Query 018761
Match_columns 350
No_of_seqs 202 out of 1647
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 05:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018761.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018761hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.1 1.1E+02 0.0077 15.2 2.8 18 206-223 3-20 (27)
2 d1a3qa1 b.1.18.1 (A:227-327) p 7.4 91 0.0066 21.4 1.8 41 30-70 49-91 (101)
3 d1u36a_ b.1.18.1 (A:) p50 subu 6.1 1.2E+02 0.0091 20.8 2.0 38 32-69 53-92 (104)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 4.8 6E+02 0.044 18.5 7.3 45 295-339 60-104 (199)
5 d1w6ga3 d.17.2.1 (A:97-211) Co 4.7 88 0.0064 21.9 0.4 24 31-54 65-89 (115)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.7 2.6E+02 0.019 14.9 2.3 21 112-132 15-35 (37)
7 d1gjia1 b.1.18.1 (A:182-281) p 4.3 1.5E+02 0.011 20.2 1.3 39 30-69 48-88 (100)
8 d1my7a_ b.1.18.1 (A:) p65 subu 4.3 1.8E+02 0.013 20.0 1.9 39 31-69 49-89 (107)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 3.8 3E+02 0.022 13.7 2.3 13 315-327 16-28 (30)
10 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 3.3 99 0.0072 18.0 -0.4 8 2-9 25-32 (51)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.05 E-value=1.1e+02 Score=15.23 Aligned_cols=18 Identities=17% Similarity=-0.032 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018761 206 SGEWWMLLAAQSMAVGTV 223 (350)
Q Consensus 206 ~G~llal~aa~~~A~~~v 223 (350)
.|.+..-+++++||.|--
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 467777788888887743
No 2
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.36 E-value=91 Score=21.41 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=29.7
Q ss_pred ccccCccccCCCC--CCCccccccccccccceeeecccccccc
Q 018761 30 KLSSNHVAHAPPS--LFSPYITINSFKKRCIIVTNCTTTNKKN 70 (350)
Q Consensus 30 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (350)
+.+++.+||-|.| +-|||-++.....-+.++..+++++++.
T Consensus 49 ~f~~~dvh~q~aIvfktPpY~~~~I~~pV~V~i~l~r~sd~~~ 91 (101)
T d1a3qa1 49 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDV 91 (101)
T ss_dssp BCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEEETTTCCB
T ss_pred EeCHHHcccceEEEEECCCCCCcccCCcEEEEEEEEECCCCCc
Confidence 3456777887765 6789999988888888887776554443
No 3
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.09 E-value=1.2e+02 Score=20.76 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=27.6
Q ss_pred ccCccccCC--CCCCCccccccccccccceeeeccccccc
Q 018761 32 SSNHVAHAP--PSLFSPYITINSFKKRCIIVTNCTTTNKK 69 (350)
Q Consensus 32 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (350)
+++.+||.| ..+-|||-+......-+.++..+++.+++
T Consensus 53 ~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~l~r~sd~~ 92 (104)
T d1u36a_ 53 SPTDVHRQFAICFKTPKYKDVNITKPASVFVQLRRKSDLE 92 (104)
T ss_dssp CGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEECTTTCC
T ss_pred ChhhcccceEEEEECCCCCCCccCCcEEEEEEEEeCCCCC
Confidence 445667666 55778999988888888888777765444
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.80 E-value=6e+02 Score=18.54 Aligned_cols=45 Identities=9% Similarity=0.162 Sum_probs=29.0
Q ss_pred hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 018761 295 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVV 339 (350)
Q Consensus 295 l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~ 339 (350)
++...+.....+.....+...+....++|..++.....+..++++
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 455555555555555556666666677788888877777665554
No 5
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=4.70 E-value=88 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.6
Q ss_pred cccCccccCCCCC-CCccccccccc
Q 018761 31 LSSNHVAHAPPSL-FSPYITINSFK 54 (350)
Q Consensus 31 ~~~~~~~~~~~~~-~~~~~~~~~~~ 54 (350)
.+++.++.|+||| |++.-+-...+
T Consensus 65 ~~p~~N~YA~PIeGl~~vvDl~~~~ 89 (115)
T d1w6ga3 65 DFPEDSAWAHPVDGLVAYVDVVSKE 89 (115)
T ss_dssp SSTTCCGGGSBCTTEEEEEETTTTE
T ss_pred cCCCCCccccccCccEEEEECCCCE
Confidence 4568889999999 99887754444
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.69 E-value=2.6e+02 Score=14.94 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHhhHH
Q 018761 112 LGMLLEWAVLVSPFFFWGTAM 132 (350)
Q Consensus 112 ~~~~~g~llll~a~~~w~~~~ 132 (350)
..-.+|.++....+++|+..+
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344567776666667776543
No 7
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=4.33 E-value=1.5e+02 Score=20.22 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=25.9
Q ss_pred ccccCccccCCCC--CCCccccccccccccceeeeccccccc
Q 018761 30 KLSSNHVAHAPPS--LFSPYITINSFKKRCIIVTNCTTTNKK 69 (350)
Q Consensus 30 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (350)
+.+++..||.|.| .-|||.+ .....-+.++..+++++++
T Consensus 48 ~f~~~dvh~q~aIvf~tP~Y~~-~I~~pV~V~i~l~r~sd~~ 88 (100)
T d1gjia1 48 SFSQADVHRQVAIVFRTPPFLR-DITEPITVKMQLRRPSDQE 88 (100)
T ss_dssp BCCGGGEETTTEEEEECCCCSS-CCSSCEEEEEEEEEGGGTE
T ss_pred EECHHHeecceEEEEECCCCCC-CCCCCEEEEEEEEECCCCc
Confidence 3456788888877 4566654 6666666777777655444
No 8
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.31 E-value=1.8e+02 Score=19.99 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=28.6
Q ss_pred cccCccccCC--CCCCCccccccccccccceeeeccccccc
Q 018761 31 LSSNHVAHAP--PSLFSPYITINSFKKRCIIVTNCTTTNKK 69 (350)
Q Consensus 31 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (350)
.+++.+||-| ..+-|||-++.....-+.++..+++++++
T Consensus 49 f~~~dvh~Q~aIvfktPpY~~~~I~~pV~V~i~l~r~sd~~ 89 (107)
T d1my7a_ 49 FSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRE 89 (107)
T ss_dssp CCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEEEEETTTTE
T ss_pred cCHHHcccccEEEEECCCCCCCcCCCCEEEEEEEEECCCCC
Confidence 3556777766 45778999998888888888877655444
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.85 E-value=3e+02 Score=13.69 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=6.6
Q ss_pred HHHHHHHhCCCCC
Q 018761 315 SIFGFLYLGETFS 327 (350)
Q Consensus 315 ~i~~~l~lgE~~~ 327 (350)
..+=.+++.|+|.
T Consensus 16 lfffaiffreppr 28 (30)
T d2axtt1 16 LFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 3333445666653
No 10
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.27 E-value=99 Score=18.01 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=1.8
Q ss_pred cccccccc
Q 018761 2 AWWSSASA 9 (350)
Q Consensus 2 ~~~~~~~~ 9 (350)
.||+++++
T Consensus 25 s~w~~~~~ 32 (51)
T g6rlx.1 25 STWELYSA 32 (51)
T ss_dssp SCC-----
T ss_pred chhccchh
Confidence 46655444
Done!