Query 018767
Match_columns 350
No_of_seqs 477 out of 1275
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 05:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.7E-40 1.3E-44 286.5 24.5 335 2-349 125-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.8E-30 2.3E-34 219.6 9.1 300 1-328 117-430 (451)
3 3o7q_A L-fucose-proton symport 99.9 9.4E-26 3.2E-30 193.1 19.0 266 1-317 115-418 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.3E-24 4.3E-29 188.8 17.4 331 1-338 106-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.7E-24 5.7E-29 181.4 1.1 274 2-325 87-369 (375)
6 2cfq_A Lactose permease; trans 99.8 1.1E-22 3.9E-27 172.5 0.7 291 7-339 104-407 (417)
7 2xut_A Proton/peptide symporte 99.8 9.7E-21 3.3E-25 165.7 12.1 82 2-83 108-196 (524)
8 3o7q_A L-fucose-proton symport 99.6 5.3E-15 1.8E-19 126.3 12.6 144 154-306 32-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.6 1.8E-15 6.2E-20 129.7 9.4 180 147-336 27-211 (451)
10 2gfp_A EMRD, multidrug resista 99.6 2.4E-14 8.1E-19 119.7 12.7 162 164-337 16-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.5 1.3E-13 4.6E-18 119.5 9.2 137 178-326 49-191 (491)
12 2xut_A Proton/peptide symporte 99.4 2.1E-12 7.2E-17 112.9 13.3 150 166-326 30-193 (524)
13 4gc0_A D-xylose-proton symport 99.3 1.4E-11 4.9E-16 106.7 14.1 150 185-335 59-223 (491)
14 2cfq_A Lactose permease; trans 99.1 3.6E-11 1.2E-15 101.8 2.9 146 165-321 24-177 (417)
15 2g9p_A Antimicrobial peptide l 55.8 2.6 9E-05 17.9 0.1 13 200-212 2-14 (26)
16 3l1l_A Arginine/agmatine antip 31.2 2.3E+02 0.0077 23.5 10.0 16 319-334 414-429 (445)
17 2fyu_K Ubiquinol-cytochrome C 30.7 56 0.0019 18.1 2.9 39 30-68 4-42 (56)
18 3arc_T Photosystem II reaction 26.3 58 0.002 15.5 2.1 11 80-90 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.7e-40 Score=286.49 Aligned_cols=335 Identities=34% Similarity=0.607 Sum_probs=261.0
Q ss_pred CceehhhhHhhhhhccccccchhhhhhhcccCccchhhHHhHHHHHHHHHHHHHHHhcCCc------------hhhHHHh
Q 018767 2 DLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNLRGLLTTLNQLLIVTGSSVAYIIGSII------------PWRILAL 69 (350)
Q Consensus 2 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------~Wr~~f~ 69 (350)
|+++++++|+++|++.|+..+....+++|+.|+++|++..++.+.+...|.++++.++... +||+.+.
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 6778999999999999999999999999999999999999999999999999888776432 6999999
Q ss_pred hchHHHHHHHHHHhccCCChHHHHHhCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcccchhHH
Q 018767 70 TGLVPCVLLLVGLCFVPESPRWLAKVGLDKEFQVALRKLRGKDADITREAAEIQVYILTLRSLPKASIRDLFKSKYIRSV 149 (350)
Q Consensus 70 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (350)
+..++.++.++..+++||||+|+..+++.+++++.+++...++...++..+..+...+.++. ......+ ..++.
