Query 018761
Match_columns 350
No_of_seqs 202 out of 1647
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.1E-09 3.7E-14 89.6 7.7 71 278-348 34-105 (137)
2 3b5d_A Multidrug transporter E 98.9 4.4E-08 1.5E-12 77.2 14.1 70 279-348 35-105 (110)
3 4dx5_A Acriflavine resistance 11.5 7.2E+02 0.025 26.1 9.1 51 288-338 885-935 (1057)
4 2l2t_A Receptor tyrosine-prote 11.3 2.3E+02 0.008 17.6 3.1 11 159-169 28-38 (44)
5 2ks1_B Epidermal growth factor 10.7 2.6E+02 0.009 17.3 3.2 6 163-168 33-38 (44)
6 2i68_A Protein EMRE; transmemb 10.6 5.7E+02 0.02 19.7 7.6 21 118-138 4-24 (137)
7 2v50_A Multidrug resistance pr 9.5 8.1E+02 0.028 25.7 8.6 51 288-338 352-402 (1052)
8 4dx5_A Acriflavine resistance 9.3 8.2E+02 0.028 25.6 8.5 44 295-338 359-402 (1057)
9 3ne5_A Cation efflux system pr 8.4 6.9E+02 0.023 26.2 7.4 55 285-339 888-942 (1054)
10 2v50_A Multidrug resistance pr 6.4 9.9E+02 0.034 25.0 7.5 21 314-334 910-930 (1052)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.97 E-value=1.1e-09 Score=89.64 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 278 YTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 278 ~~gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
.+++++++++|.+|++++++++++++.++ .++.|++++++++++|||++++.+++|+++|++|++++.+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 36778899999999999999999999999 899999999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.89 E-value=4.4e-08 Score=77.15 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761 279 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 348 (350)
Q Consensus 279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~ 348 (350)
.++++.++++.++.+++|+.+.+++.++ ..+.|+++++++++++||++++.+++|.++|++|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788899999999999999999998 899999999999999999999999999999999999987754
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=11.55 E-value=7.2e+02 Score=26.08 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=32.3
Q ss_pred HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 018761 288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 338 (350)
Q Consensus 288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl 338 (350)
|.+.....+........++....-+.+.+.+..++|..++...++|.++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444444555555555555555555566666777788888888888876543
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.34 E-value=2.3e+02 Score=17.57 Aligned_cols=11 Identities=9% Similarity=-0.016 Sum_probs=4.4
Q ss_pred HHHHHHHhCCC
Q 018761 159 LITFASSQGRK 169 (350)
Q Consensus 159 l~~~~~~~~~~ 169 (350)
+..+++.++++
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33333444433
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.70 E-value=2.6e+02 Score=17.28 Aligned_cols=6 Identities=17% Similarity=-0.008 Sum_probs=2.3
Q ss_pred HHHhCC
Q 018761 163 ASSQGR 168 (350)
Q Consensus 163 ~~~~~~ 168 (350)
++.+++
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333433
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=10.57 E-value=5.7e+02 Score=19.66 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHh
Q 018761 118 WAVLVSPFFFWGTAMVAMKEV 138 (350)
Q Consensus 118 ~llll~a~~~w~~~~v~~K~~ 138 (350)
+++++++.++=....++.|..
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s 24 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFS 24 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666653
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=9.51 E-value=8.1e+02 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 018761 288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 338 (350)
Q Consensus 288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl 338 (350)
+.+....++.........+....-++..+....++|..++...++|.++.+
T Consensus 352 ~lvl~~~~~s~~~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s~~gl~~~i 402 (1052)
T 2v50_A 352 FLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAI 402 (1052)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333333444443333433333344444555566678888988887665443
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.28 E-value=8.2e+02 Score=25.64 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=24.8
Q ss_pred hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 018761 295 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 338 (350)
Q Consensus 295 l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl 338 (350)
++....+....+....-++..+....++|..++...++|.++.+
T Consensus 359 ~~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 359 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 34333333333333344445555566678888888887765444
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=8.42 E-value=6.9e+02 Score=26.24 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 018761 285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVV 339 (350)
Q Consensus 285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~ 339 (350)
++-|.+.....+........++....-+++.+.+..++|..++...++|.+++++
T Consensus 888 ~li~l~L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 888 MIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 3334444445555555555555555556677777778899999999888765543
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=6.37 E-value=9.9e+02 Score=25.02 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 018761 314 ASIFGFLYLGETFSPLQLVGA 334 (350)
Q Consensus 314 a~i~~~l~lgE~~~~~~~vG~ 334 (350)
+.+.+..++|..++...++|.
T Consensus 910 g~~~~~~~~g~~l~~~~~~g~ 930 (1052)
T 2v50_A 910 GALLATSMRGLSNDVFFQVGL 930 (1052)
T ss_dssp THHHHHHHTTCCBSHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHH
Confidence 333344445555555555544
Done!