Query 018763
Match_columns 350
No_of_seqs 286 out of 1449
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.7E-33 3.3E-37 228.0 11.4 104 4-110 1-104 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.7E-32 9.2E-37 224.0 11.3 102 3-107 3-104 (105)
3 3zqc_A MYB3; transcription-DNA 100.0 3.2E-32 1.1E-36 232.5 10.6 114 4-120 2-115 (131)
4 3osg_A MYB21; transcription-DN 100.0 2E-31 7E-36 226.2 12.3 102 2-107 9-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 7.5E-31 2.6E-35 222.9 10.5 102 3-107 26-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-28 3.8E-33 216.7 10.0 102 3-107 57-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 2.3E-28 8E-33 214.6 6.7 102 3-107 5-107 (159)
8 2dim_A Cell division cycle 5-l 99.8 6.6E-21 2.3E-25 145.7 5.3 63 2-67 7-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 8.3E-20 2.9E-24 154.7 5.6 75 30-107 1-76 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 4.1E-17 1.4E-21 150.8 8.5 102 3-107 7-200 (246)
11 2juh_A Telomere binding protei 99.7 2.5E-17 8.4E-22 138.6 5.9 82 2-83 15-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 1.4E-17 4.6E-22 128.7 3.5 59 46-105 10-68 (73)
13 2roh_A RTBP1, telomere binding 99.7 1E-16 3.5E-21 135.1 8.2 76 2-80 29-114 (122)
14 1gvd_A MYB proto-oncogene prot 99.7 1E-16 3.5E-21 115.4 5.9 51 3-56 2-52 (52)
15 2d9a_A B-MYB, MYB-related prot 99.6 1.7E-16 5.9E-21 117.5 6.4 54 2-58 6-59 (60)
16 1guu_A C-MYB, MYB proto-oncoge 99.6 1.6E-16 5.3E-21 114.4 5.4 51 3-56 2-52 (52)
17 2din_A Cell division cycle 5-l 99.6 3.7E-16 1.3E-20 117.9 5.9 60 51-111 1-60 (66)
18 1ity_A TRF1; helix-turn-helix, 99.6 4.8E-16 1.6E-20 118.4 5.9 61 2-63 8-68 (69)
19 3sjm_A Telomeric repeat-bindin 99.6 4E-16 1.4E-20 117.5 5.4 56 2-58 9-64 (64)
20 2cu7_A KIAA1915 protein; nucle 99.6 1.7E-15 5.8E-20 116.3 5.5 58 53-110 3-60 (72)
21 1x41_A Transcriptional adaptor 99.5 5.4E-15 1.9E-19 109.7 6.2 52 3-57 7-58 (60)
22 2d9a_A B-MYB, MYB-related prot 99.5 3.4E-15 1.2E-19 110.5 4.6 54 54-107 3-57 (60)
23 1guu_A C-MYB, MYB proto-oncoge 99.5 5.6E-15 1.9E-19 106.2 5.3 50 57-106 1-51 (52)
24 1w0t_A Telomeric repeat bindin 99.5 6.1E-15 2.1E-19 106.6 5.4 51 3-54 1-51 (53)
25 1w0t_A Telomeric repeat bindin 99.5 1.4E-14 4.8E-19 104.7 5.4 49 58-106 1-52 (53)
26 1gvd_A MYB proto-oncogene prot 99.5 1E-14 3.4E-19 104.9 4.6 49 57-105 1-50 (52)
27 1x41_A Transcriptional adaptor 99.5 2.1E-14 7.2E-19 106.5 5.1 53 54-106 3-56 (60)
28 2dim_A Cell division cycle 5-l 99.5 1.4E-14 4.8E-19 110.5 3.9 57 54-110 4-61 (70)
29 2elk_A SPCC24B10.08C protein; 99.5 4E-14 1.4E-18 104.3 5.7 48 4-53 9-56 (58)
30 1ity_A TRF1; helix-turn-helix, 99.5 5.4E-14 1.8E-18 107.0 6.5 57 52-108 3-62 (69)
31 2yum_A ZZZ3 protein, zinc fing 99.4 4E-14 1.4E-18 109.3 4.1 56 3-61 7-67 (75)
32 2din_A Cell division cycle 5-l 99.4 1.8E-14 6.2E-19 108.6 2.1 53 3-60 8-60 (66)
33 2yum_A ZZZ3 protein, zinc fing 99.4 5.4E-14 1.8E-18 108.5 4.4 57 54-110 3-65 (75)
34 3sjm_A Telomeric repeat-bindin 99.4 1.6E-13 5.3E-18 103.3 6.0 51 57-107 9-62 (64)
35 2elk_A SPCC24B10.08C protein; 99.4 1.3E-13 4.3E-18 101.7 5.3 51 54-104 4-56 (58)
36 2ltp_A Nuclear receptor corepr 99.1 2E-14 6.9E-19 114.8 0.0 57 51-107 8-64 (89)
37 2aje_A Telomere repeat-binding 99.4 2.5E-13 8.7E-18 111.6 5.7 78 2-79 11-95 (105)
38 2cu7_A KIAA1915 protein; nucle 99.4 1.8E-13 6E-18 105.0 4.0 53 3-59 8-60 (72)
39 2ckx_A NGTRF1, telomere bindin 99.4 1.3E-12 4.4E-17 103.2 7.5 69 5-76 1-79 (83)
40 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.3E-12 7.8E-17 99.4 5.4 52 55-106 14-69 (73)
41 2yus_A SWI/SNF-related matrix- 99.3 5.1E-12 1.8E-16 98.8 6.5 46 3-52 17-62 (79)
42 3zqc_A MYB3; transcription-DNA 99.3 2.5E-12 8.5E-17 109.2 4.8 78 3-88 53-130 (131)
43 2ckx_A NGTRF1, telomere bindin 99.2 1.8E-11 6E-16 96.7 8.5 71 60-132 1-76 (83)
44 3osg_A MYB21; transcription-DN 99.2 7.8E-12 2.7E-16 105.5 6.7 54 54-107 6-59 (126)
45 2llk_A Cyclin-D-binding MYB-li 99.2 1.1E-11 3.8E-16 95.5 6.3 51 3-59 22-72 (73)
46 2yus_A SWI/SNF-related matrix- 99.2 3.8E-12 1.3E-16 99.6 3.6 48 56-103 15-62 (79)
47 1gv2_A C-MYB, MYB proto-oncoge 99.2 9.7E-12 3.3E-16 101.3 5.5 51 56-106 1-52 (105)
48 2aje_A Telomere repeat-binding 99.2 3.3E-11 1.1E-15 99.0 7.7 76 54-131 8-88 (105)
49 2juh_A Telomere binding protei 99.2 3.9E-11 1.3E-15 100.9 8.0 77 53-131 11-92 (121)
50 1x58_A Hypothetical protein 49 99.1 3.7E-11 1.3E-15 89.4 5.4 51 57-107 6-59 (62)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.5E-11 5.1E-16 94.8 3.3 49 3-54 17-68 (73)
52 2k9n_A MYB24; R2R3 domain, DNA 99.1 3.3E-11 1.1E-15 98.8 5.5 49 59-107 1-50 (107)
53 2ltp_A Nuclear receptor corepr 98.7 4.9E-12 1.7E-16 100.9 0.0 49 3-55 15-63 (89)
54 2cjj_A Radialis; plant develop 99.1 1.8E-10 6.2E-15 92.7 6.7 52 58-109 7-62 (93)
55 2roh_A RTBP1, telomere binding 99.1 3.1E-10 1.1E-14 95.5 7.8 54 55-108 27-85 (122)
56 1ign_A Protein (RAP1); RAP1,ye 99.0 9.5E-11 3.2E-15 108.4 4.1 55 55-109 4-64 (246)
57 2cjj_A Radialis; plant develop 98.9 5.7E-10 2E-14 89.8 4.5 47 4-53 8-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.8 4.7E-09 1.6E-13 77.9 4.9 48 58-105 11-58 (61)
59 1x58_A Hypothetical protein 49 98.8 7.8E-09 2.7E-13 76.9 5.9 52 2-54 6-57 (62)
60 3hm5_A DNA methyltransferase 1 98.8 1E-08 3.5E-13 82.3 6.5 65 43-111 18-87 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 1.4E-08 4.9E-13 75.2 5.6 47 3-53 11-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.7E-08 9.1E-13 76.4 5.4 51 56-107 5-59 (72)
63 2iw5_B Protein corest, REST co 98.5 5.8E-08 2E-12 89.1 4.7 49 58-106 132-180 (235)
64 1fex_A TRF2-interacting telome 98.4 1.1E-07 3.9E-12 70.1 3.7 48 4-54 2-58 (59)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 1.7E-07 5.9E-12 71.8 4.8 48 3-54 7-57 (72)
66 2iw5_B Protein corest, REST co 98.4 2.9E-07 9.9E-12 84.5 6.0 49 2-54 131-179 (235)
67 1wgx_A KIAA1903 protein; MYB D 98.3 5.8E-07 2E-11 69.0 5.7 52 1-55 5-59 (73)
68 2xag_B REST corepressor 1; ami 98.3 1.9E-07 6.4E-12 94.5 3.5 46 60-105 381-426 (482)
69 1wgx_A KIAA1903 protein; MYB D 98.2 9.2E-07 3.2E-11 67.9 4.4 48 59-106 8-59 (73)
70 1fex_A TRF2-interacting telome 98.2 1.4E-06 4.7E-11 64.3 4.6 47 59-105 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.1 1.2E-05 4.1E-10 77.2 9.7 103 5-110 111-279 (304)
72 2yqk_A Arginine-glutamic acid 97.8 2.8E-05 9.7E-10 57.8 6.1 51 55-105 5-56 (63)
73 1ug2_A 2610100B20RIK gene prod 97.8 2.9E-05 9.9E-10 61.6 5.3 51 61-111 35-88 (95)
74 4eef_G F-HB80.4, designed hema 97.6 1.4E-05 4.8E-10 61.1 1.5 44 59-102 20-67 (74)
75 2lr8_A CAsp8-associated protei 96.8 8.6E-06 3E-10 61.3 0.0 47 61-108 16-65 (70)
76 2xag_B REST corepressor 1; ami 97.6 5.7E-05 1.9E-09 76.5 5.9 47 3-53 379-425 (482)
77 4iej_A DNA methyltransferase 1 97.6 0.00015 5E-09 58.0 6.6 61 47-111 22-87 (93)
78 4eef_G F-HB80.4, designed hema 97.5 2.6E-05 8.8E-10 59.7 1.7 43 5-50 21-66 (74)
79 2yqk_A Arginine-glutamic acid 97.5 0.00011 3.8E-09 54.5 5.1 46 3-52 8-54 (63)
80 2ebi_A DNA binding protein GT- 97.4 3.6E-05 1.2E-09 60.2 1.7 52 2-53 2-63 (86)
81 2crg_A Metastasis associated p 97.3 0.00033 1.1E-08 53.1 5.6 47 59-105 8-55 (70)
82 3hm5_A DNA methyltransferase 1 97.3 0.00029 9.8E-09 56.4 5.0 48 5-53 31-80 (93)
83 4a69_C Nuclear receptor corepr 97.3 0.00032 1.1E-08 56.2 5.1 44 4-51 43-86 (94)
84 4a69_C Nuclear receptor corepr 97.2 0.00028 9.6E-09 56.5 4.7 46 59-104 43-88 (94)
85 2crg_A Metastasis associated p 97.2 0.00045 1.5E-08 52.3 5.5 44 4-51 8-52 (70)
86 2ebi_A DNA binding protein GT- 97.1 0.00039 1.3E-08 54.3 4.1 53 59-111 4-70 (86)
87 1ug2_A 2610100B20RIK gene prod 96.7 0.0033 1.1E-07 49.8 6.4 43 6-51 35-79 (95)