T Consensus 205 ~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~ 278 (491)
T 4gc0_A 205 SECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT---GGRLLMF---GVGVI 278 (491)
T ss_dssp TTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHS---CCTHH
T ss_pred hhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh---hhHHHHh---cccHH
Confidence 99999999888899999999999999999999998888765433222222211111111111 1111111 22445
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHhCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHH
Q 018767 150 IIGVSLMVLQQFVGINGIGFYTSETFVQAGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFL 227 (350)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 227 (350)
........+....+.+.+.+|.+.+.+..+.+... ......++..+++.++++++.||+|||+.++.+...+.++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 55566666777777788888999888887776654 5566778888999999999999999999999988888887777
Q ss_pred HHHHHHhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhHHHHh
Q 018767 228 AGTSFFLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFNFLMS 307 (350)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 307 (350)
++........ ....+....++..++..+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+
T Consensus 359 l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 359 LGTAFYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHTTCC-------HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHhcccc-------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443322 344455555666677788888888999999999999999999999999999999988877654
Q ss_pred h-------hccchhhHHHHhhHHHhhheeeecccCCCCCHHHHHHhhhc
Q 018767 308 W-------SSSGTFFIYSAFSVITVLFVAKFVPETKGKTLEQIQASINK 349 (350)
Q Consensus 308 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (350)
. +....++++++++++..++.++++||||+|++||+|+.+|+
T Consensus 432 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 432 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 2 23445778888888888888899999999999999987764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=6.8e-30 Score=219.59 Aligned_cols=300 Identities=13% Similarity=0.148 Sum_probs=197.3
Q ss_pred CCceehhhhHhhhhhccccccchhhhhhhcccCccchhhHHhHHHHHHHHHHHHHHHhcCCc----h-hhHHHhhchHHH
Q 018767 1 MDLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNLRGLLTTLNQLLIVTGSSVAYIIGSII----P-WRILALTGLVPC 75 (350)
Q Consensus 1 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~-Wr~~f~~~~~~~ 75 (350)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+ + ||+.|++.+++.
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~ 196 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999988764 7 999999988877
Q ss_pred HHH-HHHHhccCCChHHHHHhCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcccchhHHHHHHH
Q 018767 76 VLL-LVGLCFVPESPRWLAKVGLDKEFQVALRKLRGKDADITREAAEIQVYILTLRSLPKASIRDLFKSKYIRSVIIGVS 154 (350)
Q Consensus 76 ~~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (350)
++. ++..+++||+|+....+++.++ .++.+++ .++..+++...++...++.++++..+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 259 (451)
T 1pw4_A 197 ILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQYVLPNKLLWYIAI--- 259 (451)
T ss_dssp HHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHHTSSCHHHHHHHH---
T ss_pred HHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHHHHcCHHHHHHHH---
Confidence 664 4556778998854221111100 0000000 000000011111112355555544333333
Q ss_pred HHHHHHhhcchhhhhhHHHHHHH-hCCCCch--HHHHHHHHHhhhHHhhHhhhhccc--CCceeehhhhHHHH-HHHHHH
Q 018767 155 LMVLQQFVGINGIGFYTSETFVQ-AGLSSGK--LGTILYACVQVPITVVGAFLMDKS--GRRPLIMISAAGTF-LGCFLA 228 (350)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~ 228 (350)
..+...........+.|.+.++ .+.+..+ .......++.+++.++.|++.||+ |||+.+..+..+.. ++.+.+
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 260 -ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 2222222345566677777766 6777655 667778889999999999999999 99988777665554 333332
Q ss_pred HHHHHhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHH-HHHHHHHHhHHHHh
Q 018767 229 GTSFFLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWS-GAWAVSYTFNFLMS 307 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~ 307 (350)
......+ .+.......+.+.+.... .+....++.|.+|++.|+++.|+.+....+ |..++|.+.|.+.+
T Consensus 339 ---~~~~~~~------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 339 ---WMNPAGN------PTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp ---TSCCTTC------HHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhcccC------HHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 233333333344333333 334458899999999999999999999999 99999999999988
Q ss_pred hh-ccchhhHHHHhhHHHhhhe
Q 018767 308 WS-SSGTFFIYSAFSVITVLFV 328 (350)
Q Consensus 308 ~~-~~~~~~~~~~~~~~~~~~~ 328 (350)
.. ....+.+.+++.++..++.
