.5e-08 Score=80.05 Aligned_cols=106 Identities=17% Similarity=0.445 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHH
Q 018761 240 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF 319 (350)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~ 319 (350)
++.+.+.+.+..+....++.. +.........+.+.+..|+++..+++.++++++++.++ .++++..+.|+++.++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLR--DLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 556666666666655543321 11122333456666667777776899999999999995 888999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 320 LYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 320 l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
++++|+++..+++|.+++++|+.++...+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999987654
No 32
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.85 E-value=6.1e-08 Score=90.88 Aligned_cols=213 Identities=12% Similarity=0.070 Sum_probs=152.8
Q ss_pred HHHHhhc--CCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHHhcc---------------
Q 018761 134 AMKEVLP--KAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS--GFNAWVSIFLFALVDASCFQA--------------- 193 (350)
Q Consensus 134 ~~K~~~~--~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~gl~~~~~~~~--------------- 193 (350)
..|++++ +.+ |..+...++..+.+.++.....+..+.++ .+..+..++..|++.......
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 4788888 555 88888888888888877776666544333 345566666666665433221
Q ss_pred ------------------------------ccCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----cCC
Q 018761 194 ------------------------------PAFD------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK----YSD 233 (350)
Q Consensus 194 ------------------------------P~~~------g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~----~~~ 233 (350)
|... .++.+....|.+.++++.+..+...++.+++.+ +.|
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~ 194 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLN 194 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 2111 234556678999999999999999999998763 478
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHhhcCCCcccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761 234 PVMATGWHMVIGGLPLM-VISVLNHDPVYGESVK-ELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP 311 (350)
Q Consensus 234 ~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P 311 (350)
+.+...++.-.+.+.++ |+....+......... ..+... ..+++.. ++...-...-+..+.+.+|...++...+.-
T Consensus 195 ~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~ 272 (316)
T KOG1441|consen 195 SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF-LILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKR 272 (316)
T ss_pred chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-HHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceE
Confidence 99999999999999888 7665544432100001 222222 2223233 333334455666899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
++.++.+|++|+|+.++.+..|.++.+.|++++.+.|
T Consensus 273 ~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 273 IVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred EEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998765
No 33
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.82 E-value=1.1e-07 Score=89.37 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
+.+++++++++|+...+..|...++++|....++++.++++++.++.. .+ ......+..++ .+.+...+
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~---~~-------~~~~~~~~~~~-~~~l~~~~ 73 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG---FP-------RLRQFPKRYLL-AGGLLFVS 73 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc---cc-------ccccccHHHHH-HHhHHHHH
Confidence 678899999999999999999889999999999999999888776531 11 11111122222 23344444
Q ss_pred HHHHHHHHhc----cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 287 SYGVYFYSAT----KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 287 ~~~l~~~al~----~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.+.+++.+++ ..++..++++.++.|+++.++++++++|+++..+++|.++.++|++++...
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4555555654 568889999999999999999999999999999999999999999887643
No 34
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.71 E-value=3.1e-07 Score=73.47 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 279 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.++++.++++.++.+++++.+.+.+.++.++.++++.+++++++||++++.+++|.++|++|++++.+
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34477888999999999999999999999999999999999999999999999999999999988764
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.69 E-value=1.2e-06 Score=82.38 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=96.5
Q ss_pred HHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018761 221 GTVMVRWVSKY-SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 299 (350)
Q Consensus 221 ~~v~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~ 299 (350)
++++.|...++ ..|.....+++.++.+.+.+... .+.. .....+.++|..++..|++. .+.+.+.+.++++.+
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLP----KRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCC----CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 34567877666 66888999999888776655521 1111 12345677888888888774 778999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 300 a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
++.++++..+.|++++++++++++|+++..+++|.+++++|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998764
No 36
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.68 E-value=5.2e-07 Score=82.31 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761 206 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 285 (350)
Q Consensus 206 ~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~ 285 (350)
.|.++++.+-+.|+..-.+.|.+ +..++..+..++.+.+..++..+.....+.....+ ..-++..+...+..+++ ..
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~l-i~ 83 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTALL-IG 83 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHHH-HH
Confidence 49999999999999999999987 67899999999999999988887666544321111 11234556666656644 45
Q ss_pred HHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 286 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 286 l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.-+..|.+|.+......+|.-+++.|++.+++|.++++|+++..|++..++..+|+......
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999876543
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.67 E-value=1.2e-06 Score=84.30 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761 219 AVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL--TSSDILALLYTSIFGSAISYGVYFYSA 295 (350)
Q Consensus 219 A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~gv~~t~l~~~l~~~al 295 (350)
..+++..|...+..+ |..+..+|++++.+.+.+.......+ .+.. ...+|..++.+|++... .+...+.++
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~llp~gl~~~~-~~~~~~~sl 135 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRK-----IPRIKSLKLFLKNFLPQGLCHLF-VHFGAVISM 135 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344677888888899 99999999999988765543221111 1112 23466777888876654 577788999
Q ss_pred ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
++.+++.++++..++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999999999999999998764
No 38
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.52 E-value=5.9e-06 Score=76.31 Aligned_cols=137 Identities=21% Similarity=0.319 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761 206 SGEWWMLLAAQSMAVGTVMVRWVSKY-SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 284 (350)
Q Consensus 206 ~G~llal~aa~~~A~~~v~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t 284 (350)
.+....+..++.|+......|...++ .+.......+...+.+...+........ .......+...+..+.+..
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRG------LRPALRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhccc------ccccccchHHHHHHHHHHH
Confidence 47788888889999999999987665 4555555557777776633333221100 0111111444555677778
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF-LYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~-l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
...+.+++.++++.+++.++++.++.|+++.++++ ++++|+++..++.|..+++.|++++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence 88999999999999999999999999999999997 66799999999999999999999988754
No 39
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.52 E-value=2.1e-06 Score=80.52 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
+.+++++++++|+...+..|+.. ..++.... ...++.++...+......+. ......+..-+..| +..++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~------~~~~~~~~~g~l~G-~~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPE------FWALSIFLVGLLSG-AFWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc------ccccHHHHHHHHHH-HHHHh
Confidence 57899999999999999999975 55555544 35556665555544433321 11122332222223 34788
Q ss_pred HHHHHHHHhccCChhHHHHHHh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHhhcc
Q 018761 287 SYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQ----LVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~-l~Pv~a~i~~~l~lgE~~~~~~----~vG~~lIl~gv~l~~~~ 347 (350)
++.+|+.++++.+.+.+-++.+ +.++++.+++.+++||+++..+ ++|.+++++|++++...
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 9999999999999999999988 9999999999999999999999 99999999999887654
No 40
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.44 E-value=0.0001 Score=67.38 Aligned_cols=213 Identities=15% Similarity=0.070 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHH---HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Q 018761 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLI---PAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC 190 (350)
Q Consensus 114 ~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 190 (350)
..+..+.+...++++.....+.-..+..+||......|.. +.+++...+ .+|+. .+++|..+.++- ++...
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~---L~r~l--s~~qW~aL~lL~-~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL---LKRRL--SRRQWLALFLLV-AGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH---HHccc--chhhHHHHHHHH-HHHhe
Confidence 3456778889999999999999999999999887777763 222222222 23333 346676555443 33333
Q ss_pred hcc-ccCC----C-C------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhh
Q 018761 191 FQA-PAFD----E-S------NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLN 256 (350)
Q Consensus 191 ~~~-P~~~----g-~------~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 256 (350)
.+. +... . . .......|.++.+.++++-++..++..|+.|+. +.........+.+.+..++.....