88 2y9y_A Imitation switch protei 96.6 0.0078 2.7E-07 59.1 9.8 104 5-111 124-296 (374)
89 4b4c_A Chromodomain-helicase-D 96.4 0.012 4E-07 52.8 9.2 103 3-108 6-198 (211)
90 2lr8_A CAsp8-associated protei 94.2 0.0034 1.2E-07 47.2 0.0 44 6-53 16-61 (70)
91 4iej_A DNA methyltransferase 1 94.0 0.08 2.7E-06 42.2 5.4 48 5-53 31-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 93.9 0.13 4.5E-06 38.2 6.0 50 2-52 5-56 (64)
93 1irz_A ARR10-B; helix-turn-hel 91.4 0.45 1.5E-05 35.3 5.9 50 58-107 6-60 (64)
94 1ofc_X ISWI protein; nuclear p 91.0 0.32 1.1E-05 46.5 6.1 48 60-107 111-159 (304)
95 2xb0_X Chromo domain-containin 89.0 0.25 8.7E-06 46.4 3.6 27 6-32 170-196 (270)
96 4b4c_A Chromodomain-helicase-D 83.6 1.2 4.1E-05 39.4 4.9 51 58-108 6-61 (211)
97 3o0z_A RHO-associated protein 82.0 10 0.00035 33.0 10.0 89 229-317 42-138 (168)
98 3oja_A Leucine-rich immune mol 79.1 6.8 0.00023 38.6 9.0 70 238-311 370-449 (487)
99 3oja_A Leucine-rich immune mol 70.9 31 0.0011 33.8 11.4 61 261-323 422-485 (487)
100 3v6i_B V-type ATP synthase, su 70.5 20 0.00068 28.7 7.9 46 261-307 18-63 (105)
101 2y9y_A Imitation switch protei 67.4 5.6 0.00019 39.0 4.9 48 3-50 227-286 (374)
102 2xb0_X Chromo domain-containin 66.3 10 0.00034 35.5 6.3 48 59-106 3-55 (270)
103 3oja_B Anopheles plasmodium-re 64.6 39 0.0013 33.7 10.9 17 305-321 545-561 (597)
104 1d7m_A Cortexillin I; coiled-c 61.1 58 0.002 25.5 10.4 48 278-327 49-97 (101)
105 3u59_A Tropomyosin beta chain; 59.5 22 0.00077 27.9 6.4 23 277-299 4-26 (101)
106 3u1c_A Tropomyosin alpha-1 cha 58.9 23 0.0008 27.9 6.4 23 277-299 4-26 (101)
107 2dpr_A CON-T(K7GLA); conantoxi 54.5 6.8 0.00023 23.2 1.8 19 299-318 2-20 (26)
108 3lay_A Zinc resistance-associa 51.9 18 0.00061 31.6 5.0 30 263-292 66-95 (175)
109 2z5i_I TM, tropomyosin alpha-1 51.1 15 0.00052 24.5 3.3 24 276-299 4-27 (40)
110 2li6_A SWI/SNF chromatin-remod 49.2 11 0.00039 30.3 3.1 39 14-55 53-98 (116)
111 4i0x_A ESAT-6-like protein MAB 48.5 81 0.0028 23.7 7.8 64 276-339 4-67 (94)
112 2efk_A CDC42-interacting prote 43.6 1.8E+02 0.0061 26.0 11.3 82 229-310 96-196 (301)
113 2jxj_A Histone demethylase jar 43.0 16 0.00055 28.2 3.0 42 14-55 40-89 (96)
114 2o8x_A Probable RNA polymerase 42.2 25 0.00086 24.3 3.7 45 62-108 16-60 (70)
115 1ig6_A MRF-2, modulator recogn 41.6 23 0.00077 28.0 3.7 42 14-55 37-87 (107)
116 2y39_A Nickel and cobalt resis 41.5 26 0.00089 28.8 4.0 41 287-327 21-61 (118)
117 2efl_A Formin-binding protein 40.9 2E+02 0.0067 25.7 14.3 37 229-265 103-139 (305)
118 2li6_A SWI/SNF chromatin-remod 40.0 22 0.00074 28.7 3.4 40 69-108 53-100 (116)
119 2rq5_A Protein jumonji; develo 39.7 27 0.00093 28.6 4.0 58 14-74 46-112 (121)
120 2f42_A STIP1 homology and U-bo 39.0 59 0.002 28.3 6.3 59 270-338 31-94 (179)
121 3hfe_A Potassium voltage-gated 38.6 12 0.00042 23.5 1.3 12 255-266 9-20 (31)
122 3q8t_A Beclin-1; autophagy, AT 36.8 1.5E+02 0.005 23.1 9.2 62 276-337 5-75 (96)
123 1ku3_A Sigma factor SIGA; heli 36.6 35 0.0012 24.3 3.7 45 62-108 11-59 (73)
124 2jrz_A Histone demethylase jar 36.3 26 0.0009 28.2 3.3 42 14-55 44-93 (117)
125 1u78_A TC3 transposase, transp 34.8 1.6E+02 0.0054 22.8 11.2 93 1-100 1-100 (141)
126 2b5u_A Colicin E3; high resolu 33.6 3E+02 0.01 27.9 10.9 120 176-309 224-358 (551)
127 3i4p_A Transcriptional regulat 33.4 31 0.001 28.8 3.4 46 10-59 3-48 (162)
128 3mq7_A Bone marrow stromal ant 33.4 90 0.0031 25.6 5.9 49 258-315 55-103 (121)
129 1c20_A DEAD ringer protein; DN 32.9 34 0.0012 27.9 3.5 42 14-55 56-106 (128)
130 2lm1_A Lysine-specific demethy 32.3 48 0.0016 26.0 4.2 41 68-108 47-99 (107)
131 3vkg_A Dynein heavy chain, cyt 32.3 3E+02 0.01 34.3 12.6 49 235-285 1938-1986(3245)
132 2p7v_B Sigma-70, RNA polymeras 32.1 38 0.0013 23.7 3.3 42 66-108 9-54 (68)
133 1jnm_A Proto-oncogene C-JUN; B 31.5 95 0.0033 22.0 5.3 38 272-310 19-56 (62)
134 2lm1_A Lysine-specific demethy 30.7 31 0.001 27.1 2.8 42 14-55 48-97 (107)
135 4dnd_A Syntaxin-10, SYN10; str 30.5 1.8E+02 0.0061 23.9 7.6 38 253-290 78-127 (130)
136 2b9c_A Striated-muscle alpha t 30.1 1.4E+02 0.0048 25.0 7.0 52 253-309 77-141 (147)
137 1dh3_A Transcription factor CR 29.8 1.4E+02 0.0048 20.8 6.5 41 258-298 3-45 (55)
138 3cz6_A DNA-binding protein RAP 29.7 40 0.0014 29.2 3.5 28 44-71 98-126 (168)
139 2eqy_A RBP2 like, jumonji, at 28.9 31 0.001 28.1 2.5 42 14-55 46-95 (122)
140 2kk0_A AT-rich interactive dom 28.8 41 0.0014 28.1 3.4 42 14-55 68-118 (145)
141 3fav_A ESAT-6-like protein ESX 28.4 1.4E+02 0.0047 22.4 6.2 60 280-339 15-74 (101)
142 2cxy_A BAF250B subunit, HBAF25 28.4 55 0.0019 26.5 4.0 42 14-55 55-104 (125)
143 3hug_A RNA polymerase sigma fa 28.3 62 0.0021 24.0 4.1 44 65-109 40-83 (92)
144 3lay_A Zinc resistance-associa 27.6 2.6E+02 0.009 24.1 8.5 6 283-288 93-98 (175)
145 3s9g_A Protein hexim1; cyclin 27.4 1.5E+02 0.005 23.6 6.0 53 228-292 30-82 (104)
146 3f1i_H Hepatocyte growth facto 26.6 1.1E+02 0.0039 24.1 5.3 38 273-314 60-97 (98)
147 2jrz_A Histone demethylase jar 26.6 45 0.0015 26.8 3.2 41 68-108 43-95 (117)
148 1jad_A PLC-beta, phospholipase 26.3 1.2E+02 0.0042 27.9 6.3 24 286-309 207-230 (251)
149 1x3u_A Transcriptional regulat 26.2 83 0.0028 22.2 4.3 43 62-107 17-59 (79)
150 3ulq_B Transcriptional regulat 26.2 90 0.0031 23.5 4.7 46 59-107 27-72 (90)
151 4fye_A SIDF, inhibitor of grow 26.1 1.6E+02 0.0054 28.9 7.3 67 250-316 514-593 (761)
152 2p1m_A SKP1-like protein 1A; F 25.7 69 0.0024 26.9 4.3 35 28-72 119-153 (160)
153 2eqy_A RBP2 like, jumonji, at 25.3 59 0.002 26.3 3.6 41 68-108 45-97 (122)
154 2cxy_A BAF250B subunit, HBAF25 25.0 1.1E+02 0.0039 24.6 5.4 42 68-109 54-107 (125)
155 2xnx_M M protein, M1-BC1; cell 24.4 1.2E+02 0.0041 25.7 5.4 9 307-315 118-126 (146)
156 1kkx_A Transcription regulator 24.2 23 0.00079 29.0 1.0 39 14-55 52-97 (123)
157 1ic2_A Tropomyosin alpha chain 23.8 1.1E+02 0.0039 22.7 4.8 20 280-299 4-23 (81)
158 4dbg_B Ring finger protein 31; 23.1 72 0.0025 27.5 3.9 35 241-283 78-112 (162)
159 2q1z_A RPOE, ECF SIGE; ECF sig 23.0 1E+02 0.0035 25.1 4.9 32 76-108 149-180 (184)
160 3mtu_A Tropomyosin alpha-1 cha 22.5 79 0.0027 23.6 3.6 25 276-300 3-27 (75)
161 1kkx_A Transcription regulator 22.4 52 0.0018 26.8 2.8 41 69-109 52-100 (123)
162 2p2u_A HOST-nuclease inhibitor 22.3 2E+02 0.0069 24.5 6.7 53 278-331 26-79 (171)
163 2dgc_A Protein (GCN4); basic d 21.3 1.2E+02 0.0041 21.7 4.3 21 273-293 28-48 (63)
164 3c57_A Two component transcrip 21.3 96 0.0033 23.3 4.0 45 61-108 27-71 (95)
165 2rq5_A Protein jumonji; develo 20.6 71 0.0024 26.0 3.2 40 69-108 46-98 (121)
166 2e1c_A Putative HTH-type trans 20.1 1.1E+02 0.0037 25.8 4.5 45 10-58 27-71 (171)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=9.7e-33 Score=227.98 Aligned_cols=104 Identities=30% Similarity=0.640 Sum_probs=100.4
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018763 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK 83 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~ 83 (350)
||+||+|||++|+.+|.+||..+|..||..|+ +||+.||++||.++|+|++++|+||+|||.+|+++|.+||++|..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~ 77 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI---TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNK 77 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT---TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC---CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHH
Confidence 68999999999999999999889999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763 84 IAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 84 IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
||..|||||+++|++||+.++++..+.
