Query 018768
Match_columns 350
No_of_seqs 286 out of 1449
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03212 Transcription repress 100.0 5.7E-31 1.2E-35 244.7 11.3 114 3-118 24-137 (249)
2 KOG0048 Transcription factor, 100.0 9.8E-31 2.1E-35 245.6 11.5 107 4-112 9-115 (238)
3 PLN03091 hypothetical protein; 100.0 2.2E-29 4.8E-34 249.3 12.6 109 3-113 13-121 (459)
4 KOG0049 Transcription factor, 99.7 2.6E-17 5.6E-22 168.6 8.6 99 3-104 359-458 (939)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.7 2.5E-16 5.5E-21 117.1 7.0 60 7-70 1-60 (60)
6 KOG0049 Transcription factor, 99.6 2.4E-16 5.2E-21 161.6 8.6 109 4-115 305-417 (939)
7 KOG0050 mRNA splicing protein 99.5 5.3E-15 1.1E-19 148.9 6.2 107 1-111 4-110 (617)
8 COG5147 REB1 Myb superfamily p 99.5 2.1E-14 4.5E-19 147.0 7.3 105 2-109 18-122 (512)
9 KOG0051 RNA polymerase I termi 99.4 3E-13 6.6E-18 139.8 8.8 103 3-110 383-513 (607)
10 PF00249 Myb_DNA-binding: Myb- 99.4 4.7E-13 1E-17 95.6 4.6 48 4-53 1-48 (48)
11 PF00249 Myb_DNA-binding: Myb- 99.3 2.6E-12 5.7E-17 91.7 3.9 46 59-104 1-48 (48)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.1 4.4E-11 9.5E-16 88.8 2.7 45 62-106 1-45 (60)
13 smart00717 SANT SANT SWI3, AD 99.1 1.9E-10 4.1E-15 80.0 4.6 47 59-105 1-48 (49)
14 smart00717 SANT SANT SWI3, AD 99.1 3.1E-10 6.8E-15 78.9 5.5 48 4-54 1-48 (49)
15 PLN03212 Transcription repress 99.0 4.7E-10 1E-14 105.3 6.8 58 54-111 20-79 (249)
16 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.1E-09 2.4E-14 75.0 4.6 43 61-103 1-44 (45)
17 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 2.2E-09 4.9E-14 73.5 5.1 45 6-53 1-45 (45)
18 KOG0048 Transcription factor, 98.9 1.3E-09 2.8E-14 102.7 3.6 62 55-116 5-68 (238)
19 PLN03091 hypothetical protein; 98.8 3.6E-09 7.8E-14 106.2 5.7 59 53-111 8-68 (459)
20 KOG0051 RNA polymerase I termi 98.8 1.7E-08 3.8E-13 104.9 8.2 124 5-138 309-456 (607)
21 COG5147 REB1 Myb superfamily p 98.4 7.4E-08 1.6E-12 99.3 -0.1 100 1-105 288-397 (512)
22 TIGR01557 myb_SHAQKYF myb-like 98.0 1.3E-05 2.8E-10 59.7 5.5 50 2-53 1-54 (57)
23 KOG0457 Histone acetyltransfer 97.6 6E-05 1.3E-09 75.9 4.5 47 4-53 72-118 (438)
24 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00051 1.1E-08 51.2 5.0 47 59-105 3-55 (57)
25 TIGR02894 DNA_bind_RsfA transc 97.2 0.00033 7.2E-09 62.3 4.2 52 58-110 3-61 (161)
26 KOG0457 Histone acetyltransfer 97.2 0.00047 1E-08 69.6 5.0 50 56-105 69-119 (438)
27 PF13325 MCRS_N: N-terminal re 97.1 0.0019 4.2E-08 59.5 8.3 101 6-108 1-130 (199)
28 COG5259 RSC8 RSC chromatin rem 97.0 0.00077 1.7E-08 68.6 4.5 45 4-52 279-323 (531)
29 PF13837 Myb_DNA-bind_4: Myb/S 96.9 0.00074 1.6E-08 53.4 2.8 49 4-52 1-63 (90)
30 KOG1279 Chromatin remodeling f 96.8 0.0013 2.7E-08 68.5 4.7 46 3-52 252-297 (506)
31 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.00085 1.8E-08 53.0 2.7 53 60-112 2-72 (90)
32 KOG0050 mRNA splicing protein 96.7 0.0011 2.4E-08 68.1 3.2 55 57-111 5-60 (617)
33 KOG4282 Transcription factor G 96.4 0.57 1.2E-05 46.4 19.9 55 60-114 55-123 (345)
34 PF08914 Myb_DNA-bind_2: Rap1 96.3 0.0035 7.6E-08 47.9 2.8 52 4-57 2-61 (65)
35 COG5114 Histone acetyltransfer 96.2 0.007 1.5E-07 59.2 5.2 47 59-105 63-110 (432)
36 KOG1279 Chromatin remodeling f 96.2 0.0049 1.1E-07 64.2 4.5 45 59-103 253-297 (506)
37 PF13873 Myb_DNA-bind_5: Myb/S 96.2 0.0047 1E-07 47.9 3.2 51 3-53 1-69 (78)
38 PRK13923 putative spore coat p 96.2 0.0043 9.4E-08 55.9 3.3 51 58-109 4-61 (170)
39 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0081 1.8E-07 45.9 3.9 50 59-108 2-61 (65)
40 TIGR02894 DNA_bind_RsfA transc 95.9 0.0038 8.3E-08 55.6 1.8 49 3-55 3-57 (161)
41 COG5259 RSC8 RSC chromatin rem 95.9 0.0067 1.5E-07 61.9 3.6 46 58-103 278-323 (531)
42 PF13873 Myb_DNA-bind_5: Myb/S 95.8 0.017 3.6E-07 44.8 4.7 51 59-109 2-74 (78)
43 COG5114 Histone acetyltransfer 95.0 0.019 4.1E-07 56.3 3.1 46 6-54 65-110 (432)
44 PLN03142 Probable chromatin-re 94.7 0.21 4.5E-06 56.6 10.6 102 6-110 826-990 (1033)
45 COG5118 BDP1 Transcription ini 94.5 0.1 2.2E-06 52.3 6.9 72 60-131 366-437 (507)
46 PRK13923 putative spore coat p 94.4 0.032 6.9E-07 50.4 3.0 48 3-54 4-57 (170)
47 KOG2656 DNA methyltransferase 93.3 0.2 4.4E-06 50.4 6.5 55 60-114 131-191 (445)
48 PF04696 Pinin_SDK_memA: pinin 92.3 1.2 2.5E-05 38.6 9.1 25 312-336 77-101 (131)
49 KOG3841 TEF-1 and related tran 91.6 1.2 2.6E-05 44.9 9.3 83 57-140 74-177 (455)
50 PF09111 SLIDE: SLIDE; InterP 91.0 0.31 6.6E-06 41.6 4.0 53 56-108 46-114 (118)
51 PF12776 Myb_DNA-bind_3: Myb/S 90.8 0.45 9.8E-06 37.8 4.7 49 61-109 1-67 (96)
52 KOG4167 Predicted DNA-binding 85.8 7 0.00015 42.7 10.7 43 5-51 620-662 (907)
53 KOG4282 Transcription factor G 82.6 1.8 3.8E-05 42.9 4.6 48 5-52 55-112 (345)
54 KOG1194 Predicted DNA-binding 82.3 5.2 0.00011 41.4 7.7 51 58-108 186-236 (534)
55 PF11626 Rap1_C: TRF2-interact 81.4 1.7 3.8E-05 34.7 3.3 28 4-34 47-82 (87)
56 PF12776 Myb_DNA-bind_3: Myb/S 81.0 2.7 5.7E-05 33.3 4.3 46 6-51 1-60 (96)
57 PF09111 SLIDE: SLIDE; InterP 78.3 2.7 5.8E-05 35.9 3.6 48 3-50 48-107 (118)
58 COG5118 BDP1 Transcription ini 77.9 2.9 6.2E-05 42.3 4.2 44 5-52 366-409 (507)
59 PF08514 STAG: STAG domain ; 76.2 4.5 9.7E-05 34.3 4.4 44 228-285 72-117 (118)
60 PF08281 Sigma70_r4_2: Sigma-7 75.4 5.6 0.00012 28.1 4.2 42 64-106 12-53 (54)
61 PF13404 HTH_AsnC-type: AsnC-t 73.7 6.6 0.00014 27.2 4.0 38 10-51 3-40 (42)
62 PF11035 SnAPC_2_like: Small n 70.2 64 0.0014 32.2 11.2 51 60-110 22-76 (344)
63 PF14738 PaaSYMP: Solute carri 70.2 80 0.0017 28.1 13.8 131 190-338 10-144 (154)
64 smart00502 BBC B-Box C-termina 68.7 60 0.0013 26.1 11.2 54 269-322 36-90 (127)
65 KOG1924 RhoA GTPase effector D 68.7 86 0.0019 35.1 12.7 16 90-105 414-429 (1102)
66 KOG2391 Vacuolar sorting prote 68.6 1.2E+02 0.0026 30.6 12.8 23 266-288 233-255 (365)
67 KOG3654 Uncharacterized CH dom 67.1 13 0.00029 39.0 6.1 44 259-303 408-451 (708)
68 PRK11637 AmiB activator; Provi 65.8 1.3E+02 0.0027 30.7 13.1 21 293-313 236-256 (428)
69 PF12128 DUF3584: Protein of u 64.2 1.4E+02 0.0031 34.8 14.5 101 226-326 343-446 (1201)
70 TIGR01069 mutS2 MutS2 family p 64.1 53 0.0011 36.5 10.5 45 278-322 546-590 (771)
71 PRK11179 DNA-binding transcrip 63.7 13 0.00027 32.5 4.7 53 2-59 2-54 (153)
72 KOG4167 Predicted DNA-binding 61.0 12 0.00025 41.1 4.6 47 60-106 620-666 (907)
73 TIGR01541 tape_meas_lam_C phag 60.4 1.3E+02 0.0029 30.0 11.7 28 288-315 81-108 (332)
74 PRK11169 leucine-responsive tr 59.2 9.8 0.00021 33.6 3.2 47 9-59 13-59 (164)
75 PF03179 V-ATPase_G: Vacuolar 59.1 70 0.0015 26.0 8.1 44 278-321 51-94 (105)
76 KOG3756 Pinin (desmosome-assoc 58.2 96 0.0021 30.9 9.9 21 316-336 213-233 (340)
77 PRK06228 F0F1 ATP synthase sub 58.0 25 0.00055 30.4 5.5 32 274-312 100-131 (131)
78 KOG2009 Transcription initiati 56.6 16 0.00034 39.2 4.6 50 58-107 408-457 (584)
79 PF09731 Mitofilin: Mitochondr 56.4 2.7E+02 0.0058 29.5 14.3 47 285-331 310-357 (582)
80 PF11626 Rap1_C: TRF2-interact 56.4 11 0.00023 30.1 2.7 17 55-71 43-59 (87)
81 smart00595 MADF subfamily of S 56.1 12 0.00025 29.2 2.9 29 81-110 30-58 (89)
82 PF10186 Atg14: UV radiation r 55.7 1.6E+02 0.0034 27.8 11.1 13 321-333 139-151 (302)
83 PRK02224 chromosome segregatio 54.9 2.8E+02 0.0061 30.8 14.4 28 239-266 472-499 (880)
84 KOG4329 DNA-binding protein [G 54.7 44 0.00095 34.0 7.1 47 60-106 278-325 (445)
85 PF01527 HTH_Tnp_1: Transposas 54.4 18 0.00038 27.2 3.5 47 1-53 1-47 (76)
86 PF03179 V-ATPase_G: Vacuolar 54.4 1.2E+02 0.0025 24.7 8.7 70 268-337 26-99 (105)
87 PF04504 DUF573: Protein of un 54.4 49 0.0011 27.1 6.3 63 60-122 5-80 (98)
88 PF05700 BCAS2: Breast carcino 54.2 75 0.0016 29.6 8.4 61 242-307 129-189 (221)
89 PF08703 PLC-beta_C: PLC-beta 52.9 41 0.0009 30.9 6.2 27 283-309 135-161 (185)
90 PF15397 DUF4618: Domain of un 51.9 2.3E+02 0.0051 27.4 12.5 92 238-329 63-174 (258)
91 KOG0250 DNA repair protein RAD 51.8 1.5E+02 0.0032 34.3 11.3 47 268-315 309-355 (1074)
92 PF13404 HTH_AsnC-type: AsnC-t 51.4 22 0.00049 24.5 3.3 38 65-103 3-41 (42)
93 KOG2412 Nuclear-export-signal 50.9 69 0.0015 34.2 8.1 58 262-323 228-288 (591)
94 PF13325 MCRS_N: N-terminal re 50.9 21 0.00045 33.3 4.0 45 61-106 1-48 (199)
95 KOG4468 Polycomb-group transcr 50.3 23 0.0005 38.0 4.6 49 4-53 88-143 (782)
96 PF04545 Sigma70_r4: Sigma-70, 49.9 35 0.00076 23.7 4.2 42 65-107 7-48 (50)
97 COG4942 Membrane-bound metallo 48.7 3.3E+02 0.0072 28.3 12.9 92 230-321 145-241 (420)
98 PF12808 Mto2_bdg: Micro-tubul 47.4 48 0.001 24.4 4.6 16 257-272 5-20 (52)
99 PF13801 Metal_resist: Heavy-m 46.7 38 0.00083 27.0 4.6 67 256-326 33-99 (125)
100 KOG0384 Chromodomain-helicase 46.5 25 0.00055 40.8 4.5 70 6-84 1135-1205(1373)
101 KOG4468 Polycomb-group transcr 46.0 30 0.00066 37.2 4.7 52 59-110 88-149 (782)
102 PRK00409 recombination and DNA 45.8 1.5E+02 0.0032 33.1 10.3 34 280-313 553-586 (782)
103 KOG1194 Predicted DNA-binding 45.4 29 0.00064 36.1 4.4 43 5-51 188-230 (534)
104 PRK08476 F0F1 ATP synthase sub 45.1 1.6E+02 0.0035 25.4 8.5 41 295-335 83-123 (141)
105 PF01388 ARID: ARID/BRIGHT DNA 43.8 42 0.00091 26.4 4.3 41 14-54 40-89 (92)
106 PF05266 DUF724: Protein of un 43.7 1.6E+02 0.0035 27.0 8.7 93 228-321 69-176 (190)
107 PF12737 Mating_C: C-terminal 43.6 24 0.00051 36.5 3.5 24 266-290 394-417 (419)
108 PRK10884 SH3 domain-containing 43.3 1E+02 0.0022 28.7 7.4 81 242-330 74-172 (206)
109 PHA02675 ORF104 fusion protein 42.8 58 0.0013 26.3 4.8 37 229-284 45-81 (90)
110 PF07227 DUF1423: Protein of u 42.6 61 0.0013 33.7 6.2 28 295-322 391-419 (446)
111 KOG2656 DNA methyltransferase 42.6 18 0.00038 37.0 2.3 46 5-53 131-181 (445)
112 PF06886 TPX2: Targeting prote 42.0 99 0.0021 22.9 5.7 41 251-291 10-50 (57)
113 smart00595 MADF subfamily of S 41.6 18 0.00039 28.1 1.8 23 26-52 29-51 (89)
114 PF09197 Rap1-DNA-bind: Rap1, 41.0 41 0.0009 28.2 3.9 46 6-54 1-76 (105)
115 TIGR02985 Sig70_bacteroi1 RNA 40.5 55 0.0012 27.3 4.8 40 68-108 119-158 (161)
116 PRK11179 DNA-binding transcrip 39.8 47 0.001 28.9 4.4 43 65-108 9-52 (153)
117 PF10545 MADF_DNA_bdg: Alcohol 39.6 28 0.00061 26.2 2.6 32 81-112 29-61 (85)
118 KOG0163 Myosin class VI heavy 39.3 2.4E+02 0.0052 31.7 10.1 7 79-85 790-796 (1259)
119 smart00501 BRIGHT BRIGHT, ARID 38.6 29 0.00063 27.6 2.6 42 14-55 36-86 (93)
120 PF07227 DUF1423: Protein of u 37.5 1.2E+02 0.0026 31.6 7.4 57 274-331 349-405 (446)
121 PLN03142 Probable chromatin-re 36.0 45 0.00097 38.4 4.4 48 3-50 925-981 (1033)
122 PLN02372 violaxanthin de-epoxi 34.8 4.5E+02 0.0098 27.4 10.8 34 280-313 408-441 (455)
123 PF07638 Sigma70_ECF: ECF sigm 34.6 70 0.0015 28.5 4.8 42 67-109 140-181 (185)
124 KOG4329 DNA-binding protein [G 34.5 48 0.001 33.7 3.9 42 6-51 279-321 (445)
125 PF10545 MADF_DNA_bdg: Alcohol 34.4 26 0.00057 26.4 1.7 25 26-52 28-52 (85)
126 PLN00180 NDF6 (NDH-dependent f 33.5 62 0.0013 29.1 4.0 28 266-293 149-177 (180)
127 PF08281 Sigma70_r4_2: Sigma-7 33.4 60 0.0013 22.7 3.3 38 9-51 12-49 (54)
128 PF04795 PAPA-1: PAPA-1-like c 33.4 59 0.0013 26.2 3.6 27 266-298 6-32 (89)
129 PF15070 GOLGA2L5: Putative go 33.0 2.1E+02 0.0047 31.1 8.8 41 276-317 95-135 (617)
130 PRK13729 conjugal transfer pil 32.7 94 0.002 32.7 5.8 14 257-270 77-90 (475)
131 smart00344 HTH_ASNC helix_turn 32.3 75 0.0016 25.4 4.2 44 10-57 3-46 (108)
132 KOG0981 DNA topoisomerase I [R 32.3 89 0.0019 33.7 5.5 109 226-341 560-698 (759)
133 PF05178 Kri1: KRI1-like famil 32.2 1.1E+02 0.0023 25.4 5.0 33 260-292 6-38 (101)
134 PF03938 OmpH: Outer membrane 32.1 3.2E+02 0.007 23.3 10.0 45 292-339 82-126 (158)
135 PF15188 CCDC-167: Coiled-coil 31.9 55 0.0012 26.4 3.2 22 290-311 43-64 (85)
136 cd07653 F-BAR_CIP4-like The F- 31.6 4.3E+02 0.0092 24.5 10.8 82 229-310 92-192 (251)
137 PRK11169 leucine-responsive tr 31.2 64 0.0014 28.4 3.9 44 64-108 13-57 (164)
138 PF09726 Macoilin: Transmembra 31.2 6.8E+02 0.015 27.7 12.4 21 300-320 548-568 (697)
139 TIGR01069 mutS2 MutS2 family p 30.8 4.9E+02 0.011 29.0 11.4 26 286-311 565-590 (771)
140 COG1522 Lrp Transcriptional re 30.8 62 0.0013 27.5 3.6 47 10-60 8-54 (154)
141 PF03791 KNOX2: KNOX2 domain ; 29.8 1.3E+02 0.0027 22.1 4.5 34 234-267 16-49 (52)
142 PRK11637 AmiB activator; Provi 29.4 5.9E+02 0.013 25.9 11.0 43 280-322 206-251 (428)
143 KOG4577 Transcription factor L 28.8 2.6E+02 0.0056 27.8 7.7 14 97-110 231-244 (383)
144 PRK09413 IS2 repressor TnpA; R 28.7 2.9E+02 0.0063 23.0 7.3 46 2-53 8-53 (121)
145 KOG1924 RhoA GTPase effector D 28.6 2.5E+02 0.0054 31.7 8.2 11 83-93 431-441 (1102)
146 TIGR02937 sigma70-ECF RNA poly 28.3 1E+02 0.0022 24.8 4.5 38 70-108 118-155 (158)
147 KOG4364 Chromatin assembly fac 28.2 3E+02 0.0065 30.4 8.6 79 259-339 304-383 (811)
148 PF14357 DUF4404: Domain of un 27.9 1.5E+02 0.0032 23.6 5.1 53 286-339 18-77 (85)
149 PF09304 Cortex-I_coil: Cortex 27.8 3.7E+02 0.0081 22.7 9.8 53 245-298 5-60 (107)
150 PF02954 HTH_8: Bacterial regu 27.6 1.3E+02 0.0029 20.3 4.2 34 10-48 5-38 (42)
151 PF01486 K-box: K-box region; 27.5 1.3E+02 0.0027 24.3 4.7 63 229-291 20-84 (100)
152 PRK14471 F0F1 ATP synthase sub 27.3 4.2E+02 0.0091 23.1 8.8 15 251-265 55-69 (164)
153 cd08319 Death_RAIDD Death doma 27.1 62 0.0013 25.8 2.7 29 67-96 2-30 (83)
154 PF09420 Nop16: Ribosome bioge 27.0 97 0.0021 27.5 4.3 47 58-104 113-163 (164)
155 COG5602 SIN3 Histone deacetyla 26.9 1.1E+02 0.0024 34.7 5.3 102 95-196 147-252 (1163)
156 KOG1937 Uncharacterized conser 26.8 5.8E+02 0.013 26.9 10.1 67 224-290 291-360 (521)
157 PRK10203 hypothetical protein; 26.7 2.4E+02 0.0052 24.2 6.4 35 269-307 82-116 (122)
158 KOG1029 Endocytic adaptor prot 26.6 9.9E+02 0.022 27.2 16.1 22 233-254 322-344 (1118)
159 cd06171 Sigma70_r4 Sigma70, re 26.4 1.3E+02 0.0028 19.7 4.0 38 67-105 15-52 (55)
160 PF09726 Macoilin: Transmembra 26.2 2.1E+02 0.0046 31.6 7.4 13 261-273 507-519 (697)
161 PRK00409 recombination and DNA 26.0 6.8E+02 0.015 28.0 11.4 75 235-311 520-595 (782)
162 KOG0971 Microtubule-associated 26.0 1.1E+03 0.023 27.4 16.9 41 222-262 218-258 (1243)
163 PF07750 GcrA: GcrA cell cycle 25.9 70 0.0015 28.6 3.1 39 61-100 2-40 (162)
164 PF05300 DUF737: Protein of un 25.6 3.1E+02 0.0066 25.3 7.3 18 293-310 144-161 (187)
165 PRK11519 tyrosine kinase; Prov 25.4 2.7E+02 0.0057 30.6 8.1 75 254-338 265-348 (719)
166 PRK09841 cryptic autophosphory 25.1 6E+02 0.013 27.9 10.8 25 292-320 362-386 (726)
167 COG2963 Transposase and inacti 24.8 1.6E+02 0.0035 24.0 4.9 48 59-107 5-53 (116)
168 PRK04217 hypothetical protein; 24.8 1.2E+02 0.0027 25.4 4.2 46 61-108 42-87 (110)
169 KOG3859 Septins (P-loop GTPase 24.8 4.6E+02 0.01 26.3 8.6 66 233-298 332-400 (406)
170 PRK13824 replication initiatio 24.2 3.4E+02 0.0074 27.9 8.1 77 229-317 140-217 (404)
171 TIGR03007 pepcterm_ChnLen poly 24.1 7.9E+02 0.017 25.2 11.1 14 306-319 357-370 (498)
172 KOG3837 Uncharacterized conser 24.1 5.3E+02 0.012 27.0 9.3 14 325-338 231-244 (523)
173 PHA03369 capsid maturational p 23.8 9.8E+02 0.021 26.2 11.8 11 282-292 483-493 (663)
174 PF04504 DUF573: Protein of un 23.8 2.9E+02 0.0063 22.5 6.2 71 5-76 5-94 (98)
