Query 018766
Match_columns 350
No_of_seqs 31 out of 33
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 14.2 1.5E+02 0.0052 21.0 3.2 27 319-345 8-37 (41)
2 1zl8_A LIN-7; heterodimer, alp 11.6 1.6E+02 0.0054 22.0 2.7 24 284-310 8-31 (53)
3 4e8u_A Putative uncharacterize 8.7 66 0.0023 28.6 -0.3 9 232-240 9-17 (172)
4 2opc_A AVRL567-A; cobalt, crys 8.4 3.6E+02 0.012 22.8 4.1 49 39-88 52-100 (127)
5 4h3k_B RNA polymerase II subun 8.0 97 0.0033 28.6 0.5 27 46-72 12-39 (214)
6 2rqw_B 24-meric peptide from s 6.4 1.5E+02 0.0051 19.4 0.7 9 339-347 7-15 (26)
7 3qf4_B Uncharacterized ABC tra 5.8 3.1E+02 0.011 27.1 2.8 17 143-159 53-69 (598)
8 4ezc_A UREA transporter 1; mem 5.7 1.8E+03 0.061 21.4 8.8 117 149-280 57-180 (384)
9 3b5x_A Lipid A export ATP-bind 5.5 1.1E+03 0.038 22.9 6.6 16 144-159 42-57 (582)
10 3qbg_A Halorhodopsin; membrane 4.8 6.8E+02 0.023 23.3 4.3 35 153-189 24-58 (291)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=14.20 E-value=1.5e+02 Score=21.00 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhCCCCC
Q 018766 319 VVIFQILGVVCLWSLLTFLL---RLFPSRP 345 (350)
Q Consensus 319 l~vlQ~LgViciWSlssFLm---r~fps~~ 345 (350)
+++--+++++|+...+.++. ||||.+-
T Consensus 8 LstAPVla~~w~~~tAg~lIEiNRffPD~L 37 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILIEFNRFYPDLL 37 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44556789999999988875 8999864
No 2
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=11.57 E-value=1.6e+02 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHhhHhcCCCCCchhhh
Q 018766 284 QLSKAANFIERLMFSMKDLPRSPELLE 310 (350)
Q Consensus 284 QL~RAaqLv~~L~F~vk~~e~t~~~l~ 310 (350)
-++||.+|.+.| -|..|..+++|+
T Consensus 8 Dv~RaiELle~l---q~sgevp~~KL~ 31 (53)
T 1zl8_A 8 DVQRILELMEHV---QKTGEVNNAKLA 31 (53)
T ss_dssp HHHHHHHHHHHH---GGGSSSTHHHHH
T ss_pred HHHHHHHHHHHH---HHcCCCCcHHHH
Confidence 368999999999 678888888875
No 3
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=8.73 E-value=66 Score=28.56 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=6.9
Q ss_pred hcccccchh
Q 018766 232 VTWPVLRLP 240 (350)
Q Consensus 232 ~~WP~tg~~ 240 (350)
++|||+||.
T Consensus 9 ~VWPwmgIl 17 (172)
T 4e8u_A 9 LVYPWKGIV 17 (172)
T ss_dssp EEESCEEEE
T ss_pred EECCCEEEE
Confidence 479999865
No 4
>2opc_A AVRL567-A; cobalt, crystallization, single-wavelength anomalous dispersion (SAD), plant disease resistance, protein binding; 1.43A {Melampsora lini}
Probab=8.40 E-value=3.6e+02 Score=22.80 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=33.3
Q ss_pred cccccccccccccccccccCccceeEeecCCCCCCCCCcCCCCCCCCCcc
Q 018766 39 SRSQSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVA 88 (350)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~ 88 (350)
.|.+.+-|.--..-++-+.+||.+.+-.-|||-|..-...-| ++|+..-
T Consensus 52 eq~eE~~FdV~I~HSsGp~~nrARsLG~VnSNmdq~W~~~~R-~~G~t~~ 100 (127)
T 2opc_A 52 EQAEELHFCVHIAHSSGPKLNRARSLGTVNSNMDQHWAQAQR-NSGATRR 100 (127)
T ss_dssp CCSSCCEEEEEECCSSSSCTTSCEEEEEEETTTTSSCBCCBC-CCSSCCC
T ss_pred chhhhheeEeEeecccCcccchhccccccccCccchhhhhhh-hcCceee
Confidence 455555665545556678999999999999998887666544 3444333
No 5
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=8.01 E-value=97 Score=28.61 Aligned_cols=27 Identities=26% Similarity=0.098 Sum_probs=11.1
Q ss_pred ccccccccccccC-ccceeEeecCCCCC
Q 018766 46 FGNAYKWYSAWSS-KRGAILCASNSGSD 72 (350)
Q Consensus 46 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~ 72 (350)
.|.+-+.+.+|++ -|.+++||||-|+.