T Consensus 78 Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 78 ISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999999886544
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=2.7e-32 Score=224.03 Aligned_cols=102 Identities=35% Similarity=0.756 Sum_probs=97.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|++++++||+|||.+|++++.+||++|.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc---CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 579999999999999999999889999999998 89999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 83 KIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 83 ~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
.||..|||||+++|++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=3.2e-32 Score=232.47 Aligned_cols=114 Identities=33% Similarity=0.621 Sum_probs=105.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018763 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK 83 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~ 83 (350)
||+||+|||++|+.+|.+||.++|..||..|+ +|++.||++||.++|+|++++|+||.|||.+|+++|.+||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 78 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP---NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSV 78 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT---TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC---CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHH
Confidence 79999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCC
Q 018763 84 IAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDP 120 (350)
Q Consensus 84 IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p 120 (350)
||..|||||+++|++||+.++++.............|
T Consensus 79 Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 79 IAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp HTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 9999999999999999999999887655444443333
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=2e-31 Score=226.16 Aligned_cols=102 Identities=34% Similarity=0.701 Sum_probs=98.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKW 81 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W 81 (350)
.+||+||+|||++|+++|.+||. +|..||..|+ +|++.||++||.++|+|++++|+||+|||.+|+++|.+||++|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP---NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT---TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC---CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 47899999999999999999996 9999999999 8999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 82 KKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 82 ~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
..||..|||||+++|++||..++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998874
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=7.5e-31 Score=222.90 Aligned_cols=102 Identities=35% Similarity=0.743 Sum_probs=98.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~ 102 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 102 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS---SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc---CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 579999999999999999999889999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 83 KIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 83 ~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
.||+.|||||+++|++||+.+++++
T Consensus 103 ~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 103 EIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.1e-28 Score=216.67 Aligned_cols=102 Identities=35% Similarity=0.756 Sum_probs=98.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
++++||+|||++|+.+|.+||..+|..||..|+ +||+.||++||.++|+|.+++++||++||.+|++++.+||++|+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~ 133 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 133 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST---TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC---CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHH
Confidence 579999999999999999999888999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 83 KIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 83 ~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
.||+.|||||+++|++||+.+++++
T Consensus 134 ~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 134 EIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=2.3e-28 Score=214.61 Aligned_cols=102 Identities=33% Similarity=0.672 Sum_probs=61.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGN-KW 81 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~-~W 81 (350)
++++||+|||++|+.+|.+||.++|..||..|+ +|++.||++||.++|+|++++++||+|||.+|+++|..||. +|
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 578999999999999999999889999999999 89999999999999999999999999999999999999996 69
Q ss_pred hhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 82 KKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 82 ~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
..||..|||||+.||++||.+++...
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999987643
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-21 Score=145.72 Aligned_cols=63 Identities=33% Similarity=0.715 Sum_probs=60.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHH
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQ 67 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED 67 (350)
.++++||+|||++|+++|.+||.++|..||..|+ +||++||++||.++|+|.+++++||+|||
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~---~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST---TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc---CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4789999999999999999999889999999999 89999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.78 E-value=8.3e-20 Score=154.74 Aligned_cols=75 Identities=31% Similarity=0.605 Sum_probs=51.0
Q ss_pred hhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 30 VSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 30 IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
||+.|+ +||+.||++||.++|+|++++|+||+|||.+|+++|..||. +|..||..|||||+.||++||..++...
T Consensus 1 Ia~~~~---~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 1 MEAVIK---NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ------------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred CccccC---CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 788898 89999999999999999999999999999999999999996 6999999999999999999999887643
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=4.1e-17 Score=150.80 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCC-----ChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC-------------------
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPK-----EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK------------------- 58 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~-----~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~------------------- 58 (350)
.|++||+|||+.|+++|.+||.. .|..||+.|+ |||+.||++||+++|.+.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp---GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP---NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST---TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC---CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 47899999999999999999854 2999999999 89999999999999999886
Q ss_pred ----------CCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 018763 59 ----------KGSLTDEEQHLVIHLQAK-H--------------------------------GN---------------- 79 (350)
Q Consensus 59 ----------kg~WT~EED~~Li~lv~~-~--------------------------------G~---------------- 79 (350)
+..||.+||..|+..+.+ | |.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999998877 2 11
Q ss_pred ---------chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 80 ---------KWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 80 ---------~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
.|..||+.+|+||.+++|+||..+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999775
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=2.5e-17 Score=138.63 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC-CCCChhhhhhhhhhccC-----CCCCCC-CCCHHHHHHHHHHH
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP-LNRDAKSCLERWKNYLK-----PGIKKG-SLTDEEQHLVIHLQ 74 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~-~~Rt~~qCr~Rw~n~L~-----p~i~kg-~WT~EED~~Li~lv 74 (350)
++|++||+|||+.|+++|.+||.++|..|+..+... .+||..||++||+|+++ |.+++| +|+++++.+|+.++
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h 94 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 94 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 678999999999999999999988999999986210 18999999999999998 999999 89999999999999
Q ss_pred HHhCCchhh
Q 018763 75 AKHGNKWKK 83 (350)
Q Consensus 75 ~~~G~~W~~ 83 (350)
..+||+|..
T Consensus 95 ~~~gn~~~~ 103 (121)
T 2juh_A 95 AYWSQQQGK 103 (121)
T ss_dssp HHHHHHHCC
T ss_pred HHHccchhc
Confidence 999999987
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=128.70 Aligned_cols=59 Identities=27% Similarity=0.392 Sum_probs=47.9
Q ss_pred hhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763 46 LERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 46 r~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
--||.|+|+|++++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 9999999999997543
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=1e-16 Score=135.05 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=71.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHh----CCCCCCChhhhhhhhhhcc-----CCCCCCCCCCHHH-HHHHH
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRM----NTPLNRDAKSCLERWKNYL-----KPGIKKGSLTDEE-QHLVI 71 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~~~Rt~~qCr~Rw~n~L-----~p~i~kg~WT~EE-D~~Li 71 (350)
+++++||+|||+.|+++|++||.++|..|+..+ + +||..||++||+|++ +|.+++|.|+++| +.+|+
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~---~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH---HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC---CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC---CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 578999999999999999999988999999975 5 899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCc
Q 018763 72 HLQAKHGNK 80 (350)
Q Consensus 72 ~lv~~~G~~ 80 (350)
.++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=1e-16 Score=115.41 Aligned_cols=51 Identities=41% Similarity=0.860 Sum_probs=48.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG 56 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~ 56 (350)
+|++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK---GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST---TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC---CCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999878999999998 899999999999999985
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.7e-16 Score=117.50 Aligned_cols=54 Identities=33% Similarity=0.743 Sum_probs=51.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK 58 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~ 58 (350)
.++++||+|||++|+++|.+||.++|..||..|+ +||+.||++||.++|+|+++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP---NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS---SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc---CCCHHHHHHHHHHHcCCccC
Confidence 3689999999999999999999889999999999 89999999999999999876
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=1.6e-16 Score=114.40 Aligned_cols=51 Identities=33% Similarity=0.784 Sum_probs=48.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPG 56 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~ 56 (350)
++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP---NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST---TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC---CCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999779999999999 899999999999999985
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=117.94 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=56.5
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763 51 NYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 51 n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
.+|+|.+++++||.|||.+|++++..||++|..||. ++|||++||++||+.++++..+..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 889999999999999999987654
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=4.8e-16 Score=118.36 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=55.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCC
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLT 63 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT 63 (350)
+++++||+|||++|+++|.+||.++|..||..|+.. +||+.||++||.++|+|++.++..+
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~-~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFN-NRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcC-CCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 678999999999999999999988999999999721 6999999999999999999988754
No 19
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=4e-16 Score=117.54 Aligned_cols=56 Identities=29% Similarity=0.652 Sum_probs=50.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK 58 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~ 58 (350)
.||++||+|||++|+++|.+||.++|..||+.++. .+||+.||++||+|+++|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~-~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF-VNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCC-CCCCHHHHHHHHHHHhccCCC
Confidence 58899999999999999999999899999998641 179999999999999998874
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=1.7e-15 Score=116.30 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763 53 LKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 53 L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
++|.+++++||.|||.+|++++..||++|..||.+|||||++||++||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987654
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.4e-15 Score=109.65 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=48.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i 57 (350)
.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|.++.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~---~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC---TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT---TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC---CCCHHHHHHHHHHHccCCC
Confidence 578999999999999999999889999999999 8999999999999998753
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.4e-15 Score=110.50 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
+|.+++++||+|||.+|+++|.+|| ++|..||..|+|||+.||++||+++++..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999 69999999999999999999999887653
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.54 E-value=5.6e-15 Score=106.20 Aligned_cols=50 Identities=28% Similarity=0.462 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
+++++||+|||.+|+++|.+||. +|..||..|+|||+.||++||++++..
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999998863
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=6.1e-15 Score=106.62 Aligned_cols=51 Identities=35% Similarity=0.583 Sum_probs=46.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
||++||+|||++|+++|.+||.++|..||..|+. .+||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~-~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF-NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-SSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999972 15999999999999875
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=1.4e-14 Score=104.69 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k 106 (350)
++++||+|||.+|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.51 E-value=1e-14 Score=104.94 Aligned_cols=49 Identities=33% Similarity=0.563 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHH
Q 018763 57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
+++++||+|||.+|+++|.+||. +|..||..|+|||+.||++||.+++.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999997 69999999999999999999998875
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.1e-14 Score=106.46 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
.+.+.+++||+|||.+|+++|..|| ++|..||..|+|||+.||++||..++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988753
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=110.46 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
.|.+++++||+|||.+|+++|.+|| ++|..||..|+|||+.||++||+++|....+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4688999999999999999999999 79999999999999999999999998875543
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=4e-14 Score=104.33 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=45.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
+++||+|||++|+++|.+||.++|..||+.|+. +||+.||++||.+++
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~--~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGN--ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCS--SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCC--CCCHHHHHHHHHHHc
Confidence 688999999999999999999999999999983 599999999999875
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.47 E-value=5.4e-14 Score=106.97 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=52.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHHHH
Q 018763 52 YLKPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 52 ~L~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k~~ 108 (350)
..++..++++||+|||.+|+++|.+|| ++|..||..|+ |||+.||++||+++++...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 356778899999999999999999999 69999999999 9999999999999998864
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=109.26 Aligned_cols=56 Identities=27% Similarity=0.513 Sum_probs=51.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhCC-----CChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGP-----KEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGS 61 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~-----~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~ 61 (350)
.++.||+|||++|+++|.+||. .+|..||..|+ +||+.||+.||++||.+.++.|.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~---~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG---NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS---SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999996 78999999999 89999999999999998777664
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-14 Score=108.60 Aligned_cols=53 Identities=23% Similarity=0.509 Sum_probs=48.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg 60 (350)
+++.||+|||++|+++|..||. +|..||+ ++ +||+.||++||.++|+|.++++
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~---gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II---GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH---SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc---CcCHHHHHHHHHHHhChHhcCC
Confidence 6889999999999999999995 8999999 77 7999999999999999876654
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.4e-14 Score=108.50 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHG------NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G------~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
+|++.+++||.|||.+|++++..|| ++|..||.+|+|||+.||++||+.++.+..+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 78999999999999999999999998876543
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.42 E-value=1.6e-13 Score=103.30 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCChhhhHHHHHHHHHHH
Q 018763 57 IKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP--GRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp--gRT~~q~rnRW~~~l~k~ 107 (350)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999 58999999865 999999999999998753
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.3e-13 Score=101.68 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=46.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCChhhhHHHHHHHH
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP-GRTAKRLGKWWEVFK 104 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp-gRT~~q~rnRW~~~l 104 (350)
+..+.+++||++||.+|+++|.+|| ++|..||.+|+ +||+.||++||.++.
