BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018764
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/305 (62%), Positives = 232/305 (76%), Gaps = 1/305 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+ +FY+ TCPN + I+R +Q A SD RIGASLIRLHFHDCFVNGCDASILLD T +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
I SEK A PN NSARGF V+DN+K A+E AC VVSC+D+L +A+E SV+L+GGPSW V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS TAN A AN ++P P SL + F VGLN DLVALSGAHTFGRA+C F
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARCGVF 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
++RL++F+ TG PDPT++ TLL L++LCPQ G+ + + N D+ TPDAFDN YF+NL+
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 267 KGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 326
GLLQSDQELFST G+ T AIV F NQT FF+ F SMI MGN+ PLTG+ GEIRL+C
Sbjct: 241 DGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 327 RRVNG 331
++VNG
Sbjct: 301 KKVNG 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/307 (63%), Positives = 234/307 (76%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLPGP +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 233/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 301 CRVVNSN 307
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 233/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 301 CRVVNSN 307
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 233/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 233/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 233/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG H+FG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 301 CRVVNSN 307
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 232/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L + D++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/305 (62%), Positives = 232/305 (76%), Gaps = 1/305 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVN 330
CR VN
Sbjct: 301 CRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 232/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHF DCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 232/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/305 (62%), Positives = 231/305 (75%), Gaps = 1/305 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVAL G HTFG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVN 330
CR VN
Sbjct: 301 CRVVN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/307 (62%), Positives = 231/307 (75%), Gaps = 1/307 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY+++CPNV+NI+R+ + N SD RI AS++ LHF DCFVNGCDASILLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
+EK A N NSARGF VID MKAAVE AC R VSCAD+LTIAA++SV L+GGPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS A LAN NLP P +L +LK SFRNVGLN DLVALSG HTFG+ QC+F
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
DRLY+F+ TG PDPT++ T L+ LR LCP GN + L +FD++TP FDNKY+ NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 301 CRVVNSN 307
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/304 (61%), Positives = 229/304 (75%), Gaps = 1/304 (0%)
Query: 28 LSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTI 87
L+ +FY TCPN + ++R ++Q AF SD RIGASLIRLHFHDCFV GCDASILLD++ +I
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 DSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPL 147
SEK A PN NSARGF V+DN+K A+E AC VVSC D+L +A++ SV+LSGGPSW V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 148 GRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFS 207
GRRD+ TAN+A AN ++P P+ L + S F VGLN DLVALSGAHTFGRA C FS
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTN-DLVALSGAHTFGRATCGVFS 182
Query: 208 DRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRK 267
+RL++F+ G PDPT++ TLL L+ELCPQ G G+ N D+ TPDAFDN YF+NL+
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNN 242
Query: 268 GLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCR 327
GLLQSDQELFST G+ T AIV F NQT FF+ F SMI MGN+ PLTG+ GEIRL+C+
Sbjct: 243 GLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCK 302
Query: 328 RVNG 331
+ NG
Sbjct: 303 KTNG 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 224/305 (73%), Gaps = 1/305 (0%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QL+P+FY TCPN+ I+ V+ +A +D RIGASL+RLHFHDCFV GCD S+LL++T+T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
I+SE+ A PN NS RG +V++++K AVE +C VSCADIL IAAE + L GGP W VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGRRDS TANR LANQNLP P +L +LK+SF GLN DLV LSG HTFGRA+C F
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLN-TLDLVTLSGGHTFGRARCSTF 179
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
+RLY+F+ TG PDPT++ T L+ LR CPQ G L N D+ TPD FDN+Y+SNL