175 PF09905 DUF2132: Uncharacteri 23.4 85 0.0018 24.0 2.7 21 12-35 12-32 (64)
176 PRK09652 RNA polymerase sigma 23.4 1.5E+02 0.0032 25.3 4.7 34 75-109 141-174 (182)
177 PF11166 DUF2951: Protein of u 23.4 3.8E+02 0.0083 22.2 6.6 55 251-318 6-60 (98)
178 PF08663 HalX: HalX domain; I 23.3 1.1E+02 0.0025 23.7 3.5 41 264-304 22-66 (71)
179 PF01099 Uteroglobin: Uteroglo 23.2 1.4E+02 0.0031 22.4 4.0 36 286-321 3-38 (67)
180 COG1340 Uncharacterized archae 23.1 5.7E+02 0.012 25.3 9.0 45 270-314 153-203 (294)
181 KOG4643 Uncharacterized coiled 23.0 2.2E+02 0.0047 32.9 6.7 39 258-296 186-226 (1195)
182 smart00830 CM_2 Chorismate mut 22.7 2.7E+02 0.0057 20.9 5.5 54 274-329 1-54 (79)
183 PF04111 APG6: Autophagy prote 22.6 5.5E+02 0.012 25.3 9.0 20 295-314 90-109 (314)
184 PRK11098 microcin B17 transpor 22.4 1E+02 0.0023 31.7 4.0 24 296-319 276-299 (409)
185 PF07352 Phage_Mu_Gam: Bacteri 22.0 5.1E+02 0.011 22.4 7.8 59 277-336 2-60 (149)
186 cd08803 Death_ank3 Death domai 22.0 98 0.0021 24.6 3.0 29 67-96 4-32 (84)
187 PF07750 GcrA: GcrA cell cycle 21.9 1.1E+02 0.0025 27.3 3.7 34 6-42 2-35 (162)
188 PRK11924 RNA polymerase sigma 21.6 1.6E+02 0.0035 24.9 4.6 31 77-108 140-170 (179)
189 PRK09643 RNA polymerase sigma 21.1 2.3E+02 0.005 25.1 5.6 33 76-109 148-180 (192)
190 PRK04778 septation ring format 21.0 7.6E+02 0.016 26.3 10.3 86 225-311 345-432 (569)
191 PF00170 bZIP_1: bZIP transcri 21.0 3.4E+02 0.0075 19.9 7.5 54 255-309 4-59 (64)
192 PF10376 Mei5: Double-strand r 20.8 7.1E+02 0.015 23.4 9.7 56 271-345 163-218 (221)
193 PF12128 DUF3584: Protein of u 20.7 1.4E+03 0.03 26.8 14.8 18 59-76 460-477 (1201)
194 KOG2891 Surface glycoprotein [ 20.6 8.4E+02 0.018 24.2 12.0 94 227-328 267-371 (445)
195 PF04719 TAFII28: hTAFII28-lik 20.6 83 0.0018 25.6 2.3 31 228-258 56-90 (90)
196 KOG4593 Mitotic checkpoint pro 20.5 1.1E+03 0.024 26.2 11.1 63 259-322 79-144 (716)
197 PF10440 WIYLD: Ubiquitin-bind 20.1 68 0.0015 24.6 1.6 18 69-86 31-48 (65)
198 smart00502 BBC B-Box C-termina 20.1 4.5E+02 0.0098 20.8 11.1 21 303-323 60-80 (127)
No 1
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=5.7e-31 Score=244.69 Aligned_cols=114 Identities=33% Similarity=0.700 Sum_probs=104.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
+|++||+|||++|+++|++||..+|..||+.|+. +|+++||++||.|||+|++++++||.|||++|++++..||++|.
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~--gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs 101 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGL--LRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWS 101 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhc--CCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHH
Confidence 6899999999999999999999999999999852 79999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCC
Q 018768 83 KIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIV 118 (350)
Q Consensus 83 ~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~ 118 (350)
.||+.|||||+++|||||+.++++............
T Consensus 102 ~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~ 137 (249)
T PLN03212 102 LIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH 137 (249)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence 999999999999999999999998876544333333
No 2
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=9.8e-31 Score=245.57 Aligned_cols=107 Identities=35% Similarity=0.675 Sum_probs=102.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKK 83 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~~ 83 (350)
||+||+|||++|+++|.+||.++|..|++.++ ++|++++||.||.|||+|++++|.||+|||.+||+++..||++|+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--LRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--CCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 59999999999999999999999999999988 4899999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHHHHHHHhhh
Q 018768 84 IAAEVPGRTAKRLGKWWEVFKEKQQREQK 112 (350)
Q Consensus 84 IA~~lpgRT~~q~rnRW~~~l~k~~~~~k 112 (350)
||++|||||++.|||+|++.++++.....
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999988876654
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=249.35 Aligned_cols=109 Identities=37% Similarity=0.740 Sum_probs=103.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWK 82 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W~ 82 (350)
+|++||+|||++|+++|.+||..+|..||+.++. +|+++|||+||.+||+|++++++||.|||.+|++++++||++|.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~--gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWs 90 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL--QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhcc--CcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchH
Confidence 6789999999999999999999999999998852 79999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhhHHHHHHHHHHHHHhhhc
Q 018768 83 KIAAEVPGRTAKRLGKWWEVFKEKQQREQKD 113 (350)
Q Consensus 83 ~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~ 113 (350)
.||++|+|||+++|||||+.+++++.+....
T Consensus 91 kIAk~LPGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998775433
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.70 E-value=2.6e-17 Score=168.62 Aligned_cols=99 Identities=30% Similarity=0.500 Sum_probs=91.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHG-NKW 81 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G-~~W 81 (350)
++|.||++||.+|..+|.+||.++|.+|-+.++ ||+..|||+||.|+|+...+++.||-.||..||.+|.+|| ++|
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP---nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~W 435 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP---NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNW 435 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC---CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchH
Confidence 689999999999999999999999999999999 8999999999999999999999999999999999999999 789
Q ss_pred hhhhhcCCCCChhhhHHHHHHHH
Q 018768 82 KKIAAEVPGRTAKRLGKWWEVFK 104 (350)
Q Consensus 82 ~~IA~~lpgRT~~q~rnRW~~~l 104 (350)
.+||.++|+||..|...|=..++
T Consensus 436 akcA~~Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 436 AKCAMLLPKKTSRQLRRRRLRLI 458 (939)
T ss_pred HHHHHHccccchhHHHHHHHHHH
Confidence 99999999999966544433333
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.65 E-value=2.5e-16 Score=117.13 Aligned_cols=60 Identities=42% Similarity=0.898 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHH
Q 018768 7 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLV 70 (350)
Q Consensus 7 WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~L 70 (350)
||+|||++|+.+|..|| .+|..||+.|+ +|++.||+.||+++|++.+++++||.+||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~---~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG---NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST---TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC---cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 68999999998 89999999999999999999999999999987
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.65 E-value=2.4e-16 Score=161.61 Aligned_cols=109 Identities=27% Similarity=0.498 Sum_probs=100.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCC---ChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 018768 4 RQRWRAEEDALLRAYVKQYGPK---EWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK 80 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~---~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~ 80 (350)
+..||.|||.+|+++|.....+ +|.+|-++|+ ||+..|...||...|+|++++|.||.+||.+|+.+|.+||.+
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp---gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k 381 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP---GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK 381 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC---CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence 4789999999999999988544 6999999999 999999999999999999999999999999999999999966
Q ss_pred -hhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhccc
Q 018768 81 -WKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSI 115 (350)
Q Consensus 81 -W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~ 115 (350)
|.+|-..||||++.|||.||.+.|....+....+.
T Consensus 382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l 417 (939)
T KOG0049|consen 382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTL 417 (939)
T ss_pred chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceee
Confidence 99999999999999999999999998876665543
No 7
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.3e-15 Score=148.85 Aligned_cols=107 Identities=29% Similarity=0.584 Sum_probs=101.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 018768 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNK 80 (350)
Q Consensus 1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~ 80 (350)
|.|-|-|+.-||+.|..+|.+||.+.|.+|++.++ ..+++||+.||..+|||.|++.-|+.+||.+|+.+...+...
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~---~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q 80 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN---RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ 80 (617)
T ss_pred EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh---hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc
Confidence 35678999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018768 81 WKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 81 W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
|..|+..| |||++||-.||+.++-......
T Consensus 81 wrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 81 WRTIADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred cchHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999987766543
No 8
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.51 E-value=2.1e-14 Score=146.96 Aligned_cols=105 Identities=30% Similarity=0.525 Sum_probs=100.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 018768 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKW 81 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~G~~W 81 (350)
++.|.|+..||+.|..+|++||+++|..||..+. .++++||+.||+++++|.++++.|+.+||..|+.+..++|+.|
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~---~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI---SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc---ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 3568999999999999999999999999999998 6999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018768 82 KKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 82 ~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
..||..+++||..+|.++|...+.....
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc
Confidence 9999999999999999999998887654
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.42 E-value=3e-13 Score=139.79 Aligned_cols=103 Identities=20% Similarity=0.488 Sum_probs=93.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC--CCCCCCHHHHHHHHHHHH-----
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI--KKGSLTDEEQHLVIHLQA----- 75 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i--~kg~WT~EED~~Li~lv~----- 75 (350)
+||+||+||++.|..+|.++| ++|..|+..|+ |.+..|++||++|..++- +++.||.+|..+|+++|+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg----r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~ 457 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG----RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIRE 457 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc----cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999 79999999997 999999999999999984 899999999999999996
Q ss_pred --Hh-------------------CCchhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018768 76 --KH-------------------GNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 76 --~~-------------------G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
++ +-+|..|+..+.+|+..||+.+|+.++......
T Consensus 458 ~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n 513 (607)
T KOG0051|consen 458 ALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN 513 (607)
T ss_pred hhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence 23 135999999999999999999999998876543
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.38 E-value=4.7e-13 Score=95.63 Aligned_cols=48 Identities=42% Similarity=0.776 Sum_probs=43.0
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
|++||+|||++|.++|.+||.++|..||..|+. +||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~--~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPG--GRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSS--SSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCC--CCCHHHHHHHHHhhC
Confidence 689999999999999999997779999999994 799999999999875
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.28 E-value=2.6e-12 Score=91.74 Aligned_cols=46 Identities=37% Similarity=0.638 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc-hhhhhhcCC-CCChhhhHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVFK 104 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~-W~~IA~~lp-gRT~~q~rnRW~~~l 104 (350)
+++||++||.+|++++.+||.+ |..||..|+ +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999999874
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.10 E-value=4.4e-11 Score=88.83 Aligned_cols=45 Identities=38% Similarity=0.598 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018768 62 LTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 62 WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
||.+||.+|+++|..||++|..||..|+.||+.+|++||...++.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence 999999999999999999999999999779999999999995543
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.06 E-value=1.9e-10 Score=80.01 Aligned_cols=47 Identities=47% Similarity=0.816 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
+++||.+||.+|+.++..|| .+|..||..|++||+.+|++||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.06 E-value=3.1e-10 Score=78.89 Aligned_cols=48 Identities=42% Similarity=0.894 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
++.||++||.+|..++..||..+|..||..|+ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~---~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP---GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC---CCCHHHHHHHHHHHcC
Confidence 57899999999999999999778999999999 8999999999998764
No 15
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.02 E-value=4.7e-10 Score=105.29 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcC-CCCChhhhHHHHHHHHHHHHHhh
Q 018768 54 KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEV-PGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 54 ~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~l-pgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
++++++++||+|||++|+++|++|| ++|..||+.+ ++||.+||+.||.++|+...+..
