BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018763
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
W EED + V++YGPK WS +++ + R K C ERW N+L P +KK S T+EE
Sbjct: 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
++ + GN+W +IA +PGRT
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRT 143
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63
+ RW EED L+ V+Q G +W ++ N NR C RW+ L P + KG T
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVIA---NYLPNRTDVQCQHRWQKVLNPELIKGPWT 62
Query: 64 DEEQHLVIHLQAKHGNK-WKKIAAEVPGRTAK 94
EE VI L K+G K W IA + GR K
Sbjct: 63 KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGK 94
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
W EED + V++YGPK WS +++ + R K C ERW N+L P +KK S T+EE
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
++ + GN+W +IA +PGRT
Sbjct: 64 DRIIYQAHKRLGNRWAEIAKLLPGRT 89
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition
Helices
Length = 105
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
W EED + V++YGPK WS +++ + R K C ERW N+L P +KK S T+EE
Sbjct: 7 WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
++ + GN+W +IA +PGRT
Sbjct: 64 DRIIYQAHKRLGNRWAEIAKLLPGRT 89
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
W EED + +V++YGPK WS +++ + R K C ERW N+L P +KK S T+EE
Sbjct: 30 WTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
++ + GN+W +IA +PGRT
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRT 112
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 39 NRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVI-HLQAKHGNKWKKIAAEVPGRTAKRLG 97
NR C RW+ L P + KG T EE VI H+Q +W IA + GR K+
Sbjct: 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66
Query: 98 KWW 100
+ W
Sbjct: 67 ERW 69
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEE 66
W EED + VK+YG K+W+ +++ + R K C ERW N+L P +KK S T+EE
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLK---GRLGKQCRERWHNHLNPEVKKSSWTEEE 66
Query: 67 QHLVIHLQAKHGNKWKKIAAEVPGRT 92
++ GN+W +IA +PGRT
Sbjct: 67 DRIIFEAHKVLGNRWAEIAKLLPGRT 92
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 11 EDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLV 70
ED L+R YVK+ GP+ W ++ + NR K C ERW N+L P + K + T EE +
Sbjct: 9 EDDLIREYVKENGPQNWPRITSFL---PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETI 65
Query: 71 IHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
K G+KW IA +PGRT + W
Sbjct: 66 FRNYLKLGSKWSVIAKLIPGRTDNAIKNRW 95
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSL 62
++Q++ EED +L+ V Q+G +W ++ T NR+A+ C +RWKNYL P I
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAA---TFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 63 TDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106
T EE L++ ++G +W IA PGRT + W K
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHL 69
EED L+ V +YG K+W +SQ M + R+ + C ERW NY+ P ++ + EE L
Sbjct: 7 EEDLKLQQLVMRYGAKDWIRISQLM---ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 70 VIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 112
+ A++G KW KI+ + R+ + W + + + QK
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
W EED L V++YGPK WS +++ + R K C ERW N+L P
Sbjct: 6 WTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
W EED + V++YGPK WS +++ + R K C ERW N+L P
Sbjct: 6 WTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
W EED + V++YGPK WS +++ + R K C ERW N+L P
Sbjct: 6 WTKEEDQRVIELVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNP 51
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59
WR ED +L+A V +YG +WS ++ ++ + AK C RW +L P IKK
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKK 61
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53
+W EED LRA V+Q+G ++W F++ NR + C RW L
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVL 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 IKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
+KK S T+EE ++ + GN+W +IA +PGRT + W
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 44
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 IKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100
+KK S T+EE ++ + GN+W +IA +PGRT + W
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 46
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLKPGI 57
++Q+W EE ++A V++YG W+ +S+ N P +NR A +RW+ + G+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISK--NYPFVNRTAVMIKDRWRTMKRLGM 54
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
+ RW EED L+ V+Q G +W ++ N NR C RW+ L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA---NYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55
+ RW EED L+ V+Q G +W ++ N NR C RW+ L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA---NYLPNRTDVQCQHRWQKVLNP 51
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLKPGI 57
+ ++Q+W EE ++A V++YG W+ +S+ N P +NR A +RW+ + G+
Sbjct: 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISK--NYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLKPGI 57
+ ++Q+W EE ++A V++YG W+ +S+ N P +NR A +RW+ + G+
Sbjct: 11 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISK--NYPFVNRTAVMIKDRWRTMKRLGM 66
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLKPGI 57
+ ++Q+W EE ++A V++YG W+ +S+ N P +NR A +RW+ + G+
Sbjct: 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISK--NYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLKPGI 57
+ ++Q+W EE ++A V++YG W+ +S+ N P +NR A +RW+ + G+
Sbjct: 7 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISK--NYPFVNRTAVMIKDRWRTMKRLGM 62
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 2 KERQRWRAEEDALLRAYVKQYGPKEWS--FVSQRMNTPLNRDAKSCLERWK 50
++RQ W EED LR+ V++YG WS + + N NR + +RW+
Sbjct: 9 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN---NRTSVMLKDRWR 56
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 2 KERQRWRAEEDALLRAYVKQYGPKEWS--FVSQRMNTPLNRDAKSCLERWK 50
++RQ W EED LR+ V++YG WS + + N NR + +RW+
Sbjct: 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN---NRTSVMLKDRWR 55
>pdb|1A7E|A Chain A, Hydroxomet Myohemerythrin From Themiste Zostericola
Length = 118
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 297 RIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKF 334
++ ++ E+I GL +AK ++W+ H++ T F
Sbjct: 75 KMHKDFLEKIGGLSAPVDAKNVDYCKEWNVNHIKGTDF 112
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 2 KERQRWRAEEDALLRAYVKQYGPKEWS--FVSQRMNTPLNRDAKSCLERWK 50
++RQ W EED LR+ V++YG WS + + N NR + +RW+
Sbjct: 1 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN---NRTSVMLKDRWR 48
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 3 ERQRWRAEEDALLRAYVKQYGPKEWS--FVSQRMNTPLNRDAKSCLERWK 50
+RQ W EED LR+ V++YG WS + + N NR + +RW+
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN---NRTSVMLKDRWR 47
>pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|E Chain E, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|F Chain F, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|G Chain G, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|H Chain H, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
Length = 412
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 296 DRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKF 334
DRI A I+GL D AK +LA W AK KF
Sbjct: 175 DRIAA----YISGLPEDTRAKRAELAAAWQAKGFSSFKF 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,440,700
Number of Sequences: 62578
Number of extensions: 340397
Number of successful extensions: 1032
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 46
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)