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 267 KGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 326
GLLQSDQELFSTPGADT IV F NQ FF NF +SMI+MGN+ LTG++GEIRL C
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQC 299
Query: 327 RRVNG 331
VNG
Sbjct: 300 NFVNG 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/306 (55%), Positives = 209/306 (68%), Gaps = 9/306 (2%)
Query: 27 QLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNT 86
QLSP Y +CPN+ I+R+ + A ++IR+ ASLIRLHFHDCFVNGCDAS+LLD
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA-- 58
Query: 87 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVP 146
DSEK A PN NSARGFEVID +KAAVE AC VVSCADILT+AA SV LSGGP W V
Sbjct: 59 -DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 147 LGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFF 206
LGR+D AN+ AN NLP P LD + + F V LN D+VALSGAHTFG+A+C F
Sbjct: 118 LGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVF 175
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLR 266
S+RL++F G PD T++ +LL L+ +CP GGN + A D T D FDN YF NL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEG 235
Query: 267 KGLLQSDQELFSTPGA--DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRL 324
KGLL SDQ LFS+ A T +VE + R+Q+ FF++F +MIRMGN+ G GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRT 293
Query: 325 NCRRVN 330
NCR +N
Sbjct: 294 NCRVIN 299
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 193/303 (63%), Gaps = 10/303 (3%)
Query: 28 LSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTI 87
LS +FY + CPN + I+ + +A + R+GASL+RLHFHDCFV GCDAS+LLD T+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 DSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPL 147
EK A PN NS RGFEVID +K+ VE C VVSCADIL +AA SV GG SW V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 148 GRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFS 207
GRRDS TA+ + AN +LP P +L L S+F N G K +LV LSGAHT G+AQC F
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQCTAFR 180
Query: 208 DRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRK 267
R+Y+ + +D T K L+ CP G L+ FDV TP+ FDN Y+ NLR +K
Sbjct: 181 TRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 268 GLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCR 327
GLL SDQ+LF+ G T + V + N F +F +MI+MGNL PLTG G+IR NCR
Sbjct: 234 GLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCR 291
Query: 328 RVN 330
+ N
Sbjct: 292 KTN 294
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 187/307 (60%), Gaps = 12/307 (3%)
Query: 23 PAQAQLSPSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLD 82
P LS FY TCP +I+RE +Q A DI + A L+RLHFHDCFV GCDAS+LLD
Sbjct: 4 PVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLD 63
Query: 83 STNTIDSEKFAAPN-NNSARGFEVIDNMKAAVEKACR-RVVSCADILTIAAERSVALSGG 140
+ T E+ A PN F+ +++++ +E+ CR VVSC+DIL +AA SV +SGG
Sbjct: 64 GSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGG 123
Query: 141 PSWAVPLGRRDSRT-ANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFG 199
P + VPLGRRDSR+ A+ +LPGPS+++ L + D DLV +SG HT G
Sbjct: 124 PDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLAL-LGRLGLDATDLVTISGGHTIG 182
Query: 200 RAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKY 259
A C F DRL+ +PDPT+ T L +L+ CP G DV+TP+ FDNKY
Sbjct: 183 LAHCSSFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKY 236
Query: 260 FSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQ 319
+ +L R+GL SDQ+LF+ A T IVE F ++Q FF+ F +S+ +MG ++ T +Q
Sbjct: 237 YIDLVNREGLFVSDQDLFTN--AITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQ 294
Query: 320 GEIRLNC 326
GE+R NC
Sbjct: 295 GEVRRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 181/301 (60%), Gaps = 5/301 (1%)
Query: 32 FYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSEK 91
FYN++CP +++++ + AF ++ I LIR+HFHDCFV GCDAS+LLDST +EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 92 FAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRD 151
A PNN S RGFEVI K+AVE AC + VSCADIL AA S L+G ++ VP GRRD
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRD 125
Query: 152 SRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLY 211
+ + AN +P P + +L +SF N L ++V LSGAH+ G A C F++RLY
Sbjct: 126 GTVSLASEANAQIPSPLFNATQLINSFANKTLTAD-EMVTLSGAHSIGVAHCSSFTNRLY 184
Query: 212 DFNKTGKPDPTVDRTLLKQLRELCPQGGN--GAVLANFDVKTPDAFDNKYFSNLRLRKGL 269
+FN DPT+ + LR CP + + D+ TP DN Y++ ++L GL
Sbjct: 185 NFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGL 244
Query: 270 LQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRV 329
L SDQ L + A+ +A V+ N TA+ F +M++MG ++ LTG QGEIR NC V
Sbjct: 245 LTSDQALVTE--ANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVV 302
Query: 330 N 330
N
Sbjct: 303 N 303
