Query 018762
Match_columns 350
No_of_seqs 277 out of 1033
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1609 Protein involved in mR 99.7 1.2E-18 2.5E-23 164.3 5.6 204 95-298 69-282 (323)
2 PHA02825 LAP/PHD finger-like p 99.6 2.5E-16 5.4E-21 140.5 5.7 58 100-161 4-61 (162)
3 COG5183 SSM4 Protein involved 99.6 1.9E-16 4.2E-21 167.3 5.7 67 102-174 10-76 (1175)
4 smart00744 RINGv The RING-vari 99.6 1.6E-16 3.6E-21 116.4 3.2 49 106-155 1-49 (49)
5 PHA02862 5L protein; Provision 99.6 2E-15 4.3E-20 133.1 3.5 53 104-160 2-54 (156)
6 PF12906 RINGv: RING-variant d 99.5 1.5E-15 3.3E-20 110.4 2.2 47 107-154 1-47 (47)
7 KOG3053 Uncharacterized conser 99.3 2.4E-12 5.3E-17 122.6 3.9 61 101-161 17-84 (293)
8 KOG4628 Predicted E3 ubiquitin 98.7 1.4E-08 2.9E-13 101.0 3.3 50 105-160 230-279 (348)
9 PF13639 zf-RING_2: Ring finge 98.6 1.2E-08 2.6E-13 72.0 2.0 44 105-155 1-44 (44)
10 COG5540 RING-finger-containing 98.1 2.1E-06 4.5E-11 84.3 3.3 52 102-159 321-372 (374)
11 PF12678 zf-rbx1: RING-H2 zinc 98.0 3.3E-06 7.2E-11 66.3 3.1 44 105-155 20-73 (73)
12 PLN03208 E3 ubiquitin-protein 97.9 7.9E-06 1.7E-10 75.7 3.9 51 102-160 16-80 (193)
13 PHA02929 N1R/p28-like protein; 97.9 8.1E-06 1.8E-10 77.8 3.6 52 103-161 173-229 (238)
14 COG5243 HRD1 HRD ubiquitin lig 97.8 1.4E-05 3E-10 80.5 3.7 55 98-159 281-345 (491)
15 PF13920 zf-C3HC4_3: Zinc fing 97.8 1.8E-05 3.8E-10 57.3 2.7 48 103-160 1-49 (50)
16 cd00162 RING RING-finger (Real 97.7 2.6E-05 5.6E-10 52.6 2.9 45 106-158 1-45 (45)
17 PF12861 zf-Apc11: Anaphase-pr 97.6 4.5E-05 9.8E-10 62.5 3.4 53 104-160 21-83 (85)
18 PF11793 FANCL_C: FANCL C-term 97.4 4.3E-05 9.4E-10 59.8 0.9 53 104-159 2-66 (70)
19 KOG0802 E3 ubiquitin ligase [P 97.4 7.2E-05 1.6E-09 78.2 2.7 49 103-158 290-340 (543)
20 smart00184 RING Ring finger. E 97.4 0.00011 2.4E-09 47.7 2.6 39 107-154 1-39 (39)
21 PHA02926 zinc finger-like prot 97.3 0.00019 4.1E-09 68.2 3.5 55 102-161 168-232 (242)
22 PF00097 zf-C3HC4: Zinc finger 97.2 0.00027 5.8E-09 48.7 2.8 41 107-154 1-41 (41)
23 KOG1493 Anaphase-promoting com 97.1 0.00017 3.7E-09 58.4 1.0 50 106-160 22-82 (84)
24 COG5219 Uncharacterized conser 97.1 0.00021 4.5E-09 78.8 1.5 55 103-160 1468-1524(1525)
25 KOG0823 Predicted E3 ubiquitin 97.0 0.00082 1.8E-08 63.9 4.9 53 101-161 44-97 (230)
26 KOG0828 Predicted E3 ubiquitin 97.0 0.00046 1E-08 71.8 2.9 58 96-159 563-634 (636)
27 PF13923 zf-C3HC4_2: Zinc fing 96.8 0.00073 1.6E-08 46.6 2.2 38 107-154 1-39 (39)
28 KOG0317 Predicted E3 ubiquitin 96.7 0.002 4.3E-08 63.1 4.7 53 98-160 233-285 (293)
29 smart00504 Ubox Modified RING 96.7 0.0017 3.8E-08 48.0 3.3 45 105-159 2-46 (63)
30 PF09679 TraQ: Type-F conjugat 96.6 0.0013 2.8E-08 54.3 2.5 47 247-299 16-62 (93)
31 PF14634 zf-RING_5: zinc-RING 96.5 0.002 4.3E-08 45.7 2.4 44 106-156 1-44 (44)
32 KOG4265 Predicted E3 ubiquitin 96.2 0.0055 1.2E-07 61.5 4.3 52 100-161 286-338 (349)
33 KOG0827 Predicted E3 ubiquitin 96.0 0.0039 8.4E-08 63.5 2.5 46 104-155 4-52 (465)
34 TIGR00599 rad18 DNA repair pro 95.9 0.0051 1.1E-07 62.8 2.6 48 103-160 25-72 (397)
35 KOG0320 Predicted E3 ubiquitin 95.6 0.017 3.7E-07 53.4 4.8 60 92-159 119-178 (187)
36 KOG0804 Cytoplasmic Zn-finger 95.5 0.0063 1.4E-07 62.8 1.5 50 101-159 172-222 (493)
37 COG5194 APC11 Component of SCF 95.3 0.013 2.7E-07 48.1 2.6 31 123-160 52-82 (88)
38 KOG1734 Predicted RING-contain 95.2 0.0047 1E-07 60.4 -0.3 52 104-160 224-282 (328)
39 KOG0825 PHD Zn-finger protein 95.1 0.022 4.8E-07 62.4 4.2 53 103-162 122-174 (1134)
40 PF15227 zf-C3HC4_4: zinc fing 94.3 0.029 6.4E-07 39.8 2.0 40 107-154 1-42 (42)
41 KOG1645 RING-finger-containing 93.8 0.043 9.2E-07 56.4 2.7 53 103-160 3-57 (463)
42 PF14570 zf-RING_4: RING/Ubox 93.4 0.068 1.5E-06 39.7 2.6 46 107-159 1-48 (48)
43 KOG2930 SCF ubiquitin ligase, 93.2 0.053 1.1E-06 46.4 1.9 31 123-160 79-109 (114)
44 PF04564 U-box: U-box domain; 93.1 0.058 1.2E-06 42.1 1.9 49 103-160 3-51 (73)
45 PF13445 zf-RING_UBOX: RING-ty 93.1 0.064 1.4E-06 38.6 2.0 40 107-152 1-43 (43)
46 KOG1785 Tyrosine kinase negati 92.8 0.042 9.1E-07 56.5 1.0 49 105-161 370-418 (563)
47 KOG4445 Uncharacterized conser 92.6 0.038 8.2E-07 55.0 0.4 52 104-160 115-187 (368)
48 KOG2177 Predicted E3 ubiquitin 91.4 0.092 2E-06 46.7 1.3 46 101-156 10-55 (386)
49 KOG1941 Acetylcholine receptor 90.9 0.094 2E-06 53.9 1.0 52 103-159 364-416 (518)
50 PF05883 Baculo_RING: Baculovi 90.0 0.16 3.4E-06 45.2 1.5 43 103-145 25-68 (134)
51 KOG1039 Predicted E3 ubiquitin 89.4 0.25 5.4E-06 49.9 2.6 55 102-161 159-223 (344)
52 TIGR00570 cdk7 CDK-activating 88.7 0.4 8.6E-06 47.9 3.3 51 104-160 3-55 (309)
53 COG5574 PEX10 RING-finger-cont 88.0 0.43 9.4E-06 46.7 3.1 53 99-160 210-263 (271)
54 KOG1428 Inhibitor of type V ad 87.5 0.44 9.5E-06 55.9 3.1 55 102-161 3484-3546(3738)
55 KOG1952 Transcription factor N 86.0 0.51 1.1E-05 52.5 2.6 59 103-165 190-253 (950)
56 PF14569 zf-UDP: Zinc-binding 84.8 1 2.2E-05 36.8 3.2 53 103-161 8-64 (80)
57 PF07800 DUF1644: Protein of u 84.4 1 2.2E-05 41.2 3.4 53 103-160 1-92 (162)
58 PF10367 Vps39_2: Vacuolar sor 84.1 0.35 7.7E-06 38.9 0.3 33 103-141 77-109 (109)
59 COG5432 RAD18 RING-finger-cont 83.5 0.54 1.2E-05 47.0 1.3 48 104-161 25-72 (391)
60 PF10272 Tmpp129: Putative tra 83.3 1.3 2.9E-05 45.0 4.0 38 122-162 306-354 (358)
61 KOG2164 Predicted E3 ubiquitin 83.2 0.79 1.7E-05 48.4 2.4 49 104-160 186-237 (513)
62 COG5236 Uncharacterized conser 81.1 2.2 4.7E-05 43.7 4.5 52 102-161 59-110 (493)
63 PF08746 zf-RING-like: RING-li 81.0 0.77 1.7E-05 32.9 1.0 22 133-154 22-43 (43)
64 KOG0801 Predicted E3 ubiquitin 80.4 0.73 1.6E-05 42.6 0.9 25 103-127 176-200 (205)
65 KOG0287 Postreplication repair 80.1 0.7 1.5E-05 47.0 0.8 47 104-160 23-69 (442)
66 PLN02189 cellulose synthase 80.1 1.2 2.6E-05 50.7 2.6 53 103-160 33-88 (1040)
67 KOG0802 E3 ubiquitin ligase [P 79.3 2 4.4E-05 45.3 3.9 53 94-160 469-521 (543)
68 COG5034 TNG2 Chromatin remodel 78.7 0.91 2E-05 44.4 1.0 30 126-157 241-270 (271)
69 KOG1002 Nucleotide excision re 77.7 1.3 2.9E-05 47.4 1.9 50 102-159 534-586 (791)
70 KOG4172 Predicted E3 ubiquitin 77.3 1.5 3.3E-05 33.9 1.6 49 105-161 8-56 (62)
71 KOG3970 Predicted E3 ubiquitin 77.2 1.8 3.8E-05 42.0 2.5 50 104-159 50-105 (299)
72 COG5152 Uncharacterized conser 76.6 1.7 3.8E-05 41.4 2.2 53 95-160 190-242 (259)
73 PLN02638 cellulose synthase A 76.2 2.1 4.6E-05 49.0 3.1 51 103-159 16-70 (1079)
74 PLN02436 cellulose synthase A 75.1 2 4.4E-05 49.1 2.6 53 103-160 35-90 (1094)
75 PLN02195 cellulose synthase A 75.0 2.6 5.6E-05 47.9 3.3 51 103-159 5-59 (977)
76 KOG0824 Predicted E3 ubiquitin 72.3 2.2 4.8E-05 42.7 1.8 48 104-160 7-54 (324)
77 PLN02400 cellulose synthase 71.5 2.2 4.9E-05 48.8 1.9 52 103-160 35-90 (1085)
78 PLN02915 cellulose synthase A 70.4 4 8.7E-05 46.7 3.5 52 103-160 14-69 (1044)
79 COG5175 MOT2 Transcriptional r 68.8 4.7 0.0001 41.2 3.3 52 103-161 13-66 (480)
80 PF05290 Baculo_IE-1: Baculovi 67.7 4.1 8.8E-05 36.5 2.3 55 104-161 80-134 (140)
81 KOG0825 PHD Zn-finger protein 63.6 3 6.4E-05 46.6 0.8 52 98-155 209-264 (1134)
82 KOG4692 Predicted E3 ubiquitin 61.0 5.6 0.00012 41.0 2.1 49 102-160 420-468 (489)
83 PF14446 Prok-RING_1: Prokaryo 58.9 8.5 0.00018 29.4 2.3 45 103-158 4-51 (54)
84 KOG3039 Uncharacterized conser 54.9 31 0.00067 34.1 5.9 52 102-160 219-271 (303)
85 KOG1940 Zn-finger protein [Gen 53.2 7.2 0.00016 38.5 1.5 44 106-156 160-204 (276)
86 KOG1973 Chromatin remodeling p 51.7 7.2 0.00016 38.0 1.2 54 101-159 216-270 (274)
87 KOG3899 Uncharacterized conser 51.4 9.1 0.0002 38.5 1.8 36 125-163 323-369 (381)
88 PF11789 zf-Nse: Zinc-finger o 51.4 7.4 0.00016 29.5 0.9 42 104-153 11-53 (57)
89 KOG4159 Predicted E3 ubiquitin 51.3 9.8 0.00021 39.3 2.1 50 102-161 82-131 (398)
90 PRK05978 hypothetical protein; 50.4 60 0.0013 29.4 6.7 19 141-161 47-65 (148)
91 KOG4323 Polycomb-like PHD Zn-f 49.2 8.3 0.00018 40.7 1.2 55 105-162 169-229 (464)
92 PF01440 Gemini_AL2: Geminivir 48.6 3.2 6.9E-05 37.0 -1.6 34 119-155 31-64 (134)
93 PRK13727 conjugal transfer pil 48.5 13 0.00029 30.2 2.0 42 259-300 22-63 (80)
94 PF10947 DUF2628: Protein of u 46.7 31 0.00066 28.5 4.0 61 239-300 47-107 (108)
95 PF04641 Rtf2: Rtf2 RING-finge 45.7 23 0.0005 34.0 3.6 54 101-162 110-164 (260)
96 KOG2879 Predicted E3 ubiquitin 45.4 27 0.00059 34.8 4.0 51 103-161 238-289 (298)
97 KOG0311 Predicted E3 ubiquitin 44.8 4.5 9.8E-05 41.3 -1.4 50 103-160 42-91 (381)
98 TIGR02741 TraQ type-F conjugat 44.6 18 0.00038 29.5 2.1 48 247-300 16-63 (80)
99 KOG0826 Predicted E3 ubiquitin 44.5 22 0.00047 36.3 3.3 56 95-159 291-346 (357)
100 PF07895 DUF1673: Protein of u 44.3 88 0.0019 29.3 7.1 25 267-295 151-175 (205)
101 KOG2114 Vacuolar assembly/sort 44.0 12 0.00025 42.3 1.4 44 105-161 841-885 (933)
102 KOG0309 Conserved WD40 repeat- 43.2 17 0.00037 40.8 2.4 41 104-152 1028-1068(1081)
103 PRK08382 putative monovalent c 43.1 45 0.00099 31.4 5.0 44 182-238 25-68 (201)
104 PF11712 Vma12: Endoplasmic re 42.9 30 0.00065 30.3 3.6 33 269-301 105-137 (142)
105 PF06570 DUF1129: Protein of u 42.5 1.6E+02 0.0034 27.2 8.4 14 224-237 117-130 (206)
106 PF02891 zf-MIZ: MIZ/SP-RING z 41.9 16 0.00034 26.9 1.4 35 120-157 11-50 (50)
107 KOG0978 E3 ubiquitin ligase in 40.7 14 0.00029 40.9 1.3 48 104-160 643-690 (698)
108 PF03839 Sec62: Translocation 40.7 41 0.00088 32.4 4.3 46 204-249 124-169 (224)
109 KOG0956 PHD finger protein AF1 40.5 15 0.00033 40.7 1.6 101 49-161 70-184 (900)
110 COG0765 HisM ABC-type amino ac 40.1 27 0.00059 33.3 3.1 74 222-300 31-112 (222)
111 KOG3268 Predicted E3 ubiquitin 39.9 26 0.00057 33.1 2.8 28 132-159 192-228 (234)
112 PF01146 Caveolin: Caveolin; 38.8 1.2E+02 0.0026 27.5 6.8 21 219-239 75-95 (148)
113 KOG1100 Predicted E3 ubiquitin 38.1 15 0.00032 34.7 0.9 41 105-159 159-200 (207)
114 PRK12652 putative monovalent c 37.6 64 0.0014 32.8 5.5 24 272-295 258-281 (357)
115 smart00249 PHD PHD zinc finger 37.0 9.9 0.00021 25.4 -0.3 29 106-141 1-31 (47)
116 PF14447 Prok-RING_4: Prokaryo 36.8 20 0.00043 27.6 1.3 45 104-160 7-51 (55)
117 KOG2927 Membrane component of 32.7 37 0.00081 34.9 2.8 28 209-236 208-235 (372)
118 KOG2034 Vacuolar sorting prote 31.7 21 0.00046 40.4 1.0 36 103-144 816-851 (911)
119 KOG0955 PHD finger protein BR1 30.3 15 0.00032 42.4 -0.5 53 102-159 217-271 (1051)
120 KOG1813 Predicted E3 ubiquitin 29.7 28 0.0006 35.0 1.3 46 105-160 242-287 (313)
121 PF12811 BaxI_1: Bax inhibitor 29.4 1.4E+02 0.003 29.6 6.1 19 282-300 248-266 (274)
122 KOG1814 Predicted E3 ubiquitin 29.1 36 0.00079 35.7 2.1 54 104-162 184-243 (445)
123 PF14012 DUF4229: Protein of u 27.4 54 0.0012 25.8 2.4 53 247-300 1-55 (69)
124 KOG2660 Locus-specific chromos 27.3 28 0.0006 35.4 0.9 49 104-161 15-63 (331)
125 TIGR02163 napH_ ferredoxin-typ 26.8 71 0.0015 30.5 3.5 38 211-248 27-64 (255)