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg 79 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 79 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence 4688999999999999999999999 5799999988 69999999999999998876554
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.94 E-value=1.1e-09 Score=74.99 Aligned_cols=43 Identities=42% Similarity=0.771 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHH
Q 018768 61 SLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVF 103 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~ 103 (350)
+||.+||..|+.++..|| .+|..||..|++||..+|+++|+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999999876
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.91 E-value=2.2e-09 Score=73.46 Aligned_cols=45 Identities=42% Similarity=0.906 Sum_probs=42.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
.||.+||..|..++..||..+|..||..|+ +|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~---~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP---GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC---CCCHHHHHHHHHHhC
Confidence 599999999999999999889999999999 799999999998753
No 18
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.86 E-value=1.3e-09 Score=102.72 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCChhhhHHHHHHHHHHHHHhhhcccC
Q 018768 55 PGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVP-GRTAKRLGKWWEVFKEKQQREQKDSIR 116 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lp-gRT~~q~rnRW~~~l~k~~~~~k~s~~ 116 (350)
+.+.+|+||+|||.+|+++|.+|| ++|..|++.++ +|+.++||-||.++|+...+.+..+..
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~e 68 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDE 68 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHH
Confidence 345579999999999999999999 55999999998 999999999999999998876655443
No 19
>PLN03091 hypothetical protein; Provisional
Probab=98.83 E-value=3.6e-09 Score=106.19 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=51.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcC-CCCChhhhHHHHHHHHHHHHHhh
Q 018768 53 LKPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEV-PGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 53 L~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~l-pgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
.+..+++++||+|||++|+++|.+|| ++|..||+.+ ++|+++|||.||.++|....+..
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg 68 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence 34678999999999999999999999 4699999988 59999999999999887765544
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.76 E-value=1.7e-08 Score=104.93 Aligned_cols=124 Identities=26% Similarity=0.441 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHHHHh----C-------------C------CChhhhhHHhCCCCCCChhhhhhhhhhccCCCC-CCC
Q 018768 5 QRWRAEEDALLRAYVKQY----G-------------P------KEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI-KKG 60 (350)
Q Consensus 5 g~WT~EED~~L~~~V~ky----g-------------~------~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i-~kg 60 (350)
+.|+.+||+.|...|..| | . +-|+.|...|+ .|+....+.+-++..+|-- ++|
T Consensus 309 ~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp---~R~~~siy~~~rR~y~~FE~~rg 385 (607)
T KOG0051|consen 309 KKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP---YRDRKSIYHHLRRAYTPFENKRG 385 (607)
T ss_pred hhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC---cccchhHHHHHHhcCCccccccC
Confidence 789999999999999998 1 0 13788888888 6999998884444443322 899
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHHHHHhhhc
Q 018768 61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLV 138 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~iletfa~klv 138 (350)
.||++|++.|..++.++|+.|..|+..| ||.+..|+.+|..+.+.... ...++.........++.+...+.
T Consensus 386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~------~~r~~Ws~eEe~~Llk~V~~~~~ 456 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK------RNRGAWSIEEEEKLLKTVNEMIR 456 (607)
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc------cccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999877542 12224445555666666655443
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.36 E-value=7.4e-08 Score=99.25 Aligned_cols=100 Identities=23% Similarity=0.481 Sum_probs=87.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCC--CCCCCCCCHHHHHHHHHHHHHhC
Q 018768 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKP--GIKKGSLTDEEQHLVIHLQAKHG 78 (350)
Q Consensus 1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p--~i~kg~WT~EED~~Li~lv~~~G 78 (350)
++.+|.||++|+..|...+..+| ..|..|...++ |-+..|++||++|..+ .+++++|+.+|+.+|...+...-
T Consensus 288 f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~----rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~ 362 (512)
T COG5147 288 FEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG----RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMR 362 (512)
T ss_pred HhhhccCcccccccccccccccc-chhhHhhhhhc----cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHH
Confidence 35789999999999999999999 68999998885 9999999999999998 57788999999999999887432
Q ss_pred --------CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018768 79 --------NKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 79 --------~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
..|..|+.++++|...+|+..+.++..
T Consensus 363 ~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 397 (512)
T COG5147 363 LEAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS 397 (512)
T ss_pred HHHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence 349999999999999999887765544
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.01 E-value=1.3e-05 Score=59.75 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=44.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCCh---hhhhHHhCCCCCC-Chhhhhhhhhhcc
Q 018768 2 KERQRWRAEEDALLRAYVKQYGPKEW---SFVSQRMNTPLNR-DAKSCLERWKNYL 53 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W---~~IA~~l~~~~~R-t~~qCr~Rw~n~L 53 (350)
|+|-.||+||..++..+|+.||.++| ..|++.|.. .+ |..||+.+++.|.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHHHHHHH
Confidence 57889999999999999999998799 999999873 46 9999999998764
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.60 E-value=6e-05 Score=75.90 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
...||.+|+-+|++++..||.+||..||.+|+ .|+..+|.++|.+++
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIG---tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIG---TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc---ccchHHHHHHHHHHH
Confidence 35799999999999999999999999999999 799999999999865
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.28 E-value=0.00051 Score=51.17 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ch---hhhhhcCC-CC-ChhhhHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHGN-KW---KKIAAEVP-GR-TAKRLGKWWEVFKE 105 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~-~W---~~IA~~lp-gR-T~~q~rnRW~~~l~ 105 (350)
+-.||+||...+++++..+|. +| ..|+..|. .+ |..||+++.+.+.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999996 99 99999874 45 99999999887653
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.23 E-value=0.00033 Score=62.26 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---Cc----hhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018768 58 KKGSLTDEEQHLVIHLQAKHG---NK----WKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G---~~----W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
....||.|||.+|.+.|-.|- +. +..++..+ +||+..|.-|||.+++++...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 457899999999999999883 22 88999999 999999999999999997644
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00047 Score=69.62 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018768 56 GIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 56 ~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
.+-...||.+|+.+|++++..|| +||..||.++..||..+|+.+|.++.-
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 34566799999999999999999 899999999999999999999986553
No 27
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.13 E-value=0.0019 Score=59.54 Aligned_cols=101 Identities=27% Similarity=0.430 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc-CCCC--------------------CCCCCCH
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL-KPGI--------------------KKGSLTD 64 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L-~p~i--------------------~kg~WT~ 64 (350)
+|++.+|-.|+.+|..-. +-..|+..+...-.-|-....+||+..| +|.+ .+-.||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999999754 6788877665433567788899999865 3322 3567999
Q ss_pred HHHHHHHHHHHHhCC---chhhhhh-----cCCCCChhhhHHHHHHHHHHHH
Q 018768 65 EEQHLVIHLQAKHGN---KWKKIAA-----EVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 65 EED~~Li~lv~~~G~---~W~~IA~-----~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
+|+++|......... .+.+|-. +-++||++++.++|..+.+-..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L 130 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL 130 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence 999999997766543 3666633 3389999999999997665543
No 28
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.98 E-value=0.00077 Score=68.59 Aligned_cols=45 Identities=20% Similarity=0.565 Sum_probs=41.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
...||.+|..+|.+.|+.|| .+|.+||.+++ +++..||..||.+.
T Consensus 279 dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg---tKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYG-DDWDKVARHVG---TKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhh-hhHHHHHHHhC---CCCHHHHHHHHHcC
Confidence 46899999999999999999 68999999999 89999999999864
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.88 E-value=0.00074 Score=53.37 Aligned_cols=49 Identities=31% Similarity=0.660 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHHHHH--h----CC--C-----ChhhhhHHhCC-CCCCChhhhhhhhhhc
Q 018768 4 RQRWRAEEDALLRAYVKQ--Y----GP--K-----EWSFVSQRMNT-PLNRDAKSCLERWKNY 52 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~k--y----g~--~-----~W~~IA~~l~~-~~~Rt~~qCr~Rw~n~ 52 (350)
|..||.+|...|+.++.. + +. . -|..||..|.. +..||+.||+.+|.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 568999999999999987 2 11 1 39999999843 4589999999999874
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.82 E-value=0.0013 Score=68.48 Aligned_cols=46 Identities=22% Similarity=0.639 Sum_probs=42.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
-++.||.+|+-+|.++|+.|| .+|.+||.+++ +||..||..++.+.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg---~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG---TKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC---CCCHHHHHHHHHhc
Confidence 367899999999999999999 68999999999 89999999999763
No 31
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.82 E-value=0.00085 Score=53.00 Aligned_cols=53 Identities=32% Similarity=0.520 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHH------hC--C------chhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhh
Q 018768 60 GSLTDEEQHLVIHLQAK------HG--N------KWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQK 112 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~------~G--~------~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k 112 (350)
..||.+|...||+++.. ++ + -|..||..| ..||+.||+++|+++.+.......
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999987 21 1 399999977 479999999999999988775543
No 32
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.0011 Score=68.12 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHHHHHHHHhh
Q 018768 57 IKKGSLTDEEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQ 111 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~ 111 (350)
++.|.|+.-||++|-..|.+||. .|+.|+..++-.|+.||++||..++....+..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~t 60 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKT 60 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhh
Confidence 56788999999999999999995 59999999999999999999998887766544
No 33
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=96.36 E-value=0.57 Score=46.36 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHhC----------CchhhhhhcC----CCCChhhhHHHHHHHHHHHHHhhhcc
Q 018768 60 GSLTDEEQHLVIHLQAKHG----------NKWKKIAAEV----PGRTAKRLGKWWEVFKEKQQREQKDS 114 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G----------~~W~~IA~~l----pgRT~~q~rnRW~~~l~k~~~~~k~s 114 (350)
..|+.+|-..||++..... ..|..||..+ .-||+.+|+++|.++.++..+.+...
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999999999987642 3499999955 46999999999999999988765443
No 34
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.28 E-value=0.0035 Score=47.92 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHHHHHHhC--------CCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC
Q 018768 4 RQRWRAEEDALLRAYVKQYG--------PKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg--------~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i 57 (350)
|.+||.+||+.|...|..+. ..=|.++++.-++ ++|..+-++||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t--~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPT--RHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SS--S--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhccc
Confidence 56899999999999997662 1129999887664 7999999999999887643
No 35
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.22 E-value=0.007 Score=59.22 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
-..|+.+|+.+||+.....| ++|..||.+++.|+...|+.+|..+.-
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34699999999999999999 899999999999999999999876554
No 36
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.22 E-value=0.0049 Score=64.19 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF 103 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~ 103 (350)
++.||.+|+.+|++.+..||.+|.+||.++.+||..||--++..+
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 567999999999999999999999999999999999999887654
No 37
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.17 E-value=0.0047 Score=47.90 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=41.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhCC----------------CChhhhhHHhCC--CCCCChhhhhhhhhhcc
Q 018768 3 ERQRWRAEEDALLRAYVKQYGP----------------KEWSFVSQRMNT--PLNRDAKSCLERWKNYL 53 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~----------------~~W~~IA~~l~~--~~~Rt~~qCr~Rw~n~L 53 (350)
++.+||.+|...|+++|.+|.. ..|..|+..|+. +..|+..||+..|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999821 149999999843 23799999999998854
No 38
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.16 E-value=0.0043 Score=55.88 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc-------hhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018768 58 KKGSLTDEEQHLVIHLQAKHGNK-------WKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~-------W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
+...||.|+|.+|.+.|-.|+.. ...++..| +||+.+|..|||.+++++..
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye 61 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ 61 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence 56789999999999999988733 66777777 99999999999999998754
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.06 E-value=0.0081 Score=45.92 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhhhcCC-CCChhhhHHHHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHG--------NK-WKKIAAEVP-GRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G--------~~-W~~IA~~lp-gRT~~q~rnRW~~~l~k~~ 108 (350)
+.+||.+||..|+..|..+. |+ |..++..-+ .+|-...|+||...++.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 35799999999999996652 22 999999877 9999999999988777654
No 40
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.94 E-value=0.0038 Score=55.60 Aligned_cols=49 Identities=33% Similarity=0.630 Sum_probs=41.3
Q ss_pred CCCCCcHHHHHHHHHHHHHh---CC---CChhhhhHHhCCCCCCChhhhhhhhhhccCC
Q 018768 3 ERQRWRAEEDALLRAYVKQY---GP---KEWSFVSQRMNTPLNRDAKSCLERWKNYLKP 55 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~ky---g~---~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p 55 (350)
+.-.||.|||.+|.+.|-+| |. ..+.+|+..++ ||+.-|.-||+.++..
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~----RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN----RTAAACGFRWNAYVRK 57 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc----ccHHHhcchHHHHHHH
Confidence 45689999999999999999 31 14889999986 9999999999987753
No 41
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.90 E-value=0.0067 Score=61.93 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHH
Q 018768 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVF 103 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~ 103 (350)
....||.+|..+|++.++.||..|.+||.++.++|..||--||-.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 3458999999999999999999999999999999999999888654
No 42
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.80 E-value=0.017 Score=44.78 Aligned_cols=51 Identities=35% Similarity=0.662 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------chhhhhhcC-----CCCChhhhHHHHHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHG----N-------------KWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G----~-------------~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~ 109 (350)
+..||.+|...|++++.+|. + -|..|+..| +.||..+|+.+|..++....+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999999873 1 299999866 469999999999999877654
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.00 E-value=0.019 Score=56.32 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
.|+.+|+-+|+++....|.+||..||..++ .|+...|+++|..++.
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG---sr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG---SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh---hhhhHHHHHHHHHHHh
Confidence 599999999999999999999999999999 7999999999998765
No 44
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.66 E-value=0.21 Score=56.59 Aligned_cols=102 Identities=17% Similarity=0.336 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhh-------hhhhc--------------------------
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLE-------RWKNY-------------------------- 52 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~-------Rw~n~-------------------------- 52 (350)
.||.-+=..++.+..+||-.+-..||..|. ++|...++. ||..+
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~---~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~ 902 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME---GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKA 902 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc---CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999997 688777652 22110
Q ss_pred ----------------c-CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhh------------cCCCCChhhhHHHHHH
Q 018768 53 ----------------L-KPGIKKGSLTDEEQHLVIHLQAKHG-NKWKKIAA------------EVPGRTAKRLGKWWEV 102 (350)
Q Consensus 53 ----------------L-~p~i~kg~WT~EED~~Li~lv~~~G-~~W~~IA~------------~lpgRT~~q~rnRW~~ 102 (350)
+ .+..++..+|.+||..|+-.+.+|| ++|..|-. +|..||+..|..|.++
T Consensus 903 ~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~ 982 (1033)
T PLN03142 903 IGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDT 982 (1033)
T ss_pred HHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHH
Confidence 0 0122344599999999999999999 67999833 2258999999999999
Q ss_pred HHHHHHHh
Q 018768 103 FKEKQQRE 110 (350)
Q Consensus 103 ~l~k~~~~ 110 (350)
+++-..+.
T Consensus 983 l~~~~~~e 990 (1033)
T PLN03142 983 LIRLIEKE 990 (1033)
T ss_pred HHHHHHHH
Confidence 99887544
No 45
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=94.47 E-value=0.1 Score=52.29 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCChhhhHHHHH
Q 018768 60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILE 131 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~~~~~d~ile 131 (350)
.+||.+|-.++..+...+|..+..|+..||+|...||+-+|.+--++.--..........|+....|-....
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~~ 437 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLRS 437 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHHH
Confidence 369999999999999999999999999999999999999997665554433344445555666655544333
No 46
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.43 E-value=0.032 Score=50.38 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCC------ChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPK------EWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~------~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
+...||.|+|.+|.+.|-.|+.. ....++..+. |++..|..||+.++.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~----rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK----RTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----hhHHHHHhHHHHHHH
Confidence 45689999999999999998532 2666777775 999999999966554
No 47
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=93.31 E-value=0.2 Score=50.43 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhc-----CCC-CChhhhHHHHHHHHHHHHHhhhcc
Q 018768 60 GSLTDEEQHLVIHLQAKHGNKWKKIAAE-----VPG-RTAKRLGKWWEVFKEKQQREQKDS 114 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~~W~~IA~~-----lpg-RT~~q~rnRW~~~l~k~~~~~k~s 114 (350)
..||.+|.+-|+++++.|.-+|-.|+.. ++. ||-..++.||..+.++..+....+
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s 191 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS 191 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence 5799999999999999999999999987 555 999999999999999988775544
No 48
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=92.29 E-value=1.2 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018768 312 DAEAKEQKLAEQWSAKHLRLTKFLE 336 (350)
Q Consensus 312 dae~ke~k~~e~w~~~~~~~~~~~~ 336 (350)
+....+.++++.|...+..|++||-
T Consensus 77 e~~~~~~~~~~~~~~~~~~l~~fi~ 101 (131)
T PF04696_consen 77 EQKKEEERLMEIWHEHYLALANFIR 101 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555677889999999999999975
No 49
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=91.57 E-value=1.2 Score=44.94 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----------------CchhhhhhcC-----CCCChhhhHHHHHHHHHHHHHhhhccc
Q 018768 57 IKKGSLTDEEQHLVIHLQAKHG----------------NKWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQREQKDSI 115 (350)
Q Consensus 57 i~kg~WT~EED~~Li~lv~~~G----------------~~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~~~k~s~ 115 (350)
.--|.|+++=|+-..++...|. ++=..||+++ ..||.+||-.+-+.+.+++.+..+...
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~kl 153 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKL 153 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457899999999999988874 1247888866 468999999999999999888765544
Q ss_pred CCCCCCChhhhHHHHHHHHhhhccC
Q 018768 116 RIVDPIDEHKYDQILETFAEKLVNN 140 (350)
Q Consensus 116 ~~~~p~~~~~~d~iletfa~klv~~ 140 (350)
+.. +..+..++++..--+.+.+..
