BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018769
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z84|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1Z84|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|2Q4H|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4H|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
Length = 351
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/335 (61%), Positives = 260/335 (77%), Gaps = 9/335 (2%)
Query: 15 EIRKDPVNNRWVIFSPARAKRPTDFKAKXXXXXXXX-XXCPFCIGNEHECAPEIFRVPPD 73
E+RKDPV NRWVIFSPARAKRPTDFK+K CPFCIG E ECAPE+FRVP D
Sbjct: 24 ELRKDPVTNRWVIFSPARAKRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELFRVP-D 82
Query: 74 PKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSV 133
+WK+RVI+NLYPALSR++ + P+ TG R + GFGFHDVVIESPVHS+
Sbjct: 83 HDPNWKLRVIENLYPALSRNLETQST-QPE-----TG-TSRTIVGFGFHDVVIESPVHSI 135
Query: 134 QLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNXXXXXXXXXXXXXXQLLALPVI 193
QL D++P +G++L+A KKRI QI ++D I Y+QVFKN Q++ALPV+
Sbjct: 136 QLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPVV 195
Query: 194 PPTISARINSTKEYFDQTGKCCLCEVQPKDLQIDVTTHFISIVPFAATFPFEIWIIPRNH 253
PPT+S+R++ TK+YF++TGKCCLCE + K ID ++HF+S+ PFAAT+PFEIWIIP++H
Sbjct: 196 PPTVSSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDH 255
Query: 254 SSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHWFLQI 313
SSHFH LD+ KAVDLGGLLKL L+KI+ QLN+PP+N+MI T+PL+ ++QL Y HWFLQI
Sbjct: 256 SSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQI 315
Query: 314 VPQLAGVGGFEIGTGCYINPVFSEDAAKVMQEVNV 348
VPQL+GVGGFEIGTGCYINPVF ED AKVM+EV++
Sbjct: 316 VPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSL 350
>pdb|2H39|A Chain A, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
pdb|2H39|B Chain B, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
Length = 351
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/335 (61%), Positives = 260/335 (77%), Gaps = 9/335 (2%)
Query: 15 EIRKDPVNNRWVIFSPARAKRPTDFKAKXXXXXXXX-XXCPFCIGNEHECAPEIFRVPPD 73
E+RKDPV NRWVIFSPARAKRPTDFK+K CPFCIG E ECAPE+FRVP D
Sbjct: 24 ELRKDPVTNRWVIFSPARAKRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELFRVP-D 82
Query: 74 PKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSV 133
+WK+RVI+NLYPALSR++ + P+ TG R + GFGFHDVVIESPVHS+
Sbjct: 83 HDPNWKLRVIENLYPALSRNLETQST-QPE-----TG-TSRTIVGFGFHDVVIESPVHSI 135
Query: 134 QLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNXXXXXXXXXXXXXXQLLALPVI 193
QL D++P +G++L+A KKRI QI ++D I Y+QVFKN Q++ALPV+
Sbjct: 136 QLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSGSQMMALPVV 195
Query: 194 PPTISARINSTKEYFDQTGKCCLCEVQPKDLQIDVTTHFISIVPFAATFPFEIWIIPRNH 253
PPT+S+R++ TK+YF++TGKCCLCE + K ID ++HF+S+ PFAAT+PFEIWIIP++H
Sbjct: 196 PPTVSSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDH 255
Query: 254 SSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHWFLQI 313
SSHFH LD+ KAVDLGGLLKL L+KI+ QLN+PP+N+MI T+PL+ ++QL Y HWFLQI
Sbjct: 256 SSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQI 315
Query: 314 VPQLAGVGGFEIGTGCYINPVFSEDAAKVMQEVNV 348
VPQL+GVGGFEIGTGCYINPVF ED AKVM+EV++
Sbjct: 316 VPQLSGVGGFEIGTGCYINPVFPEDVAKVMREVSL 350
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 26/303 (8%)
Query: 17 RKDPVNNRWVIFSPARAKRPTDFKAKXXXXXXXXXXCPFCIGNEHECAPEIFRVPPDPKS 76
R +P+ +W++ SP RAKRP + + P C CA + RV D
Sbjct: 13 RYNPLTGQWILVSPHRAKRPWEGAQETPAKQVLPAHDPDCF----LCAGNV-RVTGDKNP 67
Query: 77 DWK-IRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQL 135
D+ V N + AL D + D MRC + G V+ SP HS L
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESH-DPLMRCQ-------SARGTSRVICFSPDHSKTL 119