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 74 3444555555555544444
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=9.4e-26 Score=193.06 Aligned_cols=266 Identities=14% Similarity=0.116 Sum_probs=185.5
Q ss_pred CCceehhhhHhhhhhccccccchhhhhhhcccCccchhhHHhHHHHHHHHHHHHHHHhcCCch-----------------
Q 018767 1 MDLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNLRGLLTTLNQLLIVTGSSVAYIIGSIIP----------------- 63 (350)
Q Consensus 1 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~----------------- 63 (350)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 194 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSP 194 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCc
Confidence 477889999999999999999999999999999999999999999999999999999988762
Q ss_pred -------------hhHHHhhchHHHHHHHHH--HhccCCChHHHHHhCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Q 018767 64 -------------WRILALTGLVPCVLLLVG--LCFVPESPRWLAKVGLDKEFQVALRKLRGKDADITREAAEIQVYILT 128 (350)
Q Consensus 64 -------------Wr~~f~~~~~~~~~~~~~--~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (350)
||+.|++.++..++..+. ....||+++. +++. +
T Consensus 195 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-----------------------------~ 242 (438)
T 3o7q_A 195 EQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-----------------------------A 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-----------------------------S
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-----------------------------c
Confidence 999998766655554333 2335665421 0000 0
Q ss_pred ccCCCcchhhhhhcccchhHHHHHHHHHHHHHhhcchhhhhhHHHH-HHHh-CCCCch--HHHHHHHHHhhhHHhhHhhh
Q 018767 129 LRSLPKASIRDLFKSKYIRSVIIGVSLMVLQQFVGINGIGFYTSET-FVQA-GLSSGK--LGTILYACVQVPITVVGAFL 204 (350)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~g~l 204 (350)
+++..+.+++++++++..+...+..++... .......+.|.+ .++. +.+... .......++.+++.++.|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 243 KQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp STTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122355677776665554443333332 234455566666 6654 777655 66777788899999999999
Q ss_pred hcccCCceeehhhhHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHh
Q 018767 205 MDKSGRRPLIMISAAGTFLGCFLAGTSFFLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAG 284 (350)
Q Consensus 205 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 284 (350)
.||+|||+.+..+..+..++.+++... + .........+.+.+.+.. .+..+++..|.+|++ ++.+.
T Consensus 319 ~~r~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 319 ISRFAPHKVLAAYALIAMALCLISAFA---G---------GHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHC---C---------HHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHc---C---------CcHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchh
Confidence 999999999888877776665554321 1 122233333444444433 355558889999977 88888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhc--cchhhHH
Q 018767 285 SLVVLVNWSGAWAVSYTFNFLMSWSS--SGTFFIY 317 (350)
Q Consensus 285 ~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~ 317 (350)
++.. ...+|+.++|.+.|.+.+..+ ...+.+.
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 8877 677999999999999998743 3444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=1.3e-24 Score=188.75 Aligned_cols=331 Identities=13% Similarity=-0.018 Sum_probs=187.7
Q ss_pred CCceehhhhHhhhhhccccccchhhhhhhcccCccc--hhhHHhHHHHHHHHHHHHHHHhcCCc----hhhHHHhhchHH
Q 018767 1 MDLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNL--RGLLTTLNQLLIVTGSSVAYIIGSII----PWRILALTGLVP 74 (350)
Q Consensus 1 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~----~Wr~~f~~~~~~ 74 (350)
+|++.++++|+++|++.+...+...+++.|++|+++ |+++.++.+.+.++|..++|.+++.+ |||+.|++.++.