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 89999999999 999999999998764
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.11 E-value=2e-14 Score=114.84 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=53.6
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 51 NYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 51 n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
..++|.+++|+||.|||.+|++++..||++|..||..|+|||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357789999999999999999999999999999999999999999999999998874
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.39 E-value=2.5e-13 Score=111.61 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCC-CCCCChhhhhhhhhhcc-----CCCCCCCCCCHHHHHH-HHHHH
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNT-PLNRDAKSCLERWKNYL-----KPGIKKGSLTDEEQHL-VIHLQ 74 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~L-----~p~i~kg~WT~EED~~-Li~lv 74 (350)
+++++||+|||+.|+++|.+||.++|..|+..+.. -.+||..+|++||+|++ +|.+++|.-++.|-.. ++++.
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~ 90 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAH 90 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998899999996520 01899999999999998 7999999888887765 77777
Q ss_pred HHhCC
Q 018763 75 AKHGN 79 (350)
Q Consensus 75 ~~~G~ 79 (350)
..+|+
T Consensus 91 ~~~~~ 95 (105)
T 2aje_A 91 GYWTQ 95 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=1.8e-13 Score=104.99 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=49.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k 59 (350)
++++||+|||++|+++|.+||. +|..||..|+ +||+.||+.||+++|.+.++.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~---~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG---SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS---SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999995 9999999999 899999999999998776554
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=1.3e-12 Score=103.16 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHH----hCCCCCCChhhhhhhhhhcc-----CCCCCCCC-CCHHHHHHHHHHH
Q 018763 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQR----MNTPLNRDAKSCLERWKNYL-----KPGIKKGS-LTDEEQHLVIHLQ 74 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~----l~~~~~Rt~~qCr~Rw~n~L-----~p~i~kg~-WT~EED~~Li~lv 74 (350)
++||+|||+.|+++|++||.++|..|++. ++ +||+.||++||+|++ +|.+++|. ...+.+..++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~---~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~ 77 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD---HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 77 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT---TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC---CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHH
Confidence 57999999999999999998899999996 66 899999999999988 67766664 7777778888776
Q ss_pred HH
Q 018763 75 AK 76 (350)
Q Consensus 75 ~~ 76 (350)
..
T Consensus 78 a~ 79 (83)
T 2ckx_A 78 AY 79 (83)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 40
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=2.3e-12 Score=99.41 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 55 PGIKKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
+.+.+++||.+||.+|++++..|| ++|..||.+|||||.+||++||+.++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999998764
No 41
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=5.1e-12 Score=98.81 Aligned_cols=46 Identities=22% Similarity=0.553 Sum_probs=44.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
.++.||+|||++|+++|.+|| ++|..||+.|+ +||+.||+.||.++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~---~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVG---SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS---SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC---CCCHHHHHHHHHHh
Confidence 368999999999999999999 89999999999 89999999999998
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.27 E-value=2.5e-12 Score=109.21 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
++|.||+|||++|+++|.+|| .+|..||..|+ |||+.||+.||+++|++.+..++|+.+-- ......+..|.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~---gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~~ 124 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP---GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKAA 124 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST---TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC------
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC---CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhhh
Confidence 578999999999999999999 68999999999 89999999999999999999998875421 00111234577
Q ss_pred hhhhcC
Q 018763 83 KIAAEV 88 (350)
Q Consensus 83 ~IA~~l 88 (350)
.|++.|
T Consensus 125 ~i~k~~ 130 (131)
T 3zqc_A 125 DVPKKL 130 (131)
T ss_dssp ------
T ss_pred hcchhc
Confidence 776654
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=1.8e-11 Score=96.66 Aligned_cols=71 Identities=15% Similarity=0.333 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 018763 60 GSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILET 132 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~ilet 132 (350)
++||.|||..|+++|.+||. +|+.|++. |+|||+.+||+||+++++...... ......|++....+.++.-
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p--~~~~~~~~p~~~~~rv~~~ 76 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP--QQRRGEPVPQDLLDRVLAA 76 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG--GGCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCc--ccccCCCCCHHHHHHHHHH
Confidence 47999999999999999997 99999995 899999999999999998664321 1223457776666777653
No 44
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.24 E-value=7.8e-12 Score=105.51 Aligned_cols=54 Identities=31% Similarity=0.556 Sum_probs=50.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
.+..++|+||+|||++|+++|..||.+|..||..|+|||+.||+.||.+++...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence 457889999999999999999999999999999999999999999999988654
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=95.52 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=44.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k 59 (350)
++++||+|||++|+++|.+|| .+|..||+.|+ ||+.||++||+. |......
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~lg----Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG----RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHHT----SCHHHHHHHHHH-CSCCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHhC----CCHHHHHHHHHH-HHHHccC
Confidence 689999999999999999999 46999999993 999999999985 5554443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=3.8e-12 Score=99.58 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018763 56 GIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF 103 (350)
Q Consensus 56 ~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~ 103 (350)
...+++||.|||.+|++++.+||++|..||.+|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999865
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.21 E-value=9.7e-12 Score=101.34 Aligned_cols=51 Identities=33% Similarity=0.543 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 56 GIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 56 ~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
++++|+||+|||.+|+++|..||. +|..||..|||||+.||+.||..++..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence 468999999999999999999996 699999999999999999999998754
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=3.3e-11 Score=99.04 Aligned_cols=76 Identities=14% Similarity=0.296 Sum_probs=61.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHH
Q 018763 54 KPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQ 128 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~ 128 (350)
.+..++++||.|||..|++.|.+||. +|+.|+..+ ++||+.+|++||+++++....... .....|++...+++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~--~~rg~~~P~~~l~r 85 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ--QRRGEPVPQELLNR 85 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTT--TTTCCSCCCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcc--cccCCCCCHHHHHH
Confidence 34667899999999999999999997 999999955 899999999999999986543221 22345777777787
Q ss_pred HHH
Q 018763 129 ILE 131 (350)
Q Consensus 129 ile 131 (350)
+++
T Consensus 86 v~~ 88 (105)
T 2aje_A 86 VLN 88 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=3.9e-11 Score=100.87 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=59.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhH
Q 018763 53 LKPGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYD 127 (350)
Q Consensus 53 L~p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d 127 (350)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+|++||+++++....... .....|......+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~--~krg~~~p~e~~~ 88 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ--QRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCST--TCCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCc--ccCCCCCCHHHHH
Confidence 566788999999999999999999997 99999997 4999999999999999986432211 1112355555555
Q ss_pred HHHH
Q 018763 128 QILE 131 (350)
Q Consensus 128 ~ile 131 (350)
.++.
T Consensus 89 rv~~ 92 (121)
T 2juh_A 89 RVLA 92 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=3.7e-11 Score=89.41 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhh---hcCCCCChhhhHHHHHHHHHHH
Q 018763 57 IKKGSLTDEEQHLVIHLQAKHGNKWKKIA---AEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G~~W~~IA---~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
-++.+||+|||..|++.|++||.+|..|+ .++++||..++++||+++.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 35789999999999999999999999999 5789999999999999998763
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=1.5e-11 Score=94.80 Aligned_cols=49 Identities=18% Similarity=0.541 Sum_probs=44.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763 3 ERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
.++.||++||.+|.++|..|| +.+|..||..|+ |||..||+.||.+++.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp---GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS---SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 467899999999999999999 457999999999 8999999999998765
No 52
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.14 E-value=3.3e-11 Score=98.78 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
+|+||+|||.+|+++|..||. +|..||..|||||+.||+.||.+++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 589999999999999999996 8999999999999999999999988654
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.74 E-value=4.9e-12 Score=100.95 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=45.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p 55 (350)
.+++||+|||++|+++|..||. +|..||..|+ |||+.||+.||+++|..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~---gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG---SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4789999999999999999995 8999999999 89999999999998864
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.07 E-value=1.8e-10 Score=92.67 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
.+++||.|||.+|++++..|| ++|..||..|||||.++|++||+.++.....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999996 6799999999999999999999999887643
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.06 E-value=3.1e-10 Score=95.51 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhc----CCCCChhhhHHHHHHHHHHHH
Q 018763 55 PGIKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAE----VPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~----lpgRT~~q~rnRW~~~l~k~~ 108 (350)
...++++||.|||+.|+++|++||. +|+.|+.. |++||+.+|++||+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3456889999999999999999996 99999985 489999999999999998754
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.03 E-value=9.5e-11 Score=108.42 Aligned_cols=55 Identities=25% Similarity=0.498 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763 55 PGIKKGSLTDEEQHLVIHLQAKHGNK------WKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li~lv~~~G~~------W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
+.+++++||+|||++|+++|.+||++ |..||+.|||||++|||+||+.+|++...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999985 99999999999999999999999988653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.93 E-value=5.7e-10 Score=89.76 Aligned_cols=47 Identities=17% Similarity=0.485 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763 4 RQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
++.||.|||++|.+++.+|| +..|..||..|+ |||..||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp---GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE---GRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST---TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 57899999999999999997 467999999999 899999999999864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=4.7e-09 Score=77.87 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
..++||++|+.++++++..||.+|..||..||+||..+|..+|...++
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999976544
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.78 E-value=7.8e-09 Score=76.87 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=44.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
+.|++||+|||+.|++.|++||. +|..|+...+.-.+||..+..+||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 57899999999999999999995 99999964333238999999999998654
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.77 E-value=1e-08 Score=82.32 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=59.1
Q ss_pred hhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcC-----CCCChhhhHHHHHHHHHHHHHhh
Q 018763 43 KSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 43 ~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
.=+.++|.++|.+ ++||.||++.|++|+.+||.+|..|+..+ ++||..++|+||..+.++.....
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999976 89999999999999999999999999998 58999999999999998876554
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=75.21 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=43.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
..+.||++||+++.+++.+|| .+|..||..|+ +||..||..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~---~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE---RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT---TSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC---CCCHHHHHHHHHHhc
Confidence 457899999999999999999 79999999999 899999999997654
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=2.7e-08 Score=76.36 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 56 GIKKGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 56 ~i~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
..+.+.||.|||.+|.+++..|+ ++|..||..+ |||..+|++||+.+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678899999999999999997 5799999998 999999999999997663
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.52 E-value=5.8e-08 Score=89.14 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
..++||.||+.++++++.+||++|..||+.|++||..||+++|..++++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999876654
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=1.1e-07 Score=70.09 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHHHHHHHHh--------CCCChhhhhH-HhCCCCCCChhhhhhhhhhccC
Q 018763 4 RQRWRAEEDALLRAYVKQY--------GPKEWSFVSQ-RMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~ky--------g~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
|.+||+|||+.|..+|.+| |..-|..+++ .++ ++|..+|++||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~---~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT---QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS---SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC---CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 5456999999 788 8999999999999875
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.44 E-value=1.7e-07 Score=71.83 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=42.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhC---CCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763 3 ERQRWRAEEDALLRAYVKQYG---PKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
+++.||.|||++|..++.+|+ ++.|..||..|+ ||..+|+.||..+..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg----Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG----RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT----SCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 567899999999999999997 356999999985 999999999987654
No 66
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.39 E-value=2.9e-07 Score=84.55 Aligned_cols=49 Identities=24% Similarity=0.516 Sum_probs=45.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
+...+||+||+.++.+++.+|| ++|..||+.|+ +||..||+.+|+++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg---TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG---NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS---SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 3467999999999999999999 79999999999 8999999999998764
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=5.8e-07 Score=69.04 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=45.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763 1 MKERQRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55 (350)
Q Consensus 1 ~kkkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p 55 (350)
|-....||.+||++|..++..|+. ..|..||..|+ +||..+|+.||...+..
