Query 018769
Match_columns 350
No_of_seqs 206 out of 1668
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02643 ADP-glucose phosphory 100.0 6.8E-99 1E-103 724.4 35.3 328 13-349 1-335 (336)
2 TIGR00209 galT_1 galactose-1-p 100.0 6.2E-94 1.3E-98 691.7 33.9 320 7-347 3-339 (347)
3 PRK11720 galactose-1-phosphate 100.0 7.6E-94 1.6E-98 690.8 34.1 320 7-347 3-339 (346)
4 cd00608 GalT Galactose-1-phosp 100.0 4.9E-91 1.1E-95 670.9 32.7 317 15-346 1-329 (329)
5 COG1085 GalT Galactose-1-phosp 100.0 2.1E-80 4.6E-85 583.9 27.0 316 13-347 1-330 (338)
6 KOG2958 Galactose-1-phosphate 100.0 1.4E-79 3E-84 555.3 25.8 323 9-347 7-346 (354)
7 PF01087 GalP_UDP_transf: Gala 100.0 2.3E-47 5.1E-52 338.5 13.2 175 8-194 6-183 (183)
8 PF02744 GalP_UDP_tr_C: Galact 100.0 1.3E-29 2.8E-34 220.9 10.5 142 201-344 1-154 (166)
9 cd01277 HINT_subgroup HINT (hi 99.9 1.6E-25 3.5E-30 180.1 12.7 100 213-316 1-103 (103)
10 cd01275 FHIT FHIT (fragile his 99.9 1.8E-24 3.9E-29 180.7 13.6 108 214-325 1-112 (126)
11 cd01276 PKCI_related Protein K 99.9 6.2E-24 1.3E-28 171.3 11.6 99 213-316 1-104 (104)
12 COG0537 Hit Diadenosine tetrap 99.9 8.1E-23 1.8E-27 173.2 14.7 127 213-345 2-135 (138)
13 cd01278 aprataxin_related apra 99.9 4.1E-22 8.9E-27 160.8 12.2 96 213-314 1-103 (104)
14 PRK10687 purine nucleoside pho 99.9 9.2E-22 2E-26 162.5 11.4 102 213-318 4-109 (119)
15 cd00468 HIT_like HIT family: H 99.8 8.5E-20 1.8E-24 141.6 10.3 86 226-315 1-86 (86)
16 KOG3275 Zinc-binding protein o 99.8 6.3E-19 1.4E-23 140.3 11.3 99 211-317 15-120 (127)
17 PF01230 HIT: HIT domain; Int 99.8 1.4E-18 3E-23 138.7 10.8 90 225-318 8-97 (98)
18 KOG3379 Diadenosine polyphosph 99.6 5.4E-15 1.2E-19 121.0 11.0 95 220-318 14-108 (150)
19 PF11969 DcpS_C: Scavenger mRN 99.4 2.5E-13 5.4E-18 111.8 7.6 95 213-315 1-103 (116)
20 cd00468 HIT_like HIT family: H 99.1 1.8E-10 3.8E-15 89.1 7.5 67 121-188 19-85 (86)
21 KOG4359 Protein kinase C inhib 99.0 1.1E-09 2.4E-14 90.2 8.9 104 209-318 28-138 (166)
22 PF04677 CwfJ_C_1: Protein sim 98.3 1.1E-05 2.5E-10 66.7 11.6 96 210-315 9-107 (121)
23 cd01275 FHIT FHIT (fragile his 98.2 1.2E-05 2.6E-10 66.8 9.8 66 124-189 37-102 (126)
24 COG4360 APA2 ATP adenylyltrans 98.0 1.4E-05 3E-10 72.2 7.3 64 121-196 106-169 (298)
25 cd01276 PKCI_related Protein K 98.0 2.6E-05 5.7E-10 62.4 7.3 100 52-189 1-103 (104)
26 cd01277 HINT_subgroup HINT (hi 97.9 9.3E-05 2E-09 58.9 9.8 66 123-188 36-101 (103)
27 PRK10687 purine nucleoside pho 97.8 0.0001 2.2E-09 60.9 8.2 104 51-192 3-109 (119)
28 PF01230 HIT: HIT domain; Int 97.4 0.00055 1.2E-08 54.2 7.2 67 122-189 28-94 (98)
29 KOG2476 Uncharacterized conser 97.0 0.0058 1.3E-07 60.5 10.2 97 209-315 316-415 (528)
30 COG0537 Hit Diadenosine tetrap 96.9 0.0054 1.2E-07 52.0 8.8 101 52-189 2-103 (138)
31 cd01278 aprataxin_related apra 96.7 0.016 3.4E-07 46.2 9.0 64 124-189 39-104 (104)
32 PF04677 CwfJ_C_1: Protein sim 96.3 0.044 9.5E-07 45.4 9.9 75 121-208 46-120 (121)
33 KOG3969 Uncharacterized conser 95.7 0.11 2.3E-06 48.5 10.1 110 223-344 160-280 (310)
34 KOG0562 Predicted hydrolase (H 95.2 0.035 7.6E-07 47.8 4.9 87 219-314 11-103 (184)
35 KOG3379 Diadenosine polyphosph 92.6 0.61 1.3E-05 39.1 7.3 80 79-188 25-104 (150)
36 KOG2477 Uncharacterized conser 92.5 1.8 3.9E-05 43.8 11.7 97 211-316 406-507 (628)
37 KOG4359 Protein kinase C inhib 91.8 0.56 1.2E-05 39.3 6.2 100 50-189 30-135 (166)
38 PLN03103 GDP-L-galactose-hexos 88.9 1.7 3.7E-05 43.1 7.9 71 229-314 168-240 (403)
39 cd00608 GalT Galactose-1-phosp 88.2 3.1 6.7E-05 40.3 9.2 65 245-314 95-160 (329)
40 PRK11720 galactose-1-phosphate 87.4 0.69 1.5E-05 45.3 4.1 65 123-188 232-300 (346)
41 PF11969 DcpS_C: Scavenger mRN 87.0 0.72 1.6E-05 37.7 3.4 105 53-196 2-110 (116)
42 COG5075 Uncharacterized conser 85.7 1.8 3.9E-05 39.8 5.5 111 223-345 155-276 (305)
43 PLN03103 GDP-L-galactose-hexos 85.0 26 0.00055 35.0 13.6 34 154-191 210-243 (403)
44 TIGR00209 galT_1 galactose-1-p 81.4 2.3 5E-05 41.6 4.8 65 123-188 232-300 (347)
45 PF03470 zf-XS: XS zinc finger 81.0 0.75 1.6E-05 30.8 0.9 8 53-60 1-8 (43)
46 PRK05471 CDP-diacylglycerol py 78.5 5.9 0.00013 36.8 6.2 80 226-313 58-143 (252)
47 TIGR00672 cdh CDP-diacylglycer 78.1 5.5 0.00012 37.0 5.9 80 226-313 57-142 (250)
48 PLN02643 ADP-glucose phosphory 78.0 5.8 0.00013 38.6 6.4 67 121-188 229-300 (336)
49 KOG3275 Zinc-binding protein o 70.3 12 0.00026 30.6 5.3 65 121-189 51-118 (127)
50 COG2134 Cdh CDP-diacylglycerol 69.6 43 0.00093 30.3 9.0 69 225-295 57-131 (252)
51 PF02611 CDH: CDP-diacylglycer 68.5 16 0.00035 33.4 6.5 70 225-296 28-103 (222)
52 COG1085 GalT Galactose-1-phosp 67.1 41 0.00088 32.8 9.2 68 241-313 92-160 (338)
53 PF14354 Lar_restr_allev: Rest 59.4 5.6 0.00012 28.2 1.4 9 51-60 4-12 (61)
54 PRK02079 pyrroloquinoline quin 59.1 9 0.00019 29.8 2.6 31 6-36 4-34 (88)
55 KOG2720 Predicted hydrolase (H 57.7 11 0.00024 36.6 3.4 69 233-314 169-237 (431)
56 PF12239 DUF3605: Protein of u 53.4 35 0.00076 29.5 5.6 21 164-184 133-154 (158)
57 PF01076 Mob_Pre: Plasmid reco 51.0 39 0.00085 30.1 5.7 44 267-318 99-143 (196)
58 PRK01706 S-adenosylmethionine 49.8 58 0.0013 26.9 6.1 89 256-349 13-104 (123)
59 TIGR03330 SAM_DCase_Bsu S-aden 48.8 65 0.0014 26.1 6.2 89 256-349 10-101 (112)
60 COG4360 APA2 ATP adenylyltrans 47.4 31 0.00067 31.9 4.4 66 233-315 95-162 (298)
61 PF14317 YcxB: YcxB-like prote 46.5 38 0.00081 23.2 4.0 39 225-273 24-62 (62)
62 PF01087 GalP_UDP_transf: Gala 43.1 62 0.0013 28.4 5.7 66 244-314 111-177 (183)
63 PRK04025 S-adenosylmethionine 40.0 96 0.0021 26.2 6.1 89 256-349 11-102 (139)
64 KOG0562 Predicted hydrolase (H 39.9 41 0.0009 29.3 3.8 73 140-217 45-127 (184)
65 PF02744 GalP_UDP_tr_C: Galact 37.6 90 0.0019 27.1 5.7 65 122-188 50-120 (166)
66 PF13964 Kelch_6: Kelch motif 37.0 25 0.00055 23.4 1.8 19 15-33 30-48 (50)
67 PRK03124 S-adenosylmethionine 33.4 1.5E+02 0.0032 24.6 6.1 89 256-349 11-102 (127)
68 TIGR03655 anti_R_Lar restricti 32.0 24 0.00052 24.4 1.0 9 51-59 2-10 (53)
69 COG4422 Bacteriophage protein 30.4 53 0.0012 29.2 3.1 72 121-192 104-193 (250)
70 PRK00458 S-adenosylmethionine 30.0 1.9E+02 0.0041 24.0 6.2 90 255-349 21-114 (127)
71 PRK02770 S-adenosylmethionine 28.1 2.8E+02 0.006 23.4 7.0 90 255-349 23-115 (139)
72 KOG1504 Ornithine carbamoyltra 25.1 92 0.002 29.3 3.8 36 128-163 38-73 (346)
73 PF14334 DUF4390: Domain of un 24.9 48 0.001 28.6 1.9 20 13-32 70-89 (165)
74 smart00612 Kelch Kelch domain. 24.9 44 0.00096 21.1 1.3 15 16-30 18-32 (47)
75 PRK13863 type IV secretion sys 24.7 2.9E+02 0.0064 27.7 7.3 13 335-347 163-175 (446)
76 PF02729 OTCace_N: Aspartate/o 24.6 1.2E+02 0.0027 25.5 4.3 28 130-157 1-28 (142)
77 PRK01236 S-adenosylmethionine 24.3 2.6E+02 0.0056 23.4 6.1 90 256-349 12-103 (131)
78 PF01344 Kelch_1: Kelch motif; 23.6 56 0.0012 21.1 1.6 16 15-30 30-45 (47)
79 KOG2477 Uncharacterized conser 22.9 4.8E+02 0.01 27.1 8.5 79 121-210 443-521 (628)
80 PF02675 AdoMet_dc: S-adenosyl 22.7 1.4E+02 0.003 23.7 4.0 88 257-349 6-95 (106)
81 PF10058 DUF2296: Predicted in 22.4 68 0.0015 22.5 1.9 30 150-179 1-35 (54)
82 PRK09710 lar restriction allev 21.8 52 0.0011 24.0 1.2 11 145-155 45-55 (64)
83 TIGR03793 TOMM_pelo TOMM prope 21.4 1.2E+02 0.0025 23.0 3.1 23 244-269 53-75 (77)
84 TIGR03859 PQQ_PqqD coenzyme PQ 21.0 66 0.0014 24.3 1.8 20 13-32 6-25 (81)
No 1
>PLN02643 ADP-glucose phosphorylase
Probab=100.00 E-value=6.8e-99 Score=724.44 Aligned_cols=328 Identities=73% Similarity=1.254 Sum_probs=297.3
Q ss_pred CCeeeccCCCCeEEEEccccCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCceeccC---CCCCCCcEEEEEecCC
Q 018769 13 SPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQNP--NSSSSCPFCIGNEHECAPEIFRVP---PDPKSDWKIRVIQNLY 87 (350)
Q Consensus 13 ~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~~--~~~~~CPFC~g~e~~t~~ei~~~~---~~~~~~w~~~v~~N~f 87 (350)
|+|+|+|||||+|||||++|++|||+|+.+.+... ..+..||||||||+.|++||++++ .++ +|++|||+|||
T Consensus 1 m~e~R~dplt~~wViia~~R~~RP~~~~~~~~~~~~~~~~~~CPfCpgne~~t~~ei~~~~~~~~~~--~w~vrv~~N~f 78 (336)
T PLN02643 1 MAELRKDPVTNRWVIFSPARGKRPTDFKSKSPQNPNGNHSSGCPFCIGHEHECAPEIFRVPDDASAP--DWKVRVIENLY 78 (336)
T ss_pred CCccccCCCCCCEEEEcCCcccCCCCCcccCCcCCCCCCCCCCCCCCCCCCCCCcceeeccCCCCCC--CCeEEEEeCCC
Confidence 89999999999999999999999999854322211 223569999999999999998887 345 89999999999
Q ss_pred CccccCCCCCCCCCCcccccccCC--CceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccE
Q 018769 88 PALSRDIGCKKDGDPDAEMRCTGD--LGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKY 165 (350)
Q Consensus 88 P~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~y 165 (350)
|+|+.+.+.....+ .++ .+++++|+|.||||||||+|+.+|++|+.++|..+|++|++|+++|+++++|+|
T Consensus 79 Pal~~~~~~~~~~~-------~~~~~~~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~y 151 (336)
T PLN02643 79 PALSRDLEPPCTEG-------QGEDYGGRRLPGFGFHDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKY 151 (336)
T ss_pred ccccCCCCCCcccc-------cCcchhhcccceeeEEEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99997755432111 111 245899999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCccccccCCCeEEEecCcEEEEecCCCCCCce
Q 018769 166 VQVFKNHGASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCLCEVQPKDLQIDVTTHFISIVPFAATFPFE 245 (350)
Q Consensus 166 v~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~fc~ii~~E~iV~e~~~~iaf~p~~p~~p~e 245 (350)
|+||||+|+.|||||.||||||||+|++|+.++.+++++++||+++|+|+||+|+++|++|+||++|+||+|++|++|||
T Consensus 152 v~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~iV~en~~f~Af~p~ap~~P~e 231 (336)
T PLN02643 152 VQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKDLLIDESSHFVSIAPFAATFPFE 231 (336)
T ss_pred EEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCccEEEeCCCEEEEeccccCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCCCceeceEEEEEecCCCCCccccc
Q 018769 246 IWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHWFLQIVPQLAGVGGFEI 325 (350)
Q Consensus 246 ~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~~~~~~H~HihiiPR~~~~aG~El 325 (350)
+||+||+|+.+|.+|+++++.+||+++++++++|++.++.++|||++|++|.+++.....++|||+||+||++.++|||+
T Consensus 232 vlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfEl 311 (336)
T PLN02643 232 IWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFEL 311 (336)
T ss_pred EEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcCCccceec
Confidence 99999999999999999999999999999999999999988999999999985432124679999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHHHhccCC
Q 018769 326 GTGCYINPVFSEDAAKVMQEVNVP 349 (350)
Q Consensus 326 ~~g~~in~~~PE~aA~~Lr~~~~~ 349 (350)
++|.|+|+++||++|++||++.++
T Consensus 312 g~g~~in~~~PE~aA~~LR~~~~~ 335 (336)
T PLN02643 312 GTGCYINPVFPEDAAKVLREVNLP 335 (336)
T ss_pred cCCCeeCCCCHHHHHHHHHhCCCC
Confidence 999999999999999999998775
No 2
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=100.00 E-value=6.2e-94 Score=691.71 Aligned_cols=320 Identities=26% Similarity=0.448 Sum_probs=288.5
Q ss_pred CCCCCCCCeeeccCCCCeEEEEccccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCceeccCCCCCCCc-EEEE
Q 018769 7 TQTQSRSPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQN---PNSSSSCPFCIGNEHECAPEIFRVPPDPKSDW-KIRV 82 (350)
Q Consensus 7 ~~~~~~~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~---~~~~~~CPFC~g~e~~t~~ei~~~~~~~~~~w-~~~v 82 (350)
|...+..+|||+|||||+|||||++|++|||+++.++... +...+.||||||||+.|++ + ++ +| .+||
T Consensus 3 ~~~~~~~~~~R~dplt~~wViia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~~~~-~-----~~--~w~~~rV 74 (347)
T TIGR00209 3 QFNPVDHPHRRYNPLTDQWILVSPHRAKRPWQGQQETPAKQVLPAYDPDCYLCPGNKRVTGD-L-----NP--DYTGTYV 74 (347)
T ss_pred cCCCCCCCeeeeCCCCCcEEEEeCCcccCCCCccccccccccCCCCCCCCCCCCCCCCCCCC-c-----CC--CCceEEE
Confidence 3445667999999999999999999999999986442211 1113569999999999865 3 25 89 7999
Q ss_pred EecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 018769 83 IQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDL 162 (350)
Q Consensus 83 ~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~ 162 (350)
|+||||+|+.+.+..... ..++|++++|+|.||||||||+|+.+|++|+.++|..||.+|++|+.+|+ ++
T Consensus 75 ~~N~fPal~~~~~~~~~~--------~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~--~~ 144 (347)
T TIGR00209 75 FTNDFAALMSDTPDAPES--------HDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELG--KT 144 (347)
T ss_pred EeCCCcccccCCCCCCcC--------CCcccccCCCCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHH--hC
Confidence 999999999765543211 12478999999999999999999999999999999999999999999998 68
Q ss_pred ccEEEEecccCccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCccccccCCCe-----EEEecCcEEEEec
Q 018769 163 IKYVQVFKNHGASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVP 237 (350)
Q Consensus 163 ~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~fc~ii~~E~-----iV~e~~~~iaf~p 237 (350)
|+||+||||+|+.|||||.||||||||+|++|+.++.+++++++||+++|+|+||+|+++|+ +|+||++|+||+|
T Consensus 145 i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p 224 (347)
T TIGR00209 145 YPWVQIFENKGAAMGCSNPHPHGQIWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVP 224 (347)
T ss_pred CcEEEEEeecCcccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999875 9999999999999
Q ss_pred CCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEEEEcCCCCccCCCceeceEEEEEecC
Q 018769 238 FAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP-PFNFMIQTAPLQAIDTQLAYIHWFLQIVPQ 316 (350)
Q Consensus 238 ~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~-~yN~~~~~~p~~~~~~~~~~~H~HihiiPR 316 (350)
++|++|||+||+||+|+.+|.+|+++++.+|+.++++++++|++.++.+ +|||++|++|.+++ .++++|||+||+||
T Consensus 225 ~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~--~~~~~H~HihiiPr 302 (347)
T TIGR00209 225 YWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGE--ENQHWQLHAHFYPP 302 (347)
T ss_pred cCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCC--CCcEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999655 99999999999875 36789999999999
Q ss_pred CC-------CCccccccccCCCCCCcHHHHHHHHHhcc
Q 018769 317 LA-------GVGGFEIGTGCYINPVFSEDAAKVMQEVN 347 (350)
Q Consensus 317 ~~-------~~aG~El~~g~~in~~~PE~aA~~Lr~~~ 347 (350)
+. .++|||+ +|.|+|+++||++|+.||++.