T Consensus 154 k~~-~sKdK~Lq~ma~~~saq~~sa 177 (455)
T KOG3841|consen 154 KDQ-SSKDKALQHMAEMGSAQITSA 177 (455)
T ss_pred hcc-cchHHHHHhhhcccccccccc
Confidence 432 333334444444333344333
No 50
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=90.97 E-value=0.31 Score=41.56 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhhcC------------CCCChhhhHHHHHHHHHHHH
Q 018768 56 GIKKGSLTDEEQHLVIHLQAKHGN----KWKKIAAEV------------PGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 56 ~i~kg~WT~EED~~Li~lv~~~G~----~W~~IA~~l------------pgRT~~q~rnRW~~~l~k~~ 108 (350)
+.++..||++||.-|+-.+.+||- .|..|-..+ ..||+..+..|.+++++-..
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~ 114 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE 114 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence 556778999999999999999996 698886532 56999999999999988654
No 51
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=90.83 E-value=0.45 Score=37.79 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHh---C----C------chhhhhhcC-----CCCChhhhHHHHHHHHHHHHH
Q 018768 61 SLTDEEQHLVIHLQAKH---G----N------KWKKIAAEV-----PGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~---G----~------~W~~IA~~l-----pgRT~~q~rnRW~~~l~k~~~ 109 (350)
.||++.+..|++++... | + .|..|+..| ...|..||++||..+.+.-..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence 49999999999998653 1 1 299998877 234788999999998887653
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=85.76 E-value=7 Score=42.68 Aligned_cols=43 Identities=21% Similarity=0.553 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018768 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
-.||+.|-.++..++..|. +++..|++.++ ++|..||-+-|+.
T Consensus 620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km~~---~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYS-KDFIFVQKMVK---SKTVAQCVEYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhc-ccHHHHHHHhc---cccHHHHHHHHHH
Confidence 4799999999999999998 78999999999 8999999998874
No 53
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=82.62 E-value=1.8 Score=42.91 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHHHHh---------CCCChhhhhHHhC-CCCCCChhhhhhhhhhc
Q 018768 5 QRWRAEEDALLRAYVKQY---------GPKEWSFVSQRMN-TPLNRDAKSCLERWKNY 52 (350)
Q Consensus 5 g~WT~EED~~L~~~V~ky---------g~~~W~~IA~~l~-~~~~Rt~~qCr~Rw~n~ 52 (350)
..|+.+|-..|+.+..+. ....|..||..+. .+..|++.||+.+|.|.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl 112 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENL 112 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 689999999999998754 1135999999553 34579999999999874
No 54
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=82.26 E-value=5.2 Score=41.37 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
....||.||--++-+.+..||.++.+|-+.||.|+-..+..+|....+...
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~ 236 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE 236 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence 345799999999999999999999999999999999999999887766644
No 55
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=81.36 E-value=1.7 Score=34.67 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHH--------HHHHHHhCCCChhhhhHHh
Q 018768 4 RQRWRAEEDALL--------RAYVKQYGPKEWSFVSQRM 34 (350)
Q Consensus 4 kg~WT~EED~~L--------~~~V~kyg~~~W~~IA~~l 34 (350)
.|-||+++|+.| ..++++|| +..|+.+.
T Consensus 47 ~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R~ 82 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERRK 82 (87)
T ss_dssp TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHHH
Confidence 578999999999 56667777 67776553
No 56
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=81.04 E-value=2.7 Score=33.30 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHHHh---CCC---------ChhhhhHHhCC--CCCCChhhhhhhhhh
Q 018768 6 RWRAEEDALLRAYVKQY---GPK---------EWSFVSQRMNT--PLNRDAKSCLERWKN 51 (350)
Q Consensus 6 ~WT~EED~~L~~~V~ky---g~~---------~W~~IA~~l~~--~~~Rt~~qCr~Rw~n 51 (350)
+||++.|+.|++++... |.. .|..|+..|.. +...+..||..||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999998655 212 39999988843 335678999999865
No 57
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=78.26 E-value=2.7 Score=35.86 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhCC---CChhhhhHHhCC-C--------CCCChhhhhhhhh
Q 018768 3 ERQRWRAEEDALLRAYVKQYGP---KEWSFVSQRMNT-P--------LNRDAKSCLERWK 50 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~-~--------~~Rt~~qCr~Rw~ 50 (350)
+++.||.+||.-|.-.+.+||. +.|..|-..+.. + ..||+..+..|-.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~ 107 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN 107 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence 5678999999999999999998 899999886631 0 1477777666643
No 58
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=77.92 E-value=2.9 Score=42.33 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018768 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
-+||.+|-.++..+...+| .+++.||+.+| +|+.+|+...|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP---~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWG-TDFSLISSLFP---NRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhc-chHHHHHHhcC---chhHHHHHHHHHHH
Confidence 3799999999999999999 68999999999 89999999999763
No 59
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=76.22 E-value=4.5 Score=34.29 Aligned_cols=44 Identities=34% Similarity=0.611 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 018768 228 LLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRRE--KMEEIEAKMK 285 (350)
Q Consensus 228 ~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~--~~ee~e~~~~ 285 (350)
..|..|++.+.+|.+. +.....||+.|+..+++. ++++++.+|+
T Consensus 72 ~i~t~L~~v~~~l~~~--------------~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~ 117 (118)
T PF08514_consen 72 KIMTSLCDVAKSLSEE--------------LEKTQRQLEAEKKKKRKNKSRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 4788999999998873 456778999999876644 6899998885
No 60
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=75.37 E-value=5.6 Score=28.12 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018768 64 DEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 64 ~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
++++..++.++-..|-.|..||..+ |.|...|+++....+++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK 53 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence 4677888889889999999999999 89999999887766543
No 61
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.71 E-value=6.6 Score=27.20 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018768 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
+=|..|+.+....+...|..||+.++ =+...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg----lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG----LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT----S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC----cCHHHHHHHHHH
Confidence 45888999999999899999999997 899999999864
No 62
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=70.23 E-value=64 Score=32.20 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHh-CCc---hhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018768 60 GSLTDEEQHLVIHLQAKH-GNK---WKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~-G~~---W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
..||.-|...|+++.+-. |.. -..|++.++||+..+|++.-+.++.+..+.
T Consensus 22 ~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvare 76 (344)
T PF11035_consen 22 AAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVARE 76 (344)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHH
Confidence 459999999998888765 433 567889999999999999887777665543
No 63
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=70.17 E-value=80 Score=28.14 Aligned_cols=131 Identities=27% Similarity=0.392 Sum_probs=69.5
Q ss_pred CCCCCCCCCCCCCCCCCCC-ccccCCC-CCCCCCCCCCchhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHH
Q 018768 190 TVAAAPPIPWLQPERGSDN-TLVLGNM-PTHGSVPICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLES 267 (350)
Q Consensus 190 ~~~~~~~~p~~~~~~~~~~-~~~l~~~-~~~g~~~~~~~~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~ 267 (350)
.++|.|..|-+-...|.++ -+.|.+. ..+|+|++ ..=.++|+-.|+ +++|-+-=.- +. +.
T Consensus 10 eaQT~py~pe~~~~~~~~pE~l~L~~L~~~~GlPag----~~Eve~IeRaR~----KRawEa~Lpp-------~~---d~ 71 (154)
T PF14738_consen 10 EAQTDPYSPEYVVPEGSNPELLTLATLTWGDGLPAG----LAEVEMIERARE----KRAWEAALPP-------LD---DE 71 (154)
T ss_pred hhhcCCCCCCccCCCCCChhHhhHhhcCcCCCCCCc----HHHHHHHHHHHH----HHHHHHhCCC-------CC---CH
Confidence 3445554443333344444 3445554 33566554 344566777775 5666442211 11 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHH-HHHHhhhhch-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018768 268 EKACRRREKMEEIEAKMKALRDEQRATLDRIEAEY-REQIAGLRRD-AEAKEQKLAEQWSAKHLRLTKFLEQM 338 (350)
Q Consensus 268 e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y-~e~~~~l~rd-ae~ke~k~~e~w~~~~~~~~~~~~~~ 338 (350)
....+||--|+++|-+==+.||++...|.-+=-+- ++.|..-..+ .++-.++|-..|..+....-.-++.+
T Consensus 72 ~~~~kRr~mme~~E~~EW~~RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki 144 (154)
T PF14738_consen 72 ASLEKRRKMMEEMEWKEWAFREEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKI 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888899999999999999987765432211 1111111111 22335667777776665555544443
No 64
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.72 E-value=60 Score=26.14 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHH
Q 018768 269 KACRRREKM-EEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAE 322 (350)
Q Consensus 269 ~~~~~r~~~-ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e 322 (350)
.+...|+.+ .+|+.=+..|.+++...|++|+.++++.+..|..-.+.=++.+..
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555 778999999999999999999999999999888776666666554
No 65
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.69 E-value=86 Score=35.10 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=7.1
Q ss_pred CCChhhhHHHHHHHHH
Q 018768 90 GRTAKRLGKWWEVFKE 105 (350)
Q Consensus 90 gRT~~q~rnRW~~~l~ 105 (350)
.|.+--+|..|..++.
T Consensus 414 irnDy~~rpqYykLIE 429 (1102)
T KOG1924|consen 414 IRNDYYIRPQYYKLIE 429 (1102)
T ss_pred HhhhhhhhHHHHHHHH
Confidence 3444444444444433
No 66
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.59 E-value=1.2e+02 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 018768 266 ESEKACRRREKMEEIEAKMKALR 288 (350)
Q Consensus 266 e~e~~~~~r~~~ee~e~~~~~l~ 288 (350)
|-|-..|+-|.+-+.-.|+++.+
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMK 255 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHH
Confidence 33444444444444444444443
No 67
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=67.06 E-value=13 Score=39.05 Aligned_cols=44 Identities=36% Similarity=0.491 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 018768 259 RRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYR 303 (350)
Q Consensus 259 ~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~ 303 (350)
++-.||||.|+.-||-|.---.|.. |+=.|||+|--+-|-+||.
T Consensus 408 r~rkqqleae~e~kreearrkaeee-r~~keee~arrefirqey~ 451 (708)
T KOG3654|consen 408 RRRKQQLEAEKEQKREEARRKAEEE-RAPKEEEVARREFIRQEYE 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhh-hcchhhhhhHHHHHHHHHH
Confidence 3457999999988764432211111 7778999999899999994
No 68
>PRK11637 AmiB activator; Provisional
Probab=65.78 E-value=1.3e+02 Score=30.74 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=10.4
Q ss_pred hhhhhHHHHHHHHHhhhhchH
Q 018768 293 ATLDRIEAEYREQIAGLRRDA 313 (350)
Q Consensus 293 ~~~~~~e~~y~e~~~~l~rda 313 (350)
+.|.+-+..+..+|..|.+++
T Consensus 236 ~~l~~~~~~L~~~I~~l~~~~ 256 (428)
T PRK11637 236 SELRANESRLRDSIARAEREA 256 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555443
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.15 E-value=1.4e+02 Score=34.77 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=72.9
Q ss_pred chhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHhhhhhhHHHHH
Q 018768 226 ENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACR---RREKMEEIEAKMKALRDEQRATLDRIEAEY 302 (350)
Q Consensus 226 ~~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~---~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y 302 (350)
+...+...++.--++.....+...|+..-+-....++.+.+.-++.- .-...+.+.+++.+++++.....++++.+|
T Consensus 343 ~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 422 (1201)
T PF12128_consen 343 DIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEY 422 (1201)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777788888777777777766665544332 223456678888889999999999999999
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHH
Q 018768 303 REQIAGLRRDAEAKEQKLAEQWSA 326 (350)
Q Consensus 303 ~e~~~~l~rdae~ke~k~~e~w~~ 326 (350)
..+...+|...+...+.+-++=..
T Consensus 423 ~~l~~~~~~~~~~~~~~~~~~~~~ 446 (1201)
T PF12128_consen 423 QALEQELRQQSQEQLEELQEQREQ 446 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777777776665333
No 70
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.10 E-value=53 Score=36.52 Aligned_cols=45 Identities=27% Similarity=0.484 Sum_probs=31.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHH
Q 018768 278 EEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAE 322 (350)
Q Consensus 278 ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e 322 (350)
++.|.+.+.|+++....+.+...+|.+.|...|+.++....+|-+
T Consensus 546 ~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 546 KELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666677777777777777777777777777777765555554
No 71
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=63.74 E-value=13 Score=32.49 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018768 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k 59 (350)
+++-.- .+-|.+|+.+.++.|...|.+||+.++ -+...|+.|+++..+.++-+
T Consensus 2 ~~~~~l-D~~D~~Il~~Lq~d~R~s~~eiA~~lg----lS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 2 MENYQI-DNLDRGILEALMENARTPYAELAKQFG----VSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred Cccccc-CHHHHHHHHHHHHcCCCCHHHHHHHHC----cCHHHHHHHHHHHHHCCCee
Confidence 333343 357899999999999899999999997 99999999999877666543
No 72
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=60.97 E-value=12 Score=41.09 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHH
Q 018768 60 GSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k 106 (350)
..||+.|-.++-+++-.|...+-.|++.++++|-.||-.+|...++-
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~ 666 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKI 666 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999998887665544
No 73
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=60.35 E-value=1.3e+02 Score=29.99 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhchHHH
Q 018768 288 RDEQRATLDRIEAEYREQIAGLRRDAEA 315 (350)
Q Consensus 288 ~~e~~~~~~~~e~~y~e~~~~l~rdae~ 315 (350)
-.+....+-.|+.+|.+|+..|+++.+.
T Consensus 81 ~~~r~~~~~~i~~~~~~q~~~l~~~~~~ 108 (332)
T TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAMTA 108 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667778999999999999998543
No 74
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=59.22 E-value=9.8 Score=33.60 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCC
Q 018768 9 AEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKK 59 (350)
Q Consensus 9 ~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~k 59 (350)
.+-|.+++.+.++.|...|.+||+.++ -+...|+.|+++..+.++-+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg----lS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG----LSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC----cCHHHHHHHHHHHHHCCCeE
Confidence 456889999999999889999999997 99999999999887766543
No 75
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=59.13 E-value=70 Score=26.03 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHH
Q 018768 278 EEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLA 321 (350)
Q Consensus 278 ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~ 321 (350)
+++.........+.......|+.++.+.+..|+.++...-.+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv 94 (105)
T PF03179_consen 51 EEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVV 94 (105)
T ss_dssp HHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555556666666666666666666665544433
No 76
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=58.23 E-value=96 Score=30.91 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018768 316 KEQKLAEQWSAKHLRLTKFLE 336 (350)
Q Consensus 316 ke~k~~e~w~~~~~~~~~~~~ 336 (350)
-++++.++|..-..++..|+-
T Consensus 213 a~~q~~e~w~~~~kk~s~~IR 233 (340)
T KOG3756|consen 213 ALAQLFEEWNEHNKKISNYIR 233 (340)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 357799999998888887775
No 77
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=57.97 E-value=25 Score=30.35 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhch
Q 018768 274 REKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRD 312 (350)
Q Consensus 274 r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rd 312 (350)
..++++-+..+|+ .+.|||++...|+..|+||
T Consensus 100 ~~~~~~~~~~~r~-------~~~~le~~~~~~~~~~~~~ 131 (131)
T PRK06228 100 FLTLDERERSVRS-------ALAKLESGFIRRFMELKHD 131 (131)
T ss_pred HHhhhhhHHHHHH-------HHHHHHHHHHHHHHHhcCC
Confidence 4455555555544 8999999999999999998
No 78
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=56.61 E-value=16 Score=39.18 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018768 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
..+.||..|-.+........|.+.+.|+..+|+|+..|||-++..--++.
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 34689999999999999999999999999999999999999886544443
No 79
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=56.45 E-value=2.7e+02 Score=29.49 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=32.0
Q ss_pred HHhHHHHhhhhhhHHHHHHHHHh-hhhchHHHHHHHHHHHHHHHHHHH
Q 018768 285 KALRDEQRATLDRIEAEYREQIA-GLRRDAEAKEQKLAEQWSAKHLRL 331 (350)
Q Consensus 285 ~~l~~e~~~~~~~~e~~y~e~~~-~l~rdae~ke~k~~e~w~~~~~~~ 331 (350)
..++.|-..+...++..|.++|. .|+|=+++=+++|.+.=...-..|
T Consensus 310 ~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~ 357 (582)
T PF09731_consen 310 EELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIEL 357 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777888888888887 777777777777666544443333
No 80
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=56.41 E-value=11 Score=30.12 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=10.1
Q ss_pred CCCCCCCCCHHHHHHHH
Q 018768 55 PGIKKGSLTDEEQHLVI 71 (350)
Q Consensus 55 p~i~kg~WT~EED~~Li 71 (350)
|....|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55678899999999983
No 81
>smart00595 MADF subfamily of SANT domain.
Probab=56.05 E-value=12 Score=29.19 Aligned_cols=29 Identities=28% Similarity=0.669 Sum_probs=24.6
Q ss_pred hhhhhhcCCCCChhhhHHHHHHHHHHHHHh
Q 018768 81 WKKIAAEVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 81 W~~IA~~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
|..||..|. -|..+|+.+|+++.....+.
T Consensus 30 W~~Ia~~l~-~~~~~~~~kw~~LR~~y~~e 58 (89)
T smart00595 30 WEEIAEELG-LSVEECKKRWKNLRDRYRRE 58 (89)
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHH
Confidence 999999994 49999999999987766554
No 82
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.68 E-value=1.6e+02 Score=27.77 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 018768 321 AEQWSAKHLRLTK 333 (350)
Q Consensus 321 ~e~w~~~~~~~~~ 333 (350)
..+-...-..|..