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~---gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG---SRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT---TSCHHHHHHHHHHSSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC---CCCHHHHHHHHHHHHhc
Confidence 345578999999999999999974 46999999999 89999999999987653
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.33 E-value=1.9e-07 Score=94.48 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018763 60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
..||.+|-.++++.+.+||.+|..||..+++||..||+++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999875433
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.22 E-value=9.2e-07 Score=67.91 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHG----NKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G----~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
...||.+|+.+|..++..|+ ++|..||..|||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45799999999999999998 4699999999999999999999988544
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.19 E-value=1.4e-06 Score=64.26 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKH--------GNK-WKKIAA-EVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~--------G~~-W~~IA~-~lpgRT~~q~rnRW~~~l~ 105 (350)
+.+||.|||..|++.|..| |+. |..++. .+|++|-.+||+||...++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 444 999999 8999999999999987653
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.07 E-value=1.2e-05 Score=77.20 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=82.0
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhh-------hhhhc-------------------------
Q 018763 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLE-------RWKNY------------------------- 52 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~-------Rw~n~------------------------- 52 (350)
+.||..+...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~---~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE---GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST---TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999998 799877632 22100
Q ss_pred ---------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhh------------cCCCCChhhhHH
Q 018763 53 ---------------L---KPGIKKGSLTDEEQHLVIHLQAKHGN----KWKKIAA------------EVPGRTAKRLGK 98 (350)
Q Consensus 53 ---------------L---~p~i~kg~WT~EED~~Li~lv~~~G~----~W~~IA~------------~lpgRT~~q~rn 98 (350)
| .+..++..||++||..|+-.+.+||- +|..|.. ++..||+.+|..
T Consensus 188 ~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~r 267 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQR 267 (304)
T ss_dssp HHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHH
T ss_pred HHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 01223457999999999999999994 6999962 446799999999
Q ss_pred HHHHHHHHHHHh
Q 018763 99 WWEVFKEKQQRE 110 (350)
Q Consensus 99 RW~~~l~k~~~~ 110 (350)
|.+++++-..+.
T Consensus 268 Rc~tLi~~iekE 279 (304)
T 1ofc_X 268 RCNTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876554
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=2.8e-05 Score=57.76 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763 55 PGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAA-EVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~-~lpgRT~~q~rnRW~~~l~ 105 (350)
|.+....||++|-.+..+.+.+||.+|..|++ .|++||..+|...|...++
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 56777899999999999999999999999999 6899999999988865443
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.77 E-value=2.9e-05 Score=61.61 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018763 61 SLTDEEQHLVIHLQAKHGN---KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~---~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
-||.|||..|+..+++.|. .|..||+.|.+|+.+||++||+.+++-.+...
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999986 79999999999999999999999998876554
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.63 E-value=1.4e-05 Score=61.13 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCChhhhHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHGN----KWKKIAAEVPGRTAKRLGKWWEV 102 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~----~W~~IA~~lpgRT~~q~rnRW~~ 102 (350)
.+.||.+|+++|-.+...|+. +|.+||..|||||..+|+.+|..
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 457999999999999999984 69999999999999999998853
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.76 E-value=8.6e-06 Score=61.29 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 61 SLTDEEQHLVIHLQAKHGN---KWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~---~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.||.|||..|+..+++-|. .|..||..+ +||++||.+||..+++-.+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 5999999999999999997 799999999 9999999999999887543
No 76
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.60 E-value=5.7e-05 Score=76.49 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
...+||.+|-.++.+++.+|| ++|..||..|+ +||..||+.+|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg---TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG---NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS---SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 457999999999999999999 79999999999 799999999998653
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.56 E-value=0.00015 Score=58.02 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=51.9
Q ss_pred hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCC-----CCChhhhHHHHHHHHHHHHHhh
Q 018763 47 ERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVP-----GRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 47 ~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lp-----gRT~~q~rnRW~~~l~k~~~~~ 111 (350)
+-|..+|.. ..||.||.+.|++|++.|+-+|..|+..+. +||-.++|.||..+.++.....
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345566653 689999999999999999999999999773 7999999999999998876553
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.52 E-value=2.6e-05 Score=59.69 Aligned_cols=43 Identities=14% Similarity=0.368 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCCCCCCChhhhhhhhh
Q 018763 5 QRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNTPLNRDAKSCLERWK 50 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~ 50 (350)
..||.+|+++|..++..|+. ..|.+||..|| |||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp---GKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK---GRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC---SSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC---CCCHHHHHHHHH
Confidence 47999999999999999964 36999999999 899999999985
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=54.54 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=40.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhH-HhCCCCCCChhhhhhhhhhc
Q 018763 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQ-RMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
+...||+||-.+..+++.+|| .+|..|++ .|+ +|+..||...|...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~---~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP---NKETGELITFYYYW 54 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT---TSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC---CCcHHHHHHHHhcc
Confidence 346899999999999999999 68999999 488 89999999988653
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.44 E-value=3.6e-05 Score=60.21 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=41.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCC---------CChhhhhHHhCC-CCCCChhhhhhhhhhcc
Q 018763 2 KERQRWRAEEDALLRAYVKQYGP---------KEWSFVSQRMNT-PLNRDAKSCLERWKNYL 53 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~---------~~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~L 53 (350)
++...||.+|-..|+++...+.. .-|..||..|.. +..||+.||+.+|.|..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999976421 159999999842 34799999999998754
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00033 Score=53.07 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCChhhhHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAA-EVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~-~lpgRT~~q~rnRW~~~l~ 105 (350)
...||++|-.+..+.+..||.+|..|++ .|++||..+|...|....+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 55 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT 55 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcC
Confidence 4579999999999999999999999999 5999999999998875433
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.27 E-value=0.00029 Score=56.40 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC--CCCChhhhhhhhhhcc
Q 018763 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP--LNRDAKSCLERWKNYL 53 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~--~~Rt~~qCr~Rw~n~L 53 (350)
..||.||++.|.+++.+|+ -.|..|+.++... .+||..+.++||..+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999 5799999999411 2799999999998754
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.25 E-value=0.00032 Score=56.18 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
...||++|..++.+....|| .+|..|++.|+ +||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~---~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE---RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC---CCCHHHHHHHHhc
Confidence 35799999999999999999 78999999999 8999999998864
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.24 E-value=0.00028 Score=56.49 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFK 104 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l 104 (350)
...||++|..+..+.+..||.+|..|+..||+||..+|-..|...+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 3579999999999999999999999999999999999998876543
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.23 E-value=0.00045 Score=52.32 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhH-HhCCCCCCChhhhhhhhhh
Q 018763 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQ-RMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~~~Rt~~qCr~Rw~n 51 (350)
...||++|-.+..+++.+|| .+|..|+. .|+ +|+..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~---~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLP---WKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS---SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC---CCCHHHHHHHHHh
Confidence 45899999999999999999 68999999 588 8999999998874
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.00039 Score=54.27 Aligned_cols=53 Identities=11% Similarity=0.306 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhh
Q 018763 59 KGSLTDEEQHLVIHLQAKHGN----------KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~----------~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
...||.+|...||+++..+.. .|..||..| -.||+.||+++|.++.+.....+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999976431 499999987 37999999999999999876543
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.0033 Score=49.82 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHHHhCC--CChhhhhHHhCCCCCCChhhhhhhhhh
Q 018763 6 RWRAEEDALLRAYVKQYGP--KEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
-||.|||..+....++.|. .-|..||+.++ +|++.|..+||+.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~---Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG---NKTPVEVSHRFRE 79 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS---SCCHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc---cCCHHHHHHHHHH
Confidence 4999999999999999975 36999999998 8999999999986
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.61 E-value=0.0078 Score=59.11 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=80.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc-------------------------------
Q 018763 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL------------------------------- 53 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L------------------------------- 53 (350)
+.||.-+=..++.++.+||-.+-..||..|.+ ++|...++ +|.+++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~--~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAP--GKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCC--SSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHcc--CCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998899999999962 57776654 332211
Q ss_pred -----------C----------CCC-CCCCCCHHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCChhh
Q 018763 54 -----------K----------PGI-KKGSLTDEEQHLVIHLQAKHG----NKWKKIAAE------------VPGRTAKR 95 (350)
Q Consensus 54 -----------~----------p~i-~kg~WT~EED~~Li~lv~~~G----~~W~~IA~~------------lpgRT~~q 95 (350)
+ ++. ++..||.+||..|+-++.+|| ++|..|-.. +..||+..
T Consensus 201 ~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~E 280 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVE 280 (374)
T ss_dssp HHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHH
T ss_pred HHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 0 111 344699999999999999999 469999432 36799999
Q ss_pred hHHHHHHHHHHHHHhh
Q 018763 96 LGKWWEVFKEKQQREQ 111 (350)
Q Consensus 96 ~rnRW~~~l~k~~~~~ 111 (350)
|..|++.+++-..+..
T Consensus 281 L~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 281 LARRGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876554
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.44 E-value=0.012 Score=52.79 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhC--CCChhhhhHH--hCCCCCCChhhhhhhhh-------hccC-----------------
Q 018763 3 ERQRWRAEEDALLRAYVKQYG--PKEWSFVSQR--MNTPLNRDAKSCLERWK-------NYLK----------------- 54 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg--~~~W~~IA~~--l~~~~~Rt~~qCr~Rw~-------n~L~----------------- 54 (350)
....||..|-..|+.++.+|| ...|..|+.. +. +++......-+. ..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~---~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV---DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT---TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 456899999999999999999 5679999875 33 566555332111 0000
Q ss_pred -----------------------------------------------CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhh
Q 018763 55 -----------------------------------------------PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAA 86 (350)
Q Consensus 55 -----------------------------------------------p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~ 86 (350)
+......||.+||..|+..+.+|| ++|..|-.
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 000122499999999999999999 88999865
Q ss_pred --cC----------CC--CChhhhHHHHHHHHHHHH
Q 018763 87 --EV----------PG--RTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 87 --~l----------pg--RT~~q~rnRW~~~l~k~~ 108 (350)
.+ .. +++..+..|...+++-..
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 21 12 345678999887776543
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.17 E-value=0.0034 Score=47.21 Aligned_cols=44 Identities=16% Similarity=0.585 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHHHHHhCC--CChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018763 6 RWRAEEDALLRAYVKQYGP--KEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
.||.|||..+...+++-|. .-|..||+.++ |++.|+.+||+..+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln----ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLD----KNPNQVSERFQQLM 61 (70)
Confidence 5999999999999999985 25999998885 99999999998754
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.01 E-value=0.08 Score=42.16 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCC--CCCChhhhhhhhhhcc
Q 018763 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTP--LNRDAKSCLERWKNYL 53 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~--~~Rt~~qCr~Rw~n~L 53 (350)
..||.||...|.+++.+|+ -.|..|+.+.... ..||..+..+||..+.