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~ 185 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIG 185 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 477889999999999999999999999999999988 77788889999999999999888876 899999998776
Q ss_pred HHHHHHHHhcc-CC----ChHHHHHhCChHHHHHHHHH---------------HhcCCcchHHHHHH--HH------HHH
Q 018767 75 CVLLLVGLCFV-PE----SPRWLAKVGLDKEFQVALRK---------------LRGKDADITREAAE--IQ------VYI 126 (350)
Q Consensus 75 ~~~~~~~~~~~-~e----sp~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~------~~~ 126 (350)
.++..+...+. |+ ..+....+.+.++.++..+. ...+..+.++.... .. ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (491)
T 4aps_A 186 MFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYF 265 (491)
T ss_dssp HHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHH
Confidence 66644433321 21 10000011122222222221 01111111110000 00 000
Q ss_pred HhccCCCcchhhhhhcccchhHHHHHHHHHHHHHhhcchhhhhhHHHHHHH-hCCCC--chHHHHHHHHHhhhHHhhHhh
Q 018767 127 LTLRSLPKASIRDLFKSKYIRSVIIGVSLMVLQQFVGINGIGFYTSETFVQ-AGLSS--GKLGTILYACVQVPITVVGAF 203 (350)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~ 203 (350)
....++.+.+. ..+++. ..... ..+........+.....+.+.+.++ .+.+. .........+..+++.++.++
T Consensus 266 ~~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 266 AWMISSVKVTS--TEHLRV-VSYIP-LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp HHHC--------------C-TTHHH-HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccH--HHHHHH-HHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH
Confidence 00000011110 111111 11111 1111112222233444455555544 34442 226667778888888999999
Q ss_pred hhcccCCceeeh-----hhhHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcc
Q 018767 204 LMDKSGRRPLIM-----ISAAGTFLGCFLAGTSFFLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPIN 278 (350)
Q Consensus 204 l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 278 (350)
+.||++||+... .+..+..++...+........... +...+.......+.+.+.+.. .+..+.++.|.+|++
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~ 418 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG--KVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKA 418 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT--TCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTT
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHH
Confidence 999999997765 556566665555544332211000 001233333344444444333 445558999999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhHHHHhhhccchhhHHHHhhHHHhhheeeecccCCCC
Q 018767 279 IKGVAGSLVVLVNWSGAWAVSYTFNFLMSWSSSGTFFIYSAFSVITVLFVAKFVPETKGK 338 (350)
Q Consensus 279 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (350)
.|+++.|+.+....+|..++|.+.+.+.+.+....+...+++..+..++.+++.++.+++
T Consensus 419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877666677777777776666665555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=1.7e-24 Score=181.44 Aligned_cols=274 Identities=17% Similarity=0.105 Sum_probs=181.0
Q ss_pred CceehhhhHhhhhhccccccchhhhhhhcccCccchhhHHhHHHHHHHHHHHHHHHhcCCc----hhhHHHhhchHHHHH
Q 018767 2 DLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNLRGLLTTLNQLLIVTGSSVAYIIGSII----PWRILALTGLVPCVL 77 (350)
Q Consensus 2 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~Wr~~f~~~~~~~~~ 77 (350)
|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||+.|++.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999988766 899999988887777
Q ss_pred HHH-HHhccCCChHHHHHhCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcccchhHHHHHHHHH
Q 018767 78 LLV-GLCFVPESPRWLAKVGLDKEFQVALRKLRGKDADITREAAEIQVYILTLRSLPKASIRDLFKSKYIRSVIIGVSLM 156 (350)
Q Consensus 78 ~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (350)
..+ ..+.+||+++.. + ++++.+.++++.++++..+...+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (375)
T 2gfp_A 167 VTFSMARWMPETRPVD---A--------------------------------PRTRLLTSYKTLFGNSGFNCYLLMLIGG 211 (375)
T ss_dssp HHCCCCCSSCCCSTTT---C--------------------------------CCCCTTTCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcccCCCC---c--------------------------------ccccHHHHHHHHhcCcchHHHHHHHHHH
Confidence 555 556688876420 0 0011233455666655444444333333
Q ss_pred HHHHhhcchhhhhhHHHHHHH-hCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHH-HHHHHHHHHHHH
Q 018767 157 VLQQFVGINGIGFYTSETFVQ-AGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAG-TFLGCFLAGTSF 232 (350)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~ 232 (350)
... ......+.|.+.++ .+.+... .......++.+++.++.+++.||++++ +..+... ...+........
T Consensus 212 ~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 212 LAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 222 23333444444333 5555443 566677788889999999999998872 2222222 111111111111
Q ss_pred HhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhHHHHhhhccc
Q 018767 233 FLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFNFLMSWSSSG 312 (350)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 312 (350)
.... + .+.......+.+.+.+...... .++..|..| +.|+++.|+.+....+|..++|.+.+.+.+.+++.