T Consensus 303 l~R~~~~~k~~aGfE~-~g~~in~~~PE~aA~~LR~~~ 339 (347)
T TIGR00209 303 LLRSATVRKFMVGYEM-LGETQRDLTAEQAAERLRALS 339 (347)
T ss_pred cccccccccceeehhh-hcCccCCCCHHHHHHHHHhcc
Confidence 75 8899999 999999999999999999864
No 3
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=100.00 E-value=7.6e-94 Score=690.85 Aligned_cols=320 Identities=26% Similarity=0.427 Sum_probs=287.7
Q ss_pred CCCCCCCCeeeccCCCCeEEEEccccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCceeccCCCCCCCcE-EEE
Q 018769 7 TQTQSRSPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQN---PNSSSSCPFCIGNEHECAPEIFRVPPDPKSDWK-IRV 82 (350)
Q Consensus 7 ~~~~~~~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~---~~~~~~CPFC~g~e~~t~~ei~~~~~~~~~~w~-~~v 82 (350)
|...+..+|||+|||||+|||||++|++|||+|+.+++.. +.....||||||||..|++ .++ +|+ +||
T Consensus 3 ~~~~~~~~~~R~dpl~~~wviia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~t~~------~~~--~w~~~rv 74 (346)
T PRK11720 3 QFNPVDHPHRRYNPLTGQWVLVSPHRAKRPWQGQQETPAKETLPAYDPDCFLCPGNTRVTGD------VNP--DYTGTYV 74 (346)
T ss_pred cCCCCCCCeeeeCCCCCcEEEEcCCccCCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCC------CCC--CCCEEEE
Confidence 4556678999999999999999999999999987433211 1113569999999999763 235 896 999
Q ss_pred EecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 018769 83 IQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDL 162 (350)
Q Consensus 83 ~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~ 162 (350)
|+||||+|+.+.+..... ..++|++++|+|+||||||||+|+.+|++|+.++|..+|++|++|+++|+++
T Consensus 75 ~~N~fPal~~~~~~~~~~--------~~~l~~~~~~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~-- 144 (346)
T PRK11720 75 FTNDFAALMPDTPDAPES--------DDPLFRCQSARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT-- 144 (346)
T ss_pred EcCCCchhccCCCCCCcc--------cCcccccCccceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999765543211 1247899999999999999999999999999999999999999999999987
Q ss_pred ccEEEEecccCccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCccccccCCCe-----EEEecCcEEEEec
Q 018769 163 IKYVQVFKNHGASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVP 237 (350)
Q Consensus 163 ~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~fc~ii~~E~-----iV~e~~~~iaf~p 237 (350)
|+||+||||+|+.|||||.||||||||+|++|+.++++++++++||+++|+|+||+|+++|+ +|+||++|+||+|
T Consensus 145 i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p 224 (346)
T PRK11720 145 YPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVP 224 (346)
T ss_pred CcEEEEEeecCcccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999874 9999999999999
Q ss_pred CCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEEEEcCCCCccCCCceeceEEEEEecC
Q 018769 238 FAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP-PFNFMIQTAPLQAIDTQLAYIHWFLQIVPQ 316 (350)
Q Consensus 238 ~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~-~yN~~~~~~p~~~~~~~~~~~H~HihiiPR 316 (350)
++|++|||+||+||+|+.+|.+|+++++.+|+.++++++++|++.++.+ +|||++|++|.+++ ++.++|||+||+||
T Consensus 225 ~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~--~~~~~H~HihiiPr 302 (346)
T PRK11720 225 YWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGE--ENDHWQLHAHFYPP 302 (346)
T ss_pred cccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCC--CCeeEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999755 89999999998765 46899999999999
Q ss_pred CC---C----CccccccccCCCCCCcHHHHHHHHHhcc
Q 018769 317 LA---G----VGGFEIGTGCYINPVFSEDAAKVMQEVN 347 (350)
Q Consensus 317 ~~---~----~aG~El~~g~~in~~~PE~aA~~Lr~~~ 347 (350)
+. . ++|||+ +|.|+|+++||++|+.||++.
T Consensus 303 l~Rs~~~~k~~aGfE~-~g~~in~~~PE~aA~~LR~~~ 339 (346)
T PRK11720 303 LLRSATVRKFMVGYEM-LAETQRDLTAEQAAERLRAVS 339 (346)
T ss_pred ccCccccccceeeeec-ccCccCCCCHHHHHHHHhhcc
Confidence 64 3 899999 899999999999999999863
No 4
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=100.00 E-value=4.9e-91 Score=670.95 Aligned_cols=317 Identities=36% Similarity=0.671 Sum_probs=284.5
Q ss_pred eeeccCCCCeEEEEccccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCceeccCCCCCCCcEEEEEecCCCccccC
Q 018769 15 EIRKDPVNNRWVIFSPARAKRPTDFKAKSPQ-NPNSSSSCPFCIGNEHECAPEIFRVPPDPKSDWKIRVIQNLYPALSRD 93 (350)
Q Consensus 15 e~R~dpltg~~viia~~R~~RP~~~~~~~~~-~~~~~~~CPFC~g~e~~t~~ei~~~~~~~~~~w~~~v~~N~fP~l~~~ 93 (350)
|+|+|||||+|||||++|++|||++..+.+. .+..+..|||||||++.. +++ .++ +|++|||+||||+|+.+
T Consensus 1 e~R~dpl~~~wvi~a~~R~~Rp~~~~~~~~~~~~~~~~~CPfCpg~~~~~-~~~----~~~--~w~~~v~~N~fPal~~~ 73 (329)
T cd00608 1 HRRYNPLTGEWVLVSPHRAKRPWQGQQEAPKKLPEYDPDCPLCPGNERAD-TGE----QNP--DYDVRVFENDFPALKPD 73 (329)
T ss_pred CcccCCCCCcEEEEcCcccCCCCCCcccccccccCCCCCCCcCCCCCCCC-CCC----CCC--CCeEEEECCCCccccCC
Confidence 7999999999999999999999998542211 012236799999999761 121 235 89999999999999976
Q ss_pred CCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccC
Q 018769 94 IGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHG 173 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G 173 (350)
.+..... ..++|++++|+|+|+||||||+|+.+|++|+.+++.++|.+|++|+++|++|++++||+||||+|
T Consensus 74 ~~~~~~~--------~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G 145 (329)
T cd00608 74 APAPEDS--------DDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKG 145 (329)
T ss_pred CCCCccc--------CCcccccCCcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecC
Confidence 5533211 12479999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCccccccCCCe-----EEEecCcEEEEecCCCCCCceEEE
Q 018769 174 ASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWI 248 (350)
Q Consensus 174 ~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~fc~ii~~E~-----iV~e~~~~iaf~p~~p~~p~e~~I 248 (350)
+.|||||.|||+||||++++|+.++++++++++||+++|+|+||+|+++|+ +|+||++|+||+|++|++|||+||
T Consensus 146 ~~aGaSl~HpH~Qi~a~~~vp~~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lI 225 (329)
T cd00608 146 AEMGASLPHPHGQIWALPFLPPEVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHI 225 (329)
T ss_pred cccccCCCCCCeeeeeCCcCChHHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999998764 999999999999999999999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcCCCCccCCCceeceEEEEEecC-----CCCCcc
Q 018769 249 IPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLN-NPPFNFMIQTAPLQAIDTQLAYIHWFLQIVPQ-----LAGVGG 322 (350)
Q Consensus 249 iPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~-~~~yN~~~~~~p~~~~~~~~~~~H~HihiiPR-----~~~~aG 322 (350)
+||+|+.+|.+|+++++.+|++++++++++|++.++ ..+|||++|++|.+++..++.++|||+||+|| ++.++|
T Consensus 226 iPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aG 305 (329)
T cd00608 226 LPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAG 305 (329)
T ss_pred ecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEE
Confidence 999999999999999999999999999999999999 55999999999987643346799999999999 678999
Q ss_pred ccccccCCCCCCcHHHHHHHHHhc
Q 018769 323 FEIGTGCYINPVFSEDAAKVMQEV 346 (350)
Q Consensus 323 ~El~~g~~in~~~PE~aA~~Lr~~ 346 (350)
||+++|.++|+++||++|++||++
T Consensus 306 fE~~~g~~in~~~PE~aA~~LR~~ 329 (329)
T cd00608 306 FELGAGEFINDVTPEQAAARLREV 329 (329)
T ss_pred eeccCCCccCCCCHHHHHHHHhcC
Confidence 999999999999999999999974
No 5
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=100.00 E-value=2.1e-80 Score=583.91 Aligned_cols=316 Identities=34% Similarity=0.629 Sum_probs=286.6
Q ss_pred CCeeeccCCCCeEEEEccccCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCceeccCCCCCCCcEEEEEecCCCccc
Q 018769 13 SPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQN-PNSSSSCPFCIGNEHECAPEIFRVPPDPKSDWKIRVIQNLYPALS 91 (350)
Q Consensus 13 ~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~-~~~~~~CPFC~g~e~~t~~ei~~~~~~~~~~w~~~v~~N~fP~l~ 91 (350)
|+|+|||||||+||||+++|++|||+++.++... ...+..||||+||+..|.. ... .|+++||||+||+|+
T Consensus 1 ~~~~r~nplt~~~vlvs~~RakRP~~~~~~~~~~~~~~~~~CpfC~gn~~~t~~------~~~--~~~~~~~~N~fp~v~ 72 (338)
T COG1085 1 MPERRYNPLTGQWVLVSPHRAKRPWQGAQEKIAEQTDHDPTCPFCPGNERTTEE------NPR--YWHVRVFPNDFPAVS 72 (338)
T ss_pred CCceeecCCCccEEEecCcccCCCccCcccccchhhccCCcCCccCCcceeccc------CCC--CcceeecCCcchhhc
Confidence 7899999999999999999999999997665432 1235789999999987621 112 799999999999999
Q ss_pred cCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecc
Q 018769 92 RDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKN 171 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN 171 (350)
.+.+..+.. .+.+|++..++|.|.||||||+|+.++++|+.+++..++++|++++++|.+..+++||+||+|
T Consensus 73 ~d~p~~~~~--------~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N 144 (338)
T COG1085 73 EDPPDAPGS--------EDPLFKIQEARGKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFEN 144 (338)
T ss_pred CCCCCCCcc--------ccchhcccccCcceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeec
Confidence 887653211 123799999999999999999999999999999999999999999999999899999999999
Q ss_pred cCccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCccccccCCC-----eEEEecCcEEEEecCCCCCCceE
Q 018769 172 HGASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCLCEVQPKD-----LQIDVTTHFISIVPFAATFPFEI 246 (350)
Q Consensus 172 ~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~fc~ii~~E-----~iV~e~~~~iaf~p~~p~~p~e~ 246 (350)
+|+.+|||+.|||+||+|++++|..+++++.++++||++++.|++|++++.| ++|.+|++|+||+||+++||+||
T Consensus 145 ~Gk~~G~S~~HPH~Qi~a~~~~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv 224 (338)
T COG1085 145 KGKAAGASLPHPHGQIVALPVLPLEVARELRSAREYYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEV 224 (338)
T ss_pred cCcccCccCCCCCcceeecccCChHHHHHHHHHHHHHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEE
Confidence 9999999999999999999999999999999999999999999999999855 49999999999999999999999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEEEEcCCCCccCCCceeceEEEEEec---CCC----
Q 018769 247 WIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP-PFNFMIQTAPLQAIDTQLAYIHWFLQIVP---QLA---- 318 (350)
Q Consensus 247 ~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~-~yN~~~~~~p~~~~~~~~~~~H~HihiiP---R~~---- 318 (350)
+|+||+|+..+.+++++++.+||.+++.++.+|++.+++. +|||+||++|... ....+|+|+||+| |..