T Consensus 31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999 5699999998521 2699999999998764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.91 E-value=0.13 Score=38.19 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCC--hhhhhHHhCCCCCCChhhhhhhhhhc
Q 018763 2 KERQRWRAEEDALLRAYVKQYGPKE--WSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
|.|-.||+|..+...++|.+.|... +..|.+.|+. .+.|..++..+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v-~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNV-DKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCC-TTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCC-CCCCHHHHHHHHHHH
Confidence 5677999999999999999999332 7899999974 378988888776654
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.40 E-value=0.45 Score=35.28 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hhhhhhcC--CCCChhhhHHHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHGNK---WKKIAAEV--PGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~---W~~IA~~l--pgRT~~q~rnRW~~~l~k~ 107 (350)
.+-.||+|.-...++++..+|.. +..|-+.| +|.|..+|+++.+.+....
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45579999999999999999955 77888865 7899999999988765443
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.95 E-value=0.32 Score=46.51 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 60 GSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
+.||..|...++.++.+||. +|..||..|+|+|...|+.++..+....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 46999999999999999995 6999999999999999999888888765
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.02 E-value=0.25 Score=46.43 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhH
Q 018763 6 RWRAEEDALLRAYVKQYGPKEWSFVSQ 32 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~ 32 (350)
.|+.+||..|...|.+||.++|..|-.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999999999943
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=83.61 E-value=1.2 Score=39.40 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---Cchhhhhh--cCCCCChhhhHHHHHHHHHHHH
Q 018763 58 KKGSLTDEEQHLVIHLQAKHG---NKWKKIAA--EVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G---~~W~~IA~--~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.-..||..|-..|+..+.+|| .+|..|+. .|.++|...|+..+..++..-.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 345799999999999999999 56999986 4789999999998887776543
No 97
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.97 E-value=10 Score=33.04 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHhhhhh---hHHHHHH
Q 018763 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKM--EEIEAKMKALRDEQRATLD---RIEAEYR 303 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~--ee~e~~~~~l~~e~~~~~~---~~e~~y~ 303 (350)
.+..+-..|+||.+--...-.+|..--=.+-.|--||+.||..+.+..- -|.+++|.+|.+|=...-. +++.|-+
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999888999999999999988777543 7889999999988655444 4444433
Q ss_pred ---HHHhhhhchHHHHH
Q 018763 304 ---EQIAGLRRDAEAKE 317 (350)
Q Consensus 304 ---e~~~~l~rdae~ke 317 (350)
|.|+.|......-|
T Consensus 122 ~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 122 EAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56666666555555
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.05 E-value=6.8 Score=38.62 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHHHhhHHHHhhhhhhhhhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHh
Q 018763 238 RELEEGHRAWAAHKKEAAWRLRRVELQLES----------EKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIA 307 (350)
Q Consensus 238 ~elee~~~~~~~~kkea~~rl~~~e~qle~----------e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~ 307 (350)
++||++-.....+..+..=++....+|+|. +-..++..++|++.+++...|+. +.+.+..++++..
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 445 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN----AIRDWDMYQHKET 445 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhhhhHHH
Confidence 455555555554444544555555555443 11334455555555555444443 3333444444444
Q ss_pred hhhc
Q 018763 308 GLRR 311 (350)
Q Consensus 308 ~l~r 311 (350)
.|++
T Consensus 446 ~~~~ 449 (487)
T 3oja_A 446 QLAE 449 (487)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.87 E-value=31 Score=33.77 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhh---chHHHHHHHHHHH
Q 018763 261 VELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLR---RDAEAKEQKLAEQ 323 (350)
Q Consensus 261 ~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~---rdae~ke~k~~e~ 323 (350)
+..++|.|+.+- +.-|+++-..|+.|+| +++.+.+.=.+|-.+++.-+ .||-..||-||+|
T Consensus 422 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 422 MYVEQQSVQNNA-IRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc-hhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 444555555442 2235555556666665 34444444334444443322 2444444444444
No 100
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=70.53 E-value=20 Score=28.73 Aligned_cols=46 Identities=35% Similarity=0.444 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHh
Q 018763 261 VELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIA 307 (350)
Q Consensus 261 ~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~ 307 (350)
|-+|||.=|.. -+.++++.||+.+.+=.|=-+.+..++++||++++
T Consensus 18 L~~~lE~Ar~e-A~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~ 63 (105)
T 3v6i_B 18 LLERLEAAKKE-AEERVKRAEAEAKALLEEAEAKAKALEAQYRERER 63 (105)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543332 24467777777777766666777777777777764
No 101
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=67.38 E-value=5.6 Score=38.95 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCCC---------CCCChhhhhhhhh
Q 018763 3 ERQRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNTP---------LNRDAKSCLERWK 50 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~---------~~Rt~~qCr~Rw~ 50 (350)
+...||.+||.-|+-++.+||. ++|..|-..+... ..||+..+..|-.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~ 286 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGN 286 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 4567999999999999999998 8999996654210 1477777666643
No 102
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=66.34 E-value=10 Score=35.52 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cchhhhhh--cCCCCChhhhHHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHG---NKWKKIAA--EVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G---~~W~~IA~--~lpgRT~~q~rnRW~~~l~k 106 (350)
++.||.-|-..|++.+.+|| .+|..|+. .|+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 57999976 57899999998888876654
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.58 E-value=39 Score=33.73 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=6.6
Q ss_pred HHhhhhchHHHHHHHHH
Q 018763 305 QIAGLRRDAEAKEQKLA 321 (350)
Q Consensus 305 ~~~~l~rdae~ke~k~~ 321 (350)
++..|++.-+...+++.
T Consensus 545 ~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhHHH
Confidence 33344443333333333
No 104
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=61.11 E-value=58 Score=25.52 Aligned_cols=48 Identities=38% Similarity=0.480 Sum_probs=22.7
Q ss_pred HHHHHHHH-HhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 018763 278 EEIEAKMK-ALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAK 327 (350)
Q Consensus 278 ee~e~~~~-~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~ 327 (350)
-+|+|||. +||.=+-.-|-|+|-|-| |+.-..|---=|-||||.=..|
T Consensus 49 ~el~akidd~Lk~l~~EklAkldLE~R--LsKtEKDkAiLELkLaE~~Dek 97 (101)
T 1d7m_A 49 RELEAKLDETLKNLELEKLARMELEAR--LAKTEKDRAILELKLAEAIDEK 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHhhhhh
Confidence 34444442 333333333334443332 4555556666666666654443
No 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.53 E-value=22 Score=27.90 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHH
Q 018763 277 MEEIEAKMKALRDEQRATLDRIE 299 (350)
Q Consensus 277 ~ee~e~~~~~l~~e~~~~~~~~e 299 (350)
|+-|--||.+|+-|--.+++|.|
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae 26 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 106
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.86 E-value=23 Score=27.92 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHH
Q 018763 277 MEEIEAKMKALRDEQRATLDRIE 299 (350)
Q Consensus 277 ~ee~e~~~~~l~~e~~~~~~~~e 299 (350)
|+-|--||.+|+-|--.+++|.|
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 107
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=54.45 E-value=6.8 Score=23.15 Aligned_cols=19 Identities=47% Similarity=0.788 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhchHHHHHH
Q 018763 299 EAEYREQIAGLRRDAEAKEQ 318 (350)
Q Consensus 299 e~~y~e~~~~l~rdae~ke~ 318 (350)
|.||.|-|.+|| +||.|..
T Consensus 2 eeeyqemlenlr-eaevkkn 20 (26)
T 2dpr_A 2 EEEYQEMLENLR-EAEVKKN 20 (26)
T ss_dssp CHHHHHHHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHH-HHHHHhc
Confidence 468999999996 6777643
No 108
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.90 E-value=18 Score=31.63 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 018763 263 LQLESEKACRRREKMEEIEAKMKALRDEQR 292 (350)
Q Consensus 263 ~qle~e~~~~~r~~~ee~e~~~~~l~~e~~ 292 (350)
++|-.|...+-++=+++.-.++.+||++-.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~ 95 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLI 95 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776533
No 109
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=51.05 E-value=15 Score=24.52 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHH
Q 018763 276 KMEEIEAKMKALRDEQRATLDRIE 299 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e 299 (350)
.|+-|--||.+|+-|.-.+++|.|
T Consensus 4 ~MdAIKKKMq~lK~ekd~A~drAe 27 (40)
T 2z5i_I 4 SMDAIKKKMQMLKLDKENALDRAE 27 (40)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 478899999999999999999987
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.23 E-value=11 Score=30.32 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|..|+..|+-+ .+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~---~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQIS---DYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSC---CTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCC---hHHHHHHHHHHHHHH
Confidence 46677777763 4799999999843 378888889888865
No 111
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=48.46 E-value=81 Score=23.75 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018763 276 KMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMG 339 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~~~ 339 (350)
.|..+-+++...-++=...|+.|++.-....++..-+|-..=+-..++|...-.+|...|+.|+
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777888888888888999999999999999999999999999999885
No 112
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=43.59 E-value=1.8e+02 Score=26.01 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHH-----HHHH----HHHHHHHHHHH----------HHHHhHH
Q 018763 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLES-----EKAC----RRREKMEEIEA----------KMKALRD 289 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~-----e~~~----~~r~~~ee~e~----------~~~~l~~ 289 (350)
.+..|-.+.++++..+..+..+-..+.-.|..+...|+- +++| +.|.+.+..++ |+++--+
T Consensus 96 v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~ 175 (301)
T 2efk_A 96 VCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAH 175 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHH
Confidence 356677788888888888887777777777766665542 1222 22333332211 3333333
Q ss_pred HHhhhhhhHHHHHHHHHhhhh
Q 018763 290 EQRATLDRIEAEYREQIAGLR 310 (350)
Q Consensus 290 e~~~~~~~~e~~y~e~~~~l~ 310 (350)
.-...++.-+.+|+-+|..+-
T Consensus 176 ~~~~~~~~a~~~Y~~~v~~~n 196 (301)
T 2efk_A 176 LRSHMAEESKNEYAAQLQRFN 196 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445567778887777663
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=43.02 E-value=16 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCC-hhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRD-AKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt-~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|.+|+..|+-+.+-+ +.+.+..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 45666666642 47999999997532222 45677788887753
No 114
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.20 E-value=25 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 62 LTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 62 WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
++ +.+..++.++-..|-.+..||..+ |-|...|+++....+++-.