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 44 IREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSEKFAAPNNNSARGF 103
I+E+L+ F I ++RL +HD + S +F + A
Sbjct: 15 IKELLKTKFCHPI-----MVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAG 69
Query: 104 EV--IDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALAN 161
V ++ +K +K V+ AD+ +A+ ++ +GGP + GR D +
Sbjct: 70 LVNALNLLKPIKDKYSG--VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEE 127
Query: 162 QNLP--GPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKP 219
LP GP + L+ F +GLNDK ++VALSGAHT GR++ D + GKP
Sbjct: 128 GRLPDAGPPSPAQHLRDVFYRMGLNDK-EIVALSGAHTLGRSRP--------DRSGWGKP 178
Query: 220 DPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKG----LLQSDQE 275
+ + G GA FDN YF +++ R+ +L +D
Sbjct: 179 ETKYTKD------------GPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAA 226
Query: 276 LFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 312
LF P A E + + AFFK++ + ++ NL
Sbjct: 227 LFEDPSFKVYA--EKYAADPEAFFKDYAEAHAKLSNL 261
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 44 IREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSEKFAAPNNNSAR-- 101
+R +++ + +G SLIRL +H+ C +K +PN+ S R
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFK 58
Query: 102 ------GFEVIDNMKAAVEKACRRV--VSCADILTIAAERSVALSGGPSWAVPLGRRDSR 153
G + +D + A+E ++ +S AD+ +AA ++ GGP+ GR D++
Sbjct: 59 PECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAK 118
Query: 154 TANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKF 205
+ + LP S + ++ FR +G ND+ + VAL GAHT G +F
Sbjct: 119 DGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGETHIEF 169
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 44 IREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSEKFAAPNNNSAR-- 101
+R +++ + +G SLIRL +H+ C +K +PN+ S R
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFK 58
Query: 102 ------GFEVIDNMKAAVEKACRRV--VSCADILTIAAERSVALSGGPSWAVPLGRRDSR 153
G + +D + A+E ++ +S AD+ +AA ++ GGP+ GR D++
Sbjct: 59 PECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAK 118
Query: 154 TANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKF 205
+ + LP S + ++ FR +G ND+ + VAL GAHT G +F
Sbjct: 119 DGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 169
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 44 IREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSEKFAAPNNNSAR-- 101
+R +++ + +G SLIRL +H+ C +K +PN+ S R
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFK 57
Query: 102 ------GFEVIDNMKAAVEKACRRV--VSCADILTIAAERSVALSGGPSWAVPLGRRDSR 153
G + +D + A+E ++ +S AD+ +AA ++ GGP+ GR D++
Sbjct: 58 PECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAK 117
Query: 154 TANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKF 205
+ + LP S + ++ FR +G ND+ + VAL GAHT G +F
Sbjct: 118 DGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 168
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 77/299 (25%)
Query: 33 YNSTCPNVANIIREVLQN--AFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDSE 90
Y + P+ I + + F+++ + ++RL +H S T DS+
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWH--------------SAGTFDSK 49
Query: 91 -KFAAPNNNSARGFEVIDNMKAAVEKACR---------RVVSCADILTIAAERSVALSGG 140
K P E+ ++ A R +VS AD +A +V ++GG
Sbjct: 50 TKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGG 109
Query: 141 PSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSF-RNVGLNDKFDLVALSGAHTFG 199
P GR D LP + D L+ F + +GL+D+ D+VALSG HT G
Sbjct: 110 PEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQ-DIVALSGGHTIG 165
Query: 200 RAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKY 259
A + ++G P L+ FDN Y
Sbjct: 166 AAHKE----------RSGFEGPWTSNPLI--------------------------FDNSY 189
Query: 260 FSNLRL--RKGLLQ--SDQELFSTPGADTA--AIVEDFGRNQTAFFKNFVISMIRMGNL 312
F+ L + GLLQ SD+ L + D+ +VE + ++ FF ++ + +++ L
Sbjct: 190 FTELLTGEKDGLLQLPSDKALLT----DSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 61/292 (20%)
Query: 34 NSTCPNVANIIREVLQNA------FLSDIRIGASLIRLHFHDC--FVNGCDASILLDSTN 85
+ P V+ ++ ++ A F+++ R ++RL +H F G T
Sbjct: 1 GKSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF-GTI 59
Query: 86 TIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAV 145
+E + NN +++ +KA ++S AD +A +V ++GGP
Sbjct: 60 KHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPF 114
Query: 146 PLGRRDSRTANRALANQNLPGPSNSLDELKSSF-RNVGLNDKFDLVALSGAHTFGRAQCK 204
GR D LP + D L+ F + +GL D+ D+VALSG HT G A +
Sbjct: 115 HPGREDK---PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE 170
Query: 205 FFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLR 264
++G P L+ FDN YF+ L
Sbjct: 171 ----------RSGFEGPWTSNPLI--------------------------FDNSYFTELL 194