126 PRK09477 napH quinol dehydroge 26.3 65 0.0014 31.0 3.2 27 224-250 47-73 (271)
127 KOG4443 Putative transcription 26.0 38 0.00082 37.4 1.7 49 242-291 147-200 (694)
128 PF13105 DUF3959: Protein of u 26.0 2.9E+02 0.0062 26.5 7.2 72 196-268 44-134 (239)
129 PF13894 zf-C2H2_4: C2H2-type 25.4 29 0.00063 20.0 0.4 12 150-161 2-13 (24)
130 PF03854 zf-P11: P-11 zinc fin 25.2 33 0.00071 25.9 0.7 27 131-159 20-46 (50)
131 KOG2735 Phosphatidylserine syn 25.1 83 0.0018 33.1 3.8 45 204-248 381-425 (466)
132 PF15013 CCSMST1: CCSMST1 fami 24.9 81 0.0018 25.7 3.0 19 189-207 31-50 (77)
133 KOG4583 Membrane-associated ER 24.9 92 0.002 32.1 4.0 10 248-257 265-274 (391)
134 PF07331 TctB: Tripartite tric 24.8 3.6E+02 0.0078 22.6 7.2 20 253-272 120-139 (141)
135 PF04138 GtrA: GtrA-like prote 24.8 2.9E+02 0.0062 22.2 6.4 39 255-297 75-113 (117)
136 KOG3972 Predicted membrane pro 23.8 1.2E+02 0.0025 29.5 4.2 90 193-288 29-118 (252)
137 KOG0827 Predicted E3 ubiquitin 23.5 11 0.00023 39.3 -2.8 50 104-160 196-246 (465)
138 PF10571 UPF0547: Uncharacteri 23.4 36 0.00079 22.1 0.6 12 148-159 14-25 (26)
139 PF11712 Vma12: Endoplasmic re 23.2 1.7E+02 0.0037 25.5 5.0 16 222-237 107-122 (142)
140 PF09607 BrkDBD: Brinker DNA-b 22.6 43 0.00092 26.0 0.9 13 134-146 37-49 (58)
141 PHA03096 p28-like protein; Pro 22.6 54 0.0012 32.5 1.9 47 105-156 179-231 (284)
142 TIGR00869 sec62 protein transl 22.3 1.1E+02 0.0023 29.8 3.8 43 207-249 135-177 (232)
143 COG2246 Predicted membrane pro 22.1 4.3E+02 0.0094 23.2 7.3 48 253-300 87-134 (139)
144 PF07907 YibE_F: YibE/F-like p 21.8 2.3E+02 0.0051 27.3 6.0 98 199-300 5-102 (244)
145 KOG4275 Predicted E3 ubiquitin 21.8 18 0.00039 36.5 -1.6 44 104-161 300-344 (350)
146 KOG1278 Endosomal membrane pro 21.5 2.6E+02 0.0057 30.8 6.8 97 194-300 404-545 (628)
147 KOG1729 FYVE finger containing 21.1 19 0.00041 35.8 -1.6 35 106-145 216-250 (288)
148 PF00628 PHD: PHD-finger; Int 20.7 32 0.0007 24.3 -0.1 45 106-156 1-50 (51)
149 PRK08965 putative monovalent c 20.5 1.2E+02 0.0027 27.1 3.6 23 272-294 92-114 (162)
150 KOG3059 N-acetylglucosaminyltr 20.5 3.2E+02 0.0069 27.5 6.7 47 201-247 150-197 (292)
151 PF11674 DUF3270: Protein of u 20.3 50 0.0011 27.6 1.0 22 269-290 62-83 (90)
152 PF02592 DUF165: Uncharacteriz 20.2 2.8E+02 0.0061 24.2 5.7 29 274-302 67-95 (145)
153 PF03616 Glt_symporter: Sodium 20.1 2.1E+02 0.0044 29.1 5.5 46 251-296 312-358 (368)
154 PHA02972 hypothetical protein; 20.1 2.3E+02 0.0051 24.1 4.9 42 255-300 48-89 (109)
No 1
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.74 E-value=1.2e-18 Score=164.33 Aligned_cols=204 Identities=28% Similarity=0.405 Sum_probs=139.0
Q ss_pred CCCCCCCCCCCeeeecccccccCC-CccccccccCCccccccHHHHHHHHHhcCCcccccccccccccceeeeeecccCC
Q 018762 95 DGGEDIPEEEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLLRLQNVQA 173 (350)
Q Consensus 95 ~~~e~i~eee~~CRICl~e~~e~~-e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~vp~~l~ri~~~~~ 173 (350)
++.++.++++..||||+++..+.. ..++.||.|+|+++++|+.|+++|+..|++..||+|++.+.+......+......
T Consensus 69 ~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~ 148 (323)
T KOG1609|consen 69 ESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISK 148 (323)
T ss_pred CccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhh
Confidence 344455666789999998764321 2789999999999999999999999999999999999999987543332221110
Q ss_pred CCCCCCccccc----ccceecccchhhHHHHHHHHHHHHhHhhcccccchhhhhh-hhHHHHHHHHHHHhhhhhhhhhhH
Q 018762 174 SSLPDSGAQVT----RYRVWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISL-PFSCILGLLASTTATTMVRKSFIW 248 (350)
Q Consensus 174 ~n~~~~~~~~~----~~r~Wq~~pvLViismL~yFcfLeqLlv~~~g~~Ai~is~-Pf~~iLGlL~s~~a~~~~~~~~iw 248 (350)
...+....... ....|..+.+.+.+..+..+++.+..+....+........ +..+.+|++...+.+.+....|+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 228 (323)
T KOG1609|consen 149 VRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIF 228 (323)
T ss_pred hhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHH
Confidence 00000000000 1112222223333455677777777766666664444444 556679999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc---hhhhhhhh-hhhccceEeeehhHHHHHH
Q 018762 249 LYAFIQFGLVVLSAHLFYSLLHM---QAVIVVLL-STFAGFGITMAGTSILTDA 298 (350)
Q Consensus 249 ~yA~~qf~lv~l~~~ify~~~~~---~~v~ai~l-a~~~Gfgi~~~~~~~~~~~ 298 (350)
.+..+.+.++.++..+|+....+ ..+....+ +...|++++.+...+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T KOG1609|consen 229 ILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTPLYIVS 282 (323)
T ss_pred HHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccceeeecc
Confidence 99999999999999988887776 33333322 2389999999888777775
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.63 E-value=2.5e-16 Score=140.55 Aligned_cols=58 Identities=28% Similarity=0.660 Sum_probs=50.5
Q ss_pred CCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 100 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 100 i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
..+.++.||||+++.+ ....||+|+|+++++|++||++|+..+++..||+|+++|...
T Consensus 4 ~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 4 VSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred cCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3456789999997632 356899999999999999999999999999999999999864
No 3
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.63 E-value=1.9e-16 Score=167.28 Aligned_cols=67 Identities=31% Similarity=0.716 Sum_probs=59.9
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccccceeeeeecccCCC
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLLRLQNVQAS 174 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~vp~~l~ri~~~~~~ 174 (350)
++.+.||||+.|. ..++++..||+|+|+.+|+|++||.+|+..+++++||+|+++|+. .++++++|+
T Consensus 10 ~d~~~CRICr~e~-~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F-----k~IY~e~mP 76 (1175)
T COG5183 10 EDKRSCRICRTED-IRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF-----KDIYKEDMP 76 (1175)
T ss_pred ccchhceeecCCC-CCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee-----eeecccCCC
Confidence 3458999999876 567899999999999999999999999999999999999999995 578888776
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.62 E-value=1.6e-16 Score=116.39 Aligned_cols=49 Identities=51% Similarity=1.146 Sum_probs=44.6
Q ss_pred eeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 018762 106 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 155 (350)
Q Consensus 106 ~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk 155 (350)
+||||+++ +++++++++||+|+|++++||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 35677899999999999999999999999999999999996
No 5
>PHA02862 5L protein; Provisional
Probab=99.55 E-value=2e-15 Score=133.12 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=47.1
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.+.||||+++.++ ...||+|+|+++++|++||++|++.+++..||+|+++|..
T Consensus 2 ~diCWIC~~~~~e----~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE----RNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC----CcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3589999987421 2599999999999999999999999999999999999985
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.55 E-value=1.5e-15 Score=110.38 Aligned_cols=47 Identities=38% Similarity=1.001 Sum_probs=37.5
Q ss_pred eeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 018762 107 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 154 (350)
Q Consensus 107 CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeIC 154 (350)
||||+++.+ .+++++.||+|+|++++||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~-~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEE-EDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-S-SSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCC-CCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899998863 34479999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=2.4e-12 Score=122.59 Aligned_cols=61 Identities=28% Similarity=0.624 Sum_probs=50.8
Q ss_pred CCCCCeeeecccccccCCC-ccccccccCCccccccHHHHHHHHHhcC------Cccccccccccccc
Q 018762 101 PEEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKG------NKTCEVCKQEVENL 161 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~e-~lilPC~CkGsl~~vH~~CL~kWl~~kg------~~~CeICk~~y~~v 161 (350)
.|.|+.||||+..+++... .++.||.|+|+.|+||+.||.+|+.+|. ...|+.|+++|..+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 3458899999987644332 4789999999999999999999998873 27999999999965
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-08 Score=101.01 Aligned_cols=50 Identities=24% Similarity=0.646 Sum_probs=44.9
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
..|.||+|++.+++...++||+ |.||..|++.||... .+.||+||+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 6999999999877777889999 999999999999875 5779999998775
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.64 E-value=1.2e-08 Score=71.96 Aligned_cols=44 Identities=34% Similarity=0.932 Sum_probs=36.5
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 155 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk 155 (350)
+.|.||++++.+++....++|+ |.||.+|+.+|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 3699999998666667788987 999999999999884 6999996
No 10
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.1e-06 Score=84.35 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=43.4
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
..+.+|.||++..-..+....+||+ |-||..|+++|+.. -+..||+|++++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhh-hcccCCccCCCCC
Confidence 3568999999887545567789999 99999999999984 2579999999865
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.04 E-value=3.3e-06 Score=66.35 Aligned_cols=44 Identities=30% Similarity=0.670 Sum_probs=32.4
Q ss_pred CeeeecccccccC-------C--C-ccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 018762 105 AVCRICFIELGEG-------F--D-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 155 (350)
Q Consensus 105 ~~CRICl~e~~e~-------~--e-~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk 155 (350)
+.|.||++++.+. + - ....+|+ |.||..||.+|++. +.+||+|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhc--CCcCCCCC
Confidence 3599999887321 1 1 2345788 99999999999976 45999997
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.93 E-value=7.9e-06 Score=75.74 Aligned_cols=51 Identities=27% Similarity=0.606 Sum_probs=41.6
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc--------------CCcccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------------GNKTCEVCKQEVEN 160 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k--------------g~~~CeICk~~y~~ 160 (350)
+++..|.||++.. .++.+.+|. |.++..|+.+|+..+ +...||+|+.++..
