Query 018766
Match_columns 350
No_of_seqs 31 out of 33
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 05:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018766.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018766hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 12.0 74 0.0054 21.0 2.7 28 317-344 6-36 (41)
2 d2ds5a1 g.39.1.11 (A:11-48) Cl 8.7 40 0.0029 21.7 0.3 17 104-122 5-21 (38)
3 d1mjsa_ b.26.1.1 (A:) Smad3 MH 6.3 74 0.0054 26.3 1.0 24 266-299 163-186 (190)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 5.7 2.5E+02 0.018 20.9 3.7 20 144-163 33-52 (319)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 5.2 48 0.0035 23.9 -0.9 20 129-148 63-82 (91)
6 d1iica2 d.108.1.2 (A:219-455) 5.0 97 0.0071 26.6 0.9 21 93-113 98-119 (237)
7 d1bu2a1 a.74.1.1 (A:22-148) Vi 4.6 1.5E+02 0.011 21.8 1.7 13 322-334 73-85 (127)
8 d1g3nc1 a.74.1.1 (C:16-147) Vi 4.5 1.6E+02 0.011 21.7 1.7 14 321-334 77-90 (132)
9 d1ri9a_ b.34.2.1 (A:) Fyn-bind 4.1 2.6E+02 0.019 20.1 2.7 46 58-104 20-71 (77)
10 d1aiea_ a.53.1.1 (A:) p53 tetr 4.0 2.7E+02 0.019 17.1 2.2 16 277-294 13-28 (31)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=12.04 E-value=74 Score=21.02 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhCCCC
Q 018766 317 SMVVIFQILGVVCLWSLLTFLL---RLFPSR 344 (350)
Q Consensus 317 ~ll~vlQ~LgViciWSlssFLm---r~fps~ 344 (350)
+-+++--++..+|++....+|. ||||.+
T Consensus 6 ~ylstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 6 TYLSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4455667889999999999986 899975
No 2
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=8.68 E-value=40 Score=21.75 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=11.6
Q ss_pred eecCCCccccccCccccCc
Q 018766 104 SFCGLTHQLVEEGKLMSAP 122 (350)
Q Consensus 104 SF~~~~~q~~eE~~l~ss~ 122 (350)
||||++.+. -++++..+
T Consensus 5 SFCgk~~~e--V~~LI~G~ 21 (38)
T d2ds5a1 5 SFCGKSQHE--VRKLIAGP 21 (38)
T ss_dssp TTTCCBTTT--SSCEEECS
T ss_pred eCCCCCHHH--HHHHhcCC
Confidence 899999764 45565544
No 3
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=74 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.679 Sum_probs=20.5
Q ss_pred CCCCccccceehhhHHHHHHhHHHHHHHHHhhHh
Q 018766 266 GSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSM 299 (350)
Q Consensus 266 kSP~WplvPiIFevYRl~QL~RAaqLv~~L~F~v 299 (350)
..|||.-| .|++++|++++.+=+|
T Consensus 163 stPCWiEi----------~l~~pl~~ld~vL~~m 186 (190)
T d1mjsa_ 163 STPCWIEL----------HLNGPLQWLDKVLTQM 186 (190)
T ss_dssp TSSSEEEE----------EEHHHHHHHHHHHHHT
T ss_pred cCCEEEEE----------ecCChhHHHHHHHhhc
Confidence 37999887 8999999999988655
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.66 E-value=2.5e+02 Score=20.94 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=11.6
Q ss_pred ccccccchHHHHHHhccchH
Q 018766 144 ILPQMFLGNVIEDFIKDNLL 163 (350)
Q Consensus 144 i~P~l~Lp~vissif~d~~l 163 (350)
++.++.+..++.+++.+...
T Consensus 33 ~~~~~~~~~~id~~~~~~~~ 52 (319)
T d3b60a2 33 TFMLSLLKPLLDDGFGKTDR 52 (319)
T ss_dssp HHHHHHHTHHHHSSTTSTTH
T ss_pred HHHHHHHHHHHHHHhccCCH
Confidence 34455666677666655543
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.18 E-value=48 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.2
Q ss_pred ceEeehhhHHHHHhcccccc
Q 018766 129 SFLWILAPVVLISSLILPQM 148 (350)
Q Consensus 129 s~LWllGP~vLvAS~i~P~l 148 (350)
-..|-+.|++++....+|++
T Consensus 63 Ei~WtiIP~iil~~iav~s~ 82 (91)
T d1fftb2 63 EAVVWTVPILIIIFLAVLTW 82 (91)
T ss_dssp HHHTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 48899999999999888765
No 6
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.97 E-value=97 Score=26.63 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=15.5
Q ss_pred CCCCCCC-cceEeecCCCcccc
Q 018766 93 PEPFRGK-SGSVSFCGLTHQLV 113 (350)
Q Consensus 93 ~e~~~GK-~G~VSF~~~~~q~~ 113 (350)
+|..+|| ..++|||..|+...
T Consensus 98 ve~~~g~ITDF~SFY~Lpstvi 119 (237)
T d1iica2 98 VEQPDGKITDFFSFYSLPFTIL 119 (237)
T ss_dssp EECTTSCEEEEEEEEECCEEEC
T ss_pred EECCCCcEeeEEEEEecchhhh
Confidence 4554565 68999999997753
No 7
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=4.58 E-value=1.5e+02 Score=21.78 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 018766 322 FQILGVVCLWSLL 334 (350)
Q Consensus 322 lQ~LgViciWSls 334 (350)
+|.+|+.|+|--+
T Consensus 73 lqLi~~tcL~IAs 85 (127)
T d1bu2a1 73 LQKIGAACVLIGS 85 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999443
No 8
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=4.49 E-value=1.6e+02 Score=21.75 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 018766 321 IFQILGVVCLWSLL 334 (350)
Q Consensus 321 vlQ~LgViciWSls 334 (350)
-+|.+|+.|+|--+
T Consensus 77 ~lqLia~tcl~iAs 90 (132)
T d1g3nc1 77 HFQKTGSACLLVAS 90 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999999443
No 9
>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.08 E-value=2.6e+02 Score=20.09 Aligned_cols=46 Identities=17% Similarity=0.045 Sum_probs=0.0
Q ss_pred CccceeEeecCCCCCCCCCcCCCCCCCCCccccCCCCC------CCCCcceEe
Q 018766 58 SKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEP------FRGKSGSVS 104 (350)
Q Consensus 58 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~~~e~------~~GK~G~VS 104 (350)
+.+..+.|+.++...++..++=+.++.+-+...+. ++ .+||=|.|.
T Consensus 20 l~~~~v~~~~~~~k~g~~dL~vk~GE~ldVIr~t~-~~k~LcRN~~GkYGYV~ 71 (77)
T d1ri9a_ 20 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTD-DTKVLCRNEEGKYGYVL 71 (77)
T ss_dssp SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESS-SSEEEEEETTTEEEEEE
T ss_pred EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCC-CCeEEEEcCCCcEEEEE
No 10
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.99 E-value=2.7e+02 Score=17.13 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHHHHH
Q 018766 277 FEVYRLYQLSKAANFIER 294 (350)
Q Consensus 277 FevYRl~QL~RAaqLv~~ 294 (350)
||++| .||.|++|-++
T Consensus 13 femfr--elnealelkda 28 (31)
T d1aiea_ 13 FEMFR--ELNEALELKDA 28 (31)
T ss_dssp HHHHH--HHHHHHHHHHH
T ss_pred HHHHH--HHHHHHhhhhc
Done!