Query: 265 --LRKGLLQ--SDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 312
++GLLQ SD+ L S P +V+ + ++ AFF ++ + ++ L
Sbjct: 195 SGEKEGLLQLPSDKALLSDP--VFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 61/290 (21%)
Query: 36 TCPNVANIIREVLQNA------FLSDIRIGASLIRLHFHDC--FVNGCDASILLDSTNTI 87
+ P V+ ++ ++ A F+++ R ++RL +H F G T
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF-GTIKH 73
Query: 88 DSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPL 147
+E + NN +++ +KA ++S AD +A +V ++GGP
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHP 128
Query: 148 GRRDSRTANRALANQNLPGPSNSLDELKSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFF 206
GR D LP + D L+ F + +GL D+ D+VALSG HT G A +
Sbjct: 129 GREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE-- 182
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLR-- 264
++G P L+ FDN YF+ L
Sbjct: 183 --------RSGFEGPWTSNPLI--------------------------FDNSYFTELLSG 208
Query: 265 LRKGLLQ--SDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 312
++GLLQ SD+ L S P +V+ + ++ AFF ++ + ++ L
Sbjct: 209 EKEGLLQLPSDKALLSDP--VFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 61/290 (21%)
Query: 36 TCPNVANIIREVLQNA------FLSDIRIGASLIRLHFHDC--FVNGCDASILLDSTNTI 87
+ P V+ ++ ++ A F+++ R ++RL +H F G T
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF-GTIKH 73
Query: 88 DSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPL 147
+E + NN +++ +KA ++S AD +A +V ++GGP
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHP 128
Query: 148 GRRDSRTANRALANQNLPGPSNSLDELKSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFF 206
GR D LP + D L+ F + +GL D+ D+VALSG HT G A +
Sbjct: 129 GREDKPEPP---PEGRLPDATKGSDHLRDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE-- 182
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLR-- 264
++G P L+ FDN YF+ L
Sbjct: 183 --------RSGFEGPWTSNPLI--------------------------FDNSYFTELLSG 208
Query: 265 LRKGLLQ--SDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 312
++GLLQ SD+ L S P +V+ + ++ AFF ++ + ++ L
Sbjct: 209 EKEGLLQLPSDKALLSDP--VFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 84 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHL 140
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 141 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 184
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 185 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 221
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 222 KYAADEDAFFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 84 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHL 140
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 141 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 184
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 185 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 221
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 222 KYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 84 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHL 140
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 141 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 184
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 185 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 221
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 222 KYAADEDAFFADYAEAHQKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 61/290 (21%)
Query: 36 TCPNVANIIREVLQNA------FLSDIRIGASLIRLHFHDC--FVNGCDASILLDSTNTI 87
+ P V+ ++ ++ A F+++ R ++RL +H F G T
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPF-GTIKH 73
Query: 88 DSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPL 147
+E + NN +++ +KA ++S AD +A +V ++GGP
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHP 128
Query: 148 GRRDSRTANRALANQNLPGPSNSLDELKSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFF 206
GR D LP + D L+ F + +GL D+ D+VALSG HT G A +
Sbjct: 129 GREDK---PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE-- 182
Query: 207 SDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLR-- 264
G G +N P FDN YF+ L
Sbjct: 183 -----------------------------ASGFEGPWTSN-----PLIFDNSYFTELLSG 208
Query: 265 LRKGLLQ--SDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 312
++GLLQ SD+ L S P +V+ + ++ AFF ++ + ++ L
Sbjct: 209 EKEGLLQLPSDKALLSDP--VFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 96 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHL 152
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 153 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 196
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 197 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 233