T Consensus 225 ~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~---~~~~~~~h~~~~p~~~R~~t~~k 301 (338)
T COG1085 225 LIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNE---VNEHYHLHAEIYPPLLRSATKLK 301 (338)
T ss_pred EeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCc---ccccceEEEEEcccccccccccc
Confidence 9999999999999999999999999999999999999988 9999999999873 4578999999999 443
Q ss_pred CCccccccccCCCCCCcHHHHHHHHHhcc
Q 018769 319 GVGGFEIGTGCYINPVFSEDAAKVMQEVN 347 (350)
Q Consensus 319 ~~aG~El~~g~~in~~~PE~aA~~Lr~~~ 347 (350)
+++|+|+++|.++++++||++|++||+..
T Consensus 302 ~~~g~e~~~~e~~~~~~pEeaA~~LR~~~ 330 (338)
T COG1085 302 FLAGYEMGAGEFIRDVTPEEAAERLRERS 330 (338)
T ss_pred eeeeeecccceeeccCCHHHHHHHHHHhh
Confidence 57899999999999999999999999764
No 6
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.4e-79 Score=555.30 Aligned_cols=323 Identities=37% Similarity=0.619 Sum_probs=281.3
Q ss_pred CCCCCCeeeccCCCCeEEEEccccCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCceeccCCCCCCCc-EEEEEe
Q 018769 9 TQSRSPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQNP---NSSSSCPFCIGNEHECAPEIFRVPPDPKSDW-KIRVIQ 84 (350)
Q Consensus 9 ~~~~~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~~---~~~~~CPFC~g~e~~t~~ei~~~~~~~~~~w-~~~v~~ 84 (350)
..++.+|+||||||++|||++|+|+||||+|+.++.... ..+..||||||+++.|+- +. | +| .+.||+
T Consensus 7 ~~~q~~hrRynPltd~wVlvSphRakRPwqg~~e~~~~~~~p~~dp~cplcpG~~ra~g~---~n---p--~ydstyvf~ 78 (354)
T KOG2958|consen 7 DFNQHSHRRYNPLTDEWVLVSPHRAKRPWQGQKEPQNKNTTPSYDPLCPLCPGNIRATGF---RN---P--DYDSTYVFD 78 (354)
T ss_pred ccccCchhccCCccceeEEechhhccCCcccccCccCCCCCCcCCCCCCCCCCcchhccc---cC---C--CCccceecc
Confidence 345678999999999999999999999999965433211 124579999999998873 22 4 44 567999
Q ss_pred cCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCcc
Q 018769 85 NLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIK 164 (350)
Q Consensus 85 N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~ 164 (350)
|+||||+.+.+...... ..++|++..+.|.|.||||+|+|+++|++|+..+|.+|+.+|..++.+|.+.+.++
T Consensus 79 NdypA~~~d~p~~~~~~-------~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~h~~y~ 151 (354)
T KOG2958|consen 79 NDYPALRRDQPTQGQDE-------STGLFKTISVKGVCKVICFSPNHNLTLPLMDVVEIRDVVDAWKKLYNELGQHDSYK 151 (354)
T ss_pred CCchhhccCCCCCCCCC-------CccchhheeecceeEEEEeCCccccccccCCHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 99999998776543221 12379999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCccCCCCCcccccceecCCCCChHHHHHHHHHHHHHhhcCCCcc-----ccccCCCeEEEecCcEEEEecCC
Q 018769 165 YVQVFKNHGASAGASMSHSHSQLLALPVIPPTISARINSTKEYFDQTGKCCL-----CEVQPKDLQIDVTTHFISIVPFA 239 (350)
Q Consensus 165 yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~~~g~c~f-----c~ii~~E~iV~e~~~~iaf~p~~ 239 (350)
||+||+|+|..+|||++|||+|+||++++|..++++++..++||+++|.|++ |+.+.+|+||.||++|++++||+
T Consensus 152 yvQIFeNkGa~mGcSn~HpHgQ~wal~~lP~~vs~e~~s~kkyfe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPyw 231 (354)
T KOG2958|consen 152 YVQIFENKGAAMGCSNPHPHGQAWALPVLPSTVSQELDSQKKYFEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYW 231 (354)
T ss_pred eeeeeccCCcccccCCCCcccceeecccCCcHHHHHhhhHHHHHHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999 66666777999999999999999
Q ss_pred CCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CeEEEEEcCCCCccCCCceeceE-EEEEecCC
Q 018769 240 ATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP-PFNFMIQTAPLQAIDTQLAYIHW-FLQIVPQL 317 (350)
Q Consensus 240 p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~-~yN~~~~~~p~~~~~~~~~~~H~-HihiiPR~ 317 (350)
+.||||||||||+|+++|.+|++.+..|||.+||.++.+|+++|.+. +|||++|++|.++.. +...-|| |+|++|.+
T Consensus 232 A~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~-~e~~n~W~h~hFyppl 310 (354)
T KOG2958|consen 232 ATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTE-QENYNHWLHMHFYPPL 310 (354)
T ss_pred hcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCccccc-ccccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999985 999999999987753 3333454 88888755
Q ss_pred ---CCCccccccccCCCCC---CcHHHHHHHHHhcc
Q 018769 318 ---AGVGGFEIGTGCYINP---VFSEDAAKVMQEVN 347 (350)
Q Consensus 318 ---~~~aG~El~~g~~in~---~~PE~aA~~Lr~~~ 347 (350)
....+|+.|.++++++ ++||++|++||+..
T Consensus 311 lrsatV~kF~vG~e~l~epqrdltpEqaAk~lreld 346 (354)
T KOG2958|consen 311 LRSATVRKFLVGYEMLAEPQRDLTPEQAAKRLRELD 346 (354)
T ss_pred hhhccccceeechhhhcCccccCCHHHHHHHHHhcc
Confidence 4566777777777777 99999999999864
No 7
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=100.00 E-value=2.3e-47 Score=338.52 Aligned_cols=175 Identities=38% Similarity=0.709 Sum_probs=124.0
Q ss_pred CCCCCCCeeeccCCCCeEEEEccccCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCCCCceeccCCCCCCCcEEEEEe
Q 018769 8 QTQSRSPEIRKDPVNNRWVIFSPARAKRPTDFKAKSPQN--PNSS-SSCPFCIGNEHECAPEIFRVPPDPKSDWKIRVIQ 84 (350)
Q Consensus 8 ~~~~~~~e~R~dpltg~~viia~~R~~RP~~~~~~~~~~--~~~~-~~CPFC~g~e~~t~~ei~~~~~~~~~~w~~~v~~ 84 (350)
.+...++|||+|||||+||||+++|++||+++....... +..+ ..||||||++..+.. + . +. .|+++||+
T Consensus 6 ~d~~~~~e~R~dpl~g~~vi~a~~R~~Rp~~~~~~~~~~~~~~~d~~~cpfcpg~e~~~~~--~---~-~~-~~~~rv~~ 78 (183)
T PF01087_consen 6 EDRIYTSELRIDPLTGEWVIIAPERAKRPWAGENERIKDELPSRDEPMCPFCPGNEEVNEI--F---N-PD-YWSVRVFP 78 (183)
T ss_dssp TTS----EEEEETTTTCEEEE-CCGGGSCCCS------S---SS--TT-TTSTT-CGCCCE--C---T-T--SSSEEEEE
T ss_pred hhcccchhhCcHhhcCCccccCHhHhcCchhhhccccCCCCCCCCCCCCCcCCCCcccccc--c---c-cc-ccchhhhh
Confidence 344567999999999999999999999999886544311 1112 579999999987543 1 1 32 39999999
Q ss_pred cCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCcc
Q 018769 85 NLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIK 164 (350)
Q Consensus 85 N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~ 164 (350)
|+||+|+.+.+...... .....+|...++||.||||||||+|+.+|++|+.+++..++.+|++|+.+|+++++++
T Consensus 79 N~fpal~~~~~~~~~~~-----i~~~~~~~~~~~~G~hEViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~ 153 (183)
T PF01087_consen 79 NKFPALSPENNYIRTDA-----IAKNGLFKSESGYGAHEVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIK 153 (183)
T ss_dssp -TT-SSBCCGTTTHB-----------SSS-EEE-BEEEEEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-S
T ss_pred ccchhhCccccCccccc-----ccCCCcccccCCCCCeEEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999998755432100 0013479999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCccCCCCCcccccceecCCCCC
Q 018769 165 YVQVFKNHGASAGASMSHSHSQLLALPVIP 194 (350)
Q Consensus 165 yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p 194 (350)
||++|||+|..+||||.||||||+|++++|
T Consensus 154 yv~~FeN~G~~~GaSl~HpHsQi~a~~~vP 183 (183)
T PF01087_consen 154 YVLIFENEGYEAGASLPHPHSQIIALPHVP 183 (183)
T ss_dssp EEEEEEEESGGGT-SSSSSEEEEEEESS--
T ss_pred eEEEEEecCCcCCCCCCCCceEEecCCccC
Confidence 999999999999999999999999999997
No 8
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.96 E-value=1.3e-29 Score=220.93 Aligned_cols=142 Identities=30% Similarity=0.573 Sum_probs=102.6
Q ss_pred HHHHHHHHhhc-CCCccccccCCCe-----EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 018769 201 INSTKEYFDQT-GKCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKL 274 (350)
Q Consensus 201 ~~~~~~y~~~~-g~c~fc~ii~~E~-----iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~ 274 (350)
++++++||.++ |+|++||+++.|+ +|++|++|++|+|++++||+||||+||+|+.+|.+++++|..+||.+|+.
T Consensus 1 ~~~~~~Y~~~~nGs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~ 80 (166)
T PF02744_consen 1 LENFPHYFEGSNGSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKP 80 (166)
T ss_dssp HHHHHHHHHHH-SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHH
T ss_pred CccchHHHccCCCCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHH
Confidence 46889999998 9999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-CeEEEEEcCCCCccCCCceeceEEEEEecCC-----CCCccccccccCCCCCCcHHHHHHHHH
Q 018769 275 TLRKISVQLNNP-PFNFMIQTAPLQAIDTQLAYIHWFLQIVPQL-----AGVGGFEIGTGCYINPVFSEDAAKVMQ 344 (350)
Q Consensus 275 v~~~l~~~~~~~-~yN~~~~~~p~~~~~~~~~~~H~HihiiPR~-----~~~aG~El~~g~~in~~~PE~aA~~Lr 344 (350)
++++++++|+.+ +|||++|++|.++.. ....||+|+.+-... +.++|+|++.+. +++++||++|+.||
T Consensus 81 i~~r~d~lf~~~~pY~m~ihqaP~~~~~-~~~~fH~H~e~~~ir~~~i~k~~vG~e~l~~~-~~d~~pE~~a~~Lr 154 (166)
T PF02744_consen 81 ILRRYDNLFETSFPYNMGIHQAPVNGED-PEHWFHPHFEPPHIRSENIGKFEVGLEILPGR-LRDETPEQAAALLR 154 (166)
T ss_dssp HHHHHHHHCTS---EEEEEE---SSSS---TT--EEEEE--BESSTTEB----THHHHT-E-EESS-HHHHHHHHH
T ss_pred HHHHhcccCCCCCCCchhhhcCCCCccc-chhhhhcccccccccccccceeeeeHhhhhhh-hcccCHHHHHHHHh
Confidence 999999999865 999999999998753 223377776652111 257799998755 89999999999999
No 9
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.93 E-value=1.6e-25 Score=180.06 Aligned_cols=100 Identities=16% Similarity=0.348 Sum_probs=95.1
Q ss_pred CCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 018769 213 KCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFN 289 (350)
Q Consensus 213 ~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN 289 (350)
.|+||+++++|. +|+|+++|+||+|++|.+|||+||+||+|+.+|.+|+++|+.+|+.+++++.+++++.++..+||
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 499999999885 99999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEcCCCCccCCCceeceEEEEEecC
Q 018769 290 FMIQTAPLQAIDTQLAYIHWFLQIVPQ 316 (350)
Q Consensus 290 ~~~~~~p~~~~~~~~~~~H~HihiiPR 316 (350)
+++|++|..+ ++++|||+||+||
T Consensus 81 ~~~~~~~~~g----~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAG----QVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccC----cccCEEEEEEccC
Confidence 9999998766 4689999999998
No 10
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.92 E-value=1.8e-24 Score=180.71 Aligned_cols=108 Identities=23% Similarity=0.365 Sum_probs=100.7
Q ss_pred CccccccCCCe----EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 018769 214 CCLCEVQPKDL----QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFN 289 (350)
Q Consensus 214 c~fc~ii~~E~----iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN 289 (350)
|+||+++++|. +|+|++.++||+|++|.+|||+||+||+|+.++.+|+++|+.+|+.+++++.+++++.++..+||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99999998764 99999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEcCCCCccCCCceeceEEEEEecCCCCCccccc
Q 018769 290 FMIQTAPLQAIDTQLAYIHWFLQIVPQLAGVGGFEI 325 (350)
Q Consensus 290 ~~~~~~p~~~~~~~~~~~H~HihiiPR~~~~aG~El 325 (350)
+++|++|..+ +.++|||+||+||++..+|+.-
T Consensus 81 ~~~~~g~~~g----q~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 81 IGINDGKAGG----GIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred EEEeCCcccC----CCcCEEEEEEeCCcCCCCCCCC
Confidence 9999999554 5799999999999987777763
No 11
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.91 E-value=6.2e-24 Score=171.34 Aligned_cols=99 Identities=17% Similarity=0.383 Sum_probs=90.7
Q ss_pred CCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcC--CCC
Q 018769 213 KCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLN--NPP 287 (350)
Q Consensus 213 ~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~--~~~ 287 (350)
+|+||+++++|+ +|+|++.++||+|++|.+|||+||+||+|+.++.+|+++++.+|+++++.+ +++.+.++ ..+
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 79 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAEDG 79 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCCC
Confidence 499999999886 999999999999999999999999999999999999999999999999988 66666676 569
Q ss_pred eEEEEEcCCCCccCCCceeceEEEEEecC
Q 018769 288 FNFMIQTAPLQAIDTQLAYIHWFLQIVPQ 316 (350)
Q Consensus 288 yN~~~~~~p~~~~~~~~~~~H~HihiiPR 316 (350)
||+++|++|.+++ +++|||+||+++
T Consensus 80 ~n~~~~~g~~~g~----~v~H~HiHii~~ 104 (104)
T cd01276 80 YRLVINCGKDGGQ----EVFHLHLHLLGG 104 (104)
T ss_pred EEEEEeCCCCCCC----ceeEEEEEEeCC
Confidence 9999999998764 689999999985
No 12
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.90 E-value=8.1e-23 Score=173.17 Aligned_cols=127 Identities=20% Similarity=0.378 Sum_probs=108.7
Q ss_pred CCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeE
Q 018769 213 KCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFN 289 (350)
Q Consensus 213 ~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN 289 (350)
.|+||.++.+|+ +|||+++++||.+..|..|+|++|+||+|+.++.+++++++.+|..+++++.+++++.++.++||
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 699999999987 99999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEcCCCCccCCCceeceEEEEEecCCCC---CccccccccCCCCC-CcHHHHHHHHHh
Q 018769 290 FMIQTAPLQAIDTQLAYIHWFLQIVPQLAG---VGGFEIGTGCYINP-VFSEDAAKVMQE 345 (350)
Q Consensus 290 ~~~~~~p~~~~~~~~~~~H~HihiiPR~~~---~aG~El~~g~~in~-~~PE~aA~~Lr~ 345 (350)
+++|.+..+| |.++|+|+||+||++. ..|.-++. ...+ ...++++++|++
T Consensus 82 i~~N~g~~ag----q~V~HlH~HvIPr~~~d~~~~~~~~~~--~~~~~~~l~~~~~~i~~ 135 (138)
T COG0537 82 IGINNGKAAG----QEVFHLHIHIIPRYKGDDNFPGPGWGT--KVEPNEELEELAEKIRK 135 (138)
T ss_pred EEEecCcccC----cCcceEEEEEcCCcCCCCCcccccccc--cCCcHHHHHHHHHHHHH
Confidence 9999987766 4799999999999973 22333332 1222 456677777763
No 13
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.88 E-value=4.1e-22 Score=160.81 Aligned_cols=96 Identities=16% Similarity=0.319 Sum_probs=87.5
Q ss_pred CCccccccCCCe-----EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHH--cCC
Q 018769 213 KCCLCEVQPKDL-----QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQ--LNN 285 (350)
Q Consensus 213 ~c~fc~ii~~E~-----iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~--~~~ 285 (350)
.|+||+++++|+ +|++++.++||+|++|++|||+||+||+|+.++.+++++++.+|+.+++.+.+++.+. ++.