T Consensus 16 ~~~~~CpICld~~---~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQV---RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcC---CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3568999999765 357788998 999999999998632 34689999999875
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.90 E-value=8.1e-06 Score=77.79 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=40.3
Q ss_pred CCCeeeecccccccCCC-----ccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 103 EEAVCRICFIELGEGFD-----ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e-----~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
++..|.||+++..+.+. ....+|. |.||.+|+.+|+.. +.+||+|+..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 45799999987643221 2345787 99999999999975 56999999998865
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.4e-05 Score=80.49 Aligned_cols=55 Identities=25% Similarity=0.687 Sum_probs=43.2
Q ss_pred CCCCCCCCeeeecccccccCC----------CccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 98 EDIPEEEAVCRICFIELGEGF----------DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 98 e~i~eee~~CRICl~e~~e~~----------e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
|....++..|.||++|+-+.+ .+.++||. |.+|-+||+.|+.. ..+|||||.++.
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ER--qQTCPICr~p~i 345 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLER--QQTCPICRRPVI 345 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHh--ccCCCcccCccc
Confidence 444456789999998853322 35789999 99999999999986 569999999843
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.77 E-value=1.8e-05 Score=57.32 Aligned_cols=48 Identities=33% Similarity=0.791 Sum_probs=38.4
Q ss_pred CCCeeeecccccccCCCccccccccCCcccc-ccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~-vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
|+..|.||++.. .+....||+ |. +-.+|+.+|++ .+..||+|+.++..
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred CcCCCccCCccC---CceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 356899999763 357889999 88 99999999998 57899999999864
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.73 E-value=2.6e-05 Score=52.60 Aligned_cols=45 Identities=31% Similarity=0.815 Sum_probs=34.8
Q ss_pred eeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccc
Q 018762 106 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 158 (350)
Q Consensus 106 ~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y 158 (350)
.|.||++.. .......+|. |.+|.+|+++|++. ++..||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 488998775 2233445688 89999999999986 667899999763
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.63 E-value=4.5e-05 Score=62.49 Aligned_cols=53 Identities=30% Similarity=0.652 Sum_probs=37.3
Q ss_pred CCeeeeccccccc--------CCC-ccccccccCCccccccHHHHHHHHHhc-CCcccccccccccc
Q 018762 104 EAVCRICFIELGE--------GFD-ALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e--------~~e-~lilPC~CkGsl~~vH~~CL~kWl~~k-g~~~CeICk~~y~~ 160 (350)
++.|-||...++. +++ ++. -+.|. |.||..||.+|++.. .+..||.|+++++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4578888876631 111 222 13443 999999999999874 46899999999874
No 18
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.44 E-value=4.3e-05 Score=59.80 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=24.6
Q ss_pred CCeeeecccccccCCCcccccc---ccCCccccccHHHHHHHHHhcC-C--------ccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMEC---GCKGELAFAHRECAVKWFSIKG-N--------KTCEVCKQEVE 159 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC---~CkGsl~~vH~~CL~kWl~~kg-~--------~~CeICk~~y~ 159 (350)
+..|.||+....++++....-| +|+ +.+|..||.+||.... + -.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4589999976532333323334 565 6899999999997531 1 36999999876
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7.2e-05 Score=78.17 Aligned_cols=49 Identities=31% Similarity=0.857 Sum_probs=41.4
Q ss_pred CCCeeeecccccccCCC--ccccccccCCccccccHHHHHHHHHhcCCcccccccccc
Q 018762 103 EEAVCRICFIELGEGFD--ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 158 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e--~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y 158 (350)
....|.||.+++..+.+ +.++||. |.+|..|+++|++. ..+||+|+.++
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 46899999988754433 6789999 99999999999987 57999999943
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.43 E-value=0.00011 Score=47.72 Aligned_cols=39 Identities=41% Similarity=0.962 Sum_probs=32.0
Q ss_pred eeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 018762 107 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 154 (350)
Q Consensus 107 CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeIC 154 (350)
|.||++. ..+...+||. |.+|..|+++|++ .+...||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 6789866 2457788998 8999999999998 466789987
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=97.29 E-value=0.00019 Score=68.20 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=42.0
Q ss_pred CCCCeeeecccccccC----C--CccccccccCCccccccHHHHHHHHHhc----CCccccccccccccc
Q 018762 102 EEEAVCRICFIELGEG----F--DALKMECGCKGELAFAHRECAVKWFSIK----GNKTCEVCKQEVENL 161 (350)
Q Consensus 102 eee~~CRICl~e~~e~----~--e~lilPC~CkGsl~~vH~~CL~kWl~~k----g~~~CeICk~~y~~v 161 (350)
.++.+|-||++..-+. + -.+..+|+ |.|...|+.+|.+.+ ..+.||+|+..+..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4578999999764221 1 13456898 999999999999864 246799999999875
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.22 E-value=0.00027 Score=48.68 Aligned_cols=41 Identities=29% Similarity=0.794 Sum_probs=34.1
Q ss_pred eeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccc
Q 018762 107 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 154 (350)
Q Consensus 107 CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeIC 154 (350)
|.||++... +.....+|. |.|+++|+.+|++.++...||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 789987752 223479999 99999999999998788999998
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00017 Score=58.35 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=38.2
Q ss_pred eeeeccccccc--------CCC-ccccc-cccCCccccccHHHHHHHHHhcCC-cccccccccccc
Q 018762 106 VCRICFIELGE--------GFD-ALKME-CGCKGELAFAHRECAVKWFSIKGN-KTCEVCKQEVEN 160 (350)
Q Consensus 106 ~CRICl~e~~e--------~~e-~lilP-C~CkGsl~~vH~~CL~kWl~~kg~-~~CeICk~~y~~ 160 (350)
.|-||.+.++. +++ +++.. |+ |.||..|+.+|+..+.+ ..||.|+++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~-----h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCL-----HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHH-----HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 88899877631 122 55544 55 99999999999988754 799999999874
No 24
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.07 E-value=0.00021 Score=78.78 Aligned_cols=55 Identities=27% Similarity=0.611 Sum_probs=39.3
Q ss_pred CCCeeeecccccc--cCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+..+|.||+.-.. +..-+-..---|| +.+|-.||-|||+.+++.+||+|+.++..
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4578999986543 1111222111244 78999999999999999999999988753
No 25
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00082 Score=63.94 Aligned_cols=53 Identities=30% Similarity=0.541 Sum_probs=44.7
Q ss_pred CCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCC-ccccccccccccc
Q 018762 101 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCKQEVENL 161 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~-~~CeICk~~y~~v 161 (350)
+.....|-||++.- .+++++.|. |+|==.||-+|+..+.+ +.||+||.++..-
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 44678999999663 568999999 99999999999988754 6779999999863
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00046 Score=71.76 Aligned_cols=58 Identities=22% Similarity=0.539 Sum_probs=42.2
Q ss_pred CCCCCCCCCCeeeeccccccc---C-----------CCccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 96 GGEDIPEEEAVCRICFIELGE---G-----------FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 96 ~~e~i~eee~~CRICl~e~~e---~-----------~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
++|...+....|.||+.+.+- + .+-+..||. |.+|+.||++|... .+..||+|+....
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 344445567899999876521 1 123456999 99999999999985 2468999998754
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.85 E-value=0.00073 Score=46.58 Aligned_cols=38 Identities=39% Similarity=0.836 Sum_probs=30.4
Q ss_pred eeecccccccCCCc-cccccccCCccccccHHHHHHHHHhcCCcccccc
Q 018762 107 CRICFIELGEGFDA-LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 154 (350)
Q Consensus 107 CRICl~e~~e~~e~-lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeIC 154 (350)
|.||++.. .++ ..++|+ |.+.++|+.+|++. +..||+|
T Consensus 1 C~iC~~~~---~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB----SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcc---cCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 78998765 235 579999 99999999999987 4799998
No 28
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.002 Score=63.13 Aligned_cols=53 Identities=25% Similarity=0.676 Sum_probs=45.5
Q ss_pred CCCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 98 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 98 e~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.++++....|-+|++.. .++--+||. |.|=-.|+..|..+|. .||+|+.+++.
T Consensus 233 ~~i~~a~~kC~LCLe~~---~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENR---SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCC---CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 36688889999999764 467889999 9999999999999864 59999999884
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.69 E-value=0.0017 Score=47.99 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=37.5
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
..|.||.+-+. ++...||. |.+-++|+.+|++. +.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC---CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 47999987753 47888886 89999999999987 568999998874
No 30
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=96.64 E-value=0.0013 Score=54.26 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHH
Q 018762 247 IWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDAL 299 (350)
Q Consensus 247 iw~yA~~qf~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~ 299 (350)
+|+++ ++ +++||+.+++..+|.+|++||.+-|+|++|++.+=+++.+
T Consensus 16 ~wv~~---lG---~wfHIvarLV~~~P~mA~~LAeiia~~Lvl~GgYrILda~ 62 (93)
T PF09679_consen 16 MWVFS---LG---FWFHIVARLVYRQPEMAFFLAEIIAVGLVLSGGYRILDAW 62 (93)
T ss_pred chhhH---HH---HHHHHHHHHHHhChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 57766 43 7999999999999999999999999999999999988877
No 31
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.48 E-value=0.002 Score=45.67 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=36.8
Q ss_pred eeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccc
Q 018762 106 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 156 (350)
Q Consensus 106 ~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~ 156 (350)
.|-||++.+.+.....+++|. |.+..+|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 388999888444557889999 999999999999 55789999985
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0055 Score=61.52 Aligned_cols=52 Identities=27% Similarity=0.554 Sum_probs=39.5
Q ss_pred CCCCCCeeeecccccccCCCccccccccCCcccc-ccHHHHHHHHHhcCCccccccccccccc
Q 018762 100 IPEEEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 100 i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~-vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
..|++++|-||+.+. .+.+++||+ |. .=.+|++.-.-. .+.||||++.+..+
T Consensus 286 ~~~~gkeCVIClse~---rdt~vLPCR-----HLCLCs~Ca~~Lr~q--~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 286 ESESGKECVICLSES---RDTVVLPCR-----HLCLCSGCAKSLRYQ--TNNCPICRQPIEEL 338 (349)
T ss_pred cccCCCeeEEEecCC---cceEEecch-----hhehhHhHHHHHHHh--hcCCCccccchHhh
Confidence 446789999999763 467889988 43 667898886532 47899999999853
No 33
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0039 Score=63.50 Aligned_cols=46 Identities=30% Similarity=0.728 Sum_probs=34.4
Q ss_pred CCeeeecccccccCCCcc--ccccccCCccccccHHHHHHHHHhcCC-ccccccc
Q 018762 104 EAVCRICFIELGEGFDAL--KMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCK 155 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~l--ilPC~CkGsl~~vH~~CL~kWl~~kg~-~~CeICk 155 (350)
.+.|.|| +++...++.+ +.-|. |.||..||.+||..--+ +.||+|+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEe-ccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 4689999 4443333322 45588 99999999999987654 6999999
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.86 E-value=0.0051 Score=62.81 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.1
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+...|.||++.+ .++...||. |.|...|+..|+..+ ..||+|+..+..
T Consensus 25 ~~l~C~IC~d~~---~~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFF---DVPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhh---hCccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 467999999765 346789999 999999999999763 489999998764
No 35
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.017 Score=53.45 Aligned_cols=60 Identities=17% Similarity=0.400 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 92 KKDDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 92 ~~~~~~e~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
...|..+..+++..-|-||++.+. +..+.-.-|. |.|=.+|++.-++. ..+||+|+.++.
T Consensus 119 ~~k~v~~~~~~~~~~CPiCl~~~s-ek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 119 RDKDVDPLRKEGTYKCPICLDSVS-EKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred ccccccccccccccCCCceecchh-hccccccccc-----hhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 344555555667799999998863 2334457788 99999999999976 689999998655
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.45 E-value=0.0063 Score=62.85 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=38.8
Q ss_pred CCCCCeeeecccccccCC-CccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 101 PEEEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~-e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
..|-..|.+|++.+.++- ..+-.+|. |-||-.|+.+|-. .+||+|++--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhccc----CcChhhhhhcC
Confidence 346789999998874432 24556788 9999999999964 58999998766
No 37
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.33 E-value=0.013 Score=48.09 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=26.9
Q ss_pred cccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 123 MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 123 lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
--|+ |.||-.|+.+||++| ..||+|+++++.