Query: 136 QDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNXXXXXXXXXXXXXXQLLALPVIPP 195
+L + E++ +++ ++ + +VQVF+N Q+ A +P
Sbjct: 120 PELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPN 177
Query: 196 TISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWIIP 250
KEYF + L + ++L + T H++++VP+ A +PFE ++P
Sbjct: 178 EAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLP 237
Query: 251 RNHSSHFHELDNEKAVDLG-GLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHW 309
+ H +L + + DL L KLT R ++ + P++ AP + Q HW
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQ----HW 293
Query: 310 FLQ 312
L
Sbjct: 294 QLH 296
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With Udp-
Glucose
Length = 348
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 124/303 (40%), Gaps = 26/303 (8%)
Query: 17 RKDPVNNRWVIFSPARAKRPTDFKAKXXXXXXXXXXCPFCIGNEHECAPEIFRVPPDPKS 76
R +P+ +W++ SP RAKRP + P C CA + RV D
Sbjct: 13 RYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCF----LCAGNV-RVTGDKNP 67
Query: 77 DWK-IRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQL 135
D+ V N + AL D + D MRC + G V+ SP HS L
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESH-DPLMRCQ-------SARGTSRVICFSPDHSKTL 119
Query: 136 QDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNXXXXXXXXXXXXXXQLLALPVIPP 195
+L + E++ +++ ++ + +VQVF+N Q+ A +P
Sbjct: 120 PELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPN 177
Query: 196 TISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWIIP 250
KEYF + L + ++L + T H++++VP+ A +PFE ++P
Sbjct: 178 EAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLP 237
Query: 251 RNHSSHFHELDNEKAVDLG-GLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHW 309
+ H +L + + DL L KLT R ++ + P++ AP + Q HW
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQ----HW 293
Query: 310 FLQ 312
L
Sbjct: 294 QLH 296
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 124/303 (40%), Gaps = 26/303 (8%)
Query: 17 RKDPVNNRWVIFSPARAKRPTDFKAKXXXXXXXXXXCPFCIGNEHECAPEIFRVPPDPKS 76
R +P+ +W++ SP RAKRP + P C CA + RV D
Sbjct: 13 RYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCF----LCAGNV-RVTGDKNP 67
Query: 77 DWK-IRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQL 135
D+ V N + AL D + D MRC + G V+ SP HS L
Sbjct: 68 DYTGTYVFTNDFAALMSDTPDAPESH-DPLMRCQ-------SARGTSRVICFSPDHSKTL 119
Query: 136 QDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNXXXXXXXXXXXXXXQLLALPVIPP 195
+L + E++ +++ ++ + +VQVF+N Q+ A +P
Sbjct: 120 PELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPN 177
Query: 196 TISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWIIP 250
KEYF + L + ++L + T H++++VP+ A +PFE ++P
Sbjct: 178 EAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLP 237
Query: 251 RNHSSHFHELDNEKAVDLG-GLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHW 309
+ H +L + + DL L KLT R ++ + P++ AP + Q HW
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQ----HW 293
Query: 310 FLQ 312
L
Sbjct: 294 QLH 296
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 214 CCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGG 270
C C++ D+ ++ T+ ++ + + +IP+ H+S HEL E A D+G
Sbjct: 13 CIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGV 72
Query: 271 LLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHWFLQIVPQLAGVGGFEIG 326
LL R ++ + +N + L ++ ++H+ I+P+ G +IG
Sbjct: 73 LLAKASRAVAGPDGSMQYNVLQNNGSLA--HQEVPHVHF--HIIPKTDEKTGLKIG 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,775,385
Number of Sequences: 62578
Number of extensions: 384213
Number of successful extensions: 698
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 10
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)