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 499999999764 9999999999999999999999999999999999999999999999999998877765 456
Q ss_pred CCeEEEEEcCCCCccCCCceeceEEEEEe
Q 018769 286 PPFNFMIQTAPLQAIDTQLAYIHWFLQIV 314 (350)
Q Consensus 286 ~~yN~~~~~~p~~~~~~~~~~~H~Hihii 314 (350)
.+||+++|++|. ++++|+|+||+
T Consensus 81 ~~~n~g~h~~p~------~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPF------TSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCC------cCeeeEEEEee
Confidence 699999999986 25899999997
No 14
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.87 E-value=9.2e-22 Score=162.54 Aligned_cols=102 Identities=10% Similarity=0.210 Sum_probs=91.3
Q ss_pred CCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHH-HHcCCCCe
Q 018769 213 KCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKIS-VQLNNPPF 288 (350)
Q Consensus 213 ~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~-~~~~~~~y 288 (350)
.|+||+|++++. +||||+.++||.+..|..|+|++|+||+|+.++.+|+++++.+++.+++.+.+.+. ..++..+|
T Consensus 4 ~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~ 83 (119)
T PRK10687 4 ETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGY 83 (119)
T ss_pred CCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 699999999987 99999999999999999999999999999999999999999999988887766554 33566799
Q ss_pred EEEEEcCCCCccCCCceeceEEEEEecCCC
Q 018769 289 NFMIQTAPLQAIDTQLAYIHWFLQIVPQLA 318 (350)
Q Consensus 289 N~~~~~~p~~~~~~~~~~~H~HihiiPR~~ 318 (350)
|+++|+++.++ |+++|+|+||+||..
T Consensus 84 ~l~~n~G~~ag----Q~V~HlHiHvI~g~~ 109 (119)
T PRK10687 84 RLIMNTNRHGG----QEVYHIHMHLLGGRP 109 (119)
T ss_pred EEEEeCCCcCC----cccCEEEEEECCCcc
Confidence 99999998876 469999999999875
No 15
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.82 E-value=8.5e-20 Score=141.65 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=81.8
Q ss_pred EEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCCCce
Q 018769 226 IDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLA 305 (350)
Q Consensus 226 V~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~~~~ 305 (350)
||||+.++||+|++|.+|||+||+||+|+.++.+++++++.+|+.+++++++++++.++..+||+++|.++..|+ +
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~----~ 76 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ----S 76 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC----c
Confidence 689999999999999999999999999999999999999999999999999999988888899999999987764 6
Q ss_pred eceEEEEEec
Q 018769 306 YIHWFLQIVP 315 (350)
Q Consensus 306 ~~H~HihiiP 315 (350)
++|||+||+|
T Consensus 77 v~H~H~hiiP 86 (86)
T cd00468 77 VPHVHLHVLP 86 (86)
T ss_pred CCEEEEEeCC
Confidence 8999999998
No 16
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.80 E-value=6.3e-19 Score=140.25 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=86.6
Q ss_pred cCCCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCCC---CCCccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 018769 211 TGKCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRNH---SSHFHELDNEKAVDLGGLLKLTLRKISVQLN 284 (350)
Q Consensus 211 ~g~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkrH---~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~ 284 (350)
-+.|+||+|+++|+ +|+|++.++||.+.+|..|+|.+||||+| .+...+.+++.+.+|..+.+++++.+ |
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~----G 90 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKAL----G 90 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHh----C
Confidence 47899999999998 99999999999999999999999999999 55566778888888888888887764 5
Q ss_pred CC-CeEEEEEcCCCCccCCCceeceEEEEEecCC
Q 018769 285 NP-PFNFMIQTAPLQAIDTQLAYIHWFLQIVPQL 317 (350)
Q Consensus 285 ~~-~yN~~~~~~p~~~~~~~~~~~H~HihiiPR~ 317 (350)
.. +||+++|+++.+. |++||+|+|++|.+
T Consensus 91 l~~gYrvv~NnG~~g~----QsV~HvH~HvlgGr 120 (127)
T KOG3275|consen 91 LEDGYRVVQNNGKDGH----QSVYHVHLHVLGGR 120 (127)
T ss_pred cccceeEEEcCCcccc----eEEEEEEEEEeCCc
Confidence 44 8999999998765 57999999999954
No 17
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.78 E-value=1.4e-18 Score=138.67 Aligned_cols=90 Identities=17% Similarity=0.379 Sum_probs=83.9
Q ss_pred EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCCCc
Q 018769 225 QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQL 304 (350)
Q Consensus 225 iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~~~ 304 (350)
+|||++.+++|.+..|..|||++|+||+|+.++.+|+++++.+|..+++++.+.+++.++..+||+..++++..| +
T Consensus 8 vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~g----q 83 (98)
T PF01230_consen 8 VVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAG----Q 83 (98)
T ss_dssp EEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGT----S
T ss_pred EEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhc----C
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988766 4
Q ss_pred eeceEEEEEecCCC
Q 018769 305 AYIHWFLQIVPQLA 318 (350)
Q Consensus 305 ~~~H~HihiiPR~~ 318 (350)
.++|+|+||+||++
T Consensus 84 ~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 84 SVPHLHFHVIPRYK 97 (98)
T ss_dssp SSSS-EEEEEEEST
T ss_pred ccCEEEEEEecccC
Confidence 69999999999975
No 18
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.61 E-value=5.4e-15 Score=121.04 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=88.5
Q ss_pred cCCCeEEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCc
Q 018769 220 QPKDLQIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQA 299 (350)
Q Consensus 220 i~~E~iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~ 299 (350)
+..+.+.|++.+..||+...|..|+|++|.|+|-+..|.||+.+|..||...+++|.+.+++.+...+.|+.+..||.+|
T Consensus 14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 33355999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCceeceEEEEEecCCC
Q 018769 300 IDTQLAYIHWFLQIVPQLA 318 (350)
Q Consensus 300 ~~~~~~~~H~HihiiPR~~ 318 (350)
|.++|+|+||+||..
T Consensus 94 ----QTVpHvHvHIlPR~~ 108 (150)
T KOG3379|consen 94 ----QTVPHVHVHILPRKA 108 (150)
T ss_pred ----cccceeEEEEccccc
Confidence 479999999999985
No 19
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.44 E-value=2.5e-13 Score=111.81 Aligned_cols=95 Identities=14% Similarity=0.317 Sum_probs=75.6
Q ss_pred CCccccccCCCe---EEEecCcEEEEecCCCCCCceEEEEeCC-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHcC----
Q 018769 213 KCCLCEVQPKDL---QIDVTTHFISIVPFAATFPFEIWIIPRN-HSSHFHELDNEKAVDLGGLLKLTLRKISVQLN---- 284 (350)
Q Consensus 213 ~c~fc~ii~~E~---iV~e~~~~iaf~p~~p~~p~e~~IiPkr-H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~---- 284 (350)
.|+||.|..++. +||+|+.+++|.+.+|..+.|.+|+||+ |+.++.+|+.+.+.-|.++...+.+.+.+...
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 399999999875 9999999999999999999999999999 99999999998888888877777666665552
Q ss_pred CCCeEEEEEcCCCCccCCCceeceEEEEEec
Q 018769 285 NPPFNFMIQTAPLQAIDTQLAYIHWFLQIVP 315 (350)
Q Consensus 285 ~~~yN~~~~~~p~~~~~~~~~~~H~HihiiP 315 (350)
...++++||..| +++|+|+|++.
T Consensus 81 ~~~~~~gfH~~P--------S~~HLHlHvi~ 103 (116)
T PF11969_consen 81 SDDIRLGFHYPP--------SVYHLHLHVIS 103 (116)
T ss_dssp GGGEEEEEESS---------SSSS-EEEEEE
T ss_pred hhhhcccccCCC--------CcceEEEEEcc
Confidence 348999999987 36899999986
No 20
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.13 E-value=1.8e-10 Score=89.06 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=62.3
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCccccccee
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLL 188 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~ 188 (350)
.|.+||- .+|..++.+++.+++.+++.++++.++.|++..+...+.++.|.|+.+|.|+.|+|.||+
T Consensus 19 gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~hii 85 (86)
T cd00468 19 GHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVL 85 (86)
T ss_pred CcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEEeC
Confidence 4777776 899999999999999999999999999998777888999999999999999999999996
No 21
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=90.16 Aligned_cols=104 Identities=9% Similarity=0.265 Sum_probs=80.2
Q ss_pred hhcCCCccccccCC-----CeEEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 018769 209 DQTGKCCLCEVQPK-----DLQIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQL 283 (350)
Q Consensus 209 ~~~g~c~fc~ii~~-----E~iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~ 283 (350)
+....|.||||+.+ |+...||+..++|-+++|....|-+++||+|+.+..+|+.++..-+-.++++-..-+.+..
T Consensus 28 ~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~ 107 (166)
T KOG4359|consen 28 EPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNN 107 (166)
T ss_pred CCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhc
Confidence 34668999999984 3478899999999999999999999999999999999988876665555554433333333
Q ss_pred CC--CCeEEEEEcCCCCccCCCceeceEEEEEecCCC
Q 018769 284 NN--PPFNFMIQTAPLQAIDTQLAYIHWFLQIVPQLA 318 (350)
Q Consensus 284 ~~--~~yN~~~~~~p~~~~~~~~~~~H~HihiiPR~~ 318 (350)
.. .-..++||.+|+-. +-|+|+|+|-+.+
T Consensus 108 ~td~~~~r~GFHLPPf~S------V~HLHlH~I~P~~ 138 (166)
T KOG4359|consen 108 FTDFTNVRMGFHLPPFCS------VSHLHLHVIAPVD 138 (166)
T ss_pred cCCchheeEeccCCCcce------eeeeeEeeecchH
Confidence 22 26679999999864 7799999774444
No 22
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.30 E-value=1.1e-05 Score=66.72 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=69.7
Q ss_pred hcCCCccccc---cCCCeEEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018769 210 QTGKCCLCEV---QPKDLQIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP 286 (350)
Q Consensus 210 ~~g~c~fc~i---i~~E~iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~ 286 (350)
....|.||-- ++..+||.-++.+...+|-.|..++|.+|+|..|.+++.+++++.+.++-..-+.+.+.+.+ .|..
T Consensus 9 ~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~ 87 (121)
T PF04677_consen 9 APDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKD 87 (121)
T ss_pred CCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 3568999942 23344888888776667779999999999999999999999999999998866655555543 3332
Q ss_pred CeEEEEEcCCCCccCCCceeceEEEEEec
Q 018769 287 PFNFMIQTAPLQAIDTQLAYIHWFLQIVP 315 (350)
Q Consensus 287 ~yN~~~~~~p~~~~~~~~~~~H~HihiiP 315 (350)
. ++|-... . ...|.|++++|
T Consensus 88 -v-vf~E~~~-~------~~~H~~iq~vP 107 (121)
T PF04677_consen 88 -V-VFFERVR-K------RNPHTHIQCVP 107 (121)
T ss_pred -E-EEEEEeC-C------CCcEEEEEEEE
Confidence 1 3332222 1 24699999998
No 23
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=98.20 E-value=1.2e-05 Score=66.83 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred EEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceec
Q 018769 124 VVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 124 VIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
|+|...+|..++.+|+.+++.++..+.+.-.+.|++.-+..-+.+..|.|+.+|.++.|.|.+|+.
T Consensus 37 ~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiP 102 (126)
T cd01275 37 VLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVP 102 (126)
T ss_pred EEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEEEEEeC
Confidence 677777999999999999999999988765555543322333456679999999999999999974
No 24
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.4e-05 Score=72.21 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=44.2
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceecCCCCChH
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLALPVIPPT 196 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~ 196 (350)
.|..||-+ +-...=+.+++.++... | +-|..-.+ ++|-|.|+.||||+.|-|.||+-+|+++..
T Consensus 106 eHlLiVTr-efedQ~s~LTl~Df~ta---~----~vL~~ldg----lvFYNsGp~aGaSq~HkHLQi~pmPfv~~~ 169 (298)
T COG4360 106 EHLLIVTR-EFEDQESALTLADFTTA---Y----AVLCGLDG----LVFYNSGPIAGASQDHKHLQIVPMPFVAFQ 169 (298)
T ss_pred ceeEEeeh-hhhhccccCCHHHHHHH---H----HHHhcccc----eEEecCCCCcCcCCCccceeEeeccccccc
Confidence 47666654 44434456776665443 3 22222223 889999999999999999999999999763
No 25
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=97.97 E-value=2.6e-05 Score=62.38 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCCcEEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCC
Q 018769 52 SCPFCIGNEHECAPEIFRVPPDPKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVH 131 (350)
Q Consensus 52 ~CPFC~g~e~~t~~ei~~~~~~~~~~w~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H 131 (350)
.|+||.-...+.+..+.. ++. .+.+|.++||... .+++|-..+|
T Consensus 1 ~C~fc~i~~~e~~~~iv~--e~~----~~~a~~~~~p~~~------------------------------gh~lIiPk~H 44 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVY--EDD----EVLAFHDINPQAP------------------------------VHILVIPKKH 44 (104)
T ss_pred CCcceecccCCCccCEEE--ECC----CEEEEECCCCCCC------------------------------CEEEEEecce
Confidence 499997554433332321 112 4677888888632 2356667789
Q ss_pred CCCcCCCCHHHHH---HHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceec
Q 018769 132 SVQLQDLEPREVG---EVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 132 ~~~l~~~~~~~~~---~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
..++.+++.++.. .++...+.-.+.+.. ...-+.+..|.|+.+|.|+.|-|..|++
T Consensus 45 ~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 45 IASLSDATEEDEELLGHLLSAAAKVAKDLGI--AEDGYRLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred eCChHHcccccHHHHHHHHHHHHHHHHHhCC--CCCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence 9999887665544 444444222222321 1233467789999999999999999986
No 26
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=97.93 E-value=9.3e-05 Score=58.89 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=52.3
Q ss_pred EEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCccccccee
Q 018769 123 DVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLL 188 (350)
Q Consensus 123 eVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~ 188 (350)
+++|...+|..++.+|+.+++.++..+.++-.+.|.+.=+..-+.+..|.|+.+|.+..|-|..|+
T Consensus 36 ~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiHii 101 (103)
T cd01277 36 HTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVI 101 (103)
T ss_pred eEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEEEc
Confidence 466777899999999999999999988888777765432333345556779999999999999886
No 27
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=97.81 E-value=0.0001 Score=60.91 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCCCCCCCCCCCCCCc-eeccCCCCCCCcEEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCC
Q 018769 51 SSCPFCIGNEHECAPE-IFRVPPDPKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESP 129 (350)
Q Consensus 51 ~~CPFC~g~e~~t~~e-i~~~~~~~~~~w~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp 129 (350)
..|.||.=-..+-+.. +++ + . .+.+|.++||+.. .|-+| -..