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 234 KYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 96 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHL 152
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 153 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 196
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 197 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 233
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 234 KYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 96 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHL 152
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 153 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 196
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 197 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 233
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 234 KYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 47/203 (23%)
Query: 115 KACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
KA ++S AD +A +V ++GGP GR D LP + D L
Sbjct: 96 KAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHL 152
Query: 175 KSSF-RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRE 233
+ F + +GL D+ D+VALSG HT G A + ++G P L+
Sbjct: 153 RDVFGKAMGLTDQ-DIVALSGGHTIGAAHKE----------RSGFEGPWTSNPLI----- 196
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLR--LRKGLLQ--SDQELFSTPGADTAAIVE 289
FDN YF+ L ++GLLQ SD+ L S P +V+
Sbjct: 197 ---------------------FDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVD 233
Query: 290 DFGRNQTAFFKNFVISMIRMGNL 312
+ ++ AFF ++ + ++ L
Sbjct: 234 KYAADEDAFFADYAEAHQKLSEL 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAHT G+ K + Y+ T P+ + L L E N
Sbjct: 161 LNMNDR-EVVALMGAHTLGKTHLK---NSGYEGPWTANPNVFDNSFYLNLLNEDWKLEKN 216
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 217 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 260
Query: 301 NF 302
+F
Sbjct: 261 DF 262
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 59/208 (28%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VALSGAHT G+ K G
Sbjct: 161 LNMNDR-EVVALSGAHTLGKTHLK-------------------------------NSGYE 188
Query: 241 GAVLANFDVKTPDAFDNKYFSNL-----RLRK------------GLLQ--SDQELFSTPG 281
G AN +V FDN ++ NL +L K G LQ +D L P
Sbjct: 189 GPWTANNNV-----FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP- 242
Query: 282 ADTAAIVEDFGRNQTAFFKNFVISMIRM 309
+IV+++ +Q FFK+F + ++
Sbjct: 243 -KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 59/208 (28%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAHT G+ K G
Sbjct: 161 LNMNDR-EVVALMGAHTLGKTHLK-------------------------------NSGYE 188
Query: 241 GAVLANFDVKTPDAFDNKYFSNL-----RLRK------------GLLQ--SDQELFSTPG 281
G AN +V FDN ++ NL +L K G LQ +D L P
Sbjct: 189 GPWTANNNV-----FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP- 242
Query: 282 ADTAAIVEDFGRNQTAFFKNFVISMIRM 309
+IV+++ +Q FFK+F + ++
Sbjct: 243 -KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 59/201 (29%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAHT G+ K G
Sbjct: 161 LNMNDR-EVVALMGAHTLGKTHLK-------------------------------NSGYE 188
Query: 241 GAVLANFDVKTPDAFDNKYFSNL-----RLRKG--------------LLQSDQELFSTPG 281
G AN +V FDN ++ NL +L K +L +D L P
Sbjct: 189 GPWTANNNV-----FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP- 242
Query: 282 ADTAAIVEDFGRNQTAFFKNF 302
+IV+++ +Q FFK+F
Sbjct: 243 -KYLSIVKEYANDQDKFFKDF 262
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 59/201 (29%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAHT G+ K N
Sbjct: 161 LNMNDR-EVVALMGAHTLGKTHLK-----------------------------------N 184
Query: 241 GAVLANFDVKTPDAFDNKYFSNL-----RLRKG--------------LLQSDQELFSTPG 281
+D T + FDN ++ NL +L K +L +D L P
Sbjct: 185 SGYEGPWDA-TNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP- 242
Query: 282 ADTAAIVEDFGRNQTAFFKNF 302
+IV+++ +Q FFK+F
Sbjct: 243 -KYLSIVKEYANDQDKFFKDF 262
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 35/189 (18%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPT-------VDRTLLKQLRE 233
+ +ND+ ++VAL GAH G+ K ++G P + L L E
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNE 209
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGR 293
N+ ++ DA + ++ S +L +D L P +IV+++
Sbjct: 210 ------------NWKLEKNDANNEQWDSKSGYM--MLPTDYSLIQDP--KYLSIVKEYAN 253
Query: 294 NQTAFFKNF 302
+Q FFK+F
Sbjct: 254 DQDKFFKDF 262
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 35/189 (18%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPT-------VDRTLLKQLRE 233
+ +ND+ ++VAL GAH G+ K ++G P + L L E
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNE 211
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGR 293
N+ ++ DA + ++ S +L +D L P +IV+++
Sbjct: 212 ------------NWKLEKNDANNEQWDSKSGYM--MLPTDYSLIQDP--KYLSIVKEYAN 255