T Consensus 52 G~Cn-----HaFH~HCI~rWL~Tk--~~CPld~q~w~~ 82 (88)
T COG5194 52 GVCN-----HAFHDHCIYRWLDTK--GVCPLDRQTWVL 82 (88)
T ss_pred Eecc-----hHHHHHHHHHHHhhC--CCCCCCCceeEE
Confidence 4477 999999999999985 599999999874
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0047 Score=60.44 Aligned_cols=52 Identities=25% Similarity=0.644 Sum_probs=40.2
Q ss_pred CCeeeeccccccc--C-----CCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGE--G-----FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e--~-----~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+.+|.+|-..... + ++...+-|+ |.+|+.|++-|...-.+.+||-||.++.-
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4689999644321 1 245578899 99999999999987667899999999773
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.08 E-value=0.022 Score=62.44 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=37.8
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 162 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~vp 162 (350)
....|.+|+....++...-..+|. |+||..|+..|-+. -.+|++|+.+|..+-
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~-----H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTA-----HYFCEECVGSWSRC--AQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccc-----cccHHHHhhhhhhh--cccCchhhhhhheee
Confidence 345666666544222222345677 79999999999876 579999999998764
No 40
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.29 E-value=0.029 Score=39.79 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=29.7
Q ss_pred eeecccccccCCCccccccccCCccccccHHHHHHHHHhcCC--cccccc
Q 018762 107 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN--KTCEVC 154 (350)
Q Consensus 107 CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~--~~CeIC 154 (350)
|.||++-+ .++..++|. |.|=+.||.+|.+..+. ..||+|
T Consensus 1 CpiC~~~~---~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 78998765 468889999 99999999999987654 489988
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.043 Score=56.42 Aligned_cols=53 Identities=21% Similarity=0.597 Sum_probs=42.0
Q ss_pred CCCeeeecccccccCCC-cc-ccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELGEGFD-AL-KMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e-~l-ilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.+..|.||+++....++ .+ .+-|. |.|-.+|+++|+-.+....||.|+.+...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 35789999998865554 33 45587 99999999999976667899999988654
No 42
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.40 E-value=0.068 Score=39.68 Aligned_cols=46 Identities=24% Similarity=0.560 Sum_probs=22.5
Q ss_pred eeecccccccCCCccccccccCCccccccHHHHHHHHHhc--CCccccccccccc
Q 018762 107 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--GNKTCEVCKQEVE 159 (350)
Q Consensus 107 CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k--g~~~CeICk~~y~ 159 (350)
|.+|.+++ +..+.-..||.|. ++-|..=|...+ ++..||-||.+|+
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc-ccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67888877 3444567999984 566777777665 4789999999984
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.053 Score=46.44 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=26.5
Q ss_pred cccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 123 MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 123 lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
..|+ |.||.-|+.+|++. +..||+|..+...
T Consensus 79 G~CN-----HaFH~hCisrWlkt--r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 79 GVCN-----HAFHFHCISRWLKT--RNVCPLDNKEWVF 109 (114)
T ss_pred eecc-----hHHHHHHHHHHHhh--cCcCCCcCcceeE
Confidence 3477 99999999999998 5799999998663
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.13 E-value=0.058 Score=42.15 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=36.6
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
++..|-||.+-+ .++.+.||. +.+=+.|+++|+.. +..+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM---~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELM---RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB----SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHh---hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 467899998665 358889987 89999999999987 57899999887764
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=93.13 E-value=0.064 Score=38.61 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=22.9
Q ss_pred eeecccccccCC-CccccccccCCccccccHHHHHHHHHhc--CCcccc
Q 018762 107 CRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIK--GNKTCE 152 (350)
Q Consensus 107 CRICl~e~~e~~-e~lilPC~CkGsl~~vH~~CL~kWl~~k--g~~~Ce 152 (350)
|-||.+ +.+++ .+..+||. |.+=++||+++.+.+ +..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 778987 53333 36889999 999999999999875 456665
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.81 E-value=0.042 Score=56.52 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=42.2
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
..|.||-+.. .+.-+-||. |+.-..||-.|-...+...||.|+.+++..
T Consensus 370 eLCKICaend---KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccC---CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 5799997653 457789999 999999999999887789999999999864
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.65 E-value=0.038 Score=54.97 Aligned_cols=52 Identities=17% Similarity=0.521 Sum_probs=39.9
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc---------------------CCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK---------------------GNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k---------------------g~~~CeICk~~y~~ 160 (350)
.-.|-||+-.+.+++...+.+|. ||+|-.||.+.|..- -...|++|+..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35799998777555556789998 999999998877531 13679999998875
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.092 Score=46.67 Aligned_cols=46 Identities=30% Similarity=0.705 Sum_probs=39.0
Q ss_pred CCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccc
Q 018762 101 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 156 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~ 156 (350)
.+++..|.||++.+.+ +.++||. |.+=+.|+..+.. ....||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~---p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE---PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc---Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 3467899999988743 3789999 9999999999998 6789999994
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.94 E-value=0.094 Score=53.88 Aligned_cols=52 Identities=21% Similarity=0.528 Sum_probs=42.5
Q ss_pred CCCeeeecccccccCCCcc-ccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDAL-KMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~l-ilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
-+-.|-.|-+.++...+.+ -+||+ |.+|..|+...+..++..+||-|++-..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4578999987776555544 68999 9999999999999999999999994433
No 50
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.02 E-value=0.16 Score=45.15 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCCeeeecccccccCCCccccccccCCcc-ccccHHHHHHHHHh
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGEL-AFAHRECAVKWFSI 145 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl-~~vH~~CL~kWl~~ 145 (350)
-..+|+||++...+.+..+..+|.-.=.+ +.+|.+|+++|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 36799999988765344566676643332 56999999999543
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.25 Score=49.89 Aligned_cols=55 Identities=22% Similarity=0.472 Sum_probs=41.6
Q ss_pred CCCCeeeecccccccCC--C--ccccc-cccCCccccccHHHHHHHHHhcC-----Cccccccccccccc
Q 018762 102 EEEAVCRICFIELGEGF--D--ALKME-CGCKGELAFAHRECAVKWFSIKG-----NKTCEVCKQEVENL 161 (350)
Q Consensus 102 eee~~CRICl~e~~e~~--e--~lilP-C~CkGsl~~vH~~CL~kWl~~kg-----~~~CeICk~~y~~v 161 (350)
..+..|-||++...+.- + .-++| |+ |.+=..|+.+|-..+. ++.||+|+..-..+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45789999997764321 0 12344 88 8999999999997665 69999999988865
No 52
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.65 E-value=0.4 Score=47.85 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=38.4
Q ss_pred CCeeeecccccccCC--CccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGF--DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~--e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+..|.+|..+.-... ..++.+|. |-+=..|+.+.+.. +...||.|+..++.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 458999987532222 24566898 99999999997754 67799999988775
No 53
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=0.43 Score=46.67 Aligned_cols=53 Identities=23% Similarity=0.452 Sum_probs=43.3
Q ss_pred CCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHH-HHHhcCCcccccccccccc
Q 018762 99 DIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVK-WFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 99 ~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~k-Wl~~kg~~~CeICk~~y~~ 160 (350)
.+++....|-||++.. ..+...||. |.|=-.||.. |-+. ..-.||+|+.....
T Consensus 210 fip~~d~kC~lC~e~~---~~ps~t~Cg-----HlFC~~Cl~~~~t~~-k~~~CplCRak~~p 263 (271)
T COG5574 210 FIPLADYKCFLCLEEP---EVPSCTPCG-----HLFCLSCLLISWTKK-KYEFCPLCRAKVYP 263 (271)
T ss_pred cccccccceeeeeccc---CCccccccc-----chhhHHHHHHHHHhh-ccccCchhhhhccc
Confidence 4567788999998764 467889999 9999999999 8775 35679999998664
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.46 E-value=0.44 Score=55.90 Aligned_cols=55 Identities=24% Similarity=0.700 Sum_probs=41.0
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc--------CCccccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------GNKTCEVCKQEVENL 161 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k--------g~~~CeICk~~y~~v 161 (350)
+.++.|-||+.|--.....+.+.|+ |.||-.|..+=+..+ +-..||||+.++..+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3568999999764222334567788 999999998777654 347999999998753
No 55
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.96 E-value=0.51 Score=52.50 Aligned_cols=59 Identities=22% Similarity=0.465 Sum_probs=43.4
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc-----CCcccccccccccccceee
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-----GNKTCEVCKQEVENLPVTL 165 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k-----g~~~CeICk~~y~~vp~~l 165 (350)
+.-+|-||.+........+ +|+.=-|.||..|+.+|-..+ ..+.||-|++.++.+|.+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y 253 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTY 253 (950)
T ss_pred CceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCccc
Confidence 3478999998874433333 333334999999999998654 3599999999999887643
No 56
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=84.82 E-value=1 Score=36.81 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=24.6
Q ss_pred CCCeeeecccccc--cCCCccc--cccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~li--lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
...+|.||-++.+ +.+++++ +.|. --+=+.|.+-=.+. |+..|+.||+.|+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 4679999977654 3456553 4565 45888999877765 899999999999853
No 57
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.43 E-value=1 Score=41.20 Aligned_cols=53 Identities=26% Similarity=0.733 Sum_probs=37.0
Q ss_pred CCCeeeecccccccCCCccccccc----------cCCccccccHHHHHHHHHhcC-------------------------
Q 018762 103 EEAVCRICFIELGEGFDALKMECG----------CKGELAFAHRECAVKWFSIKG------------------------- 147 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~----------CkGsl~~vH~~CL~kWl~~kg------------------------- 147 (350)
|+..|-||++- ..+.+.+-|+ |.. .+-|..||++.-+..+
T Consensus 1 ed~~CpICme~---PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T PF07800_consen 1 EDVTCPICMEH---PHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSES 75 (162)
T ss_pred CCccCceeccC---CCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccc
Confidence 46789999865 2344444443 443 5789999999886532
Q ss_pred ----Ccccccccccccc
Q 018762 148 ----NKTCEVCKQEVEN 160 (350)
Q Consensus 148 ----~~~CeICk~~y~~ 160 (350)
...||+|+-++..
T Consensus 76 ~~~~~L~CPLCRG~V~G 92 (162)
T PF07800_consen 76 QEQPELACPLCRGEVKG 92 (162)
T ss_pred cccccccCccccCceec
Confidence 2579999999875
No 58
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.06 E-value=0.35 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=24.9
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHH
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVK 141 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~k 141 (350)
++..|.+|...... +.-...||+ +.+|..|+.+
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEecccccC
Confidence 45679999988743 344568887 8999999864
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=83.53 E-value=0.54 Score=46.97 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=40.0
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
...|+||.+-.. -+.+.+|. |-|-.-|+.+-|.+ .-.||+|+.++...
T Consensus 25 ~lrC~IC~~~i~---ip~~TtCg-----HtFCslCIR~hL~~--qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRIS---IPCETTCG-----HTFCSLCIRRHLGT--QPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheee---cceecccc-----cchhHHHHHHHhcC--CCCCccccccHHhh
Confidence 578999987652 36789999 89999999999987 46899999998763
No 60
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=83.28 E-value=1.3 Score=44.95 Aligned_cols=38 Identities=29% Similarity=0.705 Sum_probs=29.6
Q ss_pred ccccccCCccccccHHHHHHHHHhc-----------CCcccccccccccccc
Q 018762 122 KMECGCKGELAFAHRECAVKWFSIK-----------GNKTCEVCKQEVENLP 162 (350)
Q Consensus 122 ilPC~CkGsl~~vH~~CL~kWl~~k-----------g~~~CeICk~~y~~vp 162 (350)
-.+|.|+ -.-=.+|+-|||..+ |+-.||.|+..|-.+.
T Consensus 306 C~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 306 CQQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred Ccccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3468887 355679999999876 4579999999998654
No 61
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.79 Score=48.43 Aligned_cols=49 Identities=18% Similarity=0.616 Sum_probs=39.4
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc---CCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK---GNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k---g~~~CeICk~~y~~ 160 (350)
+..|.||+++. .-+..+-|. |.|=-.||.+.+... +-..||+|+..+..
T Consensus 186 ~~~CPICL~~~---~~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCC---CcccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999764 235566688 999999999988653 56899999999875
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.11 E-value=2.2 Score=43.74 Aligned_cols=52 Identities=29% Similarity=0.577 Sum_probs=38.3
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
||+..|-||-.... -.-..||. |-.-..|..+-..--..+.|++|+++...+
T Consensus 59 Een~~C~ICA~~~T---Ys~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 59 EENMNCQICAGSTT---YSARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccceeEEecCCce---EEEeccCC-----chHHHHHHHHHHHHHhccCCCccccccceE
Confidence 45679999976542 23478998 666677887765544568999999998875
No 63
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=80.97 E-value=0.77 Score=32.91 Aligned_cols=22 Identities=32% Similarity=0.759 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHhcCCcccccc
Q 018762 133 FAHRECAVKWFSIKGNKTCEVC 154 (350)
Q Consensus 133 ~vH~~CL~kWl~~kg~~~CeIC 154 (350)
-+|..|+.++++.+.+..||.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999999877799987
No 64
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.44 E-value=0.73 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=20.6
Q ss_pred CCCeeeecccccccCCCcccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGC 127 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~C 127 (350)
+.-+|-||+++++.++..-++||-|
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEE
Confidence 3468999999996666677999998
No 65
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=80.15 E-value=0.7 Score=46.99 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=39.7
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
--.|-||++-+ .-+++.||+ |-|-.-|+.+.|+. ...||.|..+++-
T Consensus 23 lLRC~IC~eyf---~ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHh---cCceecccc-----chHHHHHHHHHhcc--CCCCCceecccch
Confidence 46899999655 247899999 89999999999987 5799999999874
No 66
>PLN02189 cellulose synthase
Probab=80.14 E-value=1.2 Score=50.75 Aligned_cols=53 Identities=28% Similarity=0.566 Sum_probs=37.1
Q ss_pred CCCeeeecccccc--cCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~lilPC~-CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
...+|+||-++.+ +.++++ -.|+ |. --+=+.|.+- =...|+..||.||+.|+-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cyey-er~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCYEY-ERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCC---Cccccchhhh-hhhcCCccCcccCCchhh
Confidence 3569999988765 344544 4555 42 2377899954 344589999999999993
No 67
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.25 E-value=2 Score=45.31 Aligned_cols=53 Identities=26% Similarity=0.725 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 94 DDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 94 ~~~~e~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+.+.|++.+.+..|+||..+. ..-+.+|. |..|+.+|+..+ ..||+|+.....