T Consensus 3 ~~CiFC~I~~g~~p~~~v~e--d-d----~~~aflD~~P~~~-----------------------------GH~LV-iPK 45 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQ--D-E----LVTAFRDISPQAP-----------------------------THILI-IPN 45 (119)
T ss_pred CCCchhhhhcCCCCCCEEEE--C-C----CEEEEEcCCCCCC-----------------------------ccEEE-Eeh
Confidence 3699997332222333 332 2 2 6889999999732 25444 466
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC--CccEEEEecccCccCCCCCcccccceecCCC
Q 018769 130 VHSVQLQDLEPREVGEVLLACKKRIEQIKEYD--LIKYVQVFKNHGASAGASMSHSHSQLLALPV 192 (350)
Q Consensus 130 ~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~--~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~ 192 (350)
+|..++.+++.++...+..+... ...+.... ...=+.+..|.|+.+|.|+.|-|.-|++-.-
T Consensus 46 ~H~~~l~dl~~~~~~~l~~l~~~-~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 46 ILIPTVNDVSAEHEQALGRMITV-AAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred hHhCChhHCChHHHHHHHHHHHH-HHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 99999999999986665554422 22221111 2234667779999999999999998887544
No 28
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=97.43 E-value=0.00055 Score=54.17 Aligned_cols=67 Identities=31% Similarity=0.382 Sum_probs=54.9
Q ss_pred eEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceec
Q 018769 122 HDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 122 heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
|-+|| ..+|..++.+++.++...++.+.+.-.+.|++.-...-+.+.+|.|..+|.+++|-|..|+.
T Consensus 28 h~LVi-pk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~HviP 94 (98)
T PF01230_consen 28 HLLVI-PKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFHVIP 94 (98)
T ss_dssp EEEEE-ESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEEEEE
T ss_pred EEEEE-ecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEEEec
Confidence 54444 55799999999999999999999888888876445556778889999999999999999975
No 29
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0058 Score=60.49 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=68.8
Q ss_pred hhcCCCcccccc-C--CCeEEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 018769 209 DQTGKCCLCEVQ-P--KDLQIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNN 285 (350)
Q Consensus 209 ~~~g~c~fc~ii-~--~E~iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~ 285 (350)
..-|.|-||=-- + ..+||.-.+++..-+|-.|...+|++|+|..|++++..|+.+.+.+|-+.=..+.+. .+..|.
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~ 394 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGK 394 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 357899999432 2 334888899999999999999999999999999999999988888776654433333 344554
Q ss_pred CCeEEEEEcCCCCccCCCceeceEEEEEec
Q 018769 286 PPFNFMIQTAPLQAIDTQLAYIHWFLQIVP 315 (350)
Q Consensus 286 ~~yN~~~~~~p~~~~~~~~~~~H~HihiiP 315 (350)
. .+++... ....-|+|+.++|
T Consensus 395 ~---~vvfE~~------~~rs~Hlq~Qvip 415 (528)
T KOG2476|consen 395 D---AVVFERQ------SYRSVHLQLQVIP 415 (528)
T ss_pred e---EEEEEee------cccceeeEEEEEe
Confidence 4 2222210 0123589999887
No 30
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=96.95 E-value=0.0054 Score=51.96 Aligned_cols=101 Identities=27% Similarity=0.435 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCc-eeccCCCCCCCcEEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCC
Q 018769 52 SCPFCIGNEHECAPE-IFRVPPDPKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPV 130 (350)
Q Consensus 52 ~CPFC~g~e~~t~~e-i~~~~~~~~~~w~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~ 130 (350)
.|.||.=-..+-+.. +++ + . .+.+|-|.||.-. .|-+||=- .
T Consensus 2 ~ciFc~ii~~e~~~~~Vye--~-~----~~~afld~~P~~~-----------------------------gH~LviPk-~ 44 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYE--D-E----HVLAFLDIYPAAP-----------------------------GHTLVIPK-R 44 (138)
T ss_pred CceeeeeecCCCCceEEEe--C-C----CEEEEecCCCCCC-----------------------------CeEEEEec-c
Confidence 599996333322333 232 2 2 5788889888731 25555443 8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceec
Q 018769 131 HSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 131 H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
|..++.+++.+++..++...+.-.+.++..-...=+-+--|.|..||.+..|-|.-|+.
T Consensus 45 h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIP 103 (138)
T COG0537 45 HVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIP 103 (138)
T ss_pred chhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcC
Confidence 99999999999999999999888777764422223344559999999999999998875
No 31
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=96.65 E-value=0.016 Score=46.23 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC--CccEEEEecccCccCCCCCcccccceec
Q 018769 124 VVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYD--LIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 124 VIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~--~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
++|-..+|..++.+++.+++..+..+.+.-.+.+++.. .-.-..+..|.|+. .|+.|.|.-|++
T Consensus 39 ~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 39 YLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred EEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 44455689999999999987666665554333243211 11122334444544 599999988763
No 32
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=96.33 E-value=0.044 Score=45.37 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=50.8
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceecCCCCChHHHHH
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLALPVIPPTISAR 200 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~ 200 (350)
.|-+||=- .|..++.+++.+.+.++-. +++.+..+.+..+ +-|.+|++. ..+..|-|.|.+..| . ..
T Consensus 46 gH~lIvPi-~H~~s~~~~de~~~~Ei~~-f~~~L~~mf~~~~-~~vvf~E~~----~~~~~H~~iq~vPvp---~---~~ 112 (121)
T PF04677_consen 46 GHCLIVPI-QHVPSLTELDEEVWEEIRN-FQKSLRKMFASQG-KDVVFFERV----RKRNPHTHIQCVPVP---K---EL 112 (121)
T ss_pred CEEEEEec-ceecccccCCHHHHHHHHH-HHHHHHHHHHHcC-CCEEEEEEe----CCCCcEEEEEEEEcC---H---HH
Confidence 47666655 8999999999887777665 6677777643322 367889988 556778888887544 2 23
Q ss_pred HHHHHHHH
Q 018769 201 INSTKEYF 208 (350)
Q Consensus 201 ~~~~~~y~ 208 (350)
.+.+..||
T Consensus 113 ~~~~~~yF 120 (121)
T PF04677_consen 113 GEKAPSYF 120 (121)
T ss_pred HHhhhhhc
Confidence 45556665
No 33
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.11 Score=48.47 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=72.2
Q ss_pred CeEEEecC----cEEEEecC--CCCC--CceEE-EEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC--CeEEE
Q 018769 223 DLQIDVTT----HFISIVPF--AATF--PFEIW-IIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP--PFNFM 291 (350)
Q Consensus 223 E~iV~e~~----~~iaf~p~--~p~~--p~e~~-IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~--~yN~~ 291 (350)
|.||+++. +|+.+-++ .+.. .-+++ |+=++.++++-||+.+.+.-|-.+-+++...+...+|.. -..|.
T Consensus 160 driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf 239 (310)
T KOG3969|consen 160 DRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMF 239 (310)
T ss_pred cceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEE
Confidence 33888764 36666554 2332 23333 666777999999999999999999999998888778754 55677
Q ss_pred EEcCCCCccCCCceeceEEEEEecCCCCCccccccccCCCCCCcHHHHHHHHH
Q 018769 292 IQTAPLQAIDTQLAYIHWFLQIVPQLAGVGGFEIGTGCYINPVFSEDAAKVMQ 344 (350)
Q Consensus 292 ~~~~p~~~~~~~~~~~H~HihiiPR~~~~aG~El~~g~~in~~~PE~aA~~Lr 344 (350)
||-.| ++||+|+||++- +...|-..+. ...+..++.-+.|+
T Consensus 240 ~HYqP--------SyYHlHVHi~ni-k~~~~~~~~~---~rAilLddVI~nL~ 280 (310)
T KOG3969|consen 240 FHYQP--------SYYHLHVHIVNI-KHDHAPGSGC---GRAILLDDVIENLE 280 (310)
T ss_pred EEecC--------ceEEEEEEEEec-cCCCCCCccc---cceeeHHHHHHHhc
Confidence 77554 589999999983 2212223332 22345566655554
No 34
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=95.18 E-value=0.035 Score=47.78 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=52.6
Q ss_pred ccCCCeEEEec-CcEEEEecCCCCCCceEEEEeC-CCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCeEEEE
Q 018769 219 VQPKDLQIDVT-THFISIVPFAATFPFEIWIIPR-NHSSHFHELDNEKAVDLGGLLKLTLRKISVQLN----NPPFNFMI 292 (350)
Q Consensus 219 ii~~E~iV~e~-~~~iaf~p~~p~~p~e~~IiPk-rH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~----~~~yN~~~ 292 (350)
+-+.|.++.+. |.++++.+-+|....|.+|+|+ .-+.++.....+.+.-| .-+..+...+...++ ..-|++|+
T Consensus 11 i~k~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll-~~~h~~~~~~v~~~~~~~~~~~f~vG~ 89 (184)
T KOG0562|consen 11 IPKPENVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLL-KEDHAVGPCWVDQLTNEALCNYFRVGF 89 (184)
T ss_pred CCccceeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHh-HHHhhcCchHHHHhcchhhhhheeeee
Confidence 33344333344 7899999999999999999995 33444444433333222 122222222223332 23689999
Q ss_pred EcCCCCccCCCceeceEEEEEe
Q 018769 293 QTAPLQAIDTQLAYIHWFLQIV 314 (350)
Q Consensus 293 ~~~p~~~~~~~~~~~H~Hihii 314 (350)
|..|.- -++|+|||
T Consensus 90 HavPSM--------~~LHLHVI 103 (184)
T KOG0562|consen 90 HAVPSM--------NNLHLHVI 103 (184)
T ss_pred ccCcch--------hheeEEEe
Confidence 998843 37899988
No 35
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=92.56 E-value=0.61 Score=39.05 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=62.0
Q ss_pred EEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 018769 79 KIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIK 158 (350)
Q Consensus 79 ~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~ 158 (350)
....|-|+=|.+.. | |+|-.-+--..|.+|+.++..++|...+.-.+-|+
T Consensus 25 ~sfafvNlkPvvpg-----------------------------H-VLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~le 74 (150)
T KOG3379|consen 25 HSFAFVNLKPVVPG-----------------------------H-VLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLE 74 (150)
T ss_pred ceEEEEeccccccc-----------------------------e-EEEeccccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 56888898888642 3 33333344457889999999999999988777776
Q ss_pred cCCCccEEEEecccCccCCCCCccccccee
Q 018769 159 EYDLIKYVQVFKNHGASAGASMSHSHSQLL 188 (350)
Q Consensus 159 ~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~ 188 (350)
+--......|----|+.||-|.+|-|--|+
T Consensus 75 k~~~~ts~ti~iQDG~~AGQTVpHvHvHIl 104 (150)
T KOG3379|consen 75 KHYNATSLTIAIQDGPEAGQTVPHVHVHIL 104 (150)
T ss_pred HHhcccceEEEeccccccCcccceeEEEEc
Confidence 555566777888899999999999998875
No 36
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=1.8 Score=43.80 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=64.4
Q ss_pred cCCCcccc-cc--CCCeEEEecCc-EEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018769 211 TGKCCLCE-VQ--PKDLQIDVTTH-FISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP 286 (350)
Q Consensus 211 ~g~c~fc~-ii--~~E~iV~e~~~-~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~ 286 (350)
..+|++|= .. ...++|.-... .+++.-+.+...||.+|+|-.|..+-..|++++|+++-...+-++..+... +.+
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~-n~d 484 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASM-NLD 484 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 45799992 22 22235554444 444444667888999999999999999999999999877766555555432 222
Q ss_pred CeEEEEE-cCCCCccCCCceeceEEEEEecC
Q 018769 287 PFNFMIQ-TAPLQAIDTQLAYIHWFLQIVPQ 316 (350)
Q Consensus 287 ~yN~~~~-~~p~~~~~~~~~~~H~HihiiPR 316 (350)
.+|+ +++-- +...|+-||.||-
T Consensus 485 ---viFyE~a~~l-----~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 485 ---VIFYENAPSL-----QRRPHTAIECIPV 507 (628)
T ss_pred ---eEEEeccCcc-----ccCCceeEEEeec
Confidence 3333 33321 2368999999983
No 37
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=91.84 E-value=0.56 Score=39.34 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCC-CCCCceeccCCCCCCCcEEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeC
Q 018769 50 SSSCPFCIGNEH-ECAPEIFRVPPDPKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIES 128 (350)
Q Consensus 50 ~~~CPFC~g~e~-~t~~ei~~~~~~~~~~w~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIies 128 (350)
++.|-||.=..+ ..++++... ++. +..+|..+||+-+ .|..+| +
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~-En~----~~V~fkDikPaA~-----------------------------~HYLvi-p 74 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHC-ENE----DLVCFKDIKPAAT-----------------------------HHYLVV-P 74 (166)
T ss_pred CCceEEEEeecccCCCCceeEe-cCC----cEEEEecCCcccc-----------------------------ceEEEe-c
Confidence 457999976554 345566654 223 6788999999732 365554 6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecc-----cCccCCCCCcccccceec
Q 018769 129 PVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKN-----HGASAGASMSHSHSQLLA 189 (350)
Q Consensus 129 p~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN-----~G~~aGaSl~HpH~Qi~a 189 (350)
.+|-.++.++..+++..+=.....-...|..+-. ..|+| +.+ -=.|..|-|..+++
T Consensus 75 K~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~----td~~~~r~GFHLP-Pf~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 75 KKHIGNCRTLRKDQVELVENMVTVGKTILERNNF----TDFTNVRMGFHLP-PFCSVSHLHLHVIA 135 (166)
T ss_pred hHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc----CCchheeEeccCC-CcceeeeeeEeeec
Confidence 6999999999999988776555554444432221 11222 222 23688999999886
No 38
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=88.92 E-value=1.7 Score=43.13 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=43.2
Q ss_pred cCcEEEEecCCCCCCceEEEEeCC--CCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCCCcee
Q 018769 229 TTHFISIVPFAATFPFEIWIIPRN--HSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAY 306 (350)
Q Consensus 229 ~~~~iaf~p~~p~~p~e~~IiPkr--H~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~~~~~ 306 (350)
+...+++..-.|..++|++++|.. |.+-. ++. +++..++... ...+.+.|.+++|+ .-+ ...+
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~--i~~-------~~l~la~~~a-~~~~~p~frvgYNS-lGA----~ASv 232 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQR--IDP-------DSFLLALYMA-AEANNPYFRVGYNS-LGA----FATI 232 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeE--ecH-------HHHHHHHHHH-HhcCCCcEEEEecC-Ccc----ccCc
Confidence 444577888999999999999854 43322 333 2222222221 23456678888876 211 2357
Q ss_pred ceEEEEEe
Q 018769 307 IHWFLQIV 314 (350)
Q Consensus 307 ~H~Hihii 314 (350)
-|+|+|.+
T Consensus 233 NHLHFQa~ 240 (403)
T PLN03103 233 NHLHFQAY 240 (403)
T ss_pred ceeeeeec
Confidence 89999965
No 39
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=88.20 E-value=3.1 Score=40.34 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=45.7
Q ss_pred eEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEE-EcCCCCccCCCceeceEEEEEe
Q 018769 245 EIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMI-QTAPLQAIDTQLAYIHWFLQIV 314 (350)
Q Consensus 245 e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~-~~~p~~~~~~~~~~~H~Hihii 314 (350)
+|+|...+|..+|.+++.+++.++..+.++-...+.+. ....|-+.| |.++..|. +..|-|..|+
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~-~~~~yv~if~N~G~~aGa----Sl~HpH~Qi~ 160 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKN-PRIKYVQIFENKGAEMGA----SLPHPHGQIW 160 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeecCccccc----CCCCCCeeee
Confidence 78899999999999999998888888777666665431 223555554 55666654 4667666654
No 40
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=87.40 E-value=0.69 Score=45.25 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC--CCccEEEEecccCccCCC--CCccccccee
Q 018769 123 DVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEY--DLIKYVQVFKNHGASAGA--SMSHSHSQLL 188 (350)
Q Consensus 123 eVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~--~~~~yv~iFkN~G~~aGa--Sl~HpH~Qi~ 188 (350)
+|.|-..+|..+|.+|+.+++.++..+.++-.+.|.+- ....| .+..|-++..|+ +..|-|.+|+
T Consensus 232 h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~py-n~~~h~~p~~~~~~~~~H~Hihii 300 (346)
T PRK11720 232 ETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPY-SMGWHGAPFNGEENDHWQLHAHFY 300 (346)
T ss_pred eEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ceeEEecccCCCCCeeEEEEEEEe
Confidence 46677789999999999999998888887766666321 23334 344577777665 4577777774
No 41
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=86.96 E-value=0.72 Score=37.70 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCceeccCCCCCCCcEEEEEecCCCccccCCCCCCCCCCcccccccCCCceeeecccceEEEEeCCCCC
Q 018769 53 CPFCIGNEHECAPEIFRVPPDPKSDWKIRVIQNLYPALSRDIGCKKDGDPDAEMRCTGDLGRVVTGFGFHDVVIESPVHS 132 (350)
Q Consensus 53 CPFC~g~e~~t~~ei~~~~~~~~~~w~~~v~~N~fP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~heVIiesp~H~ 132 (350)
|-||.=...+.+.++.- .+ . ++.+|.+.||.- ..|-.||=...|-
T Consensus 2 cif~~i~~~~~~~~vly-~d-~----~~v~~~D~~P~a-----------------------------~~H~LviPk~~~i 46 (116)
T PF11969_consen 2 CIFCIIIRGEEPERVLY-ED-D----DFVVFKDIYPKA-----------------------------PVHLLVIPKDPHI 46 (116)
T ss_dssp HHHHHHTTSSSGGGESE-EE-T----SEEEEE-TT-SC-----------------------------CEEEEEEESSSS-
T ss_pred ccceEeEcCCCCCcEEE-Ee-C----CEEEeeCCCCCc-----------------------------CcEEEEEeecCCC
Confidence 55664443333444421 12 2 688999999861 1688888876699
Q ss_pred CCcCCCCHHHHHHHHHHH---HHHHHHHhcC-CCccEEEEecccCccCCCCCcccccceecCCCCChH
Q 018769 133 VQLQDLEPREVGEVLLAC---KKRIEQIKEY-DLIKYVQVFKNHGASAGASMSHSHSQLLALPVIPPT 196 (350)
Q Consensus 133 ~~l~~~~~~~~~~~l~~~---~~r~~~l~~~-~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~ 196 (350)
.++.+|+.+++..+-.+- .+-+.+.... ..-..+.++-.+.+ |+.|-|..+++.++..+.