Query: 294 NQTAFFKNF 302
+Q FFK+F
Sbjct: 256 DQDKFFKDF 264
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 160 LNMNDR-EVVALMGAHALGKTHLK 182
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 160 LNMNDR-EVVALMGAHALGKTHLK 182
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 35/189 (18%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPT-------VDRTLLKQLRE 233
+ +ND+ ++VAL GAH G+ K ++G P + L L E
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNE 206
Query: 234 LCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGR 293
N A +D K+ Y +L +D L P +IV+++
Sbjct: 207 DWKLEKNDANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYAN 250
Query: 294 NQTAFFKNF 302
+Q FFK+F
Sbjct: 251 DQDKFFKDF 259
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 153
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 154 LNMNDR-EVVALMGAHALGKTHLK 176
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP D +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + Y+ + + + L L E N
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK---NSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKN 218
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 219 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 262
Query: 301 NF 302
+F
Sbjct: 263 DF 264
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + Y+ + + + L L E N
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK---NSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKN 213
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 214 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 257
Query: 301 NF 302
+F
Sbjct: 258 DF 259
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALKGAHALGKTHLK 180
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ + K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTELK 180
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 23/182 (12%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + G + + L L E N
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLKNSG-----YEGGGANNVFTNEFYLNLLNEDWKLEKN 211
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 212 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 255
Query: 301 NF 302
+F
Sbjct: 256 DF 257
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 23/182 (12%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + G + + L L E N
Sbjct: 159 LNMNDR-EVVALMGAHALGKTHLKNSG-----YEGGGANNVFTNEFYLNLLNEDWKLEKN 212
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 213 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 256
Query: 301 NF 302
+F
Sbjct: 257 DF 258
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 164 LNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 164 LNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + Y+ + + L L E N
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK---NSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKN 213
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 214 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 257
Query: 301 NF 302
+F
Sbjct: 258 DF 259
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 164 LNMNDR-EVVALMGAHALGKTHLK 186
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 159 LNMNDR-EVVALMGAHALGKTHLK 181
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 164 LNMNDR-EVVALMGAHALGKTHLK 186
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 163 LNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN 240
+ +ND+ ++VAL GAH G+ K + Y+ + + L L E N
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK---NSGYEGPWGAANNVFTNEYYLNLLNEDWKLEKN 213
Query: 241 GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFK 300
A +D K+ Y +L +D L P +IV+++ +Q FFK
Sbjct: 214 DANNEQWDSKS------GYM--------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFK 257
Query: 301 NF 302
+F
Sbjct: 258 DF 259
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 158 LNMNDR-EVVALMGAHALGKTHLK 180
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDYDKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 121 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRN 180
+S D+ ++ +V GP GR D+ + N LP +++ F+
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDMDKDAGYVRTFFQR 160
Query: 181 VGLNDKFDLVALSGAHTFGRAQCK 204
+ +ND+ ++VAL GAH G+ K
Sbjct: 161 LNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 120/327 (36%), Gaps = 87/327 (26%)
Query: 34 NSTCPNVANIIREVLQNAFLSDIRIGASL---IRLHFHDCFV-------NGCDASILLDS 83
N+ C + I+ ++ +N F + G + +RL FHD G D SI+ +
Sbjct: 11 NAACCILFPILDDIQENLF-DGAQCGEEVHESLRLTFHDAIGFSPTLGGGGADGSII--A 67
Query: 84 TNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVA-LSGGPS 142
+TI++ P N E++ K V K +S D + A V+ GG
Sbjct: 68 FDTIETN---FPANAGID--EIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGVR 119