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~ 166 (244)
T PF04142_consen 87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS 166 (244)
T ss_pred eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333 1110 0 0 123345799999999999999999999877765 334444555566666665554443
Q ss_pred cCCCcc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 018761 257 HDPVYG--ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGA 334 (350)
Q Consensus 257 ~~~~~~--~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~ 334 (350)
+..... +.....+...|. -++..+++=.+....+|+.+...=........+++.++++++||.+++...++|+
T Consensus 167 ~~~~~~~~g~f~G~~~~~~~-----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 167 DGSAISESGFFHGYSWWVWI-----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred cccccccCCchhhcchHHHH-----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 322111 111222333333 3334444555666688999999999999999999999999999999999999998
Q ss_pred HHH
Q 018761 335 AVT 337 (350)
Q Consensus 335 ~lI 337 (350)
.++
T Consensus 242 ~~V 244 (244)
T PF04142_consen 242 ALV 244 (244)
T ss_pred ecC
Confidence 763
No 41
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.33 E-value=2.1e-05 Score=73.75 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761 205 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 284 (350)
Q Consensus 205 ~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t 284 (350)
..|..+.+++.++|+......|...++.++.....++++++++.++++..... ...+.++|...+..|++ .
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~--------~~~~~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWR--------LRFAKEQRLPLLFYGVS-L 81 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHh--------ccCCHHHHHHHHHHHHH-H
Confidence 35889999999999999999999888899999999999999988876643211 12345677666667754 5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
++.+.++++++++.+++.++.+.++.|+++.+++. |++.. ..+.++.++|++++.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence 66788899999999999999999999999988773 66654 455667778877654
No 42
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.02 E-value=4.2e-05 Score=67.73 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=110.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHH
Q 018761 198 ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILA 275 (350)
Q Consensus 198 g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (350)
|........|.++.+++-..-++....+.++++.+. ...++.+..+.+.+.+..-.++.++...-.....-.+..|+.
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~ 243 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWD 243 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHH
Confidence 334455667999999988888888888877655443 345666777777776666655554421100112223456777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761 276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 344 (350)
Q Consensus 276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~ 344 (350)
+..++ +++.+|+++.++-+...+|-.-|++..+.-.|+++.+.++++++++..||+|..++..++..=
T Consensus 244 l~l~a-i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 244 LTLLA-IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHH-HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 77777 667899999999999999999999999999999999999999999999999999999987653
No 43
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00047 Score=63.48 Aligned_cols=142 Identities=11% Similarity=0.031 Sum_probs=113.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHH
Q 018761 203 LWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTS 280 (350)
Q Consensus 203 ~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g 280 (350)
...+|..+....-++=++-+.-+.++-+ ++++..++.+..+.+++.........+.....-.....+++.+.-++...
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 4456998888888888888887777654 46778889999999998888775544433211123334566777777777
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
. +.++||.+.++-+++.++.+.+.++.+.=+++++++.+.+|.+++..|++|..+++.|+++-.
T Consensus 249 ~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 249 T-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred H-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 4 457799999999999999999999999999999999999999999999999999999987654
No 44
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.93 E-value=0.00012 Score=58.33 Aligned_cols=68 Identities=9% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.+++.++++.++.++++++|.+.+=.+ ..+.-+.+.+.++++|||++++.+++|.++|++|++.++..
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 356678899999999999999887555 55788999999999999999999999999999999998764
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.89 E-value=0.0039 Score=57.32 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=97.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHH
Q 018761 202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSI 281 (350)
Q Consensus 202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv 281 (350)
.....|.+..+.+.+.|..|.+..|.. +.|+.....-+.+.-.+...++.....+. ......|..++ .|
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~lPqaiGm~i~a~i~~~~~~~~-------~~~k~~~~nil-~G- 202 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAFLPQAIGMLIGAFIFNLFSKKP-------FFEKKSWKNIL-TG- 202 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHHHHHHHhhccccc-------ccccchHHhhH-HH-
Confidence 445679999999999999999998874 67887777776555555444444433221 11222333333 45
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHH
Q 018761 282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPL----QLVGAAVTVVAIYL 343 (350)
Q Consensus 282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~----~~vG~~lIl~gv~l 343 (350)
+...++-.+|..+.+..+.+..=.+.-+..+++.+.|.++|+|+=+.. .++|.++|++|.++
T Consensus 203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 556778999999999999999999999999999999999999997765 45677888877654
No 46
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.88 E-value=1.1e-06 Score=78.95 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761 205 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 284 (350)
Q Consensus 205 ~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t 284 (350)
+.|.++.-++ .++-..+++.++.. +.||......+.++-.++..+..+....+. +.+.....| ++.-|+.++
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v----~gp~g~R~~--LiLRg~mG~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL-ENDPMELASFRLLVRMLITYPCLIYYMQPV----IGPEGKRKW--LILRGFMGF 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh-ccChhHhhhhhhhhehhhhheEEEEEeeee----ecCCCcEEE--EEeehhhhh
Confidence 3477777777 88888888888875 567777777775555555444443333321 111122222 344565554
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
. |..+.++++++.+.+.+.++.+..|+++++++|++++|+.+....+|..+.+.|++++.|+.
T Consensus 109 t-gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 T-GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred h-HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 4 88889999999999999999999999999999999999999999999999999999988764
No 47
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.87 E-value=0.0004 Score=66.07 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
..|+.-+.+++ .-+.+.++.+.|+++.+.+-+.++.....++++++++++++++.++.+++|+++.++|+.++...+
T Consensus 77 ~~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 77 RPWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 45555555674 457799999999999999999999999999999999999999999999999999999998876543
No 48
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.87 E-value=0.00013 Score=58.89 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.+++.+++++++.+++|+++.+.+=.+ ..+.-+.+.+.+++++||++++.+++|..+|++|++.+...
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 456678899999999999999988666 46889999999999999999999999999999999988763
No 49
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.018 Score=54.46 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHH-HH--HHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHh
Q 018761 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFV-AA--FRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF 191 (350)
Q Consensus 115 ~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i-~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 191 (350)
.+..+.+...+++++...-+.+....++||... +. .+.+-.+++...++ . |+. .+++|..+. +-+.|....
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L-~--rkL--s~~Qw~Al~-lL~~Gv~~v 162 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL-R--RKL--SRLQWMALV-LLFAGVALV 162 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH-h--hhh--hHHHHHHHH-HHHHHHHHH
Confidence 345677788889999999888888888885443 22 33344444443333 2 222 335554433 333344555
Q ss_pred ccccCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCc--
Q 018761 192 QAPAFD------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVY-- 261 (350)
Q Consensus 192 ~~P~~~------g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 261 (350)
|.|... .........|....+++++.-++..++..|+.|+- +....+.....+|.++.+...+..+....
T Consensus 163 Q~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~ 242 (345)
T KOG2234|consen 163 QLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINE 242 (345)
T ss_pred hccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 542111 12234456799999999999999999999887643 33344444455666655555544432211
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 018761 262 GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAI 341 (350)
Q Consensus 262 ~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv 341 (350)
.+.....+...|..++..++.+ .+...-+++.+-..=.-...+..+++.+.++.++|-+|+...++|+.+|+.++
T Consensus 243 ~gff~G~s~~vw~vVl~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si 317 (345)
T KOG2234|consen 243 YGFFYGYSSIVWLVVLLNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI 317 (345)
T ss_pred CCccccccHHHHHHHHHHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 2223344555565555555433 33334556666666666667788999999999999999999999999999999
Q ss_pred HHhhc
Q 018761 342 YLVNF 346 (350)
Q Consensus 342 ~l~~~ 346 (350)
.++..