T Consensus 139 ~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 139 QSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 83
>PRK02224 chromosome segregation protein; Provisional
Probab=54.89 E-value=2.8e+02 Score=30.79 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHhhHHHHhhhhhhhhhhhhHHHHHH
Q 018768 239 ELEEGHRAWAAHKKEAAWRLRRVELQLE 266 (350)
Q Consensus 239 elee~~~~~~~~kkea~~rl~~~e~qle 266 (350)
++.+.........++..=.+..++..++
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333343444444444444444333
No 84
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=54.73 E-value=44 Score=34.02 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCChhhhHHHHHHHHHH
Q 018768 60 GSLTDEEQHLVIHLQAKHGNKWKKIAA-EVPGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~G~~W~~IA~-~lpgRT~~q~rnRW~~~l~k 106 (350)
..|+++|=..+-+-++.||.++..|.+ .++.|+--.|-..|...++.
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkS 325 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKS 325 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcC
Confidence 359999999999999999999999966 78999999999888766654
No 85
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=54.43 E-value=18 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018768 1 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 1 ~kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
|+++..||+|+-..++..+...| ..-..|+..++ = ..+...+|.+.+
T Consensus 1 m~~r~~ys~e~K~~~v~~~~~~g-~sv~~va~~~g----i-~~~~l~~W~~~~ 47 (76)
T PF01527_consen 1 MRKRRRYSPEFKLQAVREYLESG-ESVSEVAREYG----I-SPSTLYNWRKQY 47 (76)
T ss_dssp --SS----HHHHHHHHHHHHHHH-CHHHHHHHHHT----S--HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CceEeeecccc----c-ccccccHHHHHH
Confidence 89999999999999999996666 67899999887 2 455667787655
No 86
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=54.43 E-value=1.2e+02 Score=24.69 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhh----hhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018768 268 EKACRRREKMEEIEAKMKALRDEQRAT----LDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQ 337 (350)
Q Consensus 268 e~~~~~r~~~ee~e~~~~~l~~e~~~~----~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~ 337 (350)
++..+.++..+|.+.-|..+|.+.-.. ...++.++......|.++.+.+=++|-..-..+....+.+|=.
T Consensus 26 ~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~ 99 (105)
T PF03179_consen 26 EREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLS 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555566678888888888766544 4445555667778888888888888888777777777766543
No 87
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=54.36 E-value=49 Score=27.06 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHh----CC----chhh----hhhcC-CCCChhhhHHHHHHHHHHHHHhhhcccCCCCCCC
Q 018768 60 GSLTDEEQHLVIHLQAKH----GN----KWKK----IAAEV-PGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPID 122 (350)
Q Consensus 60 g~WT~EED~~Li~lv~~~----G~----~W~~----IA~~l-pgRT~~q~rnRW~~~l~k~~~~~k~s~~~~~p~~ 122 (350)
..||++++..|++.+..| |. .|.. |...+ ..=|..|+.++-+.+.++.....+......+|..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k~~~g~~~~~ 80 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKKSKNGKDPSF 80 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhhcccCcCCCC
Confidence 469999999999988776 52 3433 33333 2237789999988888887765544334444433
No 88
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.19 E-value=75 Score=29.62 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=44.8
Q ss_pred HhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHh
Q 018768 242 EGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIA 307 (350)
Q Consensus 242 e~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~ 307 (350)
=|..+|..|- +.|..+..+||.+-+ +.|+.+++|-..=|.-..+-..-|..+|..|.+.|+
T Consensus 129 ~g~naW~~~n----~~Le~~~~~le~~l~-~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~ 189 (221)
T PF05700_consen 129 YGENAWLIHN----EQLEAMLKRLEKELA-KLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVS 189 (221)
T ss_pred HhHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4677888886 455666666666554 455778888888888888888888888888888765
No 89
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=52.88 E-value=41 Score=30.93 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=14.7
Q ss_pred HHHHhHHHHhhhhhhHHHHHHHHHhhh
Q 018768 283 KMKALRDEQRATLDRIEAEYREQIAGL 309 (350)
Q Consensus 283 ~~~~l~~e~~~~~~~~e~~y~e~~~~l 309 (350)
=...|.++...+...+++||.+++.+|
T Consensus 135 ~lq~i~ee~~k~q~~l~~eye~k~~~L 161 (185)
T PF08703_consen 135 VLQQIEEEEKKLQAELEQEYEEKMKRL 161 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555555
No 90
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.89 E-value=2.3e+02 Score=27.42 Aligned_cols=92 Identities=17% Similarity=0.315 Sum_probs=73.7
Q ss_pred HHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhHHHHhhhhhh
Q 018768 238 RELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRR--------------------REKMEEIEAKMKALRDEQRATLDR 297 (350)
Q Consensus 238 ~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~--------------------r~~~ee~e~~~~~l~~e~~~~~~~ 297 (350)
+.|+..+.-...-++.+.+++..|++||+--.+.=. .=++.+..-.|..|+++|..-|+-
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdElde 142 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDE 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666678889999999999987765421 126788888999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 018768 298 IEAEYREQIAGLRRDAEAKEQKLAEQWSAKHL 329 (350)
Q Consensus 298 ~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~ 329 (350)
++.-++.-++.|-+.-..|.+++--.=+.|..
T Consensus 143 l~e~~~~el~~l~~~~q~k~~~il~~~~~k~~ 174 (258)
T PF15397_consen 143 LNEMRQMELASLSRKIQEKKEEILSSAAEKTQ 174 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887665555443
No 91
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.80 E-value=1.5e+02 Score=34.27 Aligned_cols=47 Identities=40% Similarity=0.560 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHH
Q 018768 268 EKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEA 315 (350)
Q Consensus 268 e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ 315 (350)
.+.+.-|.|+-+|||+|.+++.|..+-=+.|+ +-|+-|-++||-+..
T Consensus 309 ~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~-~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 309 GKIEEARQKLTEIEAKIGELKDEVDAQDEEIE-EARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHH
Confidence 45566788889999999999999988777776 567777777774433
No 92
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=51.39 E-value=22 Score=24.50 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCC-chhhhhhcCCCCChhhhHHHHHHH
Q 018768 65 EEQHLVIHLQAKHGN-KWKKIAAEVPGRTAKRLGKWWEVF 103 (350)
Q Consensus 65 EED~~Li~lv~~~G~-~W~~IA~~lpgRT~~q~rnRW~~~ 103 (350)
+=|..|+.+...-|. .|..||..+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 447788888888774 499999999 88999999998765
No 93
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=50.89 E-value=69 Score=34.17 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHH
Q 018768 262 ELQLESEKACRRREKMEE---IEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQ 323 (350)
Q Consensus 262 e~qle~e~~~~~r~~~ee---~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~ 323 (350)
+++++.+...|+.++++. -++|||+.-|+ +-- -+.+-+||=+.-+-|-++-|+|+|+|
T Consensus 228 rk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek--qee--e~ke~e~~~~k~~q~~~~~eek~a~q 288 (591)
T KOG2412|consen 228 RKRRAHQEELRQKEDEEAELQEQEKIRAEEEK--QEE--ERKEAEEQAEKEVQDPKAHEEKLAEQ 288 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHH--HHHHHHHHHHHHhcCchhcccccccc
Confidence 344444444444444432 24556655433 111 22333445555555666666777664
No 94
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=50.87 E-value=21 Score=33.25 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcC---CCCChhhhHHHHHHHHHH
Q 018768 61 SLTDEEQHLVIHLQAKHGNKWKKIAAEV---PGRTAKRLGKWWEVFKEK 106 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~~W~~IA~~l---pgRT~~q~rnRW~~~l~k 106 (350)
.|++.+|..||..|.. |+.-..|+..+ -.-|-..|..||..++=.
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 4999999999998864 44444554432 233889999999988744
No 95
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=50.33 E-value=23 Score=38.03 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=36.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCC-------CCCCChhhhhhhhhhcc
Q 018768 4 RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNT-------PLNRDAKSCLERWKNYL 53 (350)
Q Consensus 4 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-------~~~Rt~~qCr~Rw~n~L 53 (350)
|..||..|.+-+..++..+| .++..|-+.+-. .--+|..|.+.+|++.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 66899999999999999999 789988333311 01366778888887643
No 96
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=49.92 E-value=35 Score=23.72 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHH
Q 018768 65 EEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 65 EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~ 107 (350)
+++..++.++-..|-.+..||..+ |-|...|+.+-...+++-
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKKL 48 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHHh
Confidence 445556656556667799999999 889999999888777653
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.66 E-value=3.3e+02 Score=28.26 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHhhhhhhHHHHHHHH--
Q 018768 230 VSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKM--EEIEAKMKALRDEQRATLDRIEAEYREQ-- 305 (350)
Q Consensus 230 ~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~--ee~e~~~~~l~~e~~~~~~~~e~~y~e~-- 305 (350)
-..|.-|...|=.+++--+.|=+...=-|..|++.++.|++.-+.--- -+=..|+..+++|++..+..++++|..+
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~ 224 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777888899999999999887653322 2335678889999999999999999763
Q ss_pred -HhhhhchHHHHHHHHH
Q 018768 306 -IAGLRRDAEAKEQKLA 321 (350)
Q Consensus 306 -~~~l~rdae~ke~k~~ 321 (350)
+..|+.++..=.+.++
T Consensus 225 ~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 225 KLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 5666666555444444
No 98
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.42 E-value=48 Score=24.35 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 018768 257 RLRRVELQLESEKACR 272 (350)
Q Consensus 257 rl~~~e~qle~e~~~~ 272 (350)
||..||.+|=+|+..+
T Consensus 5 Rl~ELe~klkaerE~R 20 (52)
T PF12808_consen 5 RLEELERKLKAEREAR 20 (52)
T ss_pred HHHHHHHHHHHhHHhc
Confidence 7888888888888433
No 99
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=46.75 E-value=38 Score=26.98 Aligned_cols=67 Identities=30% Similarity=0.323 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 018768 256 WRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSA 326 (350)
Q Consensus 256 ~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~ 326 (350)
+......++|-.|...+-++-+++.-.+++.+|.+= .....++.+++..=.=|.+.=++-+.+.-..
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~----~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~ 99 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMDEFRQEMRALRQEL----RAARQELRALLAAPPPDEAAIEALLEEIREA 99 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCSSS-HHHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 334445567777777777777777777777777553 3444555566655555555555544444443
No 100
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=46.47 E-value=25 Score=40.75 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHh-CCchhhh
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKH-GNKWKKI 84 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg~WT~EED~~Li~lv~~~-G~~W~~I 84 (350)
-|..++|..|.-.|-+||.++|..|- + ++.-|... +..++...-.+.|=...-..|+.+...+ +.+|...
T Consensus 1135 ~W~~e~Ds~LLiGI~khGygswe~Ir--~------Dp~L~l~d-Ki~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~~ 1205 (1373)
T KOG0384|consen 1135 DWGSEDDSMLLIGIFKHGYGSWEAIR--L------DPDLGLTD-KIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPKK 1205 (1373)
T ss_pred CCCchhhhhHhhhhhhcccccHHHhc--c------Cccccchh-hhcccccCCchHHHHHHHHHHHHHHhhcccCCCchh
Confidence 59999999999999999999999982 2 12212111 1122222334445555555666665555 3444443
No 101
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=46.02 E-value=30 Score=37.18 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhh----------cCCCCChhhhHHHHHHHHHHHHHh
Q 018768 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAA----------EVPGRTAKRLGKWWEVFKEKQQRE 110 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~----------~lpgRT~~q~rnRW~~~l~k~~~~ 110 (350)
+..||-+|..-+...+++||.++..|-. ...-+|-.|++.+|...+++..+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~ 149 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKL 149 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999998832 233457778999988887776543
No 102
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.82 E-value=1.5e+02 Score=33.11 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchH
Q 018768 280 IEAKMKALRDEQRATLDRIEAEYREQIAGLRRDA 313 (350)
Q Consensus 280 ~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rda 313 (350)
++.+...|.++....+.+.+.+|.+.|...++.|
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~ 586 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555555555443
No 103
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=45.42 E-value=29 Score=36.09 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018768 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
-.||.||--++-++...|| .++.+|-+.|+ .|+-.+...-|+.
T Consensus 188 d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP---~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 188 DEWTAEDIVLFEQAFQFFG-KDFHKIRQALP---HRSLASLVQYYYS 230 (534)
T ss_pred ccchHHHHHHHHHHHHHhc-ccHHHHHHHcc---CccHHHHHHHHHH
Confidence 4699999999999999999 78999999999 8999888877764
No 104
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=45.10 E-value=1.6e+02 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 018768 295 LDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFL 335 (350)
Q Consensus 295 ~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~ 335 (350)
++.-..++.+.+..-++|++..-++...+=...-..+..-|
T Consensus 83 ~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l 123 (141)
T PRK08476 83 IAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQL 123 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666655555555544444444433
No 105
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=43.78 E-value=42 Score=26.39 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCCCCC--hhhhhhhhhhccC
Q 018768 14 LLRAYVKQYGP-------KEWSFVSQRMNTPLNRD--AKSCLERWKNYLK 54 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~~Rt--~~qCr~Rw~n~L~ 54 (350)
.|..+|.++|. +.|..|+..|+-+..-+ +.+++..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 56777777763 36999999997432222 3567777777764
No 106
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.69 E-value=1.6e+02 Score=27.00 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=55.6
Q ss_pred hhhhHHHHHHHHHHHhhHH-------------HHhhhhhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHh
Q 018768 228 LLVSELMECCRELEEGHRA-------------WAAHKKEAAWRLRRVELQLESEKACR--RREKMEEIEAKMKALRDEQR 292 (350)
Q Consensus 228 ~~~~~l~~~~~elee~~~~-------------~~~~kkea~~rl~~~e~qle~e~~~~--~r~~~ee~e~~~~~l~~e~~ 292 (350)
.....+..+..+||+-.=+ -.....+..=..+++|.+++-+.+.. .-++|-++|.||..|+++..
T Consensus 69 ~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~ 148 (190)
T PF05266_consen 69 SSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA 148 (190)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888873211 11222344445566777776664433 34677888888888887765
Q ss_pred hhhhhHHHHHHHHHhhhhchHHHHHHHHH
Q 018768 293 ATLDRIEAEYREQIAGLRRDAEAKEQKLA 321 (350)
Q Consensus 293 ~~~~~~e~~y~e~~~~l~rdae~ke~k~~ 321 (350)
..-..-|+.. -.++.|.-||++=.+.+.
T Consensus 149 ~~~~~ke~~~-~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 149 KLKEKKEAKD-KEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5555555444 445666666666555443
No 107
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=43.60 E-value=24 Score=36.48 Aligned_cols=24 Identities=54% Similarity=0.887 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 018768 266 ESEKACRRREKMEEIEAKMKALRDE 290 (350)
Q Consensus 266 e~e~~~~~r~~~ee~e~~~~~l~~e 290 (350)
++||+.|+|| .+|.||+.+|||.|
T Consensus 394 ~~~~~AK~re-L~eLeAq~~aL~AE 417 (419)
T PF12737_consen 394 EAEREAKRRE-LEELEAQARALRAE 417 (419)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 6778877765 77899999999987
No 108
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.30 E-value=1e+02 Score=28.71 Aligned_cols=81 Identities=16% Similarity=0.353 Sum_probs=0.0
Q ss_pred HhhHHHHhhh-----hhhhhhhhhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 018768 242 EGHRAWAAHK-----KEAAWRLRRVELQLE-------------SEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYR 303 (350)
Q Consensus 242 e~~~~~~~~k-----kea~~rl~~~e~qle-------------~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~ 303 (350)
+|+..|++-+ ..+.=||..||+||+ .+......++.++-+..|..|.+|-... +
T Consensus 74 ~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L--------~ 145 (206)
T PRK10884 74 KGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL--------K 145 (206)
T ss_pred CCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHH
Q 018768 304 EQIAGLRRDAEAKEQKLAEQWSAKHLR 330 (350)
Q Consensus 304 e~~~~l~rdae~ke~k~~e~w~~~~~~ 330 (350)
++|+.++-..+.=++++.........+
T Consensus 146 ~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 146 NQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>PHA02675 ORF104 fusion protein; Provisional
Probab=42.81 E-value=58 Score=26.27 Aligned_cols=37 Identities=35% Similarity=0.671 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018768 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKM 284 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~ 284 (350)
...++++||+++.+ +|+|||.-+|. -|+.|--.--||
T Consensus 45 ~~~~i~~cC~~~~~--------------~L~RLE~H~ET-----LRk~Ml~L~KKI 81 (90)
T PHA02675 45 SYKTITDCCRETGA--------------RLDRLERHLET-----LREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHH-----HHHHHHHHHhhc
Confidence 45677899999887 69999988876 455565554444
No 110
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=42.61 E-value=61 Score=33.72 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHhhhh-chHHHHHHHHHH
Q 018768 295 LDRIEAEYREQIAGLR-RDAEAKEQKLAE 322 (350)
Q Consensus 295 ~~~~e~~y~e~~~~l~-rdae~ke~k~~e 322 (350)
-++||.||.++++.|| -+||++-+++.|
T Consensus 391 ~~k~EEEYas~~~kl~l~eaee~r~~~~e 419 (446)
T PF07227_consen 391 SEKIEEEYASRYLKLRLNEAEEERKKKFE 419 (446)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455666666666665 345555554444
No 111
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=42.57 E-value=18 Score=36.95 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCChhhhhHH-----hCCCCCCChhhhhhhhhhcc
Q 018768 5 QRWRAEEDALLRAYVKQYGPKEWSFVSQR-----MNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 5 g~WT~EED~~L~~~V~kyg~~~W~~IA~~-----l~~~~~Rt~~qCr~Rw~n~L 53 (350)
..||.+|-+-|.+++.+|.- .|-.|+.+ .++ .||-....+||+.+.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~--sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKK--SRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccc--cccHHHHHHHHHHHH
Confidence 56999999999999999984 59999988 452 599999999998653
No 112
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=41.99 E-value=99 Score=22.95 Aligned_cols=41 Identities=37% Similarity=0.397 Sum_probs=29.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018768 251 KKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQ 291 (350)
Q Consensus 251 kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~ 291 (350)
|+|=--.|..=+...|.++...++...++-|+-|+.||.+.