T Consensus 286 ~~~~-~------~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 356 (375)
T 2gfp_A 286 FGVM-N------VWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGS 356 (375)
T ss_dssp HHHH-H------HHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred hccc-c------HHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 0000 0 2333344444454555444444 489999998 78999999999999999999999999988775555
Q ss_pred hhhHHHHhhHHHh
Q 018767 313 TFFIYSAFSVITV 325 (350)
Q Consensus 313 ~~~~~~~~~~~~~ 325 (350)
..+...+...+..
T Consensus 357 ~~~~~~~~~~~~~ 369 (375)
T 2gfp_A 357 LGLLMTLMGLLIV 369 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=1.1e-22 Score=172.47 Aligned_cols=291 Identities=8% Similarity=0.021 Sum_probs=162.4
Q ss_pred hhhHhhhhhccccccchhhhhhhcccCc--cchhhHHhHHHHHHHHHHHHHHHhcCCc---hhhHHHhhchHHHHHHHHH
Q 018767 7 TLEDFSTGYGIGVFSYVVPIFIAEIAPR--NLRGLLTTLNQLLIVTGSSVAYIIGSII---PWRILALTGLVPCVLLLVG 81 (350)
Q Consensus 7 ~~~R~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~Wr~~f~~~~~~~~~~~~~ 81 (350)
+..|++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4456666666665555545555555443 3556666777666777777787777665 7999999887766555554
Q ss_pred HhccCCChHHHHHhCChHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 018767 82 LCFVPESPRWLAKVGLDKEFQVALRKLRGKDADITREAAEIQVYILTLRSLPKASIRDLFKSKYIRSVIIGVSLMVLQQF 161 (350)
Q Consensus 82 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (350)
.++.+|+|+. +.+.++ +++ +++++....++++.++++..+...+.......
T Consensus 184 ~~~~~~~~~~---~~~~~~----------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 234 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN----------AVG-------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSC--- 234 (417)
T ss_dssp SCSSCCCCSC---SSCSSS----------SSS-------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH---
T ss_pred HHHcCccccc---cccccc----------ccc-------------cccccccHHHHHHHhcCCchhhHHHHHHHHHH---
Confidence 4444443310 000000 000 00001111234456665544333322121111
Q ss_pred hcchhhhhhHHHHHHHh-CC---CCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHHHHHHHHhc
Q 018767 162 VGINGIGFYTSETFVQA-GL---SSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFLAGTSFFLK 235 (350)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~~---~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 235 (350)
.+.....+.|.++.+. +. +... .......++.+++.++.++++||+|||+.+..+..+..+....+. ...
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~---~~~ 310 (417)
T 2cfq_A 235 -TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS---FAT 310 (417)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred -HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH---Hhc
Confidence 1222222344444332 11 1111 344455667788899999999999999988777666655543331 111
Q ss_pred ccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHH-HHHHHHHHHHHHHHhHHHHhh-hccch
Q 018767 236 GQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLV-VLVNWSGAWAVSYTFNFLMSW-SSSGT 313 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~-~~~~~ 313 (350)
+ .+..+....+......... +..+.++.|.+|++.|+++.+.. +....+|+.++|.+.|.+.+. +....
T Consensus 311 ~--------~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 311 S--------ALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp S--------HHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred c--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 1 2222222222222222222 23358999999999999999994 788899999999999998876 43445
Q ss_pred hhHHHHhhHHHhhheeeecccCCCCC
Q 018767 314 FFIYSAFSVITVLFVAKFVPETKGKT 339 (350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (350)
+.+.+++.++..++.+...+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 55556655655555555566655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=9.7e-21 Score=165.68 Aligned_cols=82 Identities=15% Similarity=0.018 Sum_probs=71.1
Q ss_pred CceehhhhHhhhhhccccccchhhhhhhcccCccchhhHHhH---HHHHHHHHHHHHHHhcCCc----hhhHHHhhchHH
Q 018767 2 DLCYLTLEDFSTGYGIGVFSYVVPIFIAEIAPRNLRGLLTTL---NQLLIVTGSSVAYIIGSII----PWRILALTGLVP 74 (350)
Q Consensus 2 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~~----~Wr~~f~~~~~~ 74 (350)
|++.+++.|+++|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++.+ +||+.|++.++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 677899999999999999999999999999999999877666 8889999999999998866 899999988877
Q ss_pred HHHHHHHHh
Q 018767 75 CVLLLVGLC 83 (350)
Q Consensus 75 ~~~~~~~~~ 83 (350)
.++..+...