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44 445556666667788899999999 7899999988877766654
No 115
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.60 E-value=23 Score=27.99 Aligned_cols=42 Identities=10% Similarity=0.309 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCC--CChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLN--RDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~--Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|.+|+..|+-+.+ -.+.+.+..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776652 479999999974322 2246788888888876
No 116
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=41.53 E-value=26 Score=28.79 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=33.4
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Q 018763 287 LRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAK 327 (350)
Q Consensus 287 l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~ 327 (350)
|=.+|.+.|+.||.+|..+...|+.+-.+--.+|++.=..+
T Consensus 21 Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~ 61 (118)
T 2y39_A 21 LDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN 61 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44678888999999999999999888888888888876533
No 117
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=40.94 E-value=2e+02 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHH
Q 018763 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQL 265 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~ql 265 (350)
.+..|-.++++++..|..+..+-..+.-.+......|
T Consensus 103 v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l 139 (305)
T 2efl_A 103 IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQL 139 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888777777666665655565555444
No 118
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.00 E-value=22 Score=28.65 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=30.7
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 69 LVIHLQAKHGN--------KWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 69 ~Li~lv~~~G~--------~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.|..+|..+|+ .|..|+..|.--.+..+++.|..+|-.--
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 47788888873 69999998744348899999998886643
No 119
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.73 E-value=27 Score=28.56 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=37.8
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCC--ChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHH
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNR--DAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQ 74 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~R--t~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv 74 (350)
+|..+|.+.|. +.|..|+..|+-+.+- .+...+..|.++|.|- ...+++|-..|.+-|
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v 112 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEV 112 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHH
Confidence 34555555542 4699999999743222 2456788899888762 136778877776554
No 120
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=39.02 E-value=59 Score=28.30 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 018763 270 ACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAE-----AKEQKLAEQWSAKHLRLTKFLEQM 338 (350)
Q Consensus 270 ~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae-----~ke~k~~e~w~~~~~~~~~~~~~~ 338 (350)
..+|...+.++.+.+..| |++||..+|+.|..+.+ ....++.+.+..+-..|..++.++
T Consensus 31 e~~r~~~~~~l~~~~~~l----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 94 (179)
T 2f42_A 31 EEKRISQENELHAYLSKL----------ILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQV 94 (179)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777666 55888888887775422 334456667776666777777755
No 121
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=38.59 E-value=12 Score=23.51 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHH
Q 018763 255 AWRLRRVELQLE 266 (350)
Q Consensus 255 ~~rl~~~e~qle 266 (350)
-.||.|||+|+-
T Consensus 9 GaRLnRvE~k~t 20 (31)
T 3hfe_A 9 GARLNRVEDKVT 20 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999998874
No 122
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.84 E-value=1.5e+02 Score=23.06 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHH------HHHHHHHhhhhchHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018763 276 KMEEIEAKMKALRDEQRATLDRIE------AEYREQIAGLRRDAEAKEQKLAEQWSA---KHLRLTKFLEQ 337 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e------~~y~e~~~~l~rdae~ke~k~~e~w~~---~~~~~~~~~~~ 337 (350)
-++.+++.++.|..|+...+..|+ +....+|..|+..++..++.=..-|.- -+..|..|.+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888887665543 466677888888887776666666654 44455555553
No 123
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.56 E-value=35 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 62 LTDEEQHLVIHLQAK----HGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 62 WT~EED~~Li~lv~~----~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.++.| ..++.+.-- .|-.+..||..+ |-|...|+.+....+++-.
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34444 444545443 567899999999 8899999998877776654
No 124
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.27 E-value=26 Score=28.21 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCC-hhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRD-AKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt-~~qCr~Rw~n~L~p 55 (350)
+|..+|.+.|. +.|..|+..|+-+.+-+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 46999999998532212 45677778887754
No 125
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.83 E-value=1.6e+02 Score=22.82 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=56.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC-C-----CCCCCCCCHHHHHHHHHHH
Q 018763 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK-P-----GIKKGSLTDEEQHLVIHLQ 74 (350)
Q Consensus 1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~-p-----~i~kg~WT~EED~~Li~lv 74 (350)
|-+....|.++-..++.++. -| .+-..||..++ .+...++ +|.+... . .......|.+++..|+.+.
T Consensus 1 Mgr~~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg----is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~ 73 (141)
T 1u78_A 1 MPRGSALSDTERAQLDVMKL-LN-VSLHEMSRKIS----RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAA 73 (141)
T ss_dssp -CCSCCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT----CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC----cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHH
Confidence 55667889888887777763 45 57899999997 6655553 3433221 1 1122357888888888773
Q ss_pred HHhCCchhhhhhcCCC-CChhhhHHHH
Q 018763 75 AKHGNKWKKIAAEVPG-RTAKRLGKWW 100 (350)
Q Consensus 75 ~~~G~~W~~IA~~lpg-RT~~q~rnRW 100 (350)
..-+-.-..|+..+.- -+...|.+..
T Consensus 74 ~~~~~s~~~i~~~lg~~~s~~tV~r~l 100 (141)
T 1u78_A 74 SNSCKTARDIRNELQLSASKRTILNVI 100 (141)
T ss_dssp HHCCCCHHHHHHHTTCCSCHHHHHHHH
T ss_pred hCCCCCHHHHHHHHCCCccHHHHHHHH
Confidence 3322334678887721 4666665443
No 126
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.62 E-value=3e+02 Score=27.92 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCCCCCCCC---ccccCCC-------CCC--CCCC---CCCchhhhhHHHHHHHHH
Q 018763 176 RPPSPSVTLSLSPSTVAAAPPIPWLQPERGSDN---TLVLGNM-------PTH--GSVP---ICGENLLVSELMECCREL 240 (350)
Q Consensus 176 ~psSPSVtLSLsPs~~~~~~~~p~~~~~~~~~~---~~~l~~~-------~~~--g~~~---~~~~~~~~~~l~~~~~el 240 (350)
-|--|+.+|+...++++....+|-+-+..+.+. .|..+.. +|. |+-| +.++++...+|-+--.|
T Consensus 224 vPG~ps~~I~V~~~~Pa~q~~pp~v~~~~~~d~~~a~Ft~g~nthDAII~FPe~Sg~ePlYISvs~ilt~~elkqrqee- 302 (551)
T 2b5u_A 224 IPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDE- 302 (551)
T ss_dssp CTTSCCEEEEEESSCCCCCSCCTTEESCSCCSCEECCTTTTTTEEEEEEECCGGGCCCCEEEEEEECCCHHHHHHHHHH-
T ss_pred cCCCCceEEEecCCCccccCCCCCccccCCCCcceeeccccCCccceEEECCCCCCCCceEEEEeecCCHHHHHHHHHH-
Confidence 355677888888776665444444444333222 2222322 221 3334 34555555555443333
Q ss_pred HHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhh
Q 018763 241 EEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGL 309 (350)
Q Consensus 241 ee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l 309 (350)
.-|.+..|+++-=+--.|.| ..+-|..|++.+.-+-.++|-+. +-++-|-+.-+.|
T Consensus 303 --------e~r~~qew~~~hp~~~Aer~-~e~a~ael~~a~k~~a~~~er~~----~t~~~~~~~~~~~ 358 (551)
T 2b5u_A 303 --------ENRRQQEWDATHPVEAAERN-YERARAELNQANEDVARNQERQA----KAVQVYNSRKSEL 358 (551)
T ss_dssp --------HHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred --------HHHHHHHhhhcCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHH
Confidence 23445555554433223333 34455666677666666666443 3345555555555
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.41 E-value=31 Score=28.78 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018763 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k 59 (350)
+-|..|..++++.|.-.|.+||+.++ -+...|+.|..+....++-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg----~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG----LSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT----CCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC----cCHHHHHHHHHHHHHCCCee
Confidence 45788889998888889999999997 89999999998876555443
No 128
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.40 E-value=90 Score=25.55 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHH
Q 018763 258 LRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEA 315 (350)
Q Consensus 258 l~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ 315 (350)
.--|---|+-||+.. ..+++|++.+|+-|-..=..+.. .|-.|||+-+.
T Consensus 55 V~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~a--------e~erlr~~~~~ 103 (121)
T 3mq7_A 55 VMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASA--------EVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhchh
Confidence 334566789999988 66799999999998775333333 33456766553
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.92 E-value=34 Score=27.92 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCC--ChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNR--DAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~R--t~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|..|+..|+-+.+- .+.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777763 4799999999743221 246678888888765
No 130
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=32.28 E-value=48 Score=25.95 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHhC--------CchhhhhhcCCCCC----hhhhHHHHHHHHHHHH
Q 018763 68 HLVIHLQAKHG--------NKWKKIAAEVPGRT----AKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 68 ~~Li~lv~~~G--------~~W~~IA~~lpgRT----~~q~rnRW~~~l~k~~ 108 (350)
-.|...|..+| +.|..|+..|.--. ..++++.|..++-.--
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE 99 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFE 99 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 45777777777 36999999883322 4678888888776543
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.26 E-value=3e+02 Score=34.31 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018763 235 ECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMK 285 (350)
Q Consensus 235 ~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~ 285 (350)
+.=+||++-.....+-.+||.=-|..++. +.+.|.++++.++++++++.
T Consensus 1938 ~l~~~L~~~~~~L~~k~~ea~~~l~~i~~--~~~~ae~~k~~v~~~~~~~~ 1986 (3245)
T 3vkg_A 1938 DLQVSLAQKNRELDVKNEQANQKLKQMVQ--DQQAAEIKQKDARELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666553 34456666666665555544
No 132
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.13 E-value=38 Score=23.68 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHH----HhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 66 EQHLVIHLQA----KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 66 ED~~Li~lv~----~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.+..++.+.- ..|-.+..||..+ |-|...|+++....+++-.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3444444544 3467899999999 8899999998887776653
No 133
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.51 E-value=95 Score=21.97 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhh
Q 018763 272 RRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLR 310 (350)
Q Consensus 272 ~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~ 310 (350)
|+.+.++++|.++..|..+-......|. ..+++++.|+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~-~L~~e~~~Lk 56 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTAN-MLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3456678889998888776555444443 4555565554
No 134
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=30.67 E-value=31 Score=27.12 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCC-CChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLN-RDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~-Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|..|+..|+-+.+ -.+.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667777763 369999999974221 0135667777776643
No 135
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.51 E-value=1.8e+02 Score=23.85 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=25.9
Q ss_pred hhhhhhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHH
Q 018763 253 EAAWRLRRVELQLE------------SEKACRRREKMEEIEAKMKALRDE 290 (350)
Q Consensus 253 ea~~rl~~~e~qle------------~e~~~~~r~~~ee~e~~~~~l~~e 290 (350)
.+.|.|..|+.-.. ..-..+||.=+.+++.+|+.++.+
T Consensus 78 sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 78 SIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777775443 222567788888888888887764
No 136
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=30.12 E-value=1.4e+02 Score=25.04 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=32.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh-------------HHHHHHHHHhhh
Q 018763 253 EAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDR-------------IEAEYREQIAGL 309 (350)
Q Consensus 253 ea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~-------------~e~~y~e~~~~l 309 (350)
|++=+|.-||.-|| |--++.+..|+||+.|-++=...-.. -|..|.+++..|
T Consensus 77 E~~RKl~~~E~dLe-----raeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 77 EVARKLVIIESDLE-----RAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 45577888888888887775443332 256777777665
No 137
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.85 E-value=1.4e+02 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhhhhhhH
Q 018763 258 LRRVELQLESEKACRRRE--KMEEIEAKMKALRDEQRATLDRI 298 (350)
Q Consensus 258 l~~~e~qle~e~~~~~r~--~~ee~e~~~~~l~~e~~~~~~~~ 298 (350)
.+|+..-=||=..+|.|- -++++|.++..|..|-......|
T Consensus 3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554 47999999998887655444433
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=29.71 E-value=40 Score=29.23 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.6
Q ss_pred hhhhhhhhccC-CCCCCCCCCHHHHHHHH
Q 018763 44 SCLERWKNYLK-PGIKKGSLTDEEQHLVI 71 (350)
Q Consensus 44 qCr~Rw~n~L~-p~i~kg~WT~EED~~Li 71 (350)
+..+.|..-.. |....|-||.++|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 44455554444 56778999999998876
No 139
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.90 E-value=31 Score=28.06 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCC-hhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRD-AKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt-~~qCr~Rw~n~L~p 55 (350)
+|..+|.+.|. +.|..|+..|+-+.+-+ +.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777763 47999999998432221 34667777777643
No 140
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.80 E-value=41 Score=28.13 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCC--CChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLN--RDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~--Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|.+|+..|+-+.+ -.+.+.+..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46677777763 369999999974322 1256788889888876
No 141
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=28.43 E-value=1.4e+02 Score=22.44 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018763 280 IEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMG 339 (350)
Q Consensus 280 ~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~~~ 339 (350)
.=+.|.....+=...|+.|++.=....+...-+|-..=+-...+|...-.+|...|+.|+
T Consensus 15 ~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 74 (101)
T 3fav_A 15 EAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555556666766666666888888888888899999999999999999875
No 142
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.40 E-value=55 Score=26.54 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCC-CChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLN-RDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~-Rt~~qCr~Rw~n~L~p 55 (350)
+|..+|.+.|. +.|.+|+..|+-+.. -.+.+.+..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777763 379999999974211 1145677778777753
No 143
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.33 E-value=62 Score=24.01 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763 65 EEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 65 EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
+.+..++.++-..|-.-..||..+ |-|...|+.+....+++-..