T Consensus 10 R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~l 50 (57)
T PF06886_consen 10 RKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKEL 50 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444456666777778888888888888888888888753
No 113
>smart00595 MADF subfamily of SANT domain.
Probab=41.60 E-value=18 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.816 Sum_probs=20.3
Q ss_pred ChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018768 26 EWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 26 ~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
.|..||..|+ -+..+|+.+|.+.
T Consensus 29 aW~~Ia~~l~----~~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELG----LSVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHC----cCHHHHHHHHHHH
Confidence 4999999998 4999999999874
No 114
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=41.04 E-value=41 Score=28.18 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHHHh------------CC------------------CChhhhhHHhCCCCCCChhhhhhhhhhccC
Q 018768 6 RWRAEEDALLRAYVKQY------------GP------------------KEWSFVSQRMNTPLNRDAKSCLERWKNYLK 54 (350)
Q Consensus 6 ~WT~EED~~L~~~V~ky------------g~------------------~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~ 54 (350)
++|++||-.|...|.+| |. .-....+...+ ..|..+=|+||++++.
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p---~HT~~sWRDR~RKfv~ 76 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNP---RHTENSWRDRYRKFVS 76 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTT---TS-HHHHHHHHHHTHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCC---ccchhHHHHHHHHHHH
Confidence 58999999999999877 10 11444555556 7899999999988763
No 115
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=40.55 E-value=55 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 68 HLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 68 ~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
..++.+.-..|-.+..||..+ |.|...|+++....+++-.
T Consensus 119 r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~Lr 158 (161)
T TIGR02985 119 RKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKELR 158 (161)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 334444334567899999999 8899999999988776643
No 116
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=39.83 E-value=47 Score=28.86 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 65 EEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 65 EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
+-|..|+.+..+-| ..|+.||+.+ |-|...|++|++.+.....
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 56888888888887 4599999999 9999999999999988754
No 117
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=39.58 E-value=28 Score=26.22 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=25.4
Q ss_pred hhhhhhcCCC-CChhhhHHHHHHHHHHHHHhhh
Q 018768 81 WKKIAAEVPG-RTAKRLGKWWEVFKEKQQREQK 112 (350)
Q Consensus 81 W~~IA~~lpg-RT~~q~rnRW~~~l~k~~~~~k 112 (350)
|..|+..+.. -+..+|+.+|+.+.....+..+
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~ 61 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDRYRRELK 61 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999953 5788999999998877665543
No 118
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=39.28 E-value=2.4e+02 Score=31.74 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=3.8
Q ss_pred Cchhhhh
Q 018768 79 NKWKKIA 85 (350)
Q Consensus 79 ~~W~~IA 85 (350)
.+|.+.+
T Consensus 790 sRWkk~q 796 (1259)
T KOG0163|consen 790 SRWKKSQ 796 (1259)
T ss_pred hHHHHhh
Confidence 4565554
No 119
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=38.61 E-value=29 Score=27.62 Aligned_cols=42 Identities=26% Similarity=0.493 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CChhhhhHHhCCCC--CCChhhhhhhhhhccCC
Q 018768 14 LLRAYVKQYGP-------KEWSFVSQRMNTPL--NRDAKSCLERWKNYLKP 55 (350)
Q Consensus 14 ~L~~~V~kyg~-------~~W~~IA~~l~~~~--~Rt~~qCr~Rw~n~L~p 55 (350)
.|..+|.+.|. +.|..|+..|+-+. +....+.+..|.++|.|
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 57777877763 46999999997422 22345566667666643
No 120
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=37.48 E-value=1.2e+02 Score=31.62 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 018768 274 REKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRL 331 (350)
Q Consensus 274 r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~ 331 (350)
+.-+||+|.=|| |++.|+.-...-=.|=|-..-+|||=|.+|-.|+-|-.++++++|
T Consensus 349 k~~~eeLESIVR-iKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl 405 (446)
T PF07227_consen 349 KPQIEELESIVR-IKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKL 405 (446)
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345666665554 444444444433345566678999999999999999999999987
No 121
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=36.02 E-value=45 Score=38.36 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCC---------CCCCChhhhhhhhh
Q 018768 3 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNT---------PLNRDAKSCLERWK 50 (350)
Q Consensus 3 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~---------~~~Rt~~qCr~Rw~ 50 (350)
++..||.|||.-|.-.+.+||.++|.+|-..+.. ...||+..+..|-.
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~ 981 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCD 981 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHH
Confidence 4557999999999999999999999999776632 02466666665543
No 122
>PLN02372 violaxanthin de-epoxidase
Probab=34.80 E-value=4.5e+02 Score=27.37 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchH
Q 018768 280 IEAKMKALRDEQRATLDRIEAEYREQIAGLRRDA 313 (350)
Q Consensus 280 ~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rda 313 (350)
++.+++.|...+..|+..+-.|-.++|..|...|
T Consensus 408 ~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~ 441 (455)
T PLN02372 408 LEEGLKELEQDEENFLKELSKEEKELLEKLKMEA 441 (455)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444555555555555544444444444444333
No 123
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=34.55 E-value=70 Score=28.53 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018768 67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 67 D~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
...++.+..-.|-.+..||..+ |-|...|+++|..+..+-..
T Consensus 140 ~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~l~~ 181 (185)
T PF07638_consen 140 QRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAWLRR 181 (185)
T ss_pred HHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3444455455677899999999 99999999999988765543
No 124
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=34.46 E-value=48 Score=33.73 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhh-HHhCCCCCCChhhhhhhhhh
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVS-QRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA-~~l~~~~~Rt~~qCr~Rw~n 51 (350)
.||.+|-..+-+.++.|| +++..|- ..+. +|+...|..-|+-
T Consensus 279 ~wsEeEcr~FEegl~~yG-KDF~lIr~nkvr---tRsvgElVeyYYl 321 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYG-KDFHLIRANKVR---TRSVGELVEYYYL 321 (445)
T ss_pred cCCHHHHHHHHHHHHHhc-ccHHHHHhcccc---cchHHHHHHHHHH
Confidence 599999999999999999 7888885 4566 7999999988864
No 125
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=34.39 E-value=26 Score=26.39 Aligned_cols=25 Identities=24% Similarity=0.743 Sum_probs=20.6
Q ss_pred ChhhhhHHhCCCCCCChhhhhhhhhhc
Q 018768 26 EWSFVSQRMNTPLNRDAKSCLERWKNY 52 (350)
Q Consensus 26 ~W~~IA~~l~~~~~Rt~~qCr~Rw~n~ 52 (350)
.|..||..++. .-+..+|+.||.+.
T Consensus 28 aw~~Ia~~l~~--~~~~~~~~~~w~~L 52 (85)
T PF10545_consen 28 AWQEIARELGK--EFSVDDCKKRWKNL 52 (85)
T ss_pred HHHHHHHHHcc--chhHHHHHHHHHHH
Confidence 49999999984 46788899999874
No 126
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=33.47 E-value=62 Score=29.10 Aligned_cols=28 Identities=46% Similarity=0.572 Sum_probs=21.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhHHHHhh
Q 018768 266 ESEKACRRREK-MEEIEAKMKALRDEQRA 293 (350)
Q Consensus 266 e~e~~~~~r~~-~ee~e~~~~~l~~e~~~ 293 (350)
+|-+++=-||. +||||.|+.-|||=|-|
T Consensus 149 ~sAReeL~REELiEEIEQkVGGLRELEEa 177 (180)
T PLN00180 149 ESARAELWREELIEEIEQKVGGLRELEEA 177 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 55566666666 49999999999996654
No 127
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=33.45 E-value=60 Score=22.69 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhh
Q 018768 9 AEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKN 51 (350)
Q Consensus 9 ~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n 51 (350)
++++..+..+..-.| .+|.+||..++ .+...++.+..+
T Consensus 12 ~~~~r~i~~l~~~~g-~s~~eIa~~l~----~s~~~v~~~l~r 49 (54)
T PF08281_consen 12 PERQREIFLLRYFQG-MSYAEIAEILG----ISESTVKRRLRR 49 (54)
T ss_dssp -HHHHHHHHHHHTS----HHHHHHHCT----S-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCHHHHHHHHC----cCHHHHHHHHHH
Confidence 345555555555556 68999999996 898888877654
No 128
>PF04795 PAPA-1: PAPA-1-like conserved region; InterPro: IPR006880 This is a group of proteins with a conserved C-terminal region which is found in PAPA-1, a PAP-1 binding protein, Q9C086 from SWISSPROT.
Probab=33.42 E-value=59 Score=26.19 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhH
Q 018768 266 ESEKACRRREKMEEIEAKMKALRDEQRATLDRI 298 (350)
Q Consensus 266 e~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~ 298 (350)
=+|+|+|||.-+| +.+.||.+..++||
T Consensus 6 raE~ArkRk~~~e------Kk~EEeK~eTInKL 32 (89)
T PF04795_consen 6 RAENARKRKNQSE------KKLEEEKMETINKL 32 (89)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3789999998876 67888999999988
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.01 E-value=2.1e+02 Score=31.05 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHH
Q 018768 276 KMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKE 317 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke 317 (350)
..|.+++++.+.-+ .+..|+++-.+..++|+.|.+..+..+
T Consensus 95 ElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 95 ELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555322 334555555555555555555444433
No 130
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.67 E-value=94 Score=32.67 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHH
Q 018768 257 RLRRVELQLESEKA 270 (350)
Q Consensus 257 rl~~~e~qle~e~~ 270 (350)
++..||+||+.+|.
T Consensus 77 kasELEKqLaaLrq 90 (475)
T PRK13729 77 TAAQMQKQYEEIRR 90 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777643
No 131
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=32.29 E-value=75 Score=25.39 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCC
Q 018768 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGI 57 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i 57 (350)
+.|..+..++...+...+..||+.++ -+...|+.+.....+.++
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~----~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVG----LSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC----cCHHHHHHHHHHHHHCCC
Confidence 56888889999988889999999996 899999999887665543
No 132
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=32.28 E-value=89 Score=33.73 Aligned_cols=109 Identities=28% Similarity=0.337 Sum_probs=68.8
Q ss_pred chhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHH---------------HHH--------H-------HH
Q 018768 226 ENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEK---------------ACR--------R-------RE 275 (350)
Q Consensus 226 ~~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~---------------~~~--------~-------r~ 275 (350)
|.+.-+.|-.+.+||=+|--|=+---=.|+-.| ..||.-+- |+| + =.
T Consensus 560 DrLdt~~LN~hL~~lM~GLTAKVFRTYNASiTl---qeqL~~lt~p~~~v~~KIl~YnrANr~VAIlCNHQR~v~K~h~~ 636 (759)
T KOG0981|consen 560 DRLDTSSLNKHLQELMDGLTAKVFRTYNASITL---QEQLDKLTNPDGNVAAKILSYNRANRTVAILCNHQRAVSKTHEK 636 (759)
T ss_pred hhhchHHHHHHHHHHhccchhhhhhhcchhhHH---HHHHHhccCCCccHHHHHHHHhhccceeeeeecccccCCccHHH
Confidence 334556777888888888766554444555443 44554332 222 1 24
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018768 276 KMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCR 341 (350)
Q Consensus 276 ~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~~~~~ 341 (350)
-||-+..||+||++. |...|++|+---++----+-.|+.|-+|+|-.+..||-.-|++|.++
T Consensus 637 smekl~~kI~~~keq----l~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q 698 (759)
T KOG0981|consen 637 SMEKLAEKIKAKKEQ----LKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQ 698 (759)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999987 55556555433333222234567778899999999988877776554
No 133
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=32.22 E-value=1.1e+02 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 018768 260 RVELQLESEKACRRREKMEEIEAKMKALRDEQR 292 (350)
Q Consensus 260 ~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~ 292 (350)
+-++|-+.|..+.+--|++||+.||+-|++.-.
T Consensus 6 ~Ek~~k~eElkrlK~lK~~Ei~~kl~kik~~~G 38 (101)
T PF05178_consen 6 EEKQEKEEELKRLKNLKRKEIEEKLEKIKEVAG 38 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677788888888899999999999987655
No 134
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=32.10 E-value=3.2e+02 Score=23.31 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018768 292 RATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMG 339 (350)
Q Consensus 292 ~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~~~ 339 (350)
...+.+.+.+|+.....++++.+..++++...=..+ +-++++.|+
T Consensus 82 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~---i~~~v~~~a 126 (158)
T PF03938_consen 82 QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKK---INKAVEEYA 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345556677777777777777777777766554443 455555554
No 135
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.88 E-value=55 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=14.2
Q ss_pred HHhhhhhhHHHHHHHHHhhhhc
Q 018768 290 EQRATLDRIEAEYREQIAGLRR 311 (350)
Q Consensus 290 e~~~~~~~~e~~y~e~~~~l~r 311 (350)
+|+..|-..=..|.++|..||+
T Consensus 43 ~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 3444444444478888888887
No 136
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=31.56 E-value=4.3e+02 Score=24.52 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHH---------HHHHHHHHHHHH----------HHHHhHH
Q 018768 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKA---------CRRREKMEEIEA----------KMKALRD 289 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~---------~~~r~~~ee~e~----------~~~~l~~ 289 (350)
.+..|-.++++++..+..+..+-+.+.-.+..+..+|+--|. .+-+.|++..++ |+++--.
T Consensus 92 v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~ 171 (251)
T cd07653 92 VCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANAN 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence 457788899999999999999998888888888777764321 222344433321 3333334
Q ss_pred HHhhhhhhHHHHHHHHHhhhh
Q 018768 290 EQRATLDRIEAEYREQIAGLR 310 (350)
Q Consensus 290 e~~~~~~~~e~~y~e~~~~l~ 310 (350)
.-...+.+-+.+|..+|..+-
T Consensus 172 k~~~~~~~a~~~Y~~~l~~~N 192 (251)
T cd07653 172 LKTQAAEEAKNEYAAQLQKFN 192 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556778899999998883
No 137
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.20 E-value=64 Score=28.38 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 64 DEEQHLVIHLQAKHG-NKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 64 ~EED~~Li~lv~~~G-~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.+-|.+|+.+.++.| -.|+.||+.+ |=|...|++|++.+.+...
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 356778887777777 4599999999 8899999999999988765
No 138
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.16 E-value=6.8e+02 Score=27.69 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhchHHHHHHHH
Q 018768 300 AEYREQIAGLRRDAEAKEQKL 320 (350)
Q Consensus 300 ~~y~e~~~~l~rdae~ke~k~ 320 (350)
++-...+..||||.-.||.-+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444566777766666544
No 139
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.84 E-value=4.9e+02 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=15.2
Q ss_pred HhHHHHhhhhhhHHHHHHHHHhhhhc
Q 018768 286 ALRDEQRATLDRIEAEYREQIAGLRR 311 (350)
Q Consensus 286 ~l~~e~~~~~~~~e~~y~e~~~~l~r 311 (350)
.+++|-...+.....+-++.+..|+.
T Consensus 565 ~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 565 ELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666666666664
No 140
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=30.76 E-value=62 Score=27.47 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhccCCCCCCC
Q 018768 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKG 60 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L~p~i~kg 60 (350)
+-|.++..+.+..+...+..||+.++ -+...|+.|-++..+.++.+|
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lg----lS~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVG----LSPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC----CCHHHHHHHHHHHHHCCceee
Confidence 56888899999999889999999997 999999999988777665443
No 141
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=29.81 E-value=1.3e+02 Score=22.15 Aligned_cols=34 Identities=26% Similarity=0.180 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHH
Q 018768 234 MECCRELEEGHRAWAAHKKEAAWRLRRVELQLES 267 (350)
Q Consensus 234 ~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~ 267 (350)
..||.=|-.=++....|=+||.==++++|+||.+
T Consensus 16 eaYc~~L~kykeeL~~p~~EA~~f~~~ie~qL~~ 49 (52)
T PF03791_consen 16 EAYCDMLVKYKEELQRPFQEAMEFCREIEQQLSS 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578878777888888889999999999999975
No 142
>PRK11637 AmiB activator; Provisional
Probab=29.44 E-value=5.9e+02 Score=25.88 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHHhhhhhhHHHH---HHHHHhhhhchHHHHHHHHHH
Q 018768 280 IEAKMKALRDEQRATLDRIEAE---YREQIAGLRRDAEAKEQKLAE 322 (350)
Q Consensus 280 ~e~~~~~l~~e~~~~~~~~e~~---y~e~~~~l~rdae~ke~k~~e 322 (350)
--+++.+.+.+....+..++.+ +..+|+.|++|.+.-+..|++
T Consensus 206 ~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 206 QQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555655555555554 445778888877777666664
No 143
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.77 E-value=2.6e+02 Score=27.76 Aligned_cols=14 Identities=14% Similarity=0.409 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHh
Q 018768 97 GKWWEVFKEKQQRE 110 (350)
Q Consensus 97 rnRW~~~l~k~~~~ 110 (350)
|.||-.+.+..++.