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~~--~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 469 EATPSQLREPNDVCAICYQEM----SARITPCS--------HALCLRKWLYVQ--EVCPLCHTYMKE 521 (543)
T ss_pred CCChhhhhcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhhc--cccCCCchhhhc
Confidence 345567777889999998775 22345554 999999999874 589999888764
No 68
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=78.70 E-value=0.91 Score=44.38 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=20.9
Q ss_pred ccCCccccccHHHHHHHHHhcCCccccccccc
Q 018762 126 GCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 157 (350)
Q Consensus 126 ~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~ 157 (350)
+|+- -|||.+|+--==--||++.|+-||..
T Consensus 241 nCkr--EWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKR--EWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCch--hheeccccccCCCCCCcEeCHHhHhc
Confidence 4543 58999997532223789999999864
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=77.72 E-value=1.3 Score=47.36 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=40.4
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHh---cCCccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVE 159 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~---kg~~~CeICk~~y~ 159 (350)
.++.+|.+|++.- ++.+..-|. |.|-+.|+..++.. ..+.+||.|.....
T Consensus 534 k~~~~C~lc~d~a---ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPA---EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChh---hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3578999999763 457888898 89999999998754 45699999987765
No 70
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=1.5 Score=33.88 Aligned_cols=49 Identities=18% Similarity=0.577 Sum_probs=32.2
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
++|.||++.. -+...--|.= -..-++|-.+-.+. +.-.||||+.+++.+
T Consensus 8 dECTICye~p---vdsVlYtCGH----MCmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHP---VDSVLYTCGH----MCMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCc---chHHHHHcch----HHhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 6899999663 2233344541 12456887665553 567999999998865
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.20 E-value=1.8 Score=42.03 Aligned_cols=50 Identities=24% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc------CCccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------GNKTCEVCKQEVE 159 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k------g~~~CeICk~~y~ 159 (350)
..-|+.|-..+ ++++..++-|- |.+|-+|+..|-..= .-..||-|..++-
T Consensus 50 ~pNC~LC~t~L-a~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPL-ASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCcc-ccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 45799998877 45677888898 999999999998642 1278999999864
No 72
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=76.58 E-value=1.7 Score=41.38 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 95 DGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 95 ~~~e~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+.+|+|| ..|-||-.++. .++...|. |+|-..|+.+=.+. ...|-+|+.....
T Consensus 190 ~~~e~IP---F~C~iCKkdy~---spvvt~CG-----H~FC~~Cai~~y~k--g~~C~~Cgk~t~G 242 (259)
T COG5152 190 GPGEKIP---FLCGICKKDYE---SPVVTECG-----HSFCSLCAIRKYQK--GDECGVCGKATYG 242 (259)
T ss_pred CCCCCCc---eeehhchhhcc---chhhhhcc-----hhHHHHHHHHHhcc--CCcceecchhhcc
Confidence 4455555 79999988763 47889999 99999999886653 5799999988654
No 73
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=76.21 E-value=2.1 Score=49.00 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=36.2
Q ss_pred CCCeeeecccccc--cCCCccc--cccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~li--lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
.+.+|+||-++.+ .++++++ ..|. --|=+.|.+-=.+ -|+..||.||+.|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYEYEr~-eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYEYERK-DGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhhhhhh-cCCccCCccCCchh
Confidence 4569999987754 3456553 4564 2367789854444 48999999999999
No 74
>PLN02436 cellulose synthase A
Probab=75.12 E-value=2 Score=49.14 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=36.5
Q ss_pred CCCeeeecccccc--cCCCccccccc-cCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~lilPC~-CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
...+|.||-++.+ .+++++ --|+ |. --+=+.|.+. -...|+..||.||+.|+-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cyey-er~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCYEY-ERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEE-EeeccCC---Cccccchhhh-hhhcCCccCcccCCchhh
Confidence 3569999987764 345555 3344 31 2377899954 444589999999999993
No 75
>PLN02195 cellulose synthase A
Probab=75.03 E-value=2.6 Score=47.89 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=35.9
Q ss_pred CCCeeeecccccc--cCCCccc--cccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~li--lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
...+|+||-++.+ ..+++++ ..|. --|=+.|.+-=.+ -|+..||.||+.|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCyeyer~-eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLEYEIK-EGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC-----Cccccchhhhhhh-cCCccCCccCCccc
Confidence 4679999987654 3455553 4554 2377789854344 48999999999999
No 76
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=2.2 Score=42.68 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=35.4
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.++|.||+... --+..++|. |.|-+.|++-=... +...|.+|+.++..
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~-----HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCF-----HKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccC---CcCcccccc-----chhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 46899999663 235778888 77778887654433 45789999999874
No 77
>PLN02400 cellulose synthase
Probab=71.50 E-value=2.2 Score=48.81 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=36.3
Q ss_pred CCCeeeecccccc--cCCCccc--cccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~li--lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.+.+|.||-++.+ +++++++ ..|. --|=+.|.+-=.+ -|+..||.||+.|+-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYEYERk-eGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYEYERK-DGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhheecc-cCCccCcccCCcccc
Confidence 4579999987764 3456553 4564 2366788854333 389999999999993
No 78
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=70.40 E-value=4 Score=46.68 Aligned_cols=52 Identities=27% Similarity=0.521 Sum_probs=36.4
Q ss_pred CCCeeeecccccc--cCCCccc--cccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~--e~~e~li--lPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
...+|.||-++.+ .++++++ ..|. --+-+.|.+-=.+ .|+..||.||+.|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cyeye~~-~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYEYERS-EGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhhhhhh-cCCccCCccCCchhh
Confidence 4679999987654 3455553 4564 2367789854333 489999999999993
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=68.78 E-value=4.7 Score=41.24 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=35.9
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc--CCccccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--GNKTCEVCKQEVENL 161 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k--g~~~CeICk~~y~~v 161 (350)
|++.|..|.+++.-. +.-.-||.|. | +-|---|-..+ -+-.||-|+..|...
T Consensus 13 eed~cplcie~mdit-dknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDIT-DKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccc-cCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 556799999887433 3445789884 2 44555565544 457999999999854
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.72 E-value=4.1 Score=36.50 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.1
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
--+|-||.+.. .++.+..|=.|-|. +.---=|+.-|--.+-.-.||+||+.|+..
T Consensus 80 lYeCnIC~etS--~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETS--AEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCccccc--chhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 57899998774 34566677555553 333444578888777779999999999853
No 81
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.55 E-value=3 Score=46.61 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=35.2
Q ss_pred CCCCCCCCeeeecccccccCCCcccc--ccccCCccccccHHHHHHHHHhc--CCccccccc
Q 018762 98 EDIPEEEAVCRICFIELGEGFDALKM--ECGCKGELAFAHRECAVKWFSIK--GNKTCEVCK 155 (350)
Q Consensus 98 e~i~eee~~CRICl~e~~e~~e~lil--PC~CkGsl~~vH~~CL~kWl~~k--g~~~CeICk 155 (350)
++..+|+..|-||... +.++.|++ .|+ ..|+|-+||+-=+.+. +.++|+-|-
T Consensus 209 ~~~~~E~~~C~IC~~~--DpEdVLLLCDsCN----~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 209 SGLSQEEVKCDICTVH--DPEDVLLLCDSCN----KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cCcccccccceeeccC--ChHHhheeecccc----cceeeccccCcccccccccceecCcch
Confidence 3445677899999765 34444433 344 3679999999866332 568999995
No 82
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.96 E-value=5.6 Score=40.95 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=39.3
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.|+..|-||.... -+.+..||+ |---+.|+.+-+.. ++.|-.||.....
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~-----H~SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCS-----HRSCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccCCC-----CchHHHHHHHHHhc--CCeeeEecceeee
Confidence 4678999998652 356789999 66677899888764 6899999999885
No 83
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=58.92 E-value=8.5 Score=29.40 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=32.1
Q ss_pred CCCeeeecccccccCCCccccc-cccCCccccccHHHHHHHHHhcCCccccc--ccccc
Q 018762 103 EEAVCRICFIELGEGFDALKME-CGCKGELAFAHRECAVKWFSIKGNKTCEV--CKQEV 158 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilP-C~CkGsl~~vH~~CL~kWl~~kg~~~CeI--Ck~~y 158 (350)
++..|-+|-+.+.++++.++-| |+ +-.|++|.++ ...|-+ |+..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cg-----apyHR~C~~~------~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECG-----APYHRDCWEK------AGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCC-----CcccHHHHhh------CCceEeccCCCCc
Confidence 4678999998886566766655 87 8899999654 245655 66554
No 84
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.90 E-value=31 Score=34.15 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=39.9
Q ss_pred CCCCeeeecccccccCCC-ccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e-~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
++..+|.+|.+.+..... ....||. +.|-.+|+++.+.. ...|++|..+...
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg-----~Vv~~ecvEklir~--D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSG-----HVVTKECVEKLIRK--DMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCC-----cEeeHHHHHHhccc--cccccCCCCcCcc
Confidence 366899999988742211 2356777 89999999998864 7899999999875
No 85
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.23 E-value=7.2 Score=38.51 Aligned_cols=44 Identities=32% Similarity=0.612 Sum_probs=33.5
Q ss_pred eeeecccccccC-CCccccccccCCccccccHHHHHHHHHhcCCcccccccc
Q 018762 106 VCRICFIELGEG-FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 156 (350)
Q Consensus 106 ~CRICl~e~~e~-~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~ 156 (350)
.|-||.+..... ..+-.++|+ |+.|..|++.-... + ..||+|+.
T Consensus 160 ncPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcc-----cchHHHHHHHHhcc-C-CCCCcccc
Confidence 377777665433 235578999 99999998887765 3 99999999
No 86
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=51.69 E-value=7.2 Score=37.96 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=34.5
Q ss_pred CCCCCeeeecccccccCCCccccccccCCcc-ccccHHHHHHHHHhcCCccccccccccc
Q 018762 101 PEEEAVCRICFIELGEGFDALKMECGCKGEL-AFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~e~lilPC~CkGsl-~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
++|...|. |.... .+ .+ -.|.|.+=- .|||..|+--=..-+|++.|+-|+..-.
T Consensus 216 ~~e~~yC~-Cnqvs--yg-~M-i~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 216 PDEPTYCI-CNQVS--YG-KM-IGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCCCEEEE-ecccc--cc-cc-cccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 44556665 54221 11 22 247665544 8999999865455578999999998754
No 87
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.40 E-value=9.1 Score=38.52 Aligned_cols=36 Identities=25% Similarity=0.616 Sum_probs=28.1
Q ss_pred cccCCccccccHHHHHHHHHhc-----------CCcccccccccccccce
Q 018762 125 CGCKGELAFAHRECAVKWFSIK-----------GNKTCEVCKQEVENLPV 163 (350)
Q Consensus 125 C~CkGsl~~vH~~CL~kWl~~k-----------g~~~CeICk~~y~~vp~ 163 (350)
|-|+ -.--++||.+||..+ |+-+||.|+..|-...+
T Consensus 323 c~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 323 CICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5565 466789999999654 56899999999986543
No 88
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=51.36 E-value=7.4 Score=29.50 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=28.5
Q ss_pred CCeeeecccccccCCCcccc-ccccCCccccccHHHHHHHHHhcCCccccc
Q 018762 104 EAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEV 153 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lil-PC~CkGsl~~vH~~CL~kWl~~kg~~~CeI 153 (350)
...|.|....+ .++.+. -|+ |.|-++.+.+||+.++...||+
T Consensus 11 ~~~CPiT~~~~---~~PV~s~~C~-----H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPF---EDPVKSKKCG-----HTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB----SSEEEESSS-------EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChh---hCCcCcCCCC-----CeecHHHHHHHHHhcCCCCCCC
Confidence 46888887665 346654 676 9999999999997778899999
No 89
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.33 E-value=9.8 Score=39.34 Aligned_cols=50 Identities=24% Similarity=0.562 Sum_probs=38.9
Q ss_pred CCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
-.+..|-||..-+ .++..+||. |-+=..||++=+. .+..||+|+.++.-.
T Consensus 82 ~sef~c~vc~~~l---~~pv~tpcg-----hs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRAL---YPPVVTPCG-----HSFCLECLDRSLD--QETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhc---CCCcccccc-----ccccHHHHHHHhc--cCCCCcccccccccc
Confidence 3578999997664 357788998 7777779888444 578999999999853
No 90
>PRK05978 hypothetical protein; Provisional
Probab=50.37 E-value=60 Score=29.37 Aligned_cols=19 Identities=11% Similarity=0.464 Sum_probs=14.9
Q ss_pred HHHHhcCCccccccccccccc
Q 018762 141 KWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 141 kWl~~kg~~~CeICk~~y~~v 161 (350)
.+++. +..|+.|+.+|...