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 455566666666788899999999 88999999988877766543
No 144
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.58 E-value=2.6e+02 Score=24.07 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.2
Q ss_pred HHHHhH
Q 018763 283 KMKALR 288 (350)
Q Consensus 283 ~~~~l~ 288 (350)
+|+++|
T Consensus 93 ql~akr 98 (175)
T 3lay_A 93 QLISKR 98 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 145
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.43 E-value=1.5e+02 Score=23.62 Aligned_cols=53 Identities=26% Similarity=0.326 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 018763 228 LLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQR 292 (350)
Q Consensus 228 ~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~ 292 (350)
+.-.+||+-|-+||.-...-- +-+=||+.+ |-..+ -++.|.+++|.-||.|--
T Consensus 30 mSKqELIqEYl~LE~~~s~le----~e~~rlr~~-----~~~~~---~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRME----DENNRLRLE-----SKRLD---ARVRELELELDRLRAENL 82 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----HHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----hccch---hhHHHHHHHHHHHHHHHH
Confidence 455789999999986433210 001122222 11111 357777788887776643
No 146
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=26.63 E-value=1.1e+02 Score=24.13 Aligned_cols=38 Identities=39% Similarity=0.622 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHH
Q 018763 273 RREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAE 314 (350)
Q Consensus 273 ~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae 314 (350)
+|..-|.+.-|+--+||. .++||.+=.||+|+| ||.||
T Consensus 60 ~R~~yE~LQDkL~qi~eA-R~ALdaLR~eH~~Kl---rr~ae 97 (98)
T 3f1i_H 60 RRLYYEGLQDKLAQIRDA-RGALSALREEHREKL---RRAAE 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHhc
Confidence 466677777777777754 567888888887754 56654
No 147
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=26.57 E-value=45 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHhC--------CchhhhhhcCCCCC----hhhhHHHHHHHHHHHH
Q 018763 68 HLVIHLQAKHG--------NKWKKIAAEVPGRT----AKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 68 ~~Li~lv~~~G--------~~W~~IA~~lpgRT----~~q~rnRW~~~l~k~~ 108 (350)
-.|..+|..+| +.|..|+..|.--. ...++..|..+|-.--
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45777788887 36999999883221 4578888888776644
No 148
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=26.33 E-value=1.2e+02 Score=27.88 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=11.9
Q ss_pred HhHHHHhhhhhhHHHHHHHHHhhh
Q 018763 286 ALRDEQRATLDRIEAEYREQIAGL 309 (350)
Q Consensus 286 ~l~~e~~~~~~~~e~~y~e~~~~l 309 (350)
.|-+|+.-.+..+++||.|.+.+|
T Consensus 207 ~l~~e~~k~~~~~~~~~q~~~~~l 230 (251)
T 1jad_A 207 AIQEKEGQLQQEAVAEYEEKLKTL 230 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC
Confidence 334444444455555555555554
No 149
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.20 E-value=83 Score=22.19 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 62 LTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 62 WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
+|+.|- .++.++ ..|-....||..+ |-|...|+.+...++++-
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344444 444555 6677899999999 789999999888777664
No 150
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.20 E-value=90 Score=23.50 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018763 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
....|..|-+.|.-++ .|..-..||..| |-+...|+++...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4468888877766554 788889999999 889999999998887764
No 151
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=26.05 E-value=1.6e+02 Score=28.86 Aligned_cols=67 Identities=30% Similarity=0.575 Sum_probs=46.2
Q ss_pred hhhhhhhh---hhhHHHHHHH-HHHHHHHH-HHHHHHHHHHHhHH----HHhhhhhhHHHHHHHHHhhh----hchHHHH
Q 018763 250 HKKEAAWR---LRRVELQLES-EKACRRRE-KMEEIEAKMKALRD----EQRATLDRIEAEYREQIAGL----RRDAEAK 316 (350)
Q Consensus 250 ~kkea~~r---l~~~e~qle~-e~~~~~r~-~~ee~e~~~~~l~~----e~~~~~~~~e~~y~e~~~~l----~rdae~k 316 (350)
+|.|.-|. |..|.-|.+- ||.-+..| .+=|+-..|.|||. |.+.-+.+-=+|..||++-. .-|-|.|
T Consensus 514 qkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqidalrkayytehkgqinkalqelkeqispviqnketdpetk 593 (761)
T 4fye_A 514 QKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRKAYYTEHKGQINKALQELKEQISPVIQNKETDPETK 593 (761)
T ss_dssp HSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred hccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcChhhcCCCCChhHH
Confidence 34455553 6667777763 66665554 45777788888885 67888888888999998754 4566655
No 152
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.73 E-value=69 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=26.7
Q ss_pred hhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHH
Q 018763 28 SFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIH 72 (350)
Q Consensus 28 ~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~ 72 (350)
..||..+. |+|+.+||.-|. |.. .||+||+..+.+
T Consensus 119 ~~vA~~ik---gkt~eeir~~f~------I~n-d~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK---GKTPEEIRTTFN------IKN-DFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT---TCCHHHHHHHTT------CCC-CCCHHHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHcC------CCC-CCCHHHHHHHHH
Confidence 46777787 899999998873 332 599999987654
No 153
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.28 E-value=59 Score=26.32 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCC--------chhhhhhcCCCCC----hhhhHHHHHHHHHHHH
Q 018763 68 HLVIHLQAKHGN--------KWKKIAAEVPGRT----AKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 68 ~~Li~lv~~~G~--------~W~~IA~~lpgRT----~~q~rnRW~~~l~k~~ 108 (350)
-.|...|..+|+ .|..|+..|.--+ +..+++.|..+|-.--
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE 97 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYN 97 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 357777777773 6999999883221 3567777777766543
No 154
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=24.99 E-value=1.1e+02 Score=24.56 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHhC--------CchhhhhhcCCCCC----hhhhHHHHHHHHHHHHH
Q 018763 68 HLVIHLQAKHG--------NKWKKIAAEVPGRT----AKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 68 ~~Li~lv~~~G--------~~W~~IA~~lpgRT----~~q~rnRW~~~l~k~~~ 109 (350)
-.|..+|..+| +.|..|+..|.--+ ...+++.|..+|-.--.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45777777777 36999999883222 45778888877766543
No 155
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.43 E-value=1.2e+02 Score=25.66 Aligned_cols=9 Identities=56% Similarity=0.822 Sum_probs=0.0
Q ss_pred hhhhchHHH
Q 018763 307 AGLRRDAEA 315 (350)
Q Consensus 307 ~~l~rdae~ 315 (350)
-|||||-++
T Consensus 118 qgLrRDLeA 126 (146)
T 2xnx_M 118 QSLRRDLDA 126 (146)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 478887664
No 156
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=24.25 E-value=23 Score=28.97 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018763 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|..|+..|+-+ .+...+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~---~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQIS---DYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCC---hHHHHHHHHHHHHHH
Confidence 35566666652 3599999999843 277888888877654
No 157
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.82 E-value=1.1e+02 Score=22.71 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHhhhhhhHH
Q 018763 280 IEAKMKALRDEQRATLDRIE 299 (350)
Q Consensus 280 ~e~~~~~l~~e~~~~~~~~e 299 (350)
|--||.+|+-|--.+.++.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~ 23 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAE 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 158
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=23.09 E-value=72 Score=27.52 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=26.6
Q ss_pred HHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018763 241 EEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAK 283 (350)
Q Consensus 241 ee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~ 283 (350)
+|.++||..|+.+. |+. |. +=.+.||.||+|+-++
T Consensus 78 ~EAr~Aw~~~~Gd~-~~A--v~-----~ci~~R~~K~~eL~s~ 112 (162)
T 4dbg_B 78 QEARRAWLDRHGNL-DEA--VE-----ECVRTRRRKVQELQSL 112 (162)
T ss_dssp HHHHHHHHHTTTCH-HHH--HH-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCh-HHH--HH-----HHHHHHHHHHHHHHhc
Confidence 89999999998874 432 22 3457889999998776
No 159
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.96 E-value=1e+02 Score=25.07 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=25.8
Q ss_pred HhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 76 KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 76 ~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
..|-....||..+ |-|...|+++....+++-.
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3466789999999 8899999998887776643
No 160
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.48 E-value=79 Score=23.57 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHH
Q 018763 276 KMEEIEAKMKALRDEQRATLDRIEA 300 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e~ 300 (350)
-|+.|..||++|..|--.++++++.
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~ 27 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQ 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999998888888773
No 161
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=22.44 E-value=52 Score=26.80 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018763 69 LVIHLQAKHGN--------KWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 69 ~Li~lv~~~G~--------~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
.|..+|...|+ .|..|+..|.--.+..+++.|..+|-.--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 46777777773 499999987433388999999988877554
No 162
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=22.30 E-value=2e+02 Score=24.51 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH-HHH
Q 018763 278 EEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKH-LRL 331 (350)
Q Consensus 278 ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~-~~~ 331 (350)
-++..++..+-.+-...+++|...|..+++.|.-+.+.-+.-| .+||.-| ..|
T Consensus 26 a~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l-~~y~e~~r~el 79 (171)
T 2p2u_A 26 ATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGV-ATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHh
Confidence 3444444444445567788999999999999999988887655 5788877 555
No 163
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.35 E-value=1.2e+02 Score=21.75 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhh
Q 018763 273 RREKMEEIEAKMKALRDEQRA 293 (350)
Q Consensus 273 ~r~~~ee~e~~~~~l~~e~~~ 293 (350)
+.+.++++|.++..|..|-..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999988655433
No 164
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.33 E-value=96 Score=23.33 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018763 61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
..|+.|-+.|.- + ..|..-..||..+ |-|...|+++...++++-.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 466666655554 5 7788889999999 8899999998887776643
No 165
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=20.56 E-value=71 Score=26.03 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------CchhhhhhcC--CCC---ChhhhHHHHHHHHHHHH
Q 018763 69 LVIHLQAKHG--------NKWKKIAAEV--PGR---TAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 69 ~Li~lv~~~G--------~~W~~IA~~l--pgR---T~~q~rnRW~~~l~k~~ 108 (350)
.|..+|..+| +.|..|+..| |.- ....+++.|..+|-..-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 5777778887 3699999988 322 24578888887776643
No 166
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.13 E-value=1.1e+02 Score=25.76 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCC
Q 018763 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIK 58 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~ 58 (350)
+-|..|+.++...+...+.+||+.++ -+...|+.|.....+.++-
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg----lS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG----LAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT----SCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC----cCHHHHHHHHHHHHHCCCe
Confidence 45777888888888889999999997 7999999998876555443
Done!