T Consensus 47 ~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P----S~~HLHlHvi~~~~~s~~ 110 (116)
T PF11969_consen 47 RSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP----SVYHLHLHVISPDFDSPC 110 (116)
T ss_dssp SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEEETTS--TT
T ss_pred CChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC----CcceEEEEEccCCCcCcc
Confidence 999999877665433322 2223332211 22334445555555 999999999998877653
No 42
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=1.8 Score=39.76 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=67.6
Q ss_pred CeEEEecCc----EEEEecC--CCCC--CceEE-EEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCC--CeEEE
Q 018769 223 DLQIDVTTH----FISIVPF--AATF--PFEIW-IIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNP--PFNFM 291 (350)
Q Consensus 223 E~iV~e~~~----~iaf~p~--~p~~--p~e~~-IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~--~yN~~ 291 (350)
|+|||++.. |+.+.++ .+.. .-+++ |+=+..++++.||....+.-|+++=.+++.-.-..|+.+ -..|+
T Consensus 155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mf 234 (305)
T COG5075 155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMF 234 (305)
T ss_pred ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEE
Confidence 347887764 5555443 2222 23333 555666888888988888888777666655443345433 44466
Q ss_pred EEcCCCCccCCCceeceEEEEEecCCCCCccccccccCCCCCCcHHHHHHHHHh
Q 018769 292 IQTAPLQAIDTQLAYIHWFLQIVPQLAGVGGFEIGTGCYINPVFSEDAAKVMQE 345 (350)
Q Consensus 292 ~~~~p~~~~~~~~~~~H~HihiiPR~~~~aG~El~~g~~in~~~PE~aA~~Lr~ 345 (350)
+|-.| ++||+|+||+-- +...|-+.+.|. .+..|+.-+.||-
T Consensus 235 vHY~P--------sYyhlHvHI~nI-kh~~g~~~a~gr---aIlL~DVI~~Lr~ 276 (305)
T COG5075 235 VHYQP--------SYYHLHVHIVNI-KHPHGGNVACGR---AILLEDVIENLRI 276 (305)
T ss_pred EEecc--------ceEEEEEEEEee-cccCCCCcccce---eeEHHHHHHHhcc
Confidence 66544 589999999852 222344554433 4578888888874
No 43
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=85.00 E-value=26 Score=34.99 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHhcCCCccEEEEecccCccCCCCCcccccceecCC
Q 018769 154 IEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLALP 191 (350)
Q Consensus 154 ~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~ 191 (350)
+..+.+++.+ -+|=|. .-|.||..|-|.|.+-++
T Consensus 210 ~a~~~~~p~f---rvgYNS-lGA~ASvNHLHFQa~yl~ 243 (403)
T PLN03103 210 MAAEANNPYF---RVGYNS-LGAFATINHLHFQAYYLA 243 (403)
T ss_pred HHHhcCCCcE---EEEecC-CccccCcceeeeeecccC
Confidence 3334455543 366687 666779999999999875
No 44
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=81.41 E-value=2.3 Score=41.58 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=45.2
Q ss_pred EEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC--CCccEEEEecccCccCCCCCcc--ccccee
Q 018769 123 DVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEY--DLIKYVQVFKNHGASAGASMSH--SHSQLL 188 (350)
Q Consensus 123 eVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~--~~~~yv~iFkN~G~~aGaSl~H--pH~Qi~ 188 (350)
+|.|...+|..+|.+++.+++.++..+.++-.+.|.+- ..+.|. +..|-++..|.+..| .|.+|+
T Consensus 232 h~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn-~~~h~~p~~~~~~~~~H~Hihii 300 (347)
T TIGR00209 232 ETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYS-MGWHGAPFNGEENQHWQLHAHFY 300 (347)
T ss_pred eEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-eeEEecccCCCCCcEEEEEEEEe
Confidence 46666789999999999999999988887766665321 223343 344677777765555 676664
No 45
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=80.96 E-value=0.75 Score=30.76 Aligned_cols=8 Identities=63% Similarity=1.813 Sum_probs=7.1
Q ss_pred CCCCCCCC
Q 018769 53 CPFCIGNE 60 (350)
Q Consensus 53 CPFC~g~e 60 (350)
||||+|..
T Consensus 1 CP~C~~kk 8 (43)
T PF03470_consen 1 CPFCPGKK 8 (43)
T ss_pred CCCCCCCC
Confidence 99999975
No 46
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=78.52 E-value=5.9 Score=36.82 Aligned_cols=80 Identities=10% Similarity=0.175 Sum_probs=45.1
Q ss_pred EEecCcEEEEecCCCCCCceEEEEeCCCCCCccC---CCHHHHHHHHHHHH---HHHHHHHHHcCCCCeEEEEEcCCCCc
Q 018769 226 IDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHE---LDNEKAVDLGGLLK---LTLRKISVQLNNPPFNFMIQTAPLQA 299 (350)
Q Consensus 226 V~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~---l~~~e~~~La~~l~---~v~~~l~~~~~~~~yN~~~~~~p~~~ 299 (350)
|....++++|. ....|.|.+++|-..++.+++ +++..-.-++..-+ .+.+++.+-+.....-+.+|..-...
T Consensus 58 Vd~~~gyvvlK--D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRS 135 (252)
T PRK05471 58 VDPQAGYVLLK--DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRT 135 (252)
T ss_pred EccCCCeEEEe--cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCcc
Confidence 44456677776 456689999999988877764 23222233333322 34444444343445667777643222
Q ss_pred cCCCceeceEEEEE
Q 018769 300 IDTQLAYIHWFLQI 313 (350)
Q Consensus 300 ~~~~~~~~H~Hihi 313 (350)
--++||||
T Consensus 136 ------QnQLHIHI 143 (252)
T PRK05471 136 ------QDQLHIHI 143 (252)
T ss_pred ------ccceeeeh
Confidence 24677775
No 47
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=78.14 E-value=5.5 Score=36.98 Aligned_cols=80 Identities=10% Similarity=0.186 Sum_probs=45.5
Q ss_pred EEecCcEEEEecCCCCCCceEEEEeCCCCCCccC---CCHHHHHHHHHHH---HHHHHHHHHHcCCCCeEEEEEcCCCCc
Q 018769 226 IDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHE---LDNEKAVDLGGLL---KLTLRKISVQLNNPPFNFMIQTAPLQA 299 (350)
Q Consensus 226 V~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~---l~~~e~~~La~~l---~~v~~~l~~~~~~~~yN~~~~~~p~~~ 299 (350)
|....++++|.+. ..|.|.+++|-..++.+++ +++..-.-++..- ..+.+++.+-+.....-+.+|..--..
T Consensus 57 Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRS 134 (250)
T TIGR00672 57 VKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRS 134 (250)
T ss_pred EcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcc
Confidence 4446677888777 6799999999988887763 2333223333332 233344433333334667777643222
Q ss_pred cCCCceeceEEEEE
Q 018769 300 IDTQLAYIHWFLQI 313 (350)
Q Consensus 300 ~~~~~~~~H~Hihi 313 (350)
--|+||||
T Consensus 135 ------QnQLHIHI 142 (250)
T TIGR00672 135 ------QNHFHIHI 142 (250)
T ss_pred ------cccceeeH
Confidence 24667775
No 48
>PLN02643 ADP-glucose phosphorylase
Probab=77.96 E-value=5.8 Score=38.62 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=44.7
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC-CCccEEEEecccCccCCC--CCccccc--cee
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEY-DLIKYVQVFKNHGASAGA--SMSHSHS--QLL 188 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~-~~~~yv~iFkN~G~~aGa--Sl~HpH~--Qi~ 188 (350)
--+|.|...+|..+|.+++.+++.++..+.++-...|.+- ....| .+-.|.|+..++ ...|-|. +|+
T Consensus 229 P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py-N~~~~~~P~~~~~~~~~~~H~hihi~ 300 (336)
T PLN02643 229 PFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY-NYMIQTSPLGVEESNLPYTHWFLQIV 300 (336)
T ss_pred CCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc-eeeeecCCCccccCcccceEEEEEEe
Confidence 3578888899999999999999888888877666555321 11133 344577877443 3455554 654
No 49
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=70.26 E-value=12 Score=30.64 Aligned_cols=65 Identities=26% Similarity=0.301 Sum_probs=52.0
Q ss_pred ceEEEEeCCCC---CCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceec
Q 018769 121 FHDVVIESPVH---SVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLA 189 (350)
Q Consensus 121 ~heVIiesp~H---~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a 189 (350)
.|-.||= ..| -....+.+.+.+..+|-+.+.-..++.-..+++-| .|.|+.++-|..|-|.-+++
T Consensus 51 ~HfLvIP-K~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv---~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 51 GHFLVIP-KKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYRVV---QNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred ceEEEee-cccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccceeEE---EcCCcccceEEEEEEEEEeC
Confidence 3555543 466 44556899999999999999989888766777765 49999999999999998886
No 50
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=69.55 E-value=43 Score=30.34 Aligned_cols=69 Identities=7% Similarity=0.175 Sum_probs=37.3
Q ss_pred EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCC---CHHHHH--HHHHHHH-HHHHHHHHHcCCCCeEEEEEcC
Q 018769 225 QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHEL---DNEKAV--DLGGLLK-LTLRKISVQLNNPPFNFMIQTA 295 (350)
Q Consensus 225 iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l---~~~e~~--~La~~l~-~v~~~l~~~~~~~~yN~~~~~~ 295 (350)
.|-+...+++|.+... |...+++|..++..+++- +...-. -+|=..+ -+.++|.+-+......+.+|..
T Consensus 57 eV~~~AG~av~Kd~~g--PlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~ 131 (252)
T COG2134 57 EVKPQAGYAVLKDRNG--PLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSK 131 (252)
T ss_pred eecCCCceEEEeccCC--CceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCc
Confidence 4556666777766554 777789998887776541 111111 1222222 2345555544444555666643
No 51
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=68.51 E-value=16 Score=33.39 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=36.7
Q ss_pred EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccC---CCHHHHHHHHHHH---HHHHHHHHHHcCCCCeEEEEEcCC
Q 018769 225 QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHE---LDNEKAVDLGGLL---KLTLRKISVQLNNPPFNFMIQTAP 296 (350)
Q Consensus 225 iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~---l~~~e~~~La~~l---~~v~~~l~~~~~~~~yN~~~~~~p 296 (350)
.|....+++++.+ +..|.+.++||-..++.+++ +++..-.-++..- ..+.+++.+-+.....-+.+|..-
T Consensus 28 ~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~ 103 (222)
T PF02611_consen 28 QVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQY 103 (222)
T ss_dssp EEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GG
T ss_pred EEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCcc
Confidence 3445667777775 55689999999888877764 2333334444443 334555555444557788888753
No 52
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=67.05 E-value=41 Score=32.79 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEE-EcCCCCccCCCceeceEEEEE
Q 018769 241 TFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMI-QTAPLQAIDTQLAYIHWFLQI 313 (350)
Q Consensus 241 ~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~-~~~p~~~~~~~~~~~H~Hihi 313 (350)
+....+.|.-..|..++.+++.+++.++..+.+...+.|.+.. .-.|-..| |.|+..|- +..|-|..|
T Consensus 92 ~g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~-~~~yV~iF~N~Gk~~G~----S~~HPH~Qi 160 (338)
T COG1085 92 RGKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYERE-KYKYVQIFENKGKAAGA----SLPHPHGQI 160 (338)
T ss_pred CcceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhcc-CcceEEeeeccCcccCc----cCCCCCcce
Confidence 3344466777899999999999999999999998888876542 23555554 44555443 455666554
No 53
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=59.37 E-value=5.6 Score=28.21 Aligned_cols=9 Identities=56% Similarity=1.686 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 018769 51 SSCPFCIGNE 60 (350)
Q Consensus 51 ~~CPFC~g~e 60 (350)
+.|||| |..
T Consensus 4 kPCPFC-G~~ 12 (61)
T PF14354_consen 4 KPCPFC-GSA 12 (61)
T ss_pred cCCCCC-CCc
Confidence 469999 865
No 54
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=59.13 E-value=9 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCCCCCCCCeeeccCCCCeEEEEccccCCCC
Q 018769 6 STQTQSRSPEIRKDPVNNRWVIFSPARAKRP 36 (350)
Q Consensus 6 ~~~~~~~~~e~R~dpltg~~viia~~R~~RP 36 (350)
+.-..+..-.+|+|+..|.||+.+|+|.-..