T Consensus 47 g~Lkv--~~~C~~CG~~~~~~ 65 (148)
T PRK05978 47 AFLKP--VDHCAACGEDFTHH 65 (148)
T ss_pred ccccc--CCCccccCCccccC
Confidence 55655 57999999999864
No 91
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=49.23 E-value=8.3 Score=40.65 Aligned_cols=55 Identities=16% Similarity=0.423 Sum_probs=40.2
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc------CCcccccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------GNKTCEVCKQEVENLP 162 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k------g~~~CeICk~~y~~vp 162 (350)
.+|-+|++......+.++.=|+|+ .+||+.|-+--++.. ..+.|.+|...-..++
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 349999866544456666667887 799999987665432 3599999999877764
No 92
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=48.62 E-value=3.2 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.745 Sum_probs=28.0
Q ss_pred CccccccccCCccccccHHHHHHHHHhcCCccccccc
Q 018762 119 DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 155 (350)
Q Consensus 119 e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk 155 (350)
..+.++|+|. .|+|.+|-...|.++|...|--.+
T Consensus 31 RRIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 31 RRIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred CccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 3566899997 789999999999999987775443
No 93
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=48.48 E-value=13 Score=30.25 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 259 VLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 259 ~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
-.++||.-+++..++-+|++||.+-|.|++.++.+=++..+-
T Consensus 22 G~wfhiVarlVy~~PemA~~laeiiav~lVl~GgYRilda~i 63 (80)
T PRK13727 22 GVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWI 63 (80)
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 368899999999999999999999999999999887776654
No 94
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=46.72 E-value=31 Score=28.47 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=35.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 239 TTMVRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 239 ~~~~~~~~iw~yA~~qf~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
..+..-+=+|.++.. +.++.++..+....++....+...+.-+..+..+|.+|.++...++
T Consensus 47 ~~w~l~r~mw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~y~~~~~ 107 (108)
T PF10947_consen 47 PLWLLYRKMWLYAII-FLALLVALAIILILLGFPPGLGLGLSLAISLFFGMFANYWYYRHLK 107 (108)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555666766644 3334444555555555554445455555566677788888766554
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=45.69 E-value=23 Score=34.02 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=38.8
Q ss_pred CCCCCeeeecccccccCCC-ccccccccCCccccccHHHHHHHHHhcCCcccccccccccccc
Q 018762 101 PEEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 162 (350)
Q Consensus 101 ~eee~~CRICl~e~~e~~e-~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~vp 162 (350)
.+....|.|+..++..... ..+.||.| .+=+.++.+- . ....|++|+.+|....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~-k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL-K--KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh-c--ccccccccCCccccCC
Confidence 3456788888877632212 44679995 8889999886 2 3567999999999653
No 96
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=27 Score=34.84 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCeeeecccccccCCCcc-ccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDAL-KMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~l-ilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
...+|.+|.+. ...+. +.+|. |.+-+.|+.+=+...-+-+||.|+.....+
T Consensus 238 ~~~~C~~Cg~~---PtiP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 238 SDTECPVCGEP---PTIPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred CCceeeccCCC---CCCCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 46799999654 23454 45688 899999999888766678999999997743
No 97
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.84 E-value=4.5 Score=41.33 Aligned_cols=50 Identities=24% Similarity=0.481 Sum_probs=37.7
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.+..|-||++=+. .......|. |-|-.+|+.+=++. +++.||.|++...-
T Consensus 42 ~~v~c~icl~llk--~tmttkeCl-----hrfc~~ci~~a~r~-gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLK--KTMTTKECL-----HRFCFDCIWKALRS-GNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHH--hhcccHHHH-----HHHHHHHHHHHHHh-cCCCCchHHhhccc
Confidence 4689999985542 223455676 78888999888876 78999999998764
No 98
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=44.64 E-value=18 Score=29.53 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 247 IWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 247 iw~yA~~qf~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
+|+++ . -+++||.-+++..++-+|++||.+-|.|++..+.+=++..+-
T Consensus 16 mwv~~---l---G~wfhiVarlVy~~P~mA~~laeliav~lVl~G~YRiLdawi 63 (80)
T TIGR02741 16 LWVFS---L---GIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWI 63 (80)
T ss_pred chhhH---h---hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56655 2 368899999999999999999999999999999887776554
No 99
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=22 Score=36.26 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 95 DGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 95 ~~~e~i~eee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
++.|+.+.....|.+|+.. ..+||-|.-+=..+-+.|+.+..++ ..+||+=+++..
T Consensus 291 se~e~l~~~~~~CpvClk~-------r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKK-------RQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhc-------cCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcch
Confidence 3445666667899999854 4577777655566889999999985 569998777655
No 100
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=44.28 E-value=88 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=14.3
Q ss_pred hhccchhhhhhhhhhhccceEeeehhHHH
Q 018762 267 SLLHMQAVIVVLLSTFAGFGITMAGTSIL 295 (350)
Q Consensus 267 ~~~~~~~v~ai~la~~~Gfgi~~~~~~~~ 295 (350)
+....+.+++. ++|+.+.|-+.+..
T Consensus 151 ~~~~~~~~~sf----l~g~~~~~wl~y~q 175 (205)
T PF07895_consen 151 SFISFQSLLSF----LSGLLLLMWLVYFQ 175 (205)
T ss_pred HHhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 44556666665 66766665544433
No 101
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.99 E-value=12 Score=42.27 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=33.3
Q ss_pred CeeeecccccccCCCcccc-ccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lil-PC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
..|-.|...+ +-|.+. -|. |.+|+.|+. .+...||-|+-+++++
T Consensus 841 skCs~C~~~L---dlP~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTL---DLPFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCcc---ccceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhh
Confidence 5899996554 223333 377 999999999 5678999999988874
No 102
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.23 E-value=17 Score=40.82 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=28.0
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCE 152 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~Ce 152 (350)
...|.||+... .+...+..-|. |..|..|.+.||...+ .|+
T Consensus 1028 ~~~C~~C~l~V-~gss~~Cg~C~-----Hv~H~sc~~eWf~~gd--~Cp 1068 (1081)
T KOG0309|consen 1028 TFQCAICHLAV-RGSSNFCGTCG-----HVGHTSCMMEWFRTGD--VCP 1068 (1081)
T ss_pred eeeeeeEeeEe-eccchhhcccc-----ccccHHHHHHHHhcCC--cCC
Confidence 35688887554 22233444565 9999999999999843 665
No 103
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=43.07 E-value=45 Score=31.44 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=21.9
Q ss_pred cccccceecccchhhHHHHHHHHHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHh
Q 018762 182 QVTRYRVWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTA 238 (350)
Q Consensus 182 ~~~~~r~Wq~~pvLViismL~yFcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a 238 (350)
+..+...|..+.++.++.++.|+++- +.+ .++.+++|++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~llLf~~WllLs-----g~~--------s~~~l~lG~i~~~~v 68 (201)
T PRK08382 25 EAQKLPPWERFVLTWLILLAFWVIIS-----GDL--------SPRGLILGALTTLII 68 (201)
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHh-----CCc--------CHHHHHHHHHHHHHH
Confidence 33444567666544444454554442 221 245556666666543
No 104
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=42.94 E-value=30 Score=30.27 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=22.5
Q ss_pred ccchhhhhhhhhhhccceEeeehhHHHHHHHHH
Q 018762 269 LHMQAVIVVLLSTFAGFGITMAGTSILTDALRR 301 (350)
Q Consensus 269 ~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~r 301 (350)
.+.+....++++-|.|+.|+..=..+|+.|+++
T Consensus 105 ~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 105 GGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666667777777777777777777777663
No 105
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.48 E-value=1.6e+02 Score=27.19 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHH
Q 018762 224 LPFSCILGLLASTT 237 (350)
Q Consensus 224 ~Pf~~iLGlL~s~~ 237 (350)
+.++++.|++..+.
T Consensus 117 i~~~i~~G~~~~~~ 130 (206)
T PF06570_consen 117 ILVSIVGGLVFYFI 130 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555556555443
No 106
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=41.90 E-value=16 Score=26.90 Aligned_cols=35 Identities=11% Similarity=0.398 Sum_probs=14.0
Q ss_pred ccccccccCCccccccHHHH--HHHHHh---cCCccccccccc
Q 018762 120 ALKMECGCKGELAFAHRECA--VKWFSI---KGNKTCEVCKQE 157 (350)
Q Consensus 120 ~lilPC~CkGsl~~vH~~CL--~kWl~~---kg~~~CeICk~~ 157 (350)
.+..|++ .....|.+|. +.|+.. ++.+.||+|++.
T Consensus 11 ~i~~P~R---g~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 11 RIRIPVR---GKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-SSEEE---ETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEEeCcc---CCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3455655 2256788885 456643 466899999863
No 107
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=14 Score=40.93 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=38.3
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
.-.|..|.... -+.++.-|. |.|=+.|+++-+.++ .++||.|+..|..
T Consensus 643 ~LkCs~Cn~R~---Kd~vI~kC~-----H~FC~~Cvq~r~etR-qRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRW---KDAVITKCG-----HVFCEECVQTRYETR-QRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCch---hhHHHHhcc-----hHHHHHHHHHHHHHh-cCCCCCCCCCCCc
Confidence 45677886443 346777898 999999999999885 5899999999874
No 108
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=40.66 E-value=41 Score=32.35 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 018762 204 FCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWL 249 (350)
Q Consensus 204 FcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw~ 249 (350)
.+.+--|+-..+..+.-++|+.+..+||++.+++..++++--.+|+
T Consensus 124 a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf~i~w~ 169 (224)
T PF03839_consen 124 AICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILFLITWF 169 (224)
T ss_pred HHHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556667777777888888777888887776665555444444
No 109
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=40.48 E-value=15 Score=40.73 Aligned_cols=101 Identities=28% Similarity=0.401 Sum_probs=58.4
Q ss_pred CCCCCccccccCCCeEEEe--eCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCeeeecccccccCCC--ccc
Q 018762 49 NKDGSIRQMDSLGGVFRVI--PTTPRVAEGSGTTSSNTFPSNTTDKKDDGGEDIPE--EEAVCRICFIELGEGFD--ALK 122 (350)
Q Consensus 49 ~~~~s~~r~~s~gG~~rvv--p~~p~~~~~~~~~~~~~~p~~~~~~~~~~~e~i~e--ee~~CRICl~e~~e~~e--~li 122 (350)
.|++-++|+|- ||.--|| =+.|+++-.+....... . -.++|. -.+.|.||.|+..+... --.
T Consensus 70 ~kdGALKkTDn-~GWAHVVCALYIPEVrFgNV~TMEPI---i--------Lq~VP~dRfnKtCYIC~E~GrpnkA~~GAC 137 (900)
T KOG0956|consen 70 HKDGALKKTDN-GGWAHVVCALYIPEVRFGNVHTMEPI---I--------LQDVPHDRFNKTCYICNEEGRPNKAAKGAC 137 (900)
T ss_pred CcccceecccC-CCceEEEEEeeccceeecccccccce---e--------eccCchhhhcceeeeecccCCccccccccc
Confidence 35777888886 4454443 45677655543211111 1 112332 35899999876433211 124
Q ss_pred cccccCCccccccHHHHHHH--H-Hhc-----CCccccccccccccc
Q 018762 123 MECGCKGELAFAHRECAVKW--F-SIK-----GNKTCEVCKQEVENL 161 (350)
Q Consensus 123 lPC~CkGsl~~vH~~CL~kW--l-~~k-----g~~~CeICk~~y~~v 161 (350)
|-|+=.|=-.-||-.|++.- | .+- +-+.|--|++.|..+
T Consensus 138 MtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 138 MTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred eecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 55653333378999999864 1 121 238999999999875
No 110
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=40.09 E-value=27 Score=33.31 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHHh------hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhh--hccceEeeehhH
Q 018762 222 ISLPFSCILGLLASTTA------TTMVRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLST--FAGFGITMAGTS 293 (350)
Q Consensus 222 is~Pf~~iLGlL~s~~a------~~~~~~~~iw~yA~~qf~lv~l~~~ify~~~~~~~v~ai~la~--~~Gfgi~~~~~~ 293 (350)
++..+++++|++.++.- .+...+-|+|+. --..++.++|.-+++.-+.+.+.+.. .+-.+++....+
T Consensus 31 ~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~-----RgtPlLvqlf~~yfg~lp~~g~~~~~~~aaiial~l~~~A 105 (222)
T COG0765 31 LSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIF-----RGTPLLVQLFFIYFGLLPLLGIELDPFTAAVIALSLNSGA 105 (222)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHhHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34556667776666542 244556677664 33455556655555522222122221 222333456667
Q ss_pred HHHHHHH
Q 018762 294 ILTDALR 300 (350)
Q Consensus 294 ~~~~~~~ 300 (350)
-+.|++|
T Consensus 106 Y~aEi~R 112 (222)
T COG0765 106 YLAEIVR 112 (222)
T ss_pred HHHHHHH
Confidence 7888888
No 111
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.85 E-value=26 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=21.2
Q ss_pred ccccHHHHHHHHHh----cCC-----ccccccccccc
Q 018762 132 AFAHRECAVKWFSI----KGN-----KTCEVCKQEVE 159 (350)
Q Consensus 132 ~~vH~~CL~kWl~~----kg~-----~~CeICk~~y~ 159 (350)
+-||+-||-.|++. +.+ -.||-|..++.
T Consensus 192 kpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 192 KPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred CcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 78999999999964 211 47988887654
No 112
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=38.76 E-value=1.2e+02 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.494 Sum_probs=17.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhh
Q 018762 219 AIAISLPFSCILGLLASTTAT 239 (350)
Q Consensus 219 Ai~is~Pf~~iLGlL~s~~a~ 239 (350)
++.++.|++++.|+++++++.
T Consensus 75 s~ilaiP~A~~~Gi~FA~lsf 95 (148)
T PF01146_consen 75 SLILAIPLAFLWGILFACLSF 95 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999998766
No 113
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.08 E-value=15 Score=34.68 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=27.2
Q ss_pred CeeeecccccccCCCccccccccCCcccccc-HHHHHHHHHhcCCccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAH-RECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH-~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
..||.|.+.. ...+.+||+ |+.| ..|-.. ...||+|+....
