BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018766
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 138 VLISSLILPQMFLGNVIEDFIK-DNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQ 196
+++ +++P G ++E + D + E+++ + S L ++ R RV+RPY +
Sbjct: 144 IIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKE 203
Query: 197 FSPKRWGLITGLRGYLTSAFF 217
P LITG R + FF
Sbjct: 204 KLPPEVPLITGQR--VIDTFF 222
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 71 SDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEG 116
S TK+ P ++S+PV I+ PF GK C ++LV+EG
Sbjct: 98 SSTKIVHPKTTDTSVPVNIYRPKTPFLGK------CIENYELVDEG 137
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 11 GLQLPKFKSSNCGFLSHQFVSPSASQ 36
G L + S+N G+L HQF+SPS++Q
Sbjct: 175 GFDLVELHSAN-GYLLHQFLSPSSNQ 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,826,362
Number of Sequences: 62578
Number of extensions: 334732
Number of successful extensions: 720
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 14
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)