T Consensus 4 ~~p~l~~~~rl~~d~~~~~~vlL~PEgmi~L 34 (88)
T PRK02079 4 QVPTLRPGYRFQWEPAQNCHVLLYPEGMIKL 34 (88)
T ss_pred CCcccCCCcccccccccCceEEEcCCeeeee
Confidence 3444566678999999999999999986553
No 55
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=57.69 E-value=11 Score=36.58 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=37.7
Q ss_pred EEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCCCceeceEEEE
Q 018769 233 ISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDTQLAYIHWFLQ 312 (350)
Q Consensus 233 iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~~~~~~H~Hih 312 (350)
++...-.|..-+|++|+|+--....--++-+ +|--.+ ... ...+++-|.|++|..- + ..++-|+|+|
T Consensus 169 vvaIN~sPie~~H~LiiP~V~kc~pQrit~~---al~lav----~~m-~~~dd~~frlgyNSlg--a---~AsVNHLHfh 235 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRVLKCLPQRITHK---ALLLAV----TMM-AEADDPYFRLGYNSLG--A---FASVNHLHFH 235 (431)
T ss_pred eEEEecCccccCcEEEecchhccCcceeeHH---HHHHHH----HHH-HhcCCchhheecccch--h---hhhhhhhhhh
Confidence 4456677999999999995433322222222 221111 111 1234556778877531 1 2457899998
Q ss_pred Ee
Q 018769 313 IV 314 (350)
Q Consensus 313 ii 314 (350)
.+
T Consensus 236 a~ 237 (431)
T KOG2720|consen 236 AY 237 (431)
T ss_pred hh
Confidence 64
No 56
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=53.45 E-value=35 Score=29.50 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=14.0
Q ss_pred cEEEEecccCccCC-CCCcccc
Q 018769 164 KYVQVFKNHGASAG-ASMSHSH 184 (350)
Q Consensus 164 ~yv~iFkN~G~~aG-aSl~HpH 184 (350)
.-|..|+|+-..-- -++.|-|
T Consensus 133 ~~v~WF~N~~~LqSV~~v~H~H 154 (158)
T PF12239_consen 133 DNVLWFKNWPSLQSVRAVEHIH 154 (158)
T ss_pred ccEEEEeCchhcCCcCcceEEE
Confidence 46779999866432 3566766
No 57
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=51.02 E-value=39 Score=30.08 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCeEEEEEcCCCCccCCCceeceEEEEEecCCC
Q 018769 267 DLGGLLKLTLRKISVQLN-NPPFNFMIQTAPLQAIDTQLAYIHWFLQIVPQLA 318 (350)
Q Consensus 267 ~La~~l~~v~~~l~~~~~-~~~yN~~~~~~p~~~~~~~~~~~H~HihiiPR~~ 318 (350)
.+.+.+...+..+.+.+| ..-++..+|.- ...+|+|+-++|...
T Consensus 99 ~~~~~~~~~~~~~~~r~g~~ni~~a~vH~D--------E~tPH~H~~~vP~~~ 143 (196)
T PF01076_consen 99 QQKRWFEDSLEWLQERYGNENIVSAVVHLD--------ETTPHMHFDVVPIDE 143 (196)
T ss_pred HHHHHHHHHHHHHHHHCCchhEEEEEEECC--------CCCcceEEEEeeccc
Confidence 445666677777777788 44888999962 346899999999764
No 58
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=49.83 E-value=58 Score=26.91 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=51.3
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCC--CceeceEEEEEecCCCCCccccccccCCCCC
Q 018769 256 HFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYINP 333 (350)
Q Consensus 256 ~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~in~ 333 (350)
++.+.+.+-+.+... +++++...-+..|..-.+..+|.-+..|-+. --.-.|+-||-.|-..+ +.+.+.+ .++
T Consensus 13 dlygc~~~~L~d~~~-l~~~l~~aa~~~g~tiv~~~~h~F~p~GvTgv~llaESHisIHTwPE~gy-aavDift---Cg~ 87 (123)
T PRK01706 13 DLWGVDFSLLDDMYF-LEHHLVEAADLSGAHVLNVSTKEFDPQGVTVLVLLSESHLSIHTYPEKNF-AAIDCYT---CGT 87 (123)
T ss_pred EEeCCChHHcCCHHH-HHHHHHHHHHHcCCeEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCCe-EEEEEEe---cCC
Confidence 455666655555543 3333333223345555556666533222110 01125999999998754 5566665 344
Q ss_pred -CcHHHHHHHHHhccCC
Q 018769 334 -VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 334 -~~PE~aA~~Lr~~~~~ 349 (350)
..|+.+.+.|++...|
T Consensus 88 ~~~p~~a~~~L~~~l~~ 104 (123)
T PRK01706 88 TVEPQIAIDYIVSILKP 104 (123)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 6899999999986554
No 59
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=48.83 E-value=65 Score=26.06 Aligned_cols=89 Identities=16% Similarity=0.071 Sum_probs=49.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCC--CceeceEEEEEecCCCCCccccccccCCCCC
Q 018769 256 HFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYINP 333 (350)
Q Consensus 256 ~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~in~ 333 (350)
++.+.+.+-+.|...+-+.+..+. +..|..-....+|.-+..|-+. --.-.|+-||-.|-+.+ +.+.+.+ .++
T Consensus 10 dly~c~~~~L~d~~~l~~~l~~a~-~~~g~ti~~~~~h~F~p~Gvt~v~llaESHisiHTwPE~gy-aavDift---Cg~ 84 (112)
T TIGR03330 10 DLYGCDPEKLDDVEFIEEILLEAA-KVAGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEYGY-AAVDVFT---CGD 84 (112)
T ss_pred EEeCCChHHCCCHHHHHHHHHHHH-HHcCCEEEEEEEEEcCCCcEEEEEEecccEEEEEeccCCCc-EEEEEEe---cCC
Confidence 456666655544433333222223 2345444555555433222110 01125999999998753 5567665 344
Q ss_pred -CcHHHHHHHHHhccCC
Q 018769 334 -VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 334 -~~PE~aA~~Lr~~~~~ 349 (350)
..|+.+.+.|++...+
T Consensus 85 ~~~p~~a~~~l~~~f~~ 101 (112)
T TIGR03330 85 HSDPEKAFEYLVEALKP 101 (112)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 6899999999987654
No 60
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=47.36 E-value=31 Score=31.92 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=35.4
Q ss_pred EEEecCCCCCCceEEEEeCCCCCCccCCCH-HHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEc-CCCCccCCCceeceEE
Q 018769 233 ISIVPFAATFPFEIWIIPRNHSSHFHELDN-EKAVDLGGLLKLTLRKISVQLNNPPFNFMIQT-APLQAIDTQLAYIHWF 310 (350)
Q Consensus 233 iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~-~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~-~p~~~~~~~~~~~H~H 310 (350)
..+..-+|.-+.|++||-+. |.+-.. =...||..+.+ ++..+ ++ ++||+ ||..|. +-.|=|
T Consensus 95 ~~llNKF~VVdeHlLiVTre----fedQ~s~LTl~Df~ta~~-vL~~l------dg--lvFYNsGp~aGa----Sq~HkH 157 (298)
T COG4360 95 KLLLNKFPVVDEHLLIVTRE----FEDQESALTLADFTTAYA-VLCGL------DG--LVFYNSGPIAGA----SQDHKH 157 (298)
T ss_pred hhhhhcCCcccceeEEeehh----hhhccccCCHHHHHHHHH-HHhcc------cc--eEEecCCCCcCc----CCCccc
Confidence 44556678889999998643 222110 02223332222 22222 22 66654 787764 356778
Q ss_pred EEEec
Q 018769 311 LQIVP 315 (350)
Q Consensus 311 ihiiP 315 (350)
+.|+|
T Consensus 158 LQi~p 162 (298)
T COG4360 158 LQIVP 162 (298)
T ss_pred eeEee
Confidence 88876
No 61
>PF14317 YcxB: YcxB-like protein
Probab=46.54 E-value=38 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=26.2
Q ss_pred EEEecCcEEEEecCCCCCCceEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 018769 225 QIDVTTHFISIVPFAATFPFEIWIIPRNHSSHFHELDNEKAVDLGGLLK 273 (350)
Q Consensus 225 iV~e~~~~iaf~p~~p~~p~e~~IiPkrH~~~~~~l~~~e~~~La~~l~ 273 (350)
-|.++++.+.+. ..+...+++||+. +++++..+|...|+
T Consensus 24 ~v~e~~~~~~l~----~~~~~~~~iPk~~------f~~~e~~~f~~~lk 62 (62)
T PF14317_consen 24 KVVETKDYFYLY----LGKNQAFIIPKRA------FSEEEKEEFREFLK 62 (62)
T ss_pred EEEEeCCEEEEE----ECCCeEEEEEHHH------CCHhHHHHHHHHhC
Confidence 466777665542 1455778999984 56778888776653
No 62
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=43.09 E-value=62 Score=28.45 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=39.8
Q ss_pred ceEEEEeCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEc-CCCCccCCCceeceEEEEEe
Q 018769 244 FEIWIIPRNHSSHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQT-APLQAIDTQLAYIHWFLQIV 314 (350)
Q Consensus 244 ~e~~IiPkrH~~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~-~p~~~~~~~~~~~H~Hihii 314 (350)
.||.|--.+|..+|.+|+.+++..+..+.++-...|.+ -....|-+.|-+ |..+|. +..|-|-.|+
T Consensus 111 hEViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~-~~~~~yv~~FeN~G~~~Ga----Sl~HpHsQi~ 177 (183)
T PF01087_consen 111 HEVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSS-DKYIKYVLIFENEGYEAGA----SLPHPHSQII 177 (183)
T ss_dssp EEEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT--TT-SEEEEEEEESGGGT-----SSSSSEEEEE
T ss_pred eEEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhc-cCCcceEEEEEecCCcCCC----CCCCCceEEe
Confidence 46777777899999999999988888877765555432 124478777744 655553 3445555554
No 63
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=39.99 E-value=96 Score=26.25 Aligned_cols=89 Identities=13% Similarity=0.006 Sum_probs=51.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCC--CceeceEEEEEecCCCCCccccccccCCCCC
Q 018769 256 HFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYINP 333 (350)
Q Consensus 256 ~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~in~ 333 (350)
++.+.+.+-+.+...+-+.+..+.+ ..|..-....+|.-+..|-+. --.-.|+-||-.|-..+ +.+.+.+ .++
T Consensus 11 Dlygc~~~~L~d~e~l~~~l~~Aa~-~~gatil~~~~h~F~P~GvTgv~lLaESHisIHTwPE~gy-aavDIft---Cg~ 85 (139)
T PRK04025 11 EAAGCDPEVLGDADRIREIFLEAAK-RGNMEVKASYFFKFSPTGVSGVVIVAESHISVHTWPEKGY-AALDVYT---CGE 85 (139)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHH-HcCCeEEEEEEEEcCCCcEEEEEEeccceEEEEecccCCe-EEEEEEe---cCC
Confidence 4666666655555444443333333 345444555555433222110 01125999999998754 4566665 344
Q ss_pred -CcHHHHHHHHHhccCC
Q 018769 334 -VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 334 -~~PE~aA~~Lr~~~~~ 349 (350)
..|+.+.+.|++...|
T Consensus 86 ~~~p~~a~~~L~~~f~~ 102 (139)
T PRK04025 86 KADPEKAVDYILEQFKA 102 (139)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 5899999999986554
No 64
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=39.90 E-value=41 Score=29.32 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CccEEEEeccc--------CccCCCCCcccccceecCCCCChHHHHHHHHHHHHHh
Q 018769 140 PREVGEVLLACKKRIEQIKEYD--LIKYVQVFKNH--------GASAGASMSHSHSQLLALPVIPPTISARINSTKEYFD 209 (350)
Q Consensus 140 ~~~~~~~l~~~~~r~~~l~~~~--~~~yv~iFkN~--------G~~aGaSl~HpH~Qi~a~~~~p~~~~~~~~~~~~y~~ 209 (350)
.+.|..++...++.+.-|+.+. +-.++.+|.|. |--|+-|+.+-|.-+|...|+.+..+ .+++|+
T Consensus 45 ~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~HavPSM~~LHLHVISkDf~S~sLK-----NKKHwn 119 (184)
T KOG0562|consen 45 RSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAVPSMNNLHLHVISKDFVSPSLK-----NKKHWN 119 (184)
T ss_pred cchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeeccCcchhheeEEEeecccCCchhc-----cchhhc
Confidence 4445556666666666554333 33466666665 99999999999999999999988543 345666
Q ss_pred hcCCCccc
Q 018769 210 QTGKCCLC 217 (350)
Q Consensus 210 ~~g~c~fc 217 (350)
....-+|-
T Consensus 120 SFnT~fFv 127 (184)
T KOG0562|consen 120 SFNTEFFV 127 (184)
T ss_pred ccCcccee
Confidence 55443443
No 65
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=37.58 E-value=90 Score=27.10 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=34.6
Q ss_pred eEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc--CCCccEEEEecccCccCCCC----Cccccccee
Q 018769 122 HDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKE--YDLIKYVQVFKNHGASAGAS----MSHSHSQLL 188 (350)
Q Consensus 122 heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~--~~~~~yv~iFkN~G~~aGaS----l~HpH~Qi~ 188 (350)
-||+|...+|..+|.+++.++..++..+.+.-++.+.+ +....|.+..-+ .+.+.. .-|+|-++-
T Consensus 50 ~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihq--aP~~~~~~~~~fH~H~e~~ 120 (166)
T PF02744_consen 50 FEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQ--APVNGEDPEHWFHPHFEPP 120 (166)
T ss_dssp T-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE-----SSSS--TT--EEEEE--
T ss_pred cEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhc--CCCCcccchhhhhcccccc
Confidence 46888889999999999999988887777665554421 245678777632 222222 288887763
No 66
>PF13964 Kelch_6: Kelch motif
Probab=37.01 E-value=25 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=15.6
Q ss_pred eeeccCCCCeEEEEccccC
Q 018769 15 EIRKDPVNNRWVIFSPARA 33 (350)
Q Consensus 15 e~R~dpltg~~viia~~R~ 33 (350)
=.||||.|++|..+.+-..
T Consensus 30 v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 30 VERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEcCCCCcEEECCCCCC
Confidence 3799999999999976443
No 67
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=33.42 E-value=1.5e+02 Score=24.64 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCC--CceeceEEEEEecCCCCCccccccccCCCCC
Q 018769 256 HFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYINP 333 (350)
Q Consensus 256 ~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~in~ 333 (350)
++.+.+.+-+.|...+-+.+..+.+ ..|..-....+|.-+..|-+. --.-.|+-||-.|-+.+ +.+.+.+ .++
T Consensus 11 dlygC~~~~L~d~~~l~~~l~~a~~-~~g~til~~~~h~F~p~GvTgv~llaESHisIHTwPE~gy-aavDift---Cg~ 85 (127)
T PRK03124 11 ELYGCDFDKLNDMELIEDIMVDAAL-EAGAEVREVAFHKFSPQGVSGVVVISESHLTIHTWPELGY-AAVDVFT---CGD 85 (127)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHH-HcCCeEEEEEeEEcCCCcEEEEEEeeccEEEEEeCccCCe-EEEEEEe---cCC
Confidence 4566666555454433333333332 235444445555433222110 01125999999998754 4566665 344
Q ss_pred -CcHHHHHHHHHhccCC
Q 018769 334 -VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 334 -~~PE~aA~~Lr~~~~~ 349 (350)
.+|+.+.+.|++...|
T Consensus 86 ~~~p~~a~~~L~~~f~~ 102 (127)
T PRK03124 86 RVDPWDACNYIAEGLGA 102 (127)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 6999999999986554
No 68
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=32.00 E-value=24 Score=24.39 Aligned_cols=9 Identities=56% Similarity=1.475 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 018769 51 SSCPFCIGN 59 (350)
Q Consensus 51 ~~CPFC~g~ 59 (350)
+.||||-|.
T Consensus 2 kPCPfCGg~ 10 (53)
T TIGR03655 2 KPCPFCGGA 10 (53)
T ss_pred CCCCCCCCc
Confidence 359999664
No 69
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=30.42 E-value=53 Score=29.22 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHH-----------------HHHHHHHHHhcCC-CccEEEEecccCccCCCCCcc
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLL-----------------ACKKRIEQIKEYD-LIKYVQVFKNHGASAGASMSH 182 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~-----------------~~~~r~~~l~~~~-~~~yv~iFkN~G~~aGaSl~H 182 (350)
.-+|.-+||+|.-.+-+--++.+..++. ....|+.+|++-| .+++|++=-=-|+.+|+.|..