Query: 143 WAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
LGR D+ A+ + +PGP +S+D + + + G + ++V L +H+ A
Sbjct: 120 IPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAAD 175
Query: 203 CKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSN 262
K DP++ T FD TP+ FD+++F
Sbjct: 176 ---------------KVDPSIPGT-------------------PFD-STPEVFDSQFFIE 200
Query: 263 LRLRKGL--------------------LQSDQELFSTPGADTAAIVEDFGRNQTAFFKNF 302
+L+ L LQSD L P TA + NQ F
Sbjct: 201 TQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDP--QTACEWQSMVNNQPKIQNRF 258
Query: 303 VISMIRMGNLKPLTGNQGEIRLNCRRV 329
+M +M L G ++C V
Sbjct: 259 AATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 120/327 (36%), Gaps = 87/327 (26%)
Query: 34 NSTCPNVANIIREVLQNAFLSDIRIGASL---IRLHFHDCFV-------NGCDASILLDS 83
N+ C + I+ ++ +N F + G + +RL FHD G D SI+ +
Sbjct: 11 NAACCILFPILDDIQENLF-DGAQCGEEVHESLRLTFHDAIGFSPTLGGGGADGSII--A 67
Query: 84 TNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVA-LSGGPS 142
+TI++ P N E++ K V K +S D + A V+ GG
Sbjct: 68 FDTIETNF---PANAGID--EIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGVR 119
Query: 143 WAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
LGR D+ A+ + +PGP +S+D + + + G + ++V L +H+ A
Sbjct: 120 IPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAAD 175
Query: 203 CKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSN 262
K DP++ T FD TP+ FD+++F
Sbjct: 176 ---------------KVDPSIPGT-------------------PFD-STPEVFDSQFFIE 200
Query: 263 LRLRKGL--------------------LQSDQELFSTPGADTAAIVEDFGRNQTAFFKNF 302
+L+ L LQSD L P TA + NQ F
Sbjct: 201 TQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDP--QTACEWQSMVNNQPKIQNRF 258
Query: 303 VISMIRMGNLKPLTGNQGEIRLNCRRV 329
+M +M L G ++C V
Sbjct: 259 AATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P+ S +++ +F +G+ND + ++G H FG+
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTH 298
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P S ++ +F + +NDK ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P S ++ +F + +NDK ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P S ++ +F + +NDK ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P S ++ +F + +NDK ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3TIX|B Chain B, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|D Chain D, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 458
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 178 FRNVGLNDKFDLVALSGAHTFGRAQCKFF-------------SDRLYDFNKTGKPDPTVD 224
F NV L D FD L R CKFF S DF K +P +D
Sbjct: 240 FLNVSLEDDFD--QLQFLTLAKRKSCKFFLFGLSLPLKSPNDSHVGTDFKKNNEP---LD 294
Query: 225 RTLLKQ-LRELCPQGGNGAVLANFDVKTP 252
+ Q LR + P+GG +V + +KTP
Sbjct: 295 KLTYSQYLRPMFPKGGVVSVTLSALIKTP 323
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P S ++ +F +NDK ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFGKVH 265
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 85 NTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWA 144
TI+ F AP+ N RGF I C ++C D + ER ++ + G ++A
Sbjct: 91 QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKD----SGER-LSHAVGCAFA 145
Query: 145 VPLGRRDSRT 154
V L R+ RT
Sbjct: 146 VCLERKQRRT 155
>pdb|2CIV|A Chain A, Chloroperoxidase Bromide Complex
pdb|2CIW|A Chain A, Chloroperoxidase Iodide Complex
pdb|2CIX|A Chain A, Chloroperoxidase Complexed With Cyclopentanedione
pdb|2CIY|A Chain A, Chloroperoxidase Complexed With Cyanide And Dmso
pdb|2CIZ|A Chain A, Chloroperoxidase Complexed With Acetate
pdb|2CJ0|A Chain A, Chloroperoxidase Complexed With Nitrate
pdb|2CJ1|A Chain A, Chloroperoxidase Complexed With Formate (Ethylene Glycol
Cryoprotectant)
pdb|2CJ2|A Chain A, Chloroperoxidase Complexed With Formate (Sugar
Cryoprotectant)
pdb|2J18|A Chain A, Chloroperoxidase Mixture Of Ferric And Ferrous States
(Low Dose Data Set)
pdb|2J19|A Chain A, Ferrous Chloroperoxidase (High Dose Data Set)
pdb|2J5M|A Chain A, Structure Of Chloroperoxidase Compound 0
pdb|1CPO|A Chain A, Chloroperoxidase
pdb|2CPO|A Chain A, Chloroperoxidase
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 43 IIREVLQNAFLSDIRIGASLIRLHFHDCFV 72
I RE LQNAFL+ + I S+I L + FV
Sbjct: 49 ISRETLQNAFLNHMGIANSVIELALTNAFV 78
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 120/328 (36%), Gaps = 89/328 (27%)
Query: 34 NSTCPNVANIIREVLQNAFLSDIRIGASL---IRLHFHDCFV-------NGCDASILLDS 83
N+ C + I+ ++ +N F + G + +RL FHD G D SI+ +
Sbjct: 11 NAACCILFPILDDIQENLF-DGAQCGEEVHESLRLTFHDAIGFSPTLGGGGADGSII--A 67
Query: 84 TNTIDSEKFAAPNNNSARGF-EVIDNMKAAVEKACRRVVSCADILTIAAERSVA-LSGGP 141
+TI++ N + G E++ K V K +S D + A V+ GG
Sbjct: 68 FDTIET------NFPANAGIDEIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGV 118