T Consensus 188 ~~~~~~~~~ 196 (524)
T 2xut_A 188 MFVATVFFW 196 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.61 E-value=5.3e-15 Score=126.34 Aligned_cols=144 Identities=16% Similarity=-0.028 Sum_probs=111.0
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHhCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHHHHHH
Q 018767 154 SLMVLQQFVGINGIGFYTSETFVQAGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFLAGTS 231 (350)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 231 (350)
.+..+.............|.+.++.+.+..+ +......++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333456667778888889988877 77788889999999999999999999999999999888888776433
Q ss_pred HHhcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhHHHH
Q 018767 232 FFLKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFNFLM 306 (350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 306 (350)
...++ .+..++...+.+.+.+...... .+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 112 ~~~~~--------~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 112 AEIMN--------YTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccc--------HHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 3444555555555555544445 499999999999999999999999999999999999988
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=1.8e-15 Score=129.74 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHHHHHHHhCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHH
Q 018767 147 RSVIIGVSLMVLQQFVGINGIGFYTSETFVQAGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLG 224 (350)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 224 (350)
++.+....+..+.............|.+.++. .+..+ +......++..++.++.|+++||+|||+.+..+.++..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 33344444444444444455666777777777 66665 7778888999999999999999999999999999988888
Q ss_pred HHHHHHHHH-hcccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhH
Q 018767 225 CFLAGTSFF-LKGQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFN 303 (350)
Q Consensus 225 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~ 303 (350)
.++.+.... .++ .+..++...+.+.+.+...... .+++.|.+|+++|+++.++.+....+|..++|.+.+
T Consensus 106 ~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 106 MLFMGFVPWATSS--------IAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHCHHHHSS--------SSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHhhhhcccc--------HHHHHHHHHHHHHHhhhccchH-HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 887755211 111 2344444445554544444444 499999999999999999999999999999999999
Q ss_pred HHHhh-h-ccchhhHHHHhhHHHhhheeeecccCC
Q 018767 304 FLMSW-S-SSGTFFIYSAFSVITVLFVAKFVPETK 336 (350)
Q Consensus 304 ~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (350)
.+.+. + +...+++.+++..+..++.+++.||++
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 87765 4 555666666666666555555566543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.57 E-value=2.4e-14 Score=119.73 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=121.0
Q ss_pred chhhhhhHHHHHHHhCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHHHHHHHHhccccccc
Q 018767 164 INGIGFYTSETFVQAGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFLAGTSFFLKGQNMFL 241 (350)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (350)
........|.+.++.+.+..+ .......++..++.++.|+++||+|||+.+..+..+..++.+.......
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------- 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS-------- 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------
Confidence 444555667777888888766 6778888999999999999999999999999999988888877755421
Q ss_pred CchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhHHHHhh-hccchhhHHHHh
Q 018767 242 DWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFNFLMSW-SSSGTFFIYSAF 320 (350)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~ 320 (350)
.+..+....+.+.+.+.. .+...+++.|.+|+++|+++.+..+....+|..++|.+.+.+.+. ++...+.+.++.