T Consensus 318 ~lY~~ 322 (345)
T KOG2234|consen 318 FLYSL 322 (345)
T ss_pred HHhhc
Confidence 99884
No 50
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00027 Score=55.42 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+++..++|.+..+++|++|.+.+ ++-.-+..+.+.+.|+++|||+++..+++|.+++++|++.....+
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 34567799999999999998876 667778889999999999999999999999999999999887654
No 51
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.77 E-value=0.00083 Score=53.32 Aligned_cols=65 Identities=6% Similarity=0.118 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
+++.++++++..+++|++|.+.+ ++-..+.-+.+.+.+++++||++++.+++|.++|++|++..+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999998876 555568888999999999999999999999999999998875
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.70 E-value=0.00019 Score=64.45 Aligned_cols=134 Identities=13% Similarity=-0.013 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChH--HHHHHHHHHHHHHHHHHHHhhcCCCccccc---ccCCHHHHHHHHH
Q 018761 204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV--MATGWHMVIGGLPLMVISVLNHDPVYGESV---KELTSSDILALLY 278 (350)
Q Consensus 204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~ 278 (350)
...|....+.+.++-++..+..++..++.+.. .-.....+.+.+......... ........ ...+...|
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----- 156 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISNFGFFIGYPTAVW----- 156 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhc-ccchhhccCcccCCchHHH-----
Confidence 34576677777777777778877765544321 111111122222111111111 11100000 11112222
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761 279 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 343 (350)
Q Consensus 279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l 343 (350)
.-++..++++.+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 22234566788899999999999999999999999999999999999999999999999998765
No 53
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.62 E-value=0.00078 Score=53.15 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+++.++++++...++|++|.+.+ ++-.-+..+.+.+.+++++||++++.+++|..+|++|++..+..+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 45678899999999999998876 555668889999999999999999999999999999999886543
No 54
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.58 E-value=0.002 Score=60.74 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhccC----ChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018761 217 SMAVGTVMVRWVSKYS----DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 292 (350)
Q Consensus 217 ~~A~~~v~~r~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~ 292 (350)
++..+.+...++.++. .+..+++.+.+...+...+........ ..+...+...+..+ +...++..+-+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-------KSRKIPLKKYAILS-FLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-------CCCcChHHHHHHHH-HHHHHHHHHHH
Confidence 3444556666654432 366888888888888777776655411 11122233334445 44566889999
Q ss_pred HHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 293 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 293 ~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.++++++.....++....|+.+++++++++|++.+..++++..++.+|+++....
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence 9999999999999999999999999999999999999999999999999987754
No 55
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.52 E-value=0.001 Score=51.30 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVT 337 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lI 337 (350)
.+.+.++++.++.+++|+++.+.+ ++...+..+.+.+.+++++||++++.+++|..+|
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345678899999999999999999 5556799999999999999999999999999876
No 56
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.51 E-value=0.00048 Score=64.83 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHH
Q 018761 203 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 282 (350)
Q Consensus 203 ~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~ 282 (350)
.+..|..+++.++++.+....+.|+-..+.+....-.- .. .........| +.|++
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-----------------~~----~~~~l~~~~W----~~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-----------------SG----GRSYLRRPLW----WIGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-----------------ch----hhHHHhhHHH----HHHHH
Confidence 45579999999999999999999985433222000000 00 0001111112 23334
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 283 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 283 ~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
..+++..+.+.|+...|++.++++..+..++.++++..++||+++..+++|.++++.|..++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 456677888899999999999999999999999999999999999999999999999987654
No 57
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.017 Score=53.84 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=104.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccc-ccCCHHHHHH
Q 018761 200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVY-GESV-KELTSSDILA 275 (350)
Q Consensus 200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 275 (350)
+.+....|..+++...++-+.+.+..|+..+. ..-..++.+..+.....+....+++++.+. .... ...+...+..
T Consensus 151 d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~ 230 (314)
T KOG1444|consen 151 DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV 230 (314)
T ss_pred cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence 33444458999999999999999999986443 344567788888888888888877766431 0011 1223445666
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
++..++.+.++.| +-.+..+..+++..++.....-..+.+-+.+++|++.++..++|..+-..|..+++.
T Consensus 231 ~~lScv~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 231 MLLSCVMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 6766766656544 455677778888888888677777777777777888999999999988877766654
No 58
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.44 E-value=0.0023 Score=61.10 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH----hhcCCCcccccccCCHHHHHHHHHH
Q 018761 204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISV----LNHDPVYGESVKELTSSDILALLYT 279 (350)
Q Consensus 204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~ 279 (350)
...|.++.+++++|++.+.+-.|+. ++-|-... |- +.+. +..++.. ....+...+.....+...+..-+..
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~--W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KKWSWETM--WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CCCchhHH--HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 3459999999999999999999995 44443222 32 2222 2222211 1112222222344566666655555
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHH-hhHHHHHHHHHHHHhCCCC---C----HHHHHHHHHHHHHHHHhhc
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKLSSLT-FLTPMFASIFGFLYLGETF---S----PLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~s~l~-~l~Pv~a~i~~~l~lgE~~---~----~~~~vG~~lIl~gv~l~~~ 346 (350)
| +...+++..+..++|+++.+..-++. -++.+.+.+++.+++||.. + ...++|.+++++|+++..+
T Consensus 80 G-~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 80 G-ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred H-HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5 55788999999999999999887664 5789999999999999876 2 2467888999999999987
No 59
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.38 E-value=0.066 Score=49.72 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=99.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHhhcCCCcc---cccccCCH-HH
Q 018761 202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS-----DPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTS-SD 272 (350)
Q Consensus 202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~-~~ 272 (350)
+....|..+.+++.++-++...+.+++.++. +|...+....-.-.+.++|..+.++++... ..+...+. ..
T Consensus 160 qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~ 239 (349)
T KOG1443|consen 160 QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI 239 (349)
T ss_pred ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH
Confidence 3445699999999988888888887765543 466666666666666777777777666332 11111222 12
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 273 ILALLYTSIFGSAISYG---VYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 273 ~~~ll~~gv~~t~l~~~---l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
+..+..++ ++..+++. ..+.-+.+.+....++..-..-+.+.++|.++.+|.++...|+|..+...|+....
T Consensus 240 ~rv~g~i~-l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 240 LRVIGLIS-LGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 33333333 23333443 33446788899999999999999999999999999999999999999999998873
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.37 E-value=0.0095 Score=49.49 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 285 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~ 285 (350)
..++++.++.+-++...+..++.++.+ +.....+....+.+.+..+....+++. .......+|+.. +|-+..+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~----~~~~~~~p~w~~--lGG~lG~ 75 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPS----LASLSSVPWWAY--LGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccc----cchhccCChHHh--ccHHHHH
Confidence 357889999999999999888888776 999999999999999988888776541 222222233332 2434446
Q ss_pred HHHHHHHHHhccCChhHHHHHHhh-HHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHHH
Q 018761 286 ISYGVYFYSATKGSLTKLSSLTFL-TPMFASIFGFL----YLGETFSPLQLVGAAVTVVAIYL 343 (350)
Q Consensus 286 l~~~l~~~al~~~~a~~~s~l~~l-~Pv~a~i~~~l----~lgE~~~~~~~vG~~lIl~gv~l 343 (350)
+-..+....+++++++....+... +.+.+.++..+ .-++++++.+++|.+++++|+++
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 677788889999999887766554 44555555554 23577999999999999999864
No 61
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.30 E-value=0.00088 Score=60.27 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=105.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHH
Q 018761 200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYT 279 (350)
Q Consensus 200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 279 (350)
+.+....||.+.+++|-+||+.++.-..+.++.|-...+....++|++....-... +.... ...+++ |....++
T Consensus 160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~-~~~~~--~tl~w~---~~i~~yl 233 (336)
T KOG2766|consen 160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIF-ERHHV--STLHWD---SAIFLYL 233 (336)
T ss_pred CCCCCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh-hccce--eeEeeh---HHHHHHH
Confidence 34566679999999999999999999999899999999999999999999888443 33211 112222 3333333
Q ss_pred H-HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 280 S-IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 280 g-v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
. .++..+-|.+.-..+|.-+++...+-..+.-.|+.+. ..||-..+|.-++..+.+..|.++...++
T Consensus 234 ~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 234 RFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 3 2344444555555778888888777777888888887 66788899999999999999998876554
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.30 E-value=0.18 Score=48.35 Aligned_cols=146 Identities=14% Similarity=0.036 Sum_probs=87.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH-------HHHHHh-hccCChHHHHHHHHH---HHHHHHHHH-HHh---hcCCCcccccc
Q 018761 202 SLWGSGEWWMLLAAQSMAVGT-------VMVRWV-SKYSDPVMATGWHMV---IGGLPLMVI-SVL---NHDPVYGESVK 266 (350)
Q Consensus 202 ~~~~~G~llal~aa~~~A~~~-------v~~r~~-~~~~~~~~~~~~~~~---~~~v~~~~~-~~~---~~~~~~~~~~~ 266 (350)
....+|.++++++.+.++.|. ...+.. ..+.++.....-+.+ ++....-++ +.. .++..-.....