Query: 142 SWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRA 201
LGR D+ A+ + +P P +S+D + + + G + ++V L +H+ A
Sbjct: 119 RIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAA 174
Query: 202 QCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFS 261
K DP++ T FD TP+ FD+++F
Sbjct: 175 D---------------KVDPSIPGT-------------------PFD-STPEVFDSQFFI 199
Query: 262 NLRLRKGL--------------------LQSDQELFSTPGADTAAIVEDFGRNQTAFFKN 301
+L+ L LQSD L P TA + NQ
Sbjct: 200 ETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDP--QTACEWQSMVNNQPKIQNR 257
Query: 302 FVISMIRMGNLKPLTGNQGEIRLNCRRV 329
F +M +M L G ++C V
Sbjct: 258 FAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 214 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 251
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +F + +ND+ + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 107/295 (36%), Gaps = 83/295 (28%)
Query: 63 IRLHFHDCFV-------NGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEK 115
+RL FHD G D SI+ + +TI++ F A +A E++ K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSII--AFDTIET-NFPA----NAGIDEIVSAQKPFVAK 94
Query: 116 ACRRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDEL 174
+S D + A V+ GG LGR D+ A+ + +P P +S+D +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 KSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLREL 234
+ + G + ++V L +H+ A K DP++ T
Sbjct: 149 LARMGDAGFS-PVEVVWLLASHSIAAAD---------------KVDPSIPGT-------- 184
Query: 235 CPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGL--------------------LQSDQ 274
FD TP+ FD+++F +L+ L LQSD
Sbjct: 185 -----------PFD-STPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDH 232
Query: 275 ELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRV 329
L P TA + NQ F +M +M L G ++C V
Sbjct: 233 LLARDP--QTACEWQSMVNNQPKIQNRFAATMSKMA----LLGQDKTKLIDCSDV 281
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 104 EVIDNMKAAVEKACRRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQ 162
EV+ K + K V+ D + A V+ G P LGR + A +A +
Sbjct: 90 EVVAIQKPFIAK---HGVTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPE---ATQAAPDG 143
Query: 163 NLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRA 201
+P P +++D++ + + G D+ + V L AH+ A
Sbjct: 144 LVPEPFHTIDQVLARMLDAGGFDEIETVXLLSAHSIAAA 182
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 265 LRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKN 301
+R G L TPG+D A ++E G N +AF K
Sbjct: 76 IRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKG 112
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDP--- 221
P P + +++ +FR + +ND + G HTFG+ +D + P+P
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLV-------GPEPEAA 291
Query: 222 TVDRTLLKQLRELCPQGGNGAVLANFDV---KTPDAFDNKYFSNL 263
+++ L G A+ + +V TP +DN + L
Sbjct: 292 PLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEIL 336
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDP--- 221
P P + +++ +FR + +ND + G HTFG+ +D + P+P
Sbjct: 242 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLV-------GPEPEAA 294
Query: 222 TVDRTLLKQLRELCPQGGNGAVLANFDV---KTPDAFDNKYFSNL 263
+++ L G A+ + +V TP +DN + L
Sbjct: 295 PLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEIL 339
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 165 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQ 202
P P + +++ +FR + +ND + G HTFG+
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTH 276
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 104 EVIDNMKAAVEKACRRVVSCADILTIAAERSVALS---GGPSWAVPLGRRDSRTANRALA 160
EV+ K V+K V+ D + A +VALS G P GR+ A +
Sbjct: 89 EVVAMQKPFVQK---HGVTPGDFIAFAG--AVALSNCPGAPQMNFFTGRK---PATQPAP 140
Query: 161 NQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHT 197
+ +P P +++D++ + + G D+ +LV + AH+
Sbjct: 141 DGLVPEPFHTVDQIIARVNDAGEFDELELVWMLSAHS 177
>pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
pdb|3E18|B Chain B, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
Length = 359
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 21 SSPAQAQLSPSFYNSTCPNVANIIREVLQN 50
S PA A+L+PSFYN+ + N ++QN
Sbjct: 296 SLPAPAKLAPSFYNNFVDVLNNTSEPIVQN 325
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 30 PSFYNSTCPNVANIIREVLQNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDSTNTIDS 89
P FY+ P ANI + V+ +A L ++ + ++I + C + I+L+ + +D
Sbjct: 110 PDFYDGVKPIAANIDQIVIVSAILPELSL--NIIDRYLVACETLQIEPIIVLNKIDLLDD 167
Query: 90 EKFAAPNNN 98
E A N
Sbjct: 168 EGMAFVNEQ 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,823,460
Number of Sequences: 62578
Number of extensions: 402941
Number of successful extensions: 979
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 181
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)