T Consensus 88 ---~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 88 ---LTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 233344444444444433 344458999999999999999999999999999999999988776 445556666666
Q ss_pred hHHHhhheeeecccCCC
Q 018767 321 SVITVLFVAKFVPETKG 337 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (350)
..+..+...+..||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHCcccCC
Confidence 66666656666776543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=1.3e-13 Score=119.46 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=100.4
Q ss_pred hCCCCch--HHHHHHHHHhhhHHhhHhhhhcc-cCCceeehhhhHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHH
Q 018767 178 AGLSSGK--LGTILYACVQVPITVVGAFLMDK-SGRRPLIMISAAGTFLGCFLAGTSFFLKGQNMFLDWVPVLAVGGILI 254 (350)
Q Consensus 178 ~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (350)
.+.+..+ .......++..++.++.|+++|| +|||+++..+.++..++.++... .++ .+.......+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~l 117 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---PFG--------ASALFGSIIL 117 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---CCS--------TTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---hhh--------HHHHHHHHHH
Confidence 6777665 77788889999999999999999 89999999998888887776632 111 2334444444
Q ss_pred HHHHHhhcccchhhhhhcccCCcch--hhhHhHHHHHHHHHHHHHHHHHhHHHHhh-hccchhhHHHHhhHHHhh
Q 018767 255 YIAFFSIGFGAVPWVIMSEIFPINI--KGVAGSLVVLVNWSGAWAVSYTFNFLMSW-SSSGTFFIYSAFSVITVL 326 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 326 (350)
.+.+.+...... .+++.|.+|++. |+.+.+..+....+|..++|.+.+.+.+. ++...+.+.++...+..+
T Consensus 118 ~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 118 IIIGTGFLKPNV-STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHH-HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchH-HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 454444444444 499999999988 77888889999999999999999999886 444455554444443333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.41 E-value=2.1e-12 Score=112.90 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=104.1
Q ss_pred hhhhhHHH-HHHHhC------CCCch--HHHHHHHHHhhhHHhhHhhhhccc-CCceeehhhhHHHHHHHHHHHHHHHhc
Q 018767 166 GIGFYTSE-TFVQAG------LSSGK--LGTILYACVQVPITVVGAFLMDKS-GRRPLIMISAAGTFLGCFLAGTSFFLK 235 (350)
Q Consensus 166 ~~~~~~~~-~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~ 235 (350)
....+.+. +.++.+ .+..+ .......++..++.++.|+++||+ |||+.+..+.++..++.++..... .
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~ 107 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--H 107 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--S
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--c
Confidence 33444444 445567 66665 777788889999999999999999 999999988888877776664321 0
Q ss_pred ccccccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCcchhhhHhHH---HHHHHHHHHHHHHHHhHHHHhh-hcc
Q 018767 236 GQNMFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPINIKGVAGSL---VVLVNWSGAWAVSYTFNFLMSW-SSS 311 (350)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~-~~~ 311 (350)
+ .+..+....+.+.+.+... +...+++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+. ++.
T Consensus 108 ~--------~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (524)
T 2xut_A 108 S--------VQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAA 178 (524)
T ss_dssp C--------HHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHH
T ss_pred c--------HHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 1 3344444444444444443 4445999999999999776666 8888999999999999998875 444
Q ss_pred chhhHHHHhhHHHhh
Q 018767 312 GTFFIYSAFSVITVL 326 (350)
Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (350)
..+.+.+++.++..+
T Consensus 179 ~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 179 VAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555544444333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.34 E-value=1.4e-11 Score=106.70 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHHHHHHHHhcccc-------cccCchhHHHHHHHHHHHH
Q 018767 185 LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFLAGTSFFLKGQN-------MFLDWVPVLAVGGILIYIA 257 (350)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 257 (350)
+..+...++.++|+++.|+++||+|||+.+.++.+++.++.++.++........ ..........++.-.+.+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 445566788899999999999999999999999999888888775321100000 0000002344444455554
Q ss_pred HHhhcccchhhhhhcccCCcchhhhHhHHHHHHHHHHHHHHHHHhHHHHhhh--------ccchhhHHHHhhHHHhhhee
Q 018767 258 FFSIGFGAVPWVIMSEIFPINIKGVAGSLVVLVNWSGAWAVSYTFNFLMSWS--------SSGTFFIYSAFSVITVLFVA 329 (350)
Q Consensus 258 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~ 329 (350)
+.+... +....++.|..|++.|+...++.+....+|..+++.+........ .+........+..+..++..