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 456789999999999999999 443321 123455444444433 444433332 222 11110000001
Q ss_pred cCCHHHHHHH---HHHHHHHHHHHHHHHHHHhccCChhHHHH---HH-hhHHHHHHHHHHHHhCCCCC------HHHHHH
Q 018761 267 ELTSSDILAL---LYTSIFGSAISYGVYFYSATKGSLTKLSS---LT-FLTPMFASIFGFLYLGETFS------PLQLVG 333 (350)
Q Consensus 267 ~~~~~~~~~l---l~~gv~~t~l~~~l~~~al~~~~a~~~s~---l~-~l~Pv~a~i~~~l~lgE~~~------~~~~vG 333 (350)
..+...+..- -.++-+...+++.+|..+.++.+...... +. -+..+++.++|.+ ++|+=+ ...++|
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHH
Confidence 1111111111 12333556778889999888886654444 44 6777999999994 999877 667899
Q ss_pred HHHHHHHHHHhhccC
Q 018761 334 AAVTVVAIYLVNFRG 348 (350)
Q Consensus 334 ~~lIl~gv~l~~~~~ 348 (350)
.+++++|..++...+
T Consensus 329 ~vliI~g~~lig~~~ 343 (345)
T PRK13499 329 CVVIILAANIVGLGN 343 (345)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999998877643
No 63
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.29 E-value=0.0027 Score=58.35 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHH-hhHH
Q 018761 233 DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLT-FLTP 311 (350)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~-~l~P 311 (350)
+|.+-+.-..+.+.++.+...++. ++. ...+...+..-+..| +...+++...+++.++.+.+++-++. -++.
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~-~p~-----~~~~~~~~~~~~lsG-~~W~iGq~~qf~s~~~~GVS~tmPiStg~QL 83 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFR-QPA-----FSMSGTSFIVAFLSG-AFWAIGQIGQFKSFKKIGVSKTMPISTGLQL 83 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-CCC-----cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcceeeeccchhHHH
Confidence 444444444555555555444443 321 112335555555555 66788999999999999999999998 6778
Q ss_pred HHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHHHhhccCC
Q 018761 312 MFASIFGFLYLGETFSPLQLV----GAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~v----G~~lIl~gv~l~~~~~~ 349 (350)
+.+.+++.++|||+.+..+++ +.+++++|+++..++++
T Consensus 84 vg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~ 125 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK 125 (269)
T ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 889999999999998876654 66789999999987654
No 64
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.025 Score=51.53 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC---CHHHHHHHHHH
Q 018761 205 GSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL---TSSDILALLYT 279 (350)
Q Consensus 205 ~~G~llal~aa~~~A~~~v~~r~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~ 279 (350)
..|..+.-+|-++=|.-.-++.+..+. .+...++.+...+|.+.++..+...++-. ..|... +.+..+..+..
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f--~a~~fcaehp~~tyGy~~~~ 266 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELF--SAWTFCAEHPVRTYGYAFLF 266 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccch--hhhHHHHhCcHhHHHHHHHH
Confidence 347776666666666666666654443 34466778888999998888877765531 122211 23344555555
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+ ..+-+|+.....-++..+|..++.+....--+++++++++|..++|.+..-|+.+|+.|+++-...|
T Consensus 267 s-~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 267 S-LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred H-HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 5 3345578888888899999999999999999999999999999999999999999999999877655
No 65
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.72 E-value=0.0095 Score=48.17 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHH
Q 018761 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVD 187 (350)
Q Consensus 117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~gl~~ 187 (350)
..++.++++++||...++.|...+++||....+.|.+...+++..+....++.... .+|.|..+.+.|+.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~ 77 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH
Confidence 46788999999999999999999999999999999999999998888877655433 556666666555443
No 66
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.0078 Score=54.87 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=104.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC-CHHHHHHHH
Q 018761 201 SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL-TSSDILALL 277 (350)
Q Consensus 201 ~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll 277 (350)
......|.++++.+.++-|+..+..|+.....+ ....+.+..+.+.++.+|...+.++-+..-..++. +...|..+.
T Consensus 180 ~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mt 259 (347)
T KOG1442|consen 180 GTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMT 259 (347)
T ss_pred CccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHH
Confidence 344567999999999999999999998544332 36677888899999999988887665332222233 455666666
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 278 YTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 278 ~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
..|+++..++|.-. +=+|-.+|-+..+-....-..-.+++..+++|.-+..-|-|-++|+.|...+.+.|
T Consensus 260 LsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 260 LSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 66766655554321 12444555555555555666677888899999999999999999999988776543
No 67
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.61 E-value=0.014 Score=53.38 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
.+......=+ +...+...+.+.++++.+|+.-.++.-+..++++++.++++|++++..||++..+..+|+.+++...
T Consensus 15 ~~~~~~~vPA-~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 15 KDTLKLAVPA-LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 3444444445 3467788899999999999999999999999999999999999999999999999999999887643
No 68
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.60 E-value=0.096 Score=46.52 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=108.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHH
Q 018761 203 LWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTS 280 (350)
Q Consensus 203 ~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g 280 (350)
..+.|.+|+....+.-+.+....|+.-+ ...-...++|..+++..++....+.++++....-....+.+...++...|
T Consensus 152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg 231 (309)
T COG5070 152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG 231 (309)
T ss_pred ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence 3456889999999999999999987432 22335678899999999999998888776432112344555666666666
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
++++.--++--|.++-.+.+.-+++..+.-.-..+-|.++|+|+.+...+....+-..+..++.
T Consensus 232 -l~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 232 -LCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred -HHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4444455677889999999999999999999999999999999999999888876665544443
No 69
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.12 Score=43.22 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761 206 SGEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 284 (350)
Q Consensus 206 ~G~llal~aa~~~A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t 284 (350)
...+.+++++.+..+..-+.-++.+..+ |.....+....|.+.+..+.+..++... +.......|+..+ =|++ .