T Consensus 159 ~~Cr~C~~~~---~~VlllPCr-----Hl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 159 RSCRKCGERE---ATVLLLPCR-----HLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred ccceecCcCC---ceEEeeccc-----ceEeccccccc------CccCCCCcChhh
Confidence 3499997552 347889998 6654 344332 457999997654
No 114
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=37.63 E-value=64 Score=32.81 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.0
Q ss_pred hhhhhhhhhhhccceEeeehhHHH
Q 018762 272 QAVIVVLLSTFAGFGITMAGTSIL 295 (350)
Q Consensus 272 ~~v~ai~la~~~Gfgi~~~~~~~~ 295 (350)
..++.+-+..-+.+++++..|+|-
T Consensus 258 P~iV~vpl~~~sd~~~t~lAnsIT 281 (357)
T PRK12652 258 PTMVRVRAAVRSGLPLTTLANSIT 281 (357)
T ss_pred CeEEEEeccCCChHHHHHHHHHHh
Confidence 567788888888888888888764
No 115
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=36.84 E-value=20 Score=27.56 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
+..|..|... +....++||. |++=+.|..-+- .+-||+|+.++..
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCg-----H~I~~~~f~~~r----YngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCG-----HLICDNCFPGER----YNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc---cccccccccc-----ceeeccccChhh----ccCCCCCCCcccC
Confidence 4577777543 3345679999 888888866553 4689999999873
No 117
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=37 Score=34.91 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=19.1
Q ss_pred hHhhcccccchhhhhhhhHHHHHHHHHH
Q 018762 209 ELLVGKMKSGAIAISLPFSCILGLLAST 236 (350)
Q Consensus 209 qLlv~~~g~~Ai~is~Pf~~iLGlL~s~ 236 (350)
=||-..|..++.+.|++.+|+|+++.+.
T Consensus 208 PLWP~~mR~gvyY~sig~~gfl~~IlvL 235 (372)
T KOG2927|consen 208 PLWPRRMRQGVYYLSIGAGGFLAFILVL 235 (372)
T ss_pred ccCcHHHhcceeeeecchhHHHHHHHHH
Confidence 4566677778888888777776654433
No 118
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=21 Score=40.40 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=26.2
Q ss_pred CCCeeeecccccccCCCccccccccCCccccccHHHHHHHHH
Q 018762 103 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS 144 (350)
Q Consensus 103 ee~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~ 144 (350)
-.+.|.+|..... ...-.+-||. |.||++|+.+=..
T Consensus 816 p~d~C~~C~~~ll-~~pF~vf~Cg-----H~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLL-IKPFYVFPCG-----HCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhh-cCcceeeecc-----chHHHHHHHHHHH
Confidence 3578999976652 2223467999 9999999987653
No 119
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=30.32 E-value=15 Score=42.45 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=35.1
Q ss_pred CCCCeeeecccccccCCCcc--ccccccCCccccccHHHHHHHHHhcCCccccccccccc
Q 018762 102 EEEAVCRICFIELGEGFDAL--KMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 102 eee~~CRICl~e~~e~~e~l--ilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
++...|-||++..++..+.+ --.|+ -.||++|.-.=+..-|.+.|--|-+.=+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cn-----l~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCN-----LAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCc-----chhhhhccCCCCCCCCcEeehhhccCcC
Confidence 46789999998754433433 23455 7899999983333346677877766544
No 120
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=28 Score=35.05 Aligned_cols=46 Identities=26% Similarity=0.614 Sum_probs=37.9
Q ss_pred CeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 105 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 105 ~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
..|-||...+ .++++.-|. |+|-..|+.+=++. +..|.||.+....
T Consensus 242 f~c~icr~~f---~~pVvt~c~-----h~fc~~ca~~~~qk--~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYF---YRPVVTKCG-----HYFCEVCALKPYQK--GEKCYVCSQQTHG 287 (313)
T ss_pred cccccccccc---ccchhhcCC-----ceeehhhhcccccc--CCcceeccccccc
Confidence 5699998765 357888898 99999999887764 5799999998775
No 121
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=29.37 E-value=1.4e+02 Score=29.64 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=12.9
Q ss_pred hccceEeeehhHHHHHHHH
Q 018762 282 FAGFGITMAGTSILTDALR 300 (350)
Q Consensus 282 ~~Gfgi~~~~~~~~~~~~~ 300 (350)
..+||+..+.--+|+|++|
T Consensus 248 ~~AfGL~vTLVWLYlEILR 266 (274)
T PF12811_consen 248 YAAFGLLVTLVWLYLEILR 266 (274)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776
No 122
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.15 E-value=36 Score=35.66 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhc------CCcccccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------GNKTCEVCKQEVENLP 162 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~k------g~~~CeICk~~y~~vp 162 (350)
-..|-||+++.........+||. |++-+.|+...+... ....|+-|+..=...|
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~-----Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~ 243 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCS-----HVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP 243 (445)
T ss_pred cccceeeehhhcCcceeeecccc-----hHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc
Confidence 47899999775222345679999 999999999999763 2378888776644433
No 123
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=27.45 E-value=54 Score=25.78 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccchhh--hhhhhhhhccceEeeehhHHHHHHHH
Q 018762 247 IWLYAFIQFGLVVLSAHLFYSLLHMQAV--IVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 247 iw~yA~~qf~lv~l~~~ify~~~~~~~v--~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
+|.|....+++++..+-++| .++.... +-++++-..++=|+|..++++..=+|
T Consensus 1 v~~Ytl~Rl~lfv~~~~vi~-~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R 55 (69)
T PF14012_consen 1 VLRYTLARLGLFVVLFAVIW-LVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLR 55 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888877777 5555444 22333444445556666666654444
No 124
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=27.32 E-value=28 Score=35.35 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCeeeecccccccCCCccccccccCCccccccHHHHHHHHHhcCCccccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
...|++|. ++- -+...+..|- |-|=+.||.+-|.. +++||.|+-.+...
T Consensus 15 ~itC~LC~-GYl-iDATTI~eCL-----HTFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCG-GYL-IDATTITECL-----HTFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhcc-cee-ecchhHHHHH-----HHHHHHHHHHHHHH--hccCCccceeccCc
Confidence 56899985 331 2335567886 78889999999988 78999999877654
No 125
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=26.85 E-value=71 Score=30.55 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=18.9
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 018762 211 LVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIW 248 (350)
Q Consensus 211 lv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw 248 (350)
+.+++..+-+.=.+|.++-+|.|-.++|...+...+++
T Consensus 27 ~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~ 64 (255)
T TIGR02163 27 LKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALI 64 (255)
T ss_pred EEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHH
Confidence 33444433222135555556666666666555544443
No 126
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=26.33 E-value=65 Score=31.02 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhHHH
Q 018762 224 LPFSCILGLLASTTATTMVRKSFIWLY 250 (350)
Q Consensus 224 ~Pf~~iLGlL~s~~a~~~~~~~~iw~y 250 (350)
+|+++-+|++-.+.+..++....++..
T Consensus 47 ~~~~dp~~~~q~~~a~~~~~~~~l~g~ 73 (271)
T PRK09477 47 IPLTDPLATLQSLAAGHLPATVALIGA 73 (271)
T ss_pred ccccCHHHHHHHHHhcChhHHHHHHHH
Confidence 555555666666666655554444443
No 127
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=26.02 E-value=38 Score=37.38 Aligned_cols=49 Identities=6% Similarity=-0.036 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhh----hhhhhhhc-cceEeeeh
Q 018762 242 VRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVI----VVLLSTFA-GFGITMAG 291 (350)
Q Consensus 242 ~~~~~iw~yA~~qf~lv~l~~~ify~~~~~~~v~----ai~la~~~-Gfgi~~~~ 291 (350)
+...+...|--- -.++.+-+.+|-+|.|=.+.. .+.++.+. +|-=+||.
T Consensus 147 ~cPvc~~~Y~~~-e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR 200 (694)
T KOG4443|consen 147 YCPVCLIVYQDS-ESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCR 200 (694)
T ss_pred cCchHHHhhhhc-cchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceee
Confidence 344555566533 356677888888888754432 45566666 77777775
No 128
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=26.02 E-value=2.9e+02 Score=26.53 Aligned_cols=72 Identities=26% Similarity=0.364 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhHhhc---ccccchhh--------hh-hh-------hHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 018762 196 VIVSMLAYFCFLEELLVG---KMKSGAIA--------IS-LP-------FSCILGLLASTTATTMVRKSFIWLYAFIQFG 256 (350)
Q Consensus 196 ViismL~yFcfLeqLlv~---~~g~~Ai~--------is-~P-------f~~iLGlL~s~~a~~~~~~~~iw~yA~~qf~ 256 (350)
-+.|+++|--|+--|++. +..++.|. |+ +| .+..||+++.|.+--|.+++-- -++.++..
T Consensus 44 RiCSWiAYapFITlLl~Iw~QdistssiianaKiaaCialip~~frfrtyglt~Gl~sLW~aLLWDiKevQ-SLviLeRm 122 (239)
T PF13105_consen 44 RICSWIAYAPFITLLLVIWNQDISTSSIIANAKIAACIALIPCLFRFRTYGLTLGLFSLWGALLWDIKEVQ-SLVILERM 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence 467899998887777763 33332211 11 11 1334788888887777766644 34555555
Q ss_pred HHHHHHHHhhhh
Q 018762 257 LVVLSAHLFYSL 268 (350)
Q Consensus 257 lv~l~~~ify~~ 268 (350)
.-.+..|..|-+
T Consensus 123 ~sLmTs~~~Yll 134 (239)
T PF13105_consen 123 TSLMTSHYLYLL 134 (239)
T ss_pred HHHHHHHHHHHH
Confidence 555566655544
No 129
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=25.37 E-value=29 Score=19.96 Aligned_cols=12 Identities=17% Similarity=0.708 Sum_probs=8.1
Q ss_pred cccccccccccc
Q 018762 150 TCEVCKQEVENL 161 (350)
Q Consensus 150 ~CeICk~~y~~v 161 (350)
.|++|+..|.+.
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 699999998863
No 130
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=25.21 E-value=33 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=19.5
Q ss_pred cccccHHHHHHHHHhcCCccccccccccc
Q 018762 131 LAFAHRECAVKWFSIKGNKTCEVCKQEVE 159 (350)
Q Consensus 131 l~~vH~~CL~kWl~~kg~~~CeICk~~y~ 159 (350)
-||.-..||..-+.. +..||||+++..