T Consensus 139 g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 444444 444499999999999999999999999999988888776655431 12222333333333444445
Q ss_pred eecccC
Q 018767 330 KFVPET 335 (350)
Q Consensus 330 ~~~~~~ 335 (350)
++.||+
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 566775
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.07 E-value=3.6e-11 Score=101.85 Aligned_cols=146 Identities=10% Similarity=0.006 Sum_probs=82.2
Q ss_pred hhhhhhHHHHHH-HhCCCCch--HHHHHHHHHhhhHHhhHhhhhcccCCceeehhhhHHHHHHHHHH---HHHHHhcccc
Q 018767 165 NGIGFYTSETFV-QAGLSSGK--LGTILYACVQVPITVVGAFLMDKSGRRPLIMISAAGTFLGCFLA---GTSFFLKGQN 238 (350)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 238 (350)
.....+.|.+.+ +.+.+..+ .......++..+++++.|+++||+|||+++.++..+..+....+ .........
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN- 102 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334455666554 47877766 77788889999999999999999999999887766554322111 111000000
Q ss_pred cccCchhHHHHHHHHHHHHHHhhcccchhhhhhcccCCc--chhhhHhHHHHHHHHHHHHHHHHHhHHHHhhhccchhhH
Q 018767 239 MFLDWVPVLAVGGILIYIAFFSIGFGAVPWVIMSEIFPI--NIKGVAGSLVVLVNWSGAWAVSYTFNFLMSWSSSGTFFI 316 (350)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 316 (350)
.. ..........+....+.. ....+..++ +.++.+.+..+....+|..++|.+.+.+.+.++...+++
T Consensus 103 ------~~---~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~ 172 (417)
T 2cfq_A 103 ------IL---VGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWL 172 (417)
T ss_dssp ------CC---HHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTT
T ss_pred ------HH---HHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 00 000000000111111111 222222222 345667777777788899999999998887655555554
Q ss_pred HHHhh
Q 018767 317 YSAFS 321 (350)
Q Consensus 317 ~~~~~ 321 (350)
.++..
T Consensus 173 ~~~~~ 177 (417)
T 2cfq_A 173 GSGCA 177 (417)
T ss_dssp TTTTT
T ss_pred HHHHH
Confidence 44443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=55.79 E-value=2.6 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.0
Q ss_pred hHhhhhcccCCce
Q 018767 200 VGAFLMDKSGRRP 212 (350)
Q Consensus 200 ~~g~l~d~~grr~ 212 (350)
+.|.+..++|||.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 3578888999984
No 16
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.23 E-value=2.3e+02 Score=23.51 Aligned_cols=16 Identities=0% Similarity=-0.004 Sum_probs=6.2
Q ss_pred HhhHHHhhheeeeccc
Q 018767 319 AFSVITVLFVAKFVPE 334 (350)
Q Consensus 319 ~~~~~~~~~~~~~~~~ 334 (350)
....+.++..+.+.++
T Consensus 414 ~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 414 FVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333434444333
No 17
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=30.74 E-value=56 Score=18.08 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=22.4
Q ss_pred cccCccchhhHHhHHHHHHHHHHHHHHHhcCCchhhHHH
Q 018767 30 EIAPRNLRGLLTTLNQLLIVTGSSVAYIIGSIIPWRILA 68 (350)
Q Consensus 30 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~Wr~~f 68 (350)
....+++...+..+.-.....|...+-.+..+.+||.++
T Consensus 4 ~~~g~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~IL 42 (56)
T 2fyu_K 4 RFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLIL 42 (56)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ccccHhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHHH
Confidence 344556666666666666666655555554455676543
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.29 E-value=58 Score=15.51 Aligned_cols=11 Identities=36% Similarity=0.458 Sum_probs=7.0
Q ss_pred HHHhccCCChH
Q 018767 80 VGLCFVPESPR 90 (350)
Q Consensus 80 ~~~~~~~esp~ 90 (350)
....+.+|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34456788885
Done!