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~---~a~~~~~pwW~~~-GG~l-G 79 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG---LAAVASAPWWAWI-GGLL-G 79 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhccCCchHHHH-ccch-h
Confidence 3567888888888888888777766665 7788888888888888877766433321 1111122333222 1323 2
Q ss_pred HHHHHHHHHHhccCChhH-HHHHHhhHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 285 AISYGVYFYSATKGSLTK-LSSLTFLTPMFASIFGFLYLG----ETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~-~s~l~~l~Pv~a~i~~~l~lg----E~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
++-.+.......+++++. ......-+-+.+++..-+=+. .+++...++|++++++|+++.+++++
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~ 149 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFGA 149 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence 333444555667766654 444555566666666554433 56999999999999999777776654
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0014 Score=58.67 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
..+.+++=++.|+..-....|. .-+|..-+.-..+.+.++...+.++. . +.++...+..-+..| ....+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~~-~-------p~~T~~~~iv~~isG-~~Ws~ 71 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLFV-S-------PELTLTIFIVGFISG-AFWSF 71 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHheee-c-------CccchhhHHHHHHhh-hHhhh
Confidence 5688999999999988887776 33555555555555555555444432 2 234555554444445 45677
Q ss_pred HHHHHHHHhccCChhHHHHHHh-hHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccCC
Q 018761 287 SYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~-l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~~~ 349 (350)
||...+++++..+.+++.++.. ++.|-+.++|.+.|+|+.+..++ ++.+++++|+++..+++|
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 9999999999999999999865 78889999999999999998765 455688899999888765
No 71
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.45 E-value=0.1 Score=47.88 Aligned_cols=144 Identities=21% Similarity=0.216 Sum_probs=100.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcc---cccccCCHHHHHH-
Q 018761 202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTSSDILA- 275 (350)
Q Consensus 202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~- 275 (350)
+....|+++.+.+-+.-|+.+++-.|..+ +++|...++|..++|.+.+...+.....-... ..-+.-..++|..
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 44556999999999999999999877544 57899999999999976655544322111000 0011122334433
Q ss_pred --------HHHHHHHHHHHHHHHHHHH----hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761 276 --------LLYTSIFGSAISYGVYFYS----ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 343 (350)
Q Consensus 276 --------ll~~gv~~t~l~~~l~~~a----l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l 343 (350)
.++++..+..+.-.+|+.+ -+..++++=.++..+...+.=+++....-|.+...|+.|.++.+.|+++
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444444555555555542 3556888888888888888888888888899999999999999999988
Q ss_pred hh
Q 018761 344 VN 345 (350)
Q Consensus 344 ~~ 345 (350)
++
T Consensus 332 Y~ 333 (372)
T KOG3912|consen 332 YN 333 (372)
T ss_pred HH
Confidence 76
No 72
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.40 E-value=0.0072 Score=48.18 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018761 213 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 292 (350)
Q Consensus 213 ~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~ 292 (350)
+-+++|+..+-+.|+-.+..+...... +..-.... + ...|-..+ .++....|-.+|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~-----L---------------l~n~~y~i--pf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF-----L---------------LLNPKYII--PFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH-----H---------------HHhHHHHH--HHHHHHHHHHHHH
Confidence 346888999999998655544433221 21111111 0 11122222 2233344788899
Q ss_pred HHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761 293 YSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 344 (350)
Q Consensus 293 ~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~ 344 (350)
+.+.+.+.+.+.++ +.+.-+++++.++++.+|..+...++|+++|+.|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999999999 59999999999999888888999999999999998764
No 73
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.22 E-value=0.035 Score=44.05 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=34.8
Q ss_pred HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 018761 126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQG 167 (350)
Q Consensus 126 ~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~ 167 (350)
++||...++.|...++.||....++|++.+.+ ++++....+
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 41 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILG 41 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 47999999999999999999999999999997 555554443
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.0075 Score=54.15 Aligned_cols=136 Identities=20% Similarity=0.164 Sum_probs=89.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHH
Q 018761 202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSI 281 (350)
Q Consensus 202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv 281 (350)
+..-.|....+.+.+.|-.|.++.+.. ++|......-|.+ |.+...+..-..+.. ...+...|.. +.-|
T Consensus 148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f--~v~g~saiLPqAi-GMv~~ali~~~~~~~------~~~~K~t~~n-ii~G- 216 (288)
T COG4975 148 SNLKKGIVILLISTLGYVGYVVLFQLF--DVDGLSAILPQAI-GMVIGALILGFFKME------KRFNKYTWLN-IIPG- 216 (288)
T ss_pred HhhhhheeeeeeeccceeeeEeeeccc--cccchhhhhHHHH-HHHHHHHHHhhcccc------cchHHHHHHH-HhhH-
Confidence 334568888888999999999888876 3555554444332 222222222222210 1122233333 3345
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccC
Q 018761 282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~~ 348 (350)
+-.+++...+..+-++.+.+..=.+.=+..+++.+-|.++++|+=|..++ +|.+++++|..+....|
T Consensus 217 ~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 217 LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 44677888999999988888777777888899999999999999988765 67778888877765544
No 75
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.82 E-value=0.17 Score=44.15 Aligned_cols=212 Identities=13% Similarity=0.042 Sum_probs=120.1
Q ss_pred HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhccccCCCCCCcchh
Q 018761 126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWG 205 (350)
Q Consensus 126 ~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~P~~~g~~~~~~~ 205 (350)
++|-......-.++..++|......-..-++.+.+.-+...+.+.-.. +....+ .+..+.... ...........
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~-kIlaai--lAI~GiVmi---ay~DN~~a~e~ 134 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF-KILAAI--LAIGGIVMI---AYADNEHADEI 134 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh-hHHHHH--HHhCcEEEE---Eeccchhhhhh
Confidence 345444444444455566666555555555544444333333333221 111111 111111110 00111222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH---HHH-H--HHHhhcCCCcccccccCCHHHHHHHHHH
Q 018761 206 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGL---PLM-V--ISVLNHDPVYGESVKELTSSDILALLYT 279 (350)
Q Consensus 206 ~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 279 (350)
.|...++++|..-|+|-+.-|+....-+--....+....|.. +.. + +..+++- ++++......|+.+...
T Consensus 135 iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V----E~~qsFA~~PWG~l~G~ 210 (290)
T KOG4314|consen 135 IGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV----EHLQSFAAAPWGCLCGA 210 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch----HHHHHHhhCCchhhhhH
Confidence 599999999999999999999875544433333333333222 111 1 1112211 13444445567777766
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 280 SIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 280 gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+.+..+ -..+.+.++....|...|+-......-......++-+-..+...++|..+|++|-++...+.
T Consensus 211 A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 211 AGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 655433 45566778888889888888888888888888887666688899999999999988776543
No 76
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.41 E-value=0.04 Score=47.96 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
+.++|..|+++++++.++.+..-.-.|..+++|+.+||++....++.+++.+.|+++..+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 6788999999999999999999999999999999999999999999999999998877654
No 77
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.96 E-value=2.3 Score=40.45 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC------CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHH
Q 018761 232 SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL------TSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSS 305 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~ 305 (350)
+.+.+.+...=++-.+++..+.+.............. .+.+...+..=+ +..++-..+++.++...+|+.-.+
T Consensus 45 f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa-~iYalqNnl~yval~~ldaatyqV 123 (345)
T KOG2234|consen 45 FLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA-LIYALQNNLQYVALSNLDAATYQV 123 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH-HHHHHhhhHHHHHHhcCCchhhhh
Confidence 4566666666677777777776655311000001111 111222222222 234555568888999999999999
Q ss_pred HHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 306 LTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 306 l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.+-+..+.++++..++++++++..||....+..+|+.+++.
T Consensus 124 t~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 124 TYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999983
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.022 Score=53.13 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHH
Q 018761 204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG 283 (350)
Q Consensus 204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~ 283 (350)
+..|.++++.+.+..+...++.|+-.++... .. ...++. ..... .+ ++-+.|++.
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~--------------~ra~~g----g~~yl-~~---~~Ww~G~lt 73 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG--------------LRAGEG----GYGYL-KE---PLWWAGMLT 73 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc--------------ccccCC----Ccchh-hh---HHHHHHHHH
Confidence 3458888888888888888888875443221 00 000110 11111 11 233456777
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 284 SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 284 t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
.++|-.+.+.|....|++.++++..+..++.++++..+++|+++....+|.++.++|..+..