T Consensus 20 dHYLCl~CLt~ml~~--s~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSR--SDRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT-SS--SSEETTTTEE--
T ss_pred chhHHHHHHHHHhcc--ccCCCcccCcCc
Confidence 388888999988765 679999999865
No 131
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=25.06 E-value=83 Score=33.11 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=35.2
Q ss_pred HHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhH
Q 018762 204 FCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIW 248 (350)
Q Consensus 204 FcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw 248 (350)
.|++|.+++.|+|..-.....++++++-++++++++..-....+|
T Consensus 381 I~~~El~IciKfg~~~f~~t~~~~Ivlw~l~~v~~t~~~v~~~v~ 425 (466)
T KOG2735|consen 381 ICALELLICIKFGSHMFIKTQINYIVLWLLMGVIGTFTCVLLAVW 425 (466)
T ss_pred HHHHHhhhheeeCCceeeecchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999998888889999998888887766554444444
No 132
>PF15013 CCSMST1: CCSMST1 family
Probab=24.92 E-value=81 Score=25.74 Aligned_cols=19 Identities=47% Similarity=1.055 Sum_probs=11.7
Q ss_pred ecccchhh-HHHHHHHHHHH
Q 018762 189 WQDVPILV-IVSMLAYFCFL 207 (350)
Q Consensus 189 Wq~~pvLV-iismL~yFcfL 207 (350)
||-.|+.+ ++.+|.|||+|
T Consensus 31 yq~~~is~sl~~fliyFC~l 50 (77)
T PF15013_consen 31 YQVYPISLSLAAFLIYFCFL 50 (77)
T ss_pred eeeehhHHHHHHHHHHHhhc
Confidence 45444332 24688999994
No 133
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=24.92 E-value=92 Score=32.13 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 018762 248 WLYAFIQFGL 257 (350)
Q Consensus 248 w~yA~~qf~l 257 (350)
|.|....+++
T Consensus 265 ~~ysf~r~ai 274 (391)
T KOG4583|consen 265 WGYSFFRVAI 274 (391)
T ss_pred HHHHHHHHHH
Confidence 6687666553
No 134
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=24.79 E-value=3.6e+02 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhccch
Q 018762 253 IQFGLVVLSAHLFYSLLHMQ 272 (350)
Q Consensus 253 ~qf~lv~l~~~ify~~~~~~ 272 (350)
.-..+.+.+..+|..+++++
T Consensus 120 ~s~~~~~~i~~~F~~~L~v~ 139 (141)
T PF07331_consen 120 ISVVFAAVIYFVFAKLLGVP 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 33555566667777777653
No 135
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=24.76 E-value=2.9e+02 Score=22.24 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHH
Q 018762 255 FGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTD 297 (350)
Q Consensus 255 f~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~ 297 (350)
..+-.+..+++-..++.+..+ +++.|.++++..|+++-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----a~~~~~~i~~~~~f~~~k 113 (117)
T PF04138_consen 75 LLLNTLILWLLVDWLGIPYLI----AKLIAIGIVFVVNFLLSK 113 (117)
T ss_pred HHHHHHHHHHHHHHhCchHHH----HHHHHHHHHHHHHHHHHh
Confidence 334445556666777777666 455566666666666543
No 136
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=23.77 E-value=1.2e+02 Score=29.53 Aligned_cols=90 Identities=23% Similarity=0.318 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccch
Q 018762 193 PILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQ 272 (350)
Q Consensus 193 pvLViismL~yFcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw~yA~~qf~lv~l~~~ify~~~~~~ 272 (350)
|+-+|+.+++-|+.|..||.+.+-==++-|-+|=-.++|...++++--|..--|..++-..|.+|--+.-+ +.-
T Consensus 29 PvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~ayyklLkka~~GL~si~~d------~~~ 102 (252)
T KOG3972|consen 29 PVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRFAYYKLLKKAQEGLNSITED------GRL 102 (252)
T ss_pred CeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------CCC
Confidence 55567767777777777766552221222445555667777766655555555555555566555433332 222
Q ss_pred hhhhhhhhhhccceEe
Q 018762 273 AVIVVLLSTFAGFGIT 288 (350)
Q Consensus 273 ~v~ai~la~~~Gfgi~ 288 (350)
+.---+||-++|.|.+
T Consensus 103 ~~s~h~lAyVsGLgfG 118 (252)
T KOG3972|consen 103 HNSRHMLAYVSGLGFG 118 (252)
T ss_pred chhHHHHHHHhccchh
Confidence 2333456667766654
No 137
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=11 Score=39.34 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCeeeecccccccC-CCccccccccCCccccccHHHHHHHHHhcCCcccccccccccc
Q 018762 104 EAVCRICFIELGEG-FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 160 (350)
Q Consensus 104 e~~CRICl~e~~e~-~e~lilPC~CkGsl~~vH~~CL~kWl~~kg~~~CeICk~~y~~ 160 (350)
...|.||...+.+. ++.-...|. +..|.+||.+|+.. ...|+-|+.++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g-----~~~~~~kL~k~L~~--~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCG-----HIYHHGKLSKWLAT--KRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhc-----ccchhhHHHHHHHH--HHHhHHHHhhhhh
Confidence 36799998877543 223345576 88999999999987 4688888887764
No 138
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.44 E-value=36 Score=22.11 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=10.1
Q ss_pred Cccccccccccc
Q 018762 148 NKTCEVCKQEVE 159 (350)
Q Consensus 148 ~~~CeICk~~y~ 159 (350)
...||.|+++|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 578999999875
No 139
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.23 E-value=1.7e+02 Score=25.50 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHH
Q 018762 222 ISLPFSCILGLLASTT 237 (350)
Q Consensus 222 is~Pf~~iLGlL~s~~ 237 (350)
.+.++-.+||++++++
T Consensus 107 ~~~~~Rvllgl~~al~ 122 (142)
T PF11712_consen 107 WSFPYRVLLGLFGALL 122 (142)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3556677778777655
No 140
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=22.61 E-value=43 Score=26.00 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHhc
Q 018762 134 AHRECAVKWFSIK 146 (350)
Q Consensus 134 vH~~CL~kWl~~k 146 (350)
||+.|+.+|++.+
T Consensus 37 V~r~~Vr~W~kqe 49 (58)
T PF09607_consen 37 VSRRQVRKWRKQE 49 (58)
T ss_dssp S-HHHHHHHHTTH
T ss_pred ccHHHHHHHHHHH
Confidence 7999999999753
No 141
>PHA03096 p28-like protein; Provisional
Probab=22.55 E-value=54 Score=32.50 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=30.4
Q ss_pred CeeeecccccccC---C--CccccccccCCccccccHHHHHHHHHhcC-Ccccccccc
Q 018762 105 AVCRICFIELGEG---F--DALKMECGCKGELAFAHRECAVKWFSIKG-NKTCEVCKQ 156 (350)
Q Consensus 105 ~~CRICl~e~~e~---~--e~lilPC~CkGsl~~vH~~CL~kWl~~kg-~~~CeICk~ 156 (350)
.+|-||++...+. + ......|. |-+=-.|+..|...+. +..|+.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~-----h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIK-----HEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCC-----cHHHHHHHHHHHHhhhhcccCccccc
Confidence 7899998765322 1 12334577 8888999999998753 344444443
No 142
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=22.27 E-value=1.1e+02 Score=29.79 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=30.1
Q ss_pred HHhHhhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 018762 207 LEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWL 249 (350)
Q Consensus 207 LeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw~ 249 (350)
+--|+-..+..+..++|+.+..+||++.+++..++++--.+|+
T Consensus 135 lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilF~i~~~ 177 (232)
T TIGR00869 135 LFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILFVLTLI 177 (232)
T ss_pred hcccChHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778888888888888887777666655555554
No 143
>COG2246 Predicted membrane protein [Function unknown]
Probab=22.06 E-value=4.3e+02 Score=23.17 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 253 IQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 253 ~qf~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
.....+.+...+.|-+.+.-...++.+|...|.++++..|+++-..+.
T Consensus 87 ~~~lg~~~~~~~~~~l~~~~~~~~~~~a~~i~~~~~~i~nfi~s~~v~ 134 (139)
T COG2246 87 AVLLGLAVLLLVLYILTLGLLLVAYLIANLIGIVAAFIINFLLSKRVF 134 (139)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555556666665555566888999999999999998876643
No 144
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=21.84 E-value=2.3e+02 Score=27.30 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhhh
Q 018762 199 SMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVL 278 (350)
Q Consensus 199 smL~yFcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~~~~~~~~iw~yA~~qf~lv~l~~~ify~~~~~~~v~ai~ 278 (350)
.++..|.++..+..++-|..++ +++-|++++=++.. +-..+--.+-+|+....-....++...+.+.+ +..+..| .
T Consensus 5 ~l~~if~~lll~igg~~G~~sl-lsL~~n~~~i~~~~-i~~~~~G~~~~~v~~i~~~~~~~vtl~lv~G~-n~kt~~A-~ 80 (244)
T PF07907_consen 5 ILLIIFILLLLLIGGKKGLRSL-LSLIFNFLIIFFVL-IPLILNGYNPILVTIIAAILITAVTLFLVNGF-NKKTLAA-F 80 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHH-H
Confidence 3455566666677778888776 55555544322221 11111224445554433222222233333332 3344433 3
Q ss_pred hhhhccceEeeehhHHHHHHHH
Q 018762 279 LSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 279 la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
+++..|..+++....+..+..+
T Consensus 81 ~~tl~~~~~~~~l~~~~~~~~~ 102 (244)
T PF07907_consen 81 IGTLIGVLLAGILALLVMKLAH 102 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6677777666666666555544
No 145
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=18 Score=36.46 Aligned_cols=44 Identities=25% Similarity=0.671 Sum_probs=29.3
Q ss_pred CCeeeecccccccCCCccccccccCCccccc-cHHHHHHHHHhcCCccccccccccccc
Q 018762 104 EAVCRICFIELGEGFDALKMECGCKGELAFA-HRECAVKWFSIKGNKTCEVCKQEVENL 161 (350)
Q Consensus 104 e~~CRICl~e~~e~~e~lilPC~CkGsl~~v-H~~CL~kWl~~kg~~~CeICk~~y~~v 161 (350)
...|+||++.. -+-+.++|. |.| -.+|=. .-+.||||++.+..+
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCG-----HmVtCt~CGk------rm~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECG-----HMVTCTKCGK------RMNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCC---cceEEeecC-----cEEeehhhcc------ccccCchHHHHHHHH
Confidence 67899998653 345779998 443 233322 225899999987754
No 146
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=2.6e+02 Score=30.75 Aligned_cols=97 Identities=24% Similarity=0.305 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHhHhhcccccchhhhhhhhHHHHHHHHHHHhh----------------------------------
Q 018762 194 ILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTAT---------------------------------- 239 (350)
Q Consensus 194 vLViismL~yFcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~a~---------------------------------- 239 (350)
+++--.+++.|+++..++-++..++|+ ||+.++.||+.|+.+
T Consensus 404 ~l~PGivf~~~f~lN~~lW~~~SSgAv----PF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q 479 (628)
T KOG1278|consen 404 FLFPGIVFAIFFVLNFFLWGKHSSGAV----PFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQ 479 (628)
T ss_pred hhcchHHHHHHHHHHHHhhcCCCCCcc----cHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCC
Confidence 334345677788888899999999997 999999998887644
Q ss_pred hhhhhhhhHH-----------HHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 240 TMVRKSFIWL-----------YAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 240 ~~~~~~~iw~-----------yA~~qf~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
.+..+.+.-+ |-=++|.+--+-.|-||-|+|+-=++-++|..-. +--+|++.|+.
T Consensus 480 ~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtc------aeisIvl~Yf~ 545 (628)
T KOG1278|consen 480 PWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTC------AEISIVLTYFQ 545 (628)
T ss_pred ccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 1222222222 2234455555666778888888777776665322 33455555554
No 147
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=21.15 E-value=19 Score=35.77 Aligned_cols=35 Identities=31% Similarity=0.651 Sum_probs=18.0
Q ss_pred eeeecccccccCCCccccccccCCccccccHHHHHHHHHh
Q 018762 106 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI 145 (350)
Q Consensus 106 ~CRICl~e~~e~~e~lilPC~CkGsl~~vH~~CL~kWl~~ 145 (350)
+|.+|++++..++..-..-|.| .+|..|+..|+++
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLP-----VFHGKCYPNWLTT 250 (288)
T ss_pred ecHHHHHHHhcccccchhhccc-----ccccccccccccc
Confidence 5666665553222223334443 5666666666654
No 148
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=20.65 E-value=32 Score=24.27 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=26.3
Q ss_pred eeeecccccccCCCcc-ccccccCCccccccHHHHHHHHH---h-cCCcccccccc
Q 018762 106 VCRICFIELGEGFDAL-KMECGCKGELAFAHRECAVKWFS---I-KGNKTCEVCKQ 156 (350)
Q Consensus 106 ~CRICl~e~~e~~e~l-ilPC~CkGsl~~vH~~CL~kWl~---~-kg~~~CeICk~ 156 (350)
.|.||.... ++++.+ =.-|. .++|..|+.-=.. . .+.+.|+.|+.
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~-----~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCN-----RWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTS-----CEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCC-----hhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 478887632 222222 23455 7999999854332 1 23688888763
No 149
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.51 E-value=1.2e+02 Score=27.14 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhccceEeeehhHH
Q 018762 272 QAVIVVLLSTFAGFGITMAGTSI 294 (350)
Q Consensus 272 ~~v~ai~la~~~Gfgi~~~~~~~ 294 (350)
..++.+.+..=+++++++..|+|
T Consensus 92 P~iv~vp~~~~~~~~~~~lan~I 114 (162)
T PRK08965 92 PGFVAVPLRLRSDLALTLLANII 114 (162)
T ss_pred CeEEEEeecCCChHHHHHHHHHH
Confidence 45677777777778877777776
No 150
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=20.48 E-value=3.2e+02 Score=27.54 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHhHhhcccccchhhhhhhhHHHHHHHHHHH-hhhhhhhhhh
Q 018762 201 LAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTT-ATTMVRKSFI 247 (350)
Q Consensus 201 L~yFcfLeqLlv~~~g~~Ai~is~Pf~~iLGlL~s~~-a~~~~~~~~i 247 (350)
+..+++|+.+...++|..++-++.|.|.-.++++++. ++++=.+-.+
T Consensus 150 ~sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~LaSRl~~~~~v 197 (292)
T KOG3059|consen 150 MSVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLASRLEKSIHV 197 (292)
T ss_pred HHHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHHHhcCCchHH
Confidence 3456778999999999999999999888877777654 4444334344
No 151
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.26 E-value=50 Score=27.65 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.5
Q ss_pred ccchhhhhhhhhhhccceEeee
Q 018762 269 LHMQAVIVVLLSTFAGFGITMA 290 (350)
Q Consensus 269 ~~~~~v~ai~la~~~Gfgi~~~ 290 (350)
+++++++|..+|...|+|+.-.
T Consensus 62 ~kl~t~~Af~~Ai~~Sl~~~~~ 83 (90)
T PF11674_consen 62 LKLNTFWAFPLAILISLAITQL 83 (90)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888776433
No 152
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=20.16 E-value=2.8e+02 Score=24.16 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.9
Q ss_pred hhhhhhhhhccceEeeehhHHHHHHHHHh
Q 018762 274 VIVVLLSTFAGFGITMAGTSILTDALRRR 302 (350)
Q Consensus 274 v~ai~la~~~Gfgi~~~~~~~~~~~~~r~ 302 (350)
...+.+|+..+|.++...|..+...+|++
T Consensus 67 ~~ri~~aS~~a~lisq~~d~~if~~lk~~ 95 (145)
T PF02592_consen 67 TPRIALASLIAFLISQLLDVYIFSKLKRK 95 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778899999999999999999999955
No 153
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.12 E-value=2.1e+02 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH-HHhhhhccchhhhhhhhhhhccceEeeehhHHHH
Q 018762 251 AFIQFGLVVLSA-HLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILT 296 (350)
Q Consensus 251 A~~qf~lv~l~~-~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~ 296 (350)
-..|..+..+++ .+.|+++|.+-==++.-+.+-|||.+++-|.+..
T Consensus 312 l~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a~an 358 (368)
T PF03616_consen 312 LAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNAMAN 358 (368)
T ss_pred HHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHHHHH
Confidence 456666656664 4568899987555556679999999999998753
No 154
>PHA02972 hypothetical protein; Provisional
Probab=20.08 E-value=2.3e+02 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhccchhhhhhhhhhhccceEeeehhHHHHHHHH
Q 018762 255 FGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 300 (350)
Q Consensus 255 f~lv~l~~~ify~~~~~~~v~ai~la~~~Gfgi~~~~~~~~~~~~~ 300 (350)
.++-++|.|+|--..+.|.++-+ |.|.-+---..-.++.|.|
T Consensus 48 iAfnilfLYifS~if~iN~iIii----Fl~i~~irktgKfi~nYIR 89 (109)
T PHA02972 48 IAFNILFLYIFSCIFDINIIIII----FLGIIFIRKTGKFIINYIR 89 (109)
T ss_pred HHHHHHHHHHHHHHhcCceEeee----eehhhhhhhhhHHHHHHHH
Confidence 45557888888888888887765 3343322222234567777
Done!