T Consensus 12 ~~~~p~~~~mp~~~Lr~avVCaSN~NRS 39 (214)
T 4h3k_B 12 SGLVPRGSHMPSSPLRVAVVSSSNQNRS 39 (214)
T ss_dssp --------------CEEEEEESSSSSHH
T ss_pred cCCCCCCCCCCCCCCeEEEECCCCcchh
Confidence 4556667777765 35789999988764
No 6
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=6.45 E-value=1.5e+02 Score=19.36 Aligned_cols=9 Identities=44% Similarity=1.043 Sum_probs=7.3
Q ss_pred hhCCCCCCC
Q 018766 339 RLFPSRPVA 347 (350)
Q Consensus 339 r~fps~~v~ 347 (350)
||+|+||-+
T Consensus 7 KFiPsRPAP 15 (26)
T 2rqw_B 7 KFIPSRPAP 15 (26)
T ss_dssp SSCCSSCCC
T ss_pred ccccCCCCC
Confidence 789999865
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=5.81 E-value=3.1e+02 Score=27.11 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=11.4
Q ss_pred cccccccchHHHHHHhc
Q 018766 143 LILPQMFLGNVIEDFIK 159 (350)
Q Consensus 143 ~i~P~l~Lp~vissif~ 159 (350)
.+++++++..++..+..
T Consensus 53 ~~~~p~~~~~~id~~~~ 69 (598)
T 3qf4_B 53 GVLSPYLIGKTIDVVFV 69 (598)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34566777777777664
No 8
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=5.75 E-value=1.8e+03 Score=21.44 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred cchHHHHHHhccchHHHHHHHhhhhH-------HHHHHHHHHHHHhhccCCCcccCCCCCcccccccccchhhHhhhhhh
Q 018766 149 FLGNVIEDFIKDNLLMEIVSSLTFES-------MFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGL 221 (350)
Q Consensus 149 ~Lp~vissif~d~~lt~~lslf~~Ea-------lFy~G~alFLlmaD~~~RP~~q~s~~~~~~lt~~~gy~~sa~~~~~l 221 (350)
.|+.+=.-+|.|+-+++++++++.=. .=-+|+.+=.+.|--.+-+. ...-.|+.||. .+..
T Consensus 57 ~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg~~~-------~~I~~GLyGfN-----g~Lv 124 (384)
T 4ezc_A 57 VLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQDR-------SAITAGLQGYN-----ATLV 124 (384)
T ss_dssp HHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCH-------HHHHHTTTTHH-----HHHH
T ss_pred HhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHcchhhhh-----HHHH
Confidence 45655555789999999998875422 11123333333333222211 11225688888 3334
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceehhhH
Q 018766 222 KVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVY 280 (350)
Q Consensus 222 gviiPl~~~~~~WP~tg~~a~vaL~PYLvgl~VQ~afE~l~~~~kSP~WplvPiIFevY 280 (350)
|+.+..+.--..|.|.-. ..+.++- ....++|.+.-....+|+=|+. -.|+|.-.+
T Consensus 125 gial~~f~~~~~~~~~ll-l~~~~~a-~~~~iv~~aL~~~l~~~~LP~l-T~PFvl~tw 180 (384)
T 4ezc_A 125 GILMAIYSDKGNYFWWLL-FPVSAMS-MTCPVFSSALNSVLSKWDLPVF-TLPFNMALS 180 (384)
T ss_dssp HHHHHHTBTTCTTCGGGH-HHHHHHH-HHHHHHHHHHHHHHGGGTCCCT-THHHHHHHH
T ss_pred HHHHHHHhccCchHHHHH-HHHHHHH-HHHHHHHHHHHHHHhcCCCcee-cHhHHHHHH
Confidence 443333221122334211 1111111 1222356666666777887773 346665443
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=5.48 E-value=1.1e+03 Score=22.90 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=10.2
Q ss_pred ccccccchHHHHHHhc
Q 018766 144 ILPQMFLGNVIEDFIK 159 (350)
Q Consensus 144 i~P~l~Lp~vissif~ 159 (350)
+++++++..++..+..
T Consensus 42 ~~~~~~~~~~id~~~~ 57 (582)
T 3b5x_A 42 TYMISLLKPLLDEGFG 57 (582)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456667777776664
No 10
>3qbg_A Halorhodopsin; membrane protein, ION pump, retinal, membrane; HET: RET BNG 22B; 1.80A {Natronomonas pharaonis} PDB: 3a7k_A* 3abw_A* 3qbi_A* 3qbk_A* 3qbl_A*
Probab=4.84 E-value=6.8e+02 Score=23.29 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=14.9
Q ss_pred HHHHHhccchHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 018766 153 VIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDR 189 (350)
Q Consensus 153 vissif~d~~lt~~lslf~~EalFy~G~alFLlmaD~ 189 (350)
+++.+..|..+-|-+-..+ ++|-++..+|+.+..+
T Consensus 24 ~~~~~~~~~~~~~~lW~v~--~~m~~~tv~F~~~~~~ 58 (291)
T 3qbg_A 24 LFEFVLNDPLLASSLYINI--ALAGLSILLFVFMTRG 58 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHH--HHHHHHHHHHHHHTTT
T ss_pred HHHHhccCCeeeeeHHHHH--HHHHHHHHHHHHHHhc
Confidence 3444444444444333333 4444444444444443
Done!