T Consensus 74 m~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 74 MIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 88899999999999999999999999999999999999999999999999998888865543
No 79
>PRK02237 hypothetical protein; Provisional
Probab=93.55 E-value=0.65 Score=36.43 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
+.+.-...+.+.+++|.+-|++|+.+.++|++++++|+.++....|
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4555667788899999999999999999999999999988866544
No 80
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.33 E-value=0.063 Score=50.74 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=78.0
Q ss_pred HHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 018761 224 MVRWVSKY---SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL 300 (350)
Q Consensus 224 ~~r~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a 300 (350)
..|+..+. .-|.+.+..+...+.+.+...-.....+. ....+...|..++-+|++ ..++..+-+.++++.+.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~----~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP----SKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYVPV 109 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC----CccccccchHHHHHHHHH-HHHHHHhcchhhhccch
Confidence 34665552 23455666655566555555543332221 122234567777778855 56699999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761 301 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 343 (350)
Q Consensus 301 ~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l 343 (350)
+....+-.++|+++.++++++.+|+.+...+.-...|+.|+.+
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI 152 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE
Confidence 9999999999999999999999999888655544444444443
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.32 E-value=1.9 Score=41.03 Aligned_cols=142 Identities=13% Similarity=-0.026 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHH
Q 018761 204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG 283 (350)
Q Consensus 204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~ 283 (350)
...|.++-.+++++-+.+.+=.||+ |+-+-...=..+.+++-++.=.+.....-|++.+-....+...+......|+ -
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~-l 82 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV-L 82 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH-H
Confidence 3469999999999999999999998 4444433333333333332222222222332222223344455666565664 4
Q ss_pred HHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhhcc
Q 018761 284 SAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGE-------TFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 284 t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE-------~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.+++-..|-.++|+++.+.. ++..-+.-+++.++--++.|+ +-....++|.+++++|+.+..+.
T Consensus 83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 68889999999999987764 444555666666665555442 23456889999999999988653
No 82
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=92.20 E-value=1.7 Score=40.11 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHH---------hhcCCCcccccccCCHHH
Q 018761 204 WGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISV---------LNHDPVYGESVKELTSSD 272 (350)
Q Consensus 204 ~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~ 272 (350)
|..|..+...+-+.-|...+.+...-+ .-++-..+++.-.......+.+.- ...+.-........-+..
T Consensus 162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~ 241 (330)
T KOG1583|consen 162 WLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSM 241 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHH
Confidence 445666555555555555555433211 236677777777666554443310 000100000000112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 273 ILALLYTSIFGSAISYGVYFYSA----TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 273 ~~~ll~~gv~~t~l~~~l~~~al----~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
|..++.. .+.|++-.+++ ...++-+++++..+.=.++.+++.++|.+.++++.|+|++++..|.++..
T Consensus 242 ~~yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 242 WVYLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444433 33444444443 44566667788889999999999999999999999999999999988765
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.84 E-value=0.34 Score=46.34 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 283 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 283 ~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
-..++.+.++.|+.+.+++-..++..+.-+|+..+|.++.+|++++..+++..+-++|++++...+
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~ 233 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD 233 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence 356789999999999999999999999999999999999999999999999999999999988763
No 84
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.66 E-value=3.3 Score=37.75 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
..++.++++++--.+.-+.|.+-..+.+.-.+.++..++++++.++.- | .....+..+|..++..| ++.+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~R----P----wr~r~~~~~~~~~~~yG-vsLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFR----P----WRRRLSKPQRLALLAYG-VSLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhh----H----HHhccChhhhHHHHHHH-HHHHH
Confidence 467778888888888888898888899999999999999888776642 1 11356778888888888 45566
Q ss_pred HHHHHHHHhccCChhHHHHHHhhHHHHHHHHH
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFG 318 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~ 318 (350)
-..+++.++++++-..+..+.++.|+...+++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 78899999999999999999999998776654
No 85
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.85 E-value=0.55 Score=36.75 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
+.+.-...+.+.+++|.+-|++|+.+.++|+.++++|+.++....|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3445556688999999999999999999999999999998877655
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=16 Score=34.37 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=81.0
Q ss_pred HHHHHHHHHHH----HHHHHhhccCC-hHH--HHHHHHHHHHHHHHHHHHhh--cCCCcccccccCCHHHHHHH--HHHH
Q 018761 212 LLAAQSMAVGT----VMVRWVSKYSD-PVM--ATGWHMVIGGLPLMVISVLN--HDPVYGESVKELTSSDILAL--LYTS 280 (350)
Q Consensus 212 l~aa~~~A~~~----v~~r~~~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l--l~~g 280 (350)
++++++|++.. +..|.+...++ +.. ....|.+.+.+.+...-... +.+. ...-....|..+ ++.+
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~----l~~~~~kk~~P~~~lf~~ 89 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP----LDLRTAKKWFPVSLLFVG 89 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC----cChHHHHHHccHHHHHHH
Confidence 45555665554 44455433333 333 33478877777666553321 1111 111223344332 2222
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
....-.+++++++.....++..+.|+++++...+++|-+++...+....++++|..+...
T Consensus 90 ------~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 90 ------MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred ------HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 344446789999999999999999999999999999999999999999988888766543
No 87
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.58 E-value=1.3 Score=40.94 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
++-..|-.+.+.++....|+--.++.-...+|+-+++..+++.+++..+|+|...+..|++++-.
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 44555778888899999999999999999999999999999999999999999999999887654
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.03 E-value=2.7 Score=37.88 Aligned_cols=129 Identities=9% Similarity=0.007 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCC-----------hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCC-HHHHHHH
Q 018761 210 WMLLAAQSMAVGTVMVRWVSK-YSD-----------PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELT-SSDILAL 276 (350)
Q Consensus 210 lal~aa~~~A~~~v~~r~~~~-~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 276 (350)
.+.+--+||=.|.+.+.|+.+ ++. ...++++++..-.++.=++..+.... ..| ...|...
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~-------~~D~t~~~~Ya 89 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT-------EIDNTPTKMYA 89 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc-------cccCCcchHHH
Confidence 344445788888888876533 222 23444455555444443333333221 111 1223332
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 277 LYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 277 l~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
. .+ ....++...-+.|+|+++=-+.-+--.-.|+=.+++|.++.+...+|..+.-..+|++|+.+.-.+
T Consensus 90 A-cs-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 90 A-CS-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred H-HH-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 2 22 456778888899999998777778888899999999999999999999999999999999887765
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=82.42 E-value=4.1 Score=37.34 Aligned_cols=127 Identities=13% Similarity=-0.072 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
|.+.+++|+++|+...+=.|+.. ..|.+..-.++.....+..+++....+.+.+ ..| ..+|..-.+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f---------~p~---amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TGDGFFFQWVMCSGIFLVGLVVNLILGFPPF---------YPW---AMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc---------eeH---HHhhhhhhhc
Confidence 45788999999999999999985 4577665555555555555555555544321 111 1112222333
Q ss_pred HHHHHHHHhccCChhHHHHHHhh-HHHHHHHHHHH-HhCCCC-----CHHHHHHHHHHHHHHHHhhc
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFL-TPMFASIFGFL-YLGETF-----SPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l-~Pv~a~i~~~l-~lgE~~-----~~~~~vG~~lIl~gv~l~~~ 346 (350)
|-.+-.-.+|.++.+..-.+-.. .-+.+-..+-+ +||+.+ .+..++|++++++|..+...