T Consensus 231 R~RWgqyfrsmK~s 244 (383)
T KOG4577|consen 231 RTRWGQYFRSMKRS 244 (383)
T ss_pred hhHHHHHHHHhhcc
Confidence 45887777765544
No 144
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.74 E-value=2.9e+02 Score=22.95 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhhhhhcc
Q 018768 2 KERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYL 53 (350)
Q Consensus 2 kkkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~Rw~n~L 53 (350)
+++.+||.|+-...+..+...| .+=..||..++ =+. +-..+|.+-+
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~g----Is~-~tl~~W~r~y 53 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG-MTVSLVARQHG----VAA-SQLFLWRKQY 53 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHC----cCH-HHHHHHHHHH
Confidence 4568899999877777776666 56789999987 343 3456777654
No 145
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.56 E-value=2.5e+02 Score=31.70 Aligned_cols=11 Identities=36% Similarity=0.208 Sum_probs=5.1
Q ss_pred hhhhcCCCCCh
Q 018768 83 KIAAEVPGRTA 93 (350)
Q Consensus 83 ~IA~~lpgRT~ 93 (350)
.|++.+-+|+.
T Consensus 431 cISqIvlHr~~ 441 (1102)
T KOG1924|consen 431 CISQIVLHRTG 441 (1102)
T ss_pred HHHHHHHhcCC
Confidence 44554444443
No 146
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=28.30 E-value=1e+02 Score=24.83 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=28.1
Q ss_pred HHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 70 VIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 70 Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
++.++-..|..+..||+.+ |=|...|+++....+++-.
T Consensus 118 ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~kl~ 155 (158)
T TIGR02937 118 VLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKKLR 155 (158)
T ss_pred HHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3334334577899999999 6699999998888776643
No 147
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=28.20 E-value=3e+02 Score=30.37 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 018768 259 RRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHL-RLTKFLEQ 337 (350)
Q Consensus 259 ~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~-~~~~~~~~ 337 (350)
..=+||-|+||..|||.+-+ -.+|-.-++++.+.-|+|-|.--| ....=|+-+|.||.--+|+=+.+|. -++||+-.
T Consensus 304 d~KKqqkekEkeEKrrKdE~-Ek~kKqeek~KR~k~~Erkee~~r-k~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk 381 (811)
T KOG4364|consen 304 DIKKQQKEKEKEEKRRKDEQ-EKLKKQEEKQKRAKIMERKEEKSR-KSDEERKKLESKEVEAQELRKKRHEAEIGKFFQK 381 (811)
T ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 34567888888888776544 445555566666655666553222 2345577788888888888888875 46888875
Q ss_pred hc
Q 018768 338 MG 339 (350)
Q Consensus 338 ~~ 339 (350)
+.
T Consensus 382 ~~ 383 (811)
T KOG4364|consen 382 ID 383 (811)
T ss_pred cc
Confidence 53
No 148
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=27.93 E-value=1.5e+02 Score=23.63 Aligned_cols=53 Identities=28% Similarity=0.495 Sum_probs=33.0
Q ss_pred HhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Q 018768 286 ALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQK-------LAEQWSAKHLRLTKFLEQMG 339 (350)
Q Consensus 286 ~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k-------~~e~w~~~~~~~~~~~~~~~ 339 (350)
.|-+++++.|.-+..+-+.+|+. .-.++..... +++.....|.+|+..+.+|.
T Consensus 18 ~ld~~~~~~L~~l~~dIe~~L~~-~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~ 77 (85)
T PF14357_consen 18 PLDEETRAELSSLDDDIEAQLAE-EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIM 77 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 35666666666666666666665 2222333334 45556679999998888753
No 149
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.78 E-value=3.7e+02 Score=22.65 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=25.6
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHhhhhhhH
Q 018768 245 RAWAAHKKEAAWRLRRVELQLESEKACRRR---EKMEEIEAKMKALRDEQRATLDRI 298 (350)
Q Consensus 245 ~~~~~~kkea~~rl~~~e~qle~e~~~~~r---~~~ee~e~~~~~l~~e~~~~~~~~ 298 (350)
.+..+.+-+-.-+|.-|+.-||.+|..+-. +| ++.++-...|+.+......||
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqk-d~L~~~l~~L~~q~~s~~qr~ 60 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQK-DQLRNALQSLQAQNASRNQRI 60 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566777777777777765422 22 235555666666555555544
No 150
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=27.58 E-value=1.3e+02 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHhCCCCCCChhhhhhh
Q 018768 10 EEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLER 48 (350)
Q Consensus 10 EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~~qCr~R 48 (350)
-|.+.|.+++..++ ++....|..++ =+....+.+
T Consensus 5 ~E~~~i~~aL~~~~-gn~~~aA~~Lg----isr~tL~~k 38 (42)
T PF02954_consen 5 FEKQLIRQALERCG-GNVSKAARLLG----ISRRTLYRK 38 (42)
T ss_dssp HHHHHHHHHHHHTT-T-HHHHHHHHT----S-HHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHC----CCHHHHHHH
Confidence 37788999999999 78999999997 444444443
No 151
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.48 E-value=1.3e+02 Score=24.33 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018768 229 LVSELMECCRELEEGHRAWAAHKKE--AAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQ 291 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kke--a~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~ 291 (350)
.+..|-..+..|+...+.-.-+-=+ .-=.|..||+|||.--.+=|-.|++-+-..|..|+..+
T Consensus 20 e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 20 EIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555443332211100 12257889999998877766667776666666666543
No 152
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.31 E-value=4.2e+02 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.045 Sum_probs=5.7
Q ss_pred hhhhhhhhhhHHHHH
Q 018768 251 KKEAAWRLRRVELQL 265 (350)
Q Consensus 251 kkea~~rl~~~e~ql 265 (350)
+.+|.=-+...|.+|
T Consensus 55 ~~ea~~~~~e~e~~l 69 (164)
T PRK14471 55 RKEMQNLQADNERLL 69 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333433333333333
No 153
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=27.11 E-value=62 Score=25.80 Aligned_cols=29 Identities=14% Similarity=0.468 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCChhhh
Q 018768 67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRL 96 (350)
Q Consensus 67 D~~Li~lv~~~G~~W~~IA~~lpgRT~~q~ 96 (350)
|..|..+....|..|..+|..+ |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999988 5444443
No 154
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=27.00 E-value=97 Score=27.50 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcC----CCCChhhhHHHHHHHH
Q 018768 58 KKGSLTDEEQHLVIHLQAKHGNKWKKIAAEV----PGRTAKRLGKWWEVFK 104 (350)
Q Consensus 58 ~kg~WT~EED~~Li~lv~~~G~~W~~IA~~l----pgRT~~q~rnRW~~~l 104 (350)
....-|..|..-|..|+.+||.++...+.-. --.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 3456889999999999999999999888633 2479999998887654
No 155
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=26.87 E-value=1.1e+02 Score=34.67 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccCCCC--CCChhhhHHHHHHHHhhhccCCC--cccccCCCCcccCCCCCCCCCCCCCcCC
Q 018768 95 RLGKWWEVFKEKQQREQKDSIRIVD--PIDEHKYDQILETFAEKLVNNHS--FVMATSNGGFLHTDPATPPNLLPPWLSN 170 (350)
Q Consensus 95 q~rnRW~~~l~k~~~~~k~s~~~~~--p~~~~~~d~iletfa~klv~~~p--~~msas~~~~~~~~s~~~ss~lPp~~s~ 170 (350)
.+.|.|-.+++.-+.+.-.....+. ......|.+.++.|...+-..-. .+.+.+++..+|..+|..+...||-.++
T Consensus 147 ~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~~~~~s~l~vtTP~gp~s~~pv~ss 226 (1163)
T COG5602 147 EIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLPQPNGSRLHVTTPQGPLSSPPVQSS 226 (1163)
T ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecCCCCCCeeeecCCCCCCCCCCcccc
Confidence 4566666666665433222211111 11234556677766554422211 1122234466777666544444542222
Q ss_pred CCCCCCCCCCCceeccCCCCCCCCCC
Q 018768 171 SSSNIRPPSPSVTLSLSPSTVAAAPP 196 (350)
Q Consensus 171 s~sss~psSPSVtLSLsPs~~~~~~~ 196 (350)
.-.+........+.++.|++.++-|.
T Consensus 227 ~y~a~~n~~qrts~p~lps~~Q~e~s 252 (1163)
T COG5602 227 YYVAPCNHDQRTSHPTLPSDSQPEPS 252 (1163)
T ss_pred cccccccccccccCCCCccccCCCCC
Confidence 22222223344456666887776554
No 156
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.79 E-value=5.8e+02 Score=26.93 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=50.3
Q ss_pred CCchh--hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHH
Q 018768 224 CGENL--LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRR-EKMEEIEAKMKALRDE 290 (350)
Q Consensus 224 ~~~~~--~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r-~~~ee~e~~~~~l~~e 290 (350)
++.+. .|+.|++.-+-.++--+-|-.||+--.=...-|--+|+++-..--| -+++|.|+-+.|+=+|
T Consensus 291 geayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~ee 360 (521)
T KOG1937|consen 291 GEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEE 360 (521)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 44444 7888899999999999999999987666666666677766665555 6777778777777655
No 157
>PRK10203 hypothetical protein; Provisional
Probab=26.68 E-value=2.4e+02 Score=24.25 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHh
Q 018768 269 KACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIA 307 (350)
Q Consensus 269 ~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~ 307 (350)
+..+.+.++.+++.|++-+.+. ..++. .+|+++|.
T Consensus 82 ~~~~~~k~L~~l~lr~~~~~~~-~~~~~---~~Y~~ki~ 116 (122)
T PRK10203 82 QYQEVSRRLSLLELKLRQAGLS-TDFLR---GDYADKLL 116 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhhH---HHHHHHHH
Confidence 3345778899999998876443 33444 78998875
No 158
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.56 E-value=9.9e+02 Score=27.18 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhHHHHh-hhhhh
Q 018768 233 LMECCRELEEGHRAWAA-HKKEA 254 (350)
Q Consensus 233 l~~~~~elee~~~~~~~-~kkea 254 (350)
+.-.--|||--|++... ++||+
T Consensus 322 y~kGqaELerRRq~leeqqqrer 344 (1118)
T KOG1029|consen 322 YEKGQAELERRRQALEEQQQRER 344 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444577777777653 44444
No 159
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=26.41 E-value=1.3e+02 Score=19.68 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHH
Q 018768 67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKE 105 (350)
Q Consensus 67 D~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~ 105 (350)
+..++.+.-..|..+..||..+ |=+...|+.+......
T Consensus 15 ~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 15 EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRALK 52 (55)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4455555555677899999998 6788888776665443
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.15 E-value=2.1e+02 Score=31.59 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 018768 261 VELQLESEKACRR 273 (350)
Q Consensus 261 ~e~qle~e~~~~~ 273 (350)
||.||-.||..|+
T Consensus 507 lEkQL~eErk~r~ 519 (697)
T PF09726_consen 507 LEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666664443
No 161
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.04 E-value=6.8e+02 Score=27.98 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhc
Q 018768 235 ECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKM-EEIEAKMKALRDEQRATLDRIEAEYREQIAGLRR 311 (350)
Q Consensus 235 ~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~-ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~r 311 (350)
+.-.+||+-++...+.+.++.=.+.++|.+.+ ...+.+++. ++.+..+..+++|-...+.....+-++.+..|+.
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKE--ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555544442221 122223333 2334445566667777777777777777777764
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.97 E-value=1.1e+03 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=30.6
Q ss_pred CCCCchhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHH
Q 018768 222 PICGENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVE 262 (350)
Q Consensus 222 ~~~~~~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e 262 (350)
|..+....-.+|---.|+|.|--+.....|+|--=+|++||
T Consensus 218 ~l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Ele 258 (1243)
T KOG0971|consen 218 PLPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELE 258 (1243)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 43333444445777789999999999999999888887776
No 163
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=25.95 E-value=70 Score=28.62 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHH
Q 018768 61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW 100 (350)
.||.|..+.|.+|. .-|-.=++||..|.+.|.+.|.-+-
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~ 40 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKA 40 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhh
Confidence 59999999999887 4466678999999778988876543
No 164
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=25.65 E-value=3.1e+02 Score=25.31 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHhhhh
Q 018768 293 ATLDRIEAEYREQIAGLR 310 (350)
Q Consensus 293 ~~~~~~e~~y~e~~~~l~ 310 (350)
+-|.++++=|+|||+.|.
T Consensus 144 ~el~~~d~fykeql~~le 161 (187)
T PF05300_consen 144 AELKKQDAFYKEQLARLE 161 (187)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999985
No 165
>PRK11519 tyrosine kinase; Provisional
Probab=25.45 E-value=2.7e+02 Score=30.61 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=49.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---------hhhhhHHHHHHHHHhhhhchHHHHHHHHHHHH
Q 018768 254 AAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQR---------ATLDRIEAEYREQIAGLRRDAEAKEQKLAEQW 324 (350)
Q Consensus 254 a~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~---------~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w 324 (350)
|.=-+.=|++||+ .-|.++++.|.++.+.|.+.. +.++.+ ++++.|++.| +.+++.|....
T Consensus 265 a~~a~~fL~~ql~-----~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~-~~l~~ql~~l----~~~~~~l~~~y 334 (719)
T PRK11519 265 ASKSLAFLAQQLP-----EVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSM-VNIDAQLNEL----TFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHh
Confidence 3344566777664 456778888888888887543 334444 4666666654 56677777788
Q ss_pred HHHHHHHHHHHHHh
Q 018768 325 SAKHLRLTKFLEQM 338 (350)
Q Consensus 325 ~~~~~~~~~~~~~~ 338 (350)
..+|..+..+..+.
T Consensus 335 ~~~hP~v~~l~~~~ 348 (719)
T PRK11519 335 TKEHPAYRTLLEKR 348 (719)
T ss_pred cccCcHHHHHHHHH
Confidence 88888777665544
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.11 E-value=6e+02 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHhhhhchHHHHHHHH
Q 018768 292 RATLDRIEAEYREQIAGLRRDAEAKEQKL 320 (350)
Q Consensus 292 ~~~~~~~e~~y~e~~~~l~rdae~ke~k~ 320 (350)
...+...|.+|++ |.||++.++.-.
T Consensus 362 ~~~~p~~e~~~~~----L~R~~~~~~~lY 386 (726)
T PRK09841 362 VSAMPSTQQEVLR----LSRDVEAGRAVY 386 (726)
T ss_pred HHhccHHHHHHHH----HHHHHHHHHHHH
Confidence 3445555555544 889999988543
No 167
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=24.83 E-value=1.6e+02 Score=24.03 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCC-ChhhhHHHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGR-TAKRLGKWWEVFKEKQ 107 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~~G~~W~~IA~~lpgR-T~~q~rnRW~~~l~k~ 107 (350)
...||.|.-..+++++..-|..=+.||+.+ |- +++++++++..+....
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~W~~~~~~~~ 53 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYKWRIQLQKGG 53 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHHHHHHHHHcc
Confidence 457999999999999999999889999999 64 7777777666655543
No 168
>PRK04217 hypothetical protein; Provisional
Probab=24.80 E-value=1.2e+02 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 61 SLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 61 ~WT~EED~~Li~lv~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.-|.++ ..++.+....|-....||+.+ |-|...|++++....++-.
T Consensus 42 ~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkLr 87 (110)
T PRK04217 42 FMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKVA 87 (110)
T ss_pred cCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 355555 677788877888899999999 9999999999987666654
No 169
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.76 E-value=4.6e+02 Score=26.27 Aligned_cols=66 Identities=30% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHhhhhhhH
Q 018768 233 LMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEE---IEAKMKALRDEQRATLDRI 298 (350)
Q Consensus 233 l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee---~e~~~~~l~~e~~~~~~~~ 298 (350)
|-+|-+.=||-||-.++-=||---.|+..|..|-.--..=.|.-.|| +|.|+|.|-||-.++..|.
T Consensus 332 ~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk 400 (406)
T KOG3859|consen 332 LGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRK 400 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888877777777777766643222222322222 6778888877777776654
No 170
>PRK13824 replication initiation protein RepC; Provisional
Probab=24.20 E-value=3.4e+02 Score=27.89 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hhhHHHHHHHHHh
Q 018768 229 LVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRAT-LDRIEAEYREQIA 307 (350)
Q Consensus 229 ~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~-~~~~e~~y~e~~~ 307 (350)
+++.|+.-..||++-.+...+. +-+.+.-.+....-| -+|..-|.+..+|.... .+.++..|.+.+.