T Consensus 104 Vw~VM~~TP~HtYQILTKRp~rm~~v~~~~~~l~NVWlGtSvEn~~v~~Rid~LRqVPAavRFvS~EPLiGsv~g~~L~~ 183 (250)
T COG4422 104 VWEVMRATPRHTYQILTKRPDRMARVVHKLEVLSNVWLGTSVENVRVFRRIDDLRQVPAAVRFVSFEPLIGSVDGINLTN 183 (250)
T ss_pred HHHHHHhCcccceehhccCcHHHHHHHhcCCcccceeeeceechhHHHHHHHHHhcCchheEEeeccccccccccccccc
Confidence 3467778999998877777777777764 3456888998877 789999888999999999999
Q ss_pred cccceecCCC
Q 018769 183 SHSQLLALPV 192 (350)
Q Consensus 183 pH~Qi~a~~~ 192 (350)
-|.-|++-..
T Consensus 184 I~WaIvGGES 193 (250)
T COG4422 184 IHWAIVGGES 193 (250)
T ss_pred eeEEEecCcC
Confidence 9999997653
No 70
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=29.97 E-value=1.9e+02 Score=24.00 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=51.5
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcC-CCCccCC--CceeceEEEEEecCCCCCccccccccCCC
Q 018769 255 SHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTA-PLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYI 331 (350)
Q Consensus 255 ~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~-p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~i 331 (350)
.++.+.+.+-+.|...+-+.+..+. +..|..-....+|.- |..|-+. --.-.|+-||-.|-+.+ +.+.+.+ .
T Consensus 21 ~DlygC~~~~L~d~~~l~~~l~~aa-~~~g~til~~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gy-aavDift---C 95 (127)
T PRK00458 21 GNLYDCDEEVLKDEERLEQIVKEAA-KIANMTLLDIKSWKFGKKGGVSVIALVLESHIAIHTWPEYNF-ATVDVYT---C 95 (127)
T ss_pred EEEeCCChHHcCCHHHHHHHHHHHH-HHcCCEEEEEEEEECCCCCCEEEEEEecccEEEEEeCcCCCc-EEEEEEe---c
Confidence 3566676665555444433333333 334544455556653 3222110 01125999999998754 4566665 3
Q ss_pred CC-CcHHHHHHHHHhccCC
Q 018769 332 NP-VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 332 n~-~~PE~aA~~Lr~~~~~ 349 (350)
++ ..|+.+.+.|++...|
T Consensus 96 g~~~~p~~a~~~L~~~f~~ 114 (127)
T PRK00458 96 GEHTDPQKAFEYIVSKLKP 114 (127)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 44 5899999999986544
No 71
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=28.08 E-value=2.8e+02 Score=23.44 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=50.7
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccC--CCceeceEEEEEecCCCCCccccccccCCCC
Q 018769 255 SHFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAID--TQLAYIHWFLQIVPQLAGVGGFEIGTGCYIN 332 (350)
Q Consensus 255 ~~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~--~~~~~~H~HihiiPR~~~~aG~El~~g~~in 332 (350)
.++.+.+.+-+.+...+-+.+..+.+ ..|..-....+|.-+..|-+ .--.-.|+-||-.|-+.+ +.+.+.+ .+
T Consensus 23 vdlygc~~~~L~d~~~l~~~l~~Aa~-~~gativ~~~~h~F~P~GvTgv~lLaESHisIHTwPE~gy-aavDift---Cg 97 (139)
T PRK02770 23 LELYDCDAEKLNDEAFLRTTLTEAAK-RAGATLLNLITHRFEPQGVTALALLAESHISIHTWPESGY-AAVDVFT---CG 97 (139)
T ss_pred EEEeCCChHHCCCHHHHHHHHHHHHH-HcCCEEEEEEeEEcCCCeEEEEEEecccEEEEEeCcCCCc-EEEEEEe---cC
Confidence 35677777655555444443333332 34444444445543222211 001125999999998754 4566665 34
Q ss_pred C-CcHHHHHHHHHhccCC
Q 018769 333 P-VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 333 ~-~~PE~aA~~Lr~~~~~ 349 (350)
+ ..|+.+.+.|++...+
T Consensus 98 ~~~~p~~a~~~L~~~l~~ 115 (139)
T PRK02770 98 DHTMPEKACQYLIEELMA 115 (139)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 4 5899999999976544
No 72
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=25.09 E-value=92 Score=29.34 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 018769 128 SPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLI 163 (350)
Q Consensus 128 sp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~ 163 (350)
.++|.+++.+++.++|..+++...+-=..++++.+.
T Consensus 38 ~~r~llsikd~s~eeik~ll~rase~K~~~Kqn~e~ 73 (346)
T KOG1504|consen 38 DLRDLLSIKDFSTEEIKTLLDRASEVKALLKQNGER 73 (346)
T ss_pred chhheeeeccCChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 458889999999999999999887766666665443
No 73
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=24.94 E-value=48 Score=28.59 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=17.2
Q ss_pred CCeeeccCCCCeEEEEcccc
Q 018769 13 SPEIRKDPVNNRWVIFSPAR 32 (350)
Q Consensus 13 ~~e~R~dpltg~~viia~~R 32 (350)
.-.|+|||||++|++..+..
T Consensus 70 ~~~L~Y~~Ltr~Y~v~~~~~ 89 (165)
T PF14334_consen 70 RYRLSYDPLTREYRVTDGGS 89 (165)
T ss_pred EEEEEEeccCeeEEEEeCCC
Confidence 34799999999999998864
No 74
>smart00612 Kelch Kelch domain.
Probab=24.85 E-value=44 Score=21.12 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.6
Q ss_pred eeccCCCCeEEEEcc
Q 018769 16 IRKDPVNNRWVIFSP 30 (350)
Q Consensus 16 ~R~dpltg~~viia~ 30 (350)
.+|||.+++|..+++
T Consensus 18 ~~yd~~~~~W~~~~~ 32 (47)
T smart00612 18 EVYDPETNKWTPLPS 32 (47)
T ss_pred EEECCCCCeEccCCC
Confidence 579999999987664
No 75
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=24.66 E-value=2.9e+02 Score=27.70 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=9.6
Q ss_pred cHHHHHHHHHhcc
Q 018769 335 FSEDAAKVMQEVN 347 (350)
Q Consensus 335 ~PE~aA~~Lr~~~ 347 (350)
..|..|+.||+..
T Consensus 163 ~Re~FAE~LRe~G 175 (446)
T PRK13863 163 LRIKMAEISLRHG 175 (446)
T ss_pred HHHHHHHHHHhcC
Confidence 4678888888654
No 76
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=24.57 E-value=1.2e+02 Score=25.45 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 018769 130 VHSVQLQDLEPREVGEVLLACKKRIEQI 157 (350)
Q Consensus 130 ~H~~~l~~~~~~~~~~~l~~~~~r~~~l 157 (350)
+|..++.+++.+++..+|....+--...
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~ 28 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAP 28 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHH
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhh
Confidence 5778999999999999999886644433
No 77
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=24.26 E-value=2.6e+02 Score=23.36 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=48.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccC--CCceeceEEEEEecCCCCCccccccccCCCCC
Q 018769 256 HFHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAID--TQLAYIHWFLQIVPQLAGVGGFEIGTGCYINP 333 (350)
Q Consensus 256 ~~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~--~~~~~~H~HihiiPR~~~~aG~El~~g~~in~ 333 (350)
++.+.+.+-+.|...+-+.+..+.+ ..|..-....+|.-+..|-+ .--.-.|+-||-.|-+.+ +.+.+.+ + -+.
T Consensus 12 dlygc~~~~L~D~~~l~~~l~~aa~-~~g~tiv~~~~h~F~p~GvTgv~lLaESHisIHTwPE~gy-aavDift-C-g~~ 87 (131)
T PRK01236 12 DLYGVDPELIDRVEDIREILEGAVK-YAELTKISSHYYQFNPHGATGVVLLAESHISIHTWPEYGL-VTLDVYT-C-GDP 87 (131)
T ss_pred EEeCCChHHcCCHHHHHHHHHHHHH-HCCCEEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCCe-EEEEEEe-c-CCC
Confidence 4666666655554433333333332 34443333444443212211 001125999999998754 4566665 1 233
Q ss_pred CcHHHHHHHHHhccCC
Q 018769 334 VFSEDAAKVMQEVNVP 349 (350)
Q Consensus 334 ~~PE~aA~~Lr~~~~~ 349 (350)
..|+.+.+.|++...|
T Consensus 88 ~~p~~a~~~L~~~f~~ 103 (131)
T PRK01236 88 SKADKAFEYIIKKLKP 103 (131)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 6899999999986544
No 78
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=23.60 E-value=56 Score=21.10 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.9
Q ss_pred eeeccCCCCeEEEEcc
Q 018769 15 EIRKDPVNNRWVIFSP 30 (350)
Q Consensus 15 e~R~dpltg~~viia~ 30 (350)
=.+||+.+++|..+++
T Consensus 30 v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 30 VEVYDPETNTWEELPP 45 (47)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEcCC
Confidence 3789999999998875
No 79
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=4.8e+02 Score=27.07 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=41.7
Q ss_pred ceEEEEeCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCCCccEEEEecccCccCCCCCcccccceecCCCCChHHHHH
Q 018769 121 FHDVVIESPVHSVQLQDLEPREVGEVLLACKKRIEQIKEYDLIKYVQVFKNHGASAGASMSHSHSQLLALPVIPPTISAR 200 (350)
Q Consensus 121 ~heVIiesp~H~~~l~~~~~~~~~~~l~~~~~r~~~l~~~~~~~yv~iFkN~G~~aGaSl~HpH~Qi~a~~~~p~~~~~~ 200 (350)
.|-+||=+ .|...--.++.+.+. =|..|+..+..+.+. .=+=|.+|+|- -|-+- -||.-|=++|+. ++.
T Consensus 443 gHciIvpt-qH~~~t~slDEdvWD-EIrnfrKcL~~Mfas-~n~dviFyE~a---~~l~r-rpH~~IeCIPvp----qei 511 (628)
T KOG2477|consen 443 GHCIIVPT-QHRINTLSLDEDVWD-EIRNFRKCLALMFAS-MNLDVIFYENA---PSLQR-RPHTAIECIPVP----QEI 511 (628)
T ss_pred CceEEecc-cccccccccchHHHH-HHHHHHHHHHHHHHh-cCCCeEEEecc---Ccccc-CCceeEEEeech----HHh
Confidence 35566555 777533333333222 233344444443322 22347788886 33333 889877666643 235
Q ss_pred HHHHHHHHhh
Q 018769 201 INSTKEYFDQ 210 (350)
Q Consensus 201 ~~~~~~y~~~ 210 (350)
..-+..||.+
T Consensus 512 g~map~YFKk 521 (628)
T KOG2477|consen 512 GSMAPAYFKK 521 (628)
T ss_pred hhhhhHHHHH
Confidence 5667888887
No 80
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=22.74 E-value=1.4e+02 Score=23.66 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=45.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcCCCCccCC--CceeceEEEEEecCCCCCccccccccCCCCCC
Q 018769 257 FHELDNEKAVDLGGLLKLTLRKISVQLNNPPFNFMIQTAPLQAIDT--QLAYIHWFLQIVPQLAGVGGFEIGTGCYINPV 334 (350)
Q Consensus 257 ~~~l~~~e~~~La~~l~~v~~~l~~~~~~~~yN~~~~~~p~~~~~~--~~~~~H~HihiiPR~~~~aG~El~~g~~in~~ 334 (350)
+.+.+.+.+.+...+-+.+.+.. +..|....+..++.-..+|-+. --.-.|+-+|-.|-..+ +...+.+ .++.
T Consensus 6 ~~~c~~~~L~d~~~l~~~l~~a~-~~~g~~~~~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~-~avDift---C~~~ 80 (106)
T PF02675_consen 6 LYGCDPDLLNDAEALEKILRDAA-KAAGLTVLSISFHKFEPQGVTGVALLAESHISIHTWPEHGY-AAVDIFT---CGEF 80 (106)
T ss_dssp EES--HHHCTSHHHHHHHHHHHH-HHCT-EEEEEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTE-EEEEEEE---ESTH
T ss_pred EECCChHHCCCHHHHHHHHHHHH-HHcCCEEEEEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCe-EEEEEEE---cCCC
Confidence 44454554444433333333333 3345444445555432222110 00125999999998764 3456665 4457
Q ss_pred cHHHHHHHHHhccCC
Q 018769 335 FSEDAAKVMQEVNVP 349 (350)
Q Consensus 335 ~PE~aA~~Lr~~~~~ 349 (350)
.|+.+++.|++...|
T Consensus 81 ~p~~a~~~l~~~f~~ 95 (106)
T PF02675_consen 81 DPEKAIEYLKKAFKP 95 (106)
T ss_dssp HHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHhCC
Confidence 999999999976544
No 81
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=22.38 E-value=68 Score=22.47 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=24.0
Q ss_pred HHHHHHHH--hcCC---CccEEEEecccCccCCCC
Q 018769 150 CKKRIEQI--KEYD---LIKYVQVFKNHGASAGAS 179 (350)
Q Consensus 150 ~~~r~~~l--~~~~---~~~yv~iFkN~G~~aGaS 179 (350)
|.||+.++ ..|+ .-+|++|-+|.....|..
T Consensus 1 W~Dki~d~L~G~d~~~~~~r~aLIC~~C~~hNGla 35 (54)
T PF10058_consen 1 WFDKILDVLLGDDPTSPSNRYALICSKCFSHNGLA 35 (54)
T ss_pred ChHHHHHHHhCCCCccccCceeEECcccchhhccc
Confidence 67787774 5677 889999999998877764
No 82
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=21.81 E-value=52 Score=23.98 Aligned_cols=11 Identities=36% Similarity=0.344 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q 018769 145 EVLLACKKRIE 155 (350)
Q Consensus 145 ~~l~~~~~r~~ 155 (350)
..+++|-.|..
T Consensus 45 ~Aie~WN~Ra~ 55 (64)
T PRK09710 45 EALERWNKRTT 55 (64)
T ss_pred HHHHHHHhhhc
Confidence 37788877765
No 83
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=21.43 E-value=1.2e+02 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.0
Q ss_pred ceEEEEeCCCCCCccCCCHHHHHHHH
Q 018769 244 FEIWIIPRNHSSHFHELDNEKAVDLG 269 (350)
Q Consensus 244 ~e~~IiPkrH~~~~~~l~~~e~~~La 269 (350)
-+.+|+|.+... +|+++++.++|
T Consensus 53 ~~~lVlP~~P~~---~lse~~L~~va 75 (77)
T TIGR03793 53 VLYLVLPVNPDI---ELTDEQLDAVA 75 (77)
T ss_pred eEEEEecCCCCC---CCCHHHHHHhh
Confidence 355789988765 79999998876
No 84
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=21.05 E-value=66 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=17.6
Q ss_pred CCeeeccCCCCeEEEEcccc
Q 018769 13 SPEIRKDPVNNRWVIFSPAR 32 (350)
Q Consensus 13 ~~e~R~dpltg~~viia~~R 32 (350)
.-.+|+|..-|+||++.|++
T Consensus 6 ~~r~~~~~v~~~~Vl~~p~~ 25 (81)
T TIGR03859 6 GYRLQWERAQDCYVLLYPEG 25 (81)
T ss_pred CeeeeeccccCcEEEEcCCc
Confidence 34799999999999999975
Done!