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 44445555566655544433322 33333333322 455432 35678999999998887654
No 90
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=5.7 Score=30.97 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761 304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
+.+.-...+.+.++.+++-|.+|+.+.++|+++.++|+.++....|
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3445566788899999999999999999999999999877765543
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=81.49 E-value=3.4 Score=38.88 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH-HHHHHHHHHHhCCC--CCH----HHHHHHHHHHHHHH
Q 018761 270 SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP-MFASIFGFLYLGET--FSP----LQLVGAAVTVVAIY 342 (350)
Q Consensus 270 ~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P-v~a~i~~~l~lgE~--~~~----~~~vG~~lIl~gv~ 342 (350)
+..|..++.+ +++...-....++|+++.+++.+.++++..= ..+++-+.++++|. .+. ....|..+++.|++
T Consensus 210 ~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~ 288 (300)
T PF05653_consen 210 PLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVF 288 (300)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhh
Confidence 4445444433 3445556677888999999999888777654 45555667778876 444 34567788999999
Q ss_pred HhhccCC
Q 018761 343 LVNFRGS 349 (350)
Q Consensus 343 l~~~~~~ 349 (350)
+....|+
T Consensus 289 lL~~~~~ 295 (300)
T PF05653_consen 289 LLSSSKD 295 (300)
T ss_pred eeeccCc
Confidence 9887654
No 92
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=79.45 E-value=2.3 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
.+-+.++.+++||++++..+.|.++++++++++.
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 4445678889999999999999999999987654
No 93
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.95 E-value=30 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
.+-+.++.+.++|++.+..+.|..++++|++++.+
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 34456789999999999999999999999988764
No 94
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=76.89 E-value=1.9 Score=33.73 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCChhHHHHHH-hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761 287 SYGVYFYSATKGSLTKLSSLT-FLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 345 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~-~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~ 345 (350)
+-.+|+.-+++.+-+.+.++. .+.-.|+.++|..+-.|.+....++|..+++.|+.+..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 456777888888888877765 45778899999987666688889999999999988753
No 95
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=75.79 E-value=42 Score=27.36 Aligned_cols=122 Identities=13% Similarity=0.056 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Q 018761 117 EWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDAS 189 (350)
Q Consensus 117 g~llll~a~~~w~~~~v~~K~~~~~-------~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~ 189 (350)
|.++.+.+.++-+...+..|...++ .++.++..+-...+.++++|.+...++..... ......-.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~--~~~~~~~~------ 72 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSS--FFSEIFGE------ 72 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHhhhh------
Confidence 4678899999999999999987654 67999999999999999999877654333110 00000000
Q ss_pred HhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh
Q 018761 190 CFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLN 256 (350)
Q Consensus 190 ~~~~P~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 256 (350)
+.........+.+.+++++-++++..=...++.++.+......+=..+....-..++
T Consensus 73 ----------~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f 129 (153)
T PF03151_consen 73 ----------ELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFF 129 (153)
T ss_pred ----------hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhc
Confidence 000011134455556666666666666666667776655544444444333333333
No 96
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=72.40 E-value=19 Score=33.11 Aligned_cols=58 Identities=5% Similarity=0.095 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHhhcCC--------CHHHHHHHH----HHHHHHHHHHHHHHhCC
Q 018761 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKA--------GTFFVAAFR----LIPAGLLLITFASSQGR 168 (350)
Q Consensus 111 ~~~~~~g~llll~a~~~w~~~~v~~K~~~~~~--------~p~~i~~~R----~~~a~l~l~~~~~~~~~ 168 (350)
.+++..|.++.+++.+++|.+++-++++.++- ++...++-. ++.+.+.++.....+|.
T Consensus 178 ~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn 247 (254)
T PF07857_consen 178 RKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN 247 (254)
T ss_pred ccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC
Confidence 34578899999999999999999999987754 233333333 34445555555555443
No 97
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=66.33 E-value=23 Score=33.31 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
+++++=..+-++++++++.+.-.+.-...++|..+++.++-=|++++.-..=..+|.+|+++...+.
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 5567778899999999999999999999999999999999889999999999999999998877654
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=63.07 E-value=73 Score=30.04 Aligned_cols=107 Identities=8% Similarity=0.037 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761 232 SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP 311 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P 311 (350)
.++..+...+.+.+.++.....-.... .......|...-++++ ...++-.+-+.|+++++=-+..+.-.-.-
T Consensus 49 ~~~~fL~~~q~l~~~~~s~~~l~~~k~-------~~~~~apl~~y~~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKm 120 (327)
T KOG1581|consen 49 EHSLFLVFCQRLVALLVSYAMLKWWKK-------ELSGVAPLYKYSLISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKM 120 (327)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccc-------cCCCCCchhHHhHHHH-HhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence 356777777888877777444432211 1122345666666674 44568888999999987666666666666
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
+-.++++.++.+.+.+..+++-+.+|-.|+.+...
T Consensus 121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l 155 (327)
T KOG1581|consen 121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL 155 (327)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence 66789999999999999999999999999876554
No 99
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.33 E-value=3.5 Score=38.02 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhH
Q 018761 233 DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE--LTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLT 310 (350)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~ 310 (350)
-|..++.++.++...++.............-..++ .+.+....++=+.++ ..+...+.+..+++.+.+.--+-..+.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvV-fi~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVV-FILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhe-eeeehhccceehhhcceEEEEeccchh
Confidence 46778888888888877777544322211111122 333333333333322 344667788899999998888888899
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761 311 PMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347 (350)
Q Consensus 311 Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~ 347 (350)
.+|++++.+++++++-+..-+.++.+|+.|-.+-...
T Consensus 139 tvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdq 175 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQ 175 (347)
T ss_pred hhHHHHhHHhhcccccccccceeehhheehheecccc
Confidence 9999999999999999999999999999987665543
No 100
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=58.16 E-value=87 Score=24.36 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 018761 149 AFRLIPAGLLLITFASSQGR 168 (350)
Q Consensus 149 ~~R~~~a~l~l~~~~~~~~~ 168 (350)
.+|++++.+++..+...+++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~ 21 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGR 21 (113)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 68999999999988776543
No 101
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=53.99 E-value=58 Score=26.78 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018761 118 WAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK 169 (350)
Q Consensus 118 ~llll~a~~~w~~~~v~~K~~~~~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~ 169 (350)
+++.+.+..+-+....+.-.+.+..+ |...+++-+..+.+++..+....+++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~ 55 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666777777777777766666666 99999999999999998887776653
No 102
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=49.10 E-value=1.9e+02 Score=25.45 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWV 228 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~ 228 (350)
+....+++++.++++..+-||.
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999998877765
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.00 E-value=47 Score=31.51 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhh-HHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHH
Q 018761 270 SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFL-TPMFASIFGFLYLGETF--SPL----QLVGAAVTVVAIY 342 (350)
Q Consensus 270 ~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l-~Pv~a~i~~~l~lgE~~--~~~----~~vG~~lIl~gv~ 342 (350)
+..|..++.+. .+...-....++|++..+++.+++++|. -..++++-+.++|+|.- +.. ...|...|+.|++
T Consensus 224 ~~ty~~~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~f 302 (335)
T KOG2922|consen 224 PLTWIFLLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIF 302 (335)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheee
Confidence 35566555544 4445566678899999999999888775 45666777888888873 333 4577788999998
Q ss_pred HhhccC
Q 018761 343 LVNFRG 348 (350)
Q Consensus 343 l~~~~~ 348 (350)
++.+.|
T Consensus 303 lL~~~k 308 (335)
T KOG2922|consen 303 LLHRTK 308 (335)
T ss_pred Eeeeec
Confidence 887654
No 104
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.35 E-value=8.8 Score=35.51 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh
Q 018761 115 LLEWAVLVSPFFFWG 129 (350)
Q Consensus 115 ~~g~llll~a~~~w~ 129 (350)
..+.++++.+.++|-
T Consensus 26 ~~~~llll~ail~w~ 40 (381)
T PF05297_consen 26 LFGLLLLLVAILVWF 40 (381)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777774
No 105
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.67 E-value=2.2e+02 Score=23.91 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHHHHHh
Q 018761 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSG--FNAWVSIFLFALVDASCF 191 (350)
Q Consensus 115 ~~g~llll~a~~~w~~~~v~~K~~~~~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~--~~~~~~~~~~gl~~~~~~ 191 (350)
....+..+.+..+-.....+.-.+.+..+ |....+.-+..+.++++.+.+.+.+..... .+.-++....|+++..+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 34556666777777777777666555555 999999999999988888777643222211 232345556666666554
Q ss_pred c
Q 018761 192 Q 192 (350)
Q Consensus 192 ~ 192 (350)
.