T Consensus 140 DLsPL~~R~~El~~~A~~~~ae---------~~~~r~lr~~it~~r---Rdi~~li~~a~~~~~~~~w~~~~~~~~~i~~ 207 (404)
T PRK13824 140 DLAPLLARAEEFEALAEQVAAE---------RKALRRLRERLTLCR---RDIAKLIEAAIEEGVPGDWEGVEQRFRAIVA 207 (404)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 7899999999998866554432 112111111111111 23455555555555544 7889999999999
Q ss_pred hhhchHHHHH
Q 018768 308 GLRRDAEAKE 317 (350)
Q Consensus 308 ~l~rdae~ke 317 (350)
.|+|.+..-+
T Consensus 208 ~l~R~~~~~~ 217 (404)
T PRK13824 208 RLPRRATLAE 217 (404)
T ss_pred HcCCCCcHHH
Confidence 9999876443
No 171
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.14 E-value=7.9e+02 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=10.3
Q ss_pred HhhhhchHHHHHHH
Q 018768 306 IAGLRRDAEAKEQK 319 (350)
Q Consensus 306 ~~~l~rdae~ke~k 319 (350)
+..|.||++.++.-
T Consensus 357 l~~L~Re~~~~~~~ 370 (498)
T TIGR03007 357 LTQLNRDYEVNKSN 370 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 35678999888763
No 172
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=24.13 E-value=5.3e+02 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q 018768 325 SAKHLRLTKFLEQM 338 (350)
Q Consensus 325 ~~~~~~~~~~~~~~ 338 (350)
+.+|+|++|-|+.+
T Consensus 231 AK~ylri~Kgfd~~ 244 (523)
T KOG3837|consen 231 AKMYLRIVKGFDDA 244 (523)
T ss_pred HHHHHHHHHHHHHH
Confidence 45788888888853
No 173
>PHA03369 capsid maturational protease; Provisional
Probab=23.84 E-value=9.8e+02 Score=26.18 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=6.3
Q ss_pred HHHHHhHHHHh
Q 018768 282 AKMKALRDEQR 292 (350)
Q Consensus 282 ~~~~~l~~e~~ 292 (350)
..++-|+|||-
T Consensus 483 k~~kKlkeeqE 493 (663)
T PHA03369 483 KLVKKLKEEQE 493 (663)
T ss_pred HHHHHHHHHHH
Confidence 44566666654
No 174
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=23.78 E-value=2.9e+02 Score=22.48 Aligned_cols=71 Identities=15% Similarity=0.337 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHHHHHh----CC---CChhhhhHHhCCCC--CCChhhh-------hhhhhhccCCCCCCC---CCCHH
Q 018768 5 QRWRAEEDALLRAYVKQY----GP---KEWSFVSQRMNTPL--NRDAKSC-------LERWKNYLKPGIKKG---SLTDE 65 (350)
Q Consensus 5 g~WT~EED~~L~~~V~ky----g~---~~W~~IA~~l~~~~--~Rt~~qC-------r~Rw~n~L~p~i~kg---~WT~E 65 (350)
..||++++-.|.+.+-.| |. .+|..+...+..-+ .=+..|. +.||.+.... .+.| .++..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~~~ 83 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFSKP 83 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCCCH
Confidence 469999999999988877 42 25555444443111 2233443 4455555443 2223 58888
Q ss_pred HHHHHHHHHHH
Q 018768 66 EQHLVIHLQAK 76 (350)
Q Consensus 66 ED~~Li~lv~~ 76 (350)
-|..+.+|..+
T Consensus 84 hd~~~f~Lsk~ 94 (98)
T PF04504_consen 84 HDRRLFELSKK 94 (98)
T ss_pred hHHHHHHHHHH
Confidence 88888887654
No 175
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=23.43 E-value=85 Score=24.03 Aligned_cols=21 Identities=33% Similarity=0.881 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCChhhhhHHhC
Q 018768 12 DALLRAYVKQYGPKEWSFVSQRMN 35 (350)
Q Consensus 12 D~~L~~~V~kyg~~~W~~IA~~l~ 35 (350)
+.+|.++|..|| |...++.|+
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~ 32 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERIN 32 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTT
T ss_pred HHHHHHHHHHhC---HHHHHhhcc
Confidence 578999999999 999999987
No 176
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=23.41 E-value=1.5e+02 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018768 75 AKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 75 ~~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
-..|-.+..||..+ |-|...|+++....+++-..
T Consensus 141 ~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 174 (182)
T PRK09652 141 EIEGLSYEEIAEIM-GCPIGTVRSRIFRAREALRA 174 (182)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 33466799999999 88999999888776665443
No 177
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=23.36 E-value=3.8e+02 Score=22.16 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=34.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHH
Q 018768 251 KKEAAWRLRRVELQLESEKACRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQ 318 (350)
Q Consensus 251 kkea~~rl~~~e~qle~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~ 318 (350)
|.|--||+.||| |-...--.+..+|+-+++.. ..-.+++.. .|..++||-|.-|+
T Consensus 6 r~e~e~Ri~rLE-----endk~i~~~L~~Ik~gq~~q----e~v~~kld~----tlD~i~reRe~dee 60 (98)
T PF11166_consen 6 RHEHEWRIRRLE-----ENDKTIFNKLDEIKDGQHDQ----ELVNQKLDR----TLDEINREREEDEE 60 (98)
T ss_pred hhhHHHHHHHHH-----HhhHHHHHHHHHHHHhHhhH----HHHHHHHHh----hHHHHHHHHHHHHH
Confidence 458889999999 44555667888888887653 233344442 34446776554433
No 178
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=23.31 E-value=1.1e+02 Score=23.65 Aligned_cols=41 Identities=32% Similarity=0.520 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhHHHHhhhhhhHHH-HHHH
Q 018768 264 QLESEKACRRREKM---EEIEAKMKALRDEQRATLDRIEA-EYRE 304 (350)
Q Consensus 264 qle~e~~~~~r~~~---ee~e~~~~~l~~e~~~~~~~~e~-~y~e 304 (350)
=||+||.....+.- .++.+.|..||.+=-..++.++. ||.-
T Consensus 22 ~Leaek~~~eL~~seeY~eL~~ri~~lr~~ld~~~~~~d~~Df~~ 66 (71)
T PF08663_consen 22 VLEAEKSEAELEESEEYQELEDRIEELRAELDDTLDEFDDDDFEA 66 (71)
T ss_pred HHHhcCCHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 37888888766554 56889999999998888888875 4443
No 179
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=23.18 E-value=1.4e+02 Score=22.43 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=27.4
Q ss_pred HhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHH
Q 018768 286 ALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLA 321 (350)
Q Consensus 286 ~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~ 321 (350)
+|.++=..++..-+.+|.++|...--|.++.|.++-
T Consensus 3 al~~~v~~~l~~s~~~Y~~~l~~y~~~~~~~~A~~~ 38 (67)
T PF01099_consen 3 ALEDVVTKFLFGSPEEYKESLQKYNPPPEAVEAKLE 38 (67)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHCC---HHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 566666788888999999999999999999998874
No 180
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.07 E-value=5.7e+02 Score=25.30 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhhHH------HHHHHHHhhhhchHH
Q 018768 270 ACRRREKMEEIEAKMKALRDEQRATLDRIE------AEYREQIAGLRRDAE 314 (350)
Q Consensus 270 ~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e------~~y~e~~~~l~rdae 314 (350)
+...-++..|+=+.|.+|+.+-..+-.+|. ++|.+++..+=+.|+
T Consensus 153 ~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~D 203 (294)
T COG1340 153 ALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD 203 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555544433333332 455566555544443
No 181
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.00 E-value=2.2e+02 Score=32.86 Aligned_cols=39 Identities=33% Similarity=0.548 Sum_probs=20.2
Q ss_pred hhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 018768 258 LRRVELQLE--SEKACRRREKMEEIEAKMKALRDEQRATLD 296 (350)
Q Consensus 258 l~~~e~qle--~e~~~~~r~~~ee~e~~~~~l~~e~~~~~~ 296 (350)
+++|+|||| +|--.+-|+.++-.||.|.-||.|...+++
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 222334455555556666666666555543
No 182
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=22.68 E-value=2.7e+02 Score=20.92 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 018768 274 REKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHL 329 (350)
Q Consensus 274 r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~ 329 (350)
|..+.+|+..|=.|=.+=...+..| ++|+.. .|+--+....|+++.+.|...-.
T Consensus 1 R~~Id~iD~~ii~Ll~~R~~l~~~i-~~~K~~-~~~~i~d~~Re~~vl~~~~~~a~ 54 (79)
T smart00830 1 RAEIDAIDDQILALLAERAALAREV-ARLKAK-NGLPIYDPEREAEVLERLRALAE 54 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-CCCCCCChHHHHHHHHHHHHHcc
Confidence 5678889999888887777777777 788877 66777778888888888766543
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.63 E-value=5.5e+02 Score=25.33 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHhhhhchHH
Q 018768 295 LDRIEAEYREQIAGLRRDAE 314 (350)
Q Consensus 295 ~~~~e~~y~e~~~~l~rdae 314 (350)
|+..|.+|-.....+.++.-
T Consensus 90 l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 90 LDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555454444443
No 184
>PRK11098 microcin B17 transporter; Reviewed
Probab=22.36 E-value=1e+02 Score=31.69 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhhhhchHHHHHHH
Q 018768 296 DRIEAEYREQIAGLRRDAEAKEQK 319 (350)
Q Consensus 296 ~~~e~~y~e~~~~l~rdae~ke~k 319 (350)
+|.|+|||=.|.-+|-+||..|.+
T Consensus 276 qr~EAdFR~~LVrvrenaE~~E~~ 299 (409)
T PRK11098 276 QRVEAAYRKELVYGEDDADRATPP 299 (409)
T ss_pred HHHHHHHHHHHhHhhhhhhHHHHH
Confidence 468999999999999999955543
No 185
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.04 E-value=5.1e+02 Score=22.39 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018768 277 MEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLE 336 (350)
Q Consensus 277 ~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~ 336 (350)
.++++.-|+-+++-+.. +.+||++|-++++.++-.++..-..|..+=..-...|..|.+
T Consensus 2 ~~~a~~al~ki~~l~~~-~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 2 REEADWALRKIAELQRE-IARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=21.97 E-value=98 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCChhhh
Q 018768 67 QHLVIHLQAKHGNKWKKIAAEVPGRTAKRL 96 (350)
Q Consensus 67 D~~Li~lv~~~G~~W~~IA~~lpgRT~~q~ 96 (350)
|..|..+....|..|..+|..| |=+...|
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI 32 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEI 32 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHH
Confidence 5678888999999999999998 5555544
No 187
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=21.87 E-value=1.1e+02 Score=27.27 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHHHhCCCChhhhhHHhCCCCCCCh
Q 018768 6 RWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDA 42 (350)
Q Consensus 6 ~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~~~Rt~ 42 (350)
.||+|..+.|+++... | .+=.+||..|+ ++.|++
T Consensus 2 ~Wtde~~~~L~~lw~~-G-~SasqIA~~lg-~vsRnA 35 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-G-LSASQIARQLG-GVSRNA 35 (162)
T ss_pred CCCHHHHHHHHHHHHc-C-CCHHHHHHHhC-Ccchhh
Confidence 5999999999999965 4 46799999998 224443
No 188
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=21.63 E-value=1.6e+02 Score=24.94 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=25.2
Q ss_pred hCCchhhhhhcCCCCChhhhHHHHHHHHHHHH
Q 018768 77 HGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQ 108 (350)
Q Consensus 77 ~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~ 108 (350)
.|-.+..||..+ |-|...|+++....+++-.
T Consensus 140 ~~~~~~eIA~~l-gis~~tv~~~~~ra~~~lr 170 (179)
T PRK11924 140 EGLSYREIAEIL-GVPVGTVKSRLRRARQLLR 170 (179)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 466799999999 8899999999887666644
No 189
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=21.12 E-value=2.3e+02 Score=25.12 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.1
Q ss_pred HhCCchhhhhhcCCCCChhhhHHHHHHHHHHHHH
Q 018768 76 KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 109 (350)
Q Consensus 76 ~~G~~W~~IA~~lpgRT~~q~rnRW~~~l~k~~~ 109 (350)
..|-....||..+ |-|...|++++...+++-..
T Consensus 148 ~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~Lr~ 180 (192)
T PRK09643 148 MQGYSVADAARML-GVAEGTVKSRCARGRARLAE 180 (192)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3466799999999 88999999998766665443
No 190
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.03 E-value=7.6e+02 Score=26.28 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHH
Q 018768 225 GENLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLES--EKACRRREKMEEIEAKMKALRDEQRATLDRIEAEY 302 (350)
Q Consensus 225 ~~~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~--e~~~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y 302 (350)
++...+..+-+-..+|++....-...-.+..=..+.|+.+++. ++-..-.+..++|...|..||.++..+-++|+ .|
T Consensus 345 ~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~-~~ 423 (569)
T PRK04778 345 SELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLE-RY 423 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHhhhhc
Q 018768 303 REQIAGLRR 311 (350)
Q Consensus 303 ~e~~~~l~r 311 (350)
++.|..++|
T Consensus 424 ~~~L~~ikr 432 (569)
T PRK04778 424 RNKLHEIKR 432 (569)
T ss_pred HHHHHHHHH
No 191
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.98 E-value=3.4e+02 Score=19.86 Aligned_cols=54 Identities=31% Similarity=0.487 Sum_probs=33.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhh
Q 018768 255 AWRLRRVELQLESEKACRRREK--MEEIEAKMKALRDEQRATLDRIEAEYREQIAGL 309 (350)
Q Consensus 255 ~~rl~~~e~qle~e~~~~~r~~--~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l 309 (350)
..+.+|.++--+|=+.||.|-| |++.|.++..|-.+-......++ .+..++..|
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~-~L~~~~~~L 59 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELE-QLKKEIQSL 59 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4456677777777777776654 58888888888766554443332 344444444
No 192
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=20.78 E-value=7.1e+02 Score=23.44 Aligned_cols=56 Identities=18% Similarity=0.422 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018768 271 CRRREKMEEIEAKMKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMGCRPRLS 345 (350)
Q Consensus 271 ~~~r~~~ee~e~~~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e~w~~~~~~~~~~~~~~~~~~~~~ 345 (350)
.+-+..+++++..|.-.|.---.+|..++....+ .| .+-.-|..|+.++|+...+.
T Consensus 163 ~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~--------~e-----------~~~~TM~eL~~~l~ID~~LI 218 (221)
T PF10376_consen 163 YRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE--------EE-----------GEKFTMGELIKRLGIDYDLI 218 (221)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cc-----------ccCccHHHHHHHhCCCcccc
Confidence 3444555566666666666655556555544443 00 01345777888888765543
No 193
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.65 E-value=1.4e+03 Score=26.81 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 018768 59 KGSLTDEEQHLVIHLQAK 76 (350)
Q Consensus 59 kg~WT~EED~~Li~lv~~ 76 (350)
.-..|+++-..+-.+-..
T Consensus 460 ~~~~~~e~~~~~~~~~~~ 477 (1201)
T PF12128_consen 460 NPQYTEEEKEQLEQADKR 477 (1201)
T ss_pred CcCCCHHHHHHHHHHHHH
Confidence 445666665555544433
No 194
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.62 E-value=8.4e+02 Score=24.21 Aligned_cols=94 Identities=32% Similarity=0.443 Sum_probs=53.7
Q ss_pred hhhhhHHHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHH--HHHHHHH-------HHHHHHHHHHhHHHHhhhhhh
Q 018768 227 NLLVSELMECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEK--ACRRREK-------MEEIEAKMKALRDEQRATLDR 297 (350)
Q Consensus 227 ~~~~~~l~~~~~elee~~~~~~~~kkea~~rl~~~e~qle~e~--~~~~r~~-------~ee~e~~~~~l~~e~~~~~~~ 297 (350)
...+++ |+.+|-.||-||.-- =||+.-|..|---| +|+..+. .+..|.|-|.|--.++.-|++
T Consensus 267 srhlse-vqiakraeerrqiet-------erlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleq 338 (445)
T KOG2891|consen 267 SRHLSE-VQIAKRAEERRQIET-------ERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQ 338 (445)
T ss_pred hhhhhH-HHHHHHHHHHhhhhH-------HHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 346677 899999999887642 24443332222112 2222221 234455555554445555544
Q ss_pred H--HHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 018768 298 I--EAEYREQIAGLRRDAEAKEQKLAEQWSAKH 328 (350)
Q Consensus 298 ~--e~~y~e~~~~l~rdae~ke~k~~e~w~~~~ 328 (350)
+ |.--||.-+.-|.-||.||||=+|+-..-.
T Consensus 339 maeeekkr~eeaeerqraeekeq~eaee~~ra~ 371 (445)
T KOG2891|consen 339 MAEEEKKREEEAEERQRAEEKEQKEAEELERAR 371 (445)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3 334456667778889999999999876543
No 195
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.58 E-value=83 Score=25.60 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHhhH----HHHhhhhhhhhhh
Q 018768 228 LLVSELMECCRELEEGHR----AWAAHKKEAAWRL 258 (350)
Q Consensus 228 ~~~~~l~~~~~elee~~~----~~~~~kkea~~rl 258 (350)
..++||||-++++.+... ---.|-+||..||
T Consensus 56 vFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rrL 90 (90)
T PF04719_consen 56 VFVGEIVEEARDVQEEWGETGPLQPDHLREAYRRL 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHhC
Confidence 389999999999887321 2236888888776
No 196
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.46 E-value=1.1e+03 Score=26.22 Aligned_cols=63 Identities=29% Similarity=0.378 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhhhhhhHHHHHHHHHhhhhchHHHHHHHHHH
Q 018768 259 RRVELQLESEKACRRREKMEEIEAK---MKALRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAE 322 (350)
Q Consensus 259 ~~~e~qle~e~~~~~r~~~ee~e~~---~~~l~~e~~~~~~~~e~~y~e~~~~l~rdae~ke~k~~e 322 (350)
+|+|++++-.-.--.|--.++++-| ..-|+..+ ++++.-|..|.+|+-..|-|-+++-.|.-+
T Consensus 79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~q~e~~~n~~q~~~~k~~e 144 (716)
T KOG4593|consen 79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ-EALKGQEEKLQEQLERNRNQCQANLKKELE 144 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666554444444444444443 44467777 778888888888888877655554443333
No 197
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=20.08 E-value=68 Score=24.61 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCchhhhhh
Q 018768 69 LVIHLQAKHGNKWKKIAA 86 (350)
Q Consensus 69 ~Li~lv~~~G~~W~~IA~ 86 (350)
.|.+|.+.||++|..|-.
T Consensus 31 vl~~LL~lY~~nW~lIEe 48 (65)
T PF10440_consen 31 VLKNLLKLYDGNWELIEE 48 (65)
T ss_pred HHHHHHHHHcCCchhhhc
Confidence 467788889999999864
No 198
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.08 E-value=4.5e+02 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHhhhhchHHHHHHHHHHH
Q 018768 303 REQIAGLRRDAEAKEQKLAEQ 323 (350)
Q Consensus 303 ~e~~~~l~rdae~ke~k~~e~ 323 (350)
.+.|..|.+-.+.++..|-++
T Consensus 60 ~~ll~~l~~~~~~~~~~l~~q 80 (127)
T smart00502 60 KQLLEDLEEQKENKLKVLEQQ 80 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555443
Done!