T Consensus 84 t 84 (150)
T COG3238 84 T 84 (150)
T ss_pred h
Confidence 3
No 106
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.45 E-value=62 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred hccCChhHHHHHHhhHHHHHHHHHHHHh
Q 018761 295 ATKGSLTKLSSLTFLTPMFASIFGFLYL 322 (350)
Q Consensus 295 l~~~~a~~~s~l~~l~Pv~a~i~~~l~l 322 (350)
+..-+.-..+.+.|+.|+++++++.++.
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788899999999888877663
No 107
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=36.61 E-value=4.4e+02 Score=26.23 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 286 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l 286 (350)
|.+...+.-+++-+.=++.| .++||.+........+...++++++.. + . ...+.+++..+.+..
T Consensus 301 giLFI~LTF~~fflfE~~~~---~~iHpiQY~LVGlAl~lFYlLLLSlSE-h---------i-~F~~AYliAa~a~i~-- 364 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSK---LRIHPIQYLLVGLALVLFYLLLLSLSE-H---------I-GFNLAYLIAALACIG-- 364 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHHh-h---------h-chHHHHHHHHHHHHH--
Confidence 44444443333333333333 367887765555555444444444422 1 1 233444443332222
Q ss_pred HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHh
Q 018761 287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYL 322 (350)
Q Consensus 287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~l 322 (350)
-..+|..++-+-.-.-......+.-+.+.+++.+-.
T Consensus 365 Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~ 400 (430)
T PF06123_consen 365 LISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQS 400 (430)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444443333334444455566666666543
No 108
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=32.77 E-value=6.7 Score=35.90 Aligned_cols=69 Identities=12% Similarity=0.239 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761 277 LYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346 (350)
Q Consensus 277 l~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~ 346 (350)
+.++++ .+=+.++..+|.|+.+-+-+..+..-..+...++.|++++-+-.+.++.|.++.++|+.++..
T Consensus 82 illa~~-DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 82 ILLAFV-DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred hheeEE-eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 334533 344677788899999999999999999999999999999999999999999999999877654
No 109
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.49 E-value=64 Score=26.22 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred cCChhHHHHHHhhHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Q 018761 297 KGSLTKLSSLTFLTPMFASIFGFLYLGETF---SPLQLVGAAVTVVA 340 (350)
Q Consensus 297 ~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~---~~~~~vG~~lIl~g 340 (350)
.-...+++.+.|+.|++.++.+.++. ..+ +...++++++.++.
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~~ 109 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLAL 109 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888988888887653 222 44445554444433
No 110
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=31.96 E-value=65 Score=19.12 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCC
Q 018761 326 FSPLQLVGAAVTVVAIYLVNFRGS 349 (350)
Q Consensus 326 ~~~~~~vG~~lIl~gv~l~~~~~~ 349 (350)
-....++|.+++.++.++..++++
T Consensus 10 ~~~~~~~G~~l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLLRKRKK 33 (34)
T ss_pred cHHHHHHHHHHHHHHHHHheeccc
Confidence 345566777666666665555554
No 111
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=31.67 E-value=39 Score=31.42 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=60.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761 266 KELTSSDILALLYTSIFGSAISYGVYFYSATK-GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 344 (350)
Q Consensus 266 ~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~-~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~ 344 (350)
+..+..++..+..+= .+.-.+.++|++. ++....-++..-.++..++++|++.|.+-+..|+....++-+|+++.
T Consensus 60 ~kiplk~Y~i~V~mF----F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMF----FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred CCCchhhhheehhee----eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 344556665544331 2246677888886 56666677788889999999999999999999999999999999987
Q ss_pred hccC
Q 018761 345 NFRG 348 (350)
Q Consensus 345 ~~~~ 348 (350)
...+
T Consensus 136 Tl~s 139 (330)
T KOG1583|consen 136 TLFS 139 (330)
T ss_pred Eeec
Confidence 7543
No 112
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=30.03 E-value=3.5e+02 Score=23.03 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHH
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGE-TFSPLQLVGAAVTVVAIY 342 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE-~~~~~~~vG~~lIl~gv~ 342 (350)
.-++..|.+.-....+-....+..++-+....+..+++|+ .+....+.++.+-++.+.
T Consensus 62 iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~ 120 (161)
T COG3476 62 ISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLV 120 (161)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Confidence 3367777776666555555556669999999999999998 488888887775444433
No 113
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=26.73 E-value=8.2e+02 Score=26.25 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Q 018761 211 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVIS 253 (350)
Q Consensus 211 al~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~ 253 (350)
.++.++..-...++.-.+.+++.....+...++.+++.++.+.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544555555555555555555555444
No 114
>PRK11715 inner membrane protein; Provisional
Probab=25.11 E-value=7e+02 Score=24.90 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISV 254 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 254 (350)
|.++..+.-+++-+.=++.| .++||.+........+...++++++
T Consensus 307 giLFI~LTF~~fFlfE~~~~---~~iHpiQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKK---LRIHPVQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcC---ceecHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333 3688888666555555555555554
No 115
>PLN00126 succinate dehydrogenase, cytochrome b subunit family; Provisional
Probab=23.98 E-value=1.3e+02 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=33.9
Q ss_pred cccccchhhhhcccccccccccccCccccCCCCCCCccccccccccc
Q 018761 10 SSTFNSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKR 56 (350)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (350)
-.||..|--++++.|+|.|- .+-+|.--+|--+.-|++++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~a~ 57 (129)
T PLN00126 15 DAPFALRGALGSSNSSFNNI----DHLRQSSNLEQARGYTSSPLGAQ 57 (129)
T ss_pred cCchhhhhhccCCccccccc----ccccccchHHHhcCcccCchhhc
Confidence 46899999999999999998 78888777777776666555444
No 116
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.68 E-value=1.9e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 018761 117 EWAVLVSPFFFWGTAMVA 134 (350)
Q Consensus 117 g~llll~a~~~w~~~~v~ 134 (350)
|+..+++.++..|.....
T Consensus 112 gi~tli~~~i~~G~~~~~ 129 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYF 129 (206)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 555445444555444444
No 117
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.43 E-value=1.3e+02 Score=25.26 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=16.1
Q ss_pred cCChhHHHHHHhhHHHHHHHHHHHH
Q 018761 297 KGSLTKLSSLTFLTPMFASIFGFLY 321 (350)
Q Consensus 297 ~~~a~~~s~l~~l~Pv~a~i~~~l~ 321 (350)
.-...+.+.+.|+.|+++++.+.++
T Consensus 71 e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 71 EGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777787777766543
No 118
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.10 E-value=1.3e+02 Score=21.03 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=27.0
Q ss_pred CChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 018761 298 GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAV 336 (350)
Q Consensus 298 ~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~l 336 (350)
..+...+.++.+.|..+..+|-.+-+..-+..+++|+++
T Consensus 24 ~~~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~i 62 (67)
T PF02659_consen 24 LIALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGII 62 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677778888888888877664455667777763
No 119
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.36 E-value=1.5e+02 Score=18.53 Aligned_cols=20 Identities=25% Similarity=-0.149 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018761 207 GEWWMLLAAQSMAVGTVMVR 226 (350)
Q Consensus 207 G~llal~aa~~~A~~~v~~r 226 (350)
-.++.++.|.+||+|++..-
T Consensus 7 iVl~Pil~A~~Wa~fNIg~~ 26 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGRL 26 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35678899999999998753
Done!