Query 018772
Match_columns 350
No_of_seqs 394 out of 1783
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 4.5E-15 1.5E-19 114.7 3.6 57 2-59 8-65 (77)
2 2rhk_C Cleavage and polyadenyl 99.5 3.6E-15 1.2E-19 113.8 1.7 55 3-58 15-70 (72)
3 2cqe_A KIAA1064 protein; CCCH 99.3 1.4E-12 4.7E-17 105.3 4.0 50 3-57 12-62 (98)
4 3d2q_A Muscleblind-like protei 99.2 8.8E-13 3E-17 99.9 0.4 54 3-57 5-66 (70)
5 1m9o_A Tristetraproline; Cys3H 99.2 2.2E-12 7.4E-17 99.0 2.6 54 3-56 11-75 (77)
6 3ztg_A E3 ubiquitin-protein li 99.2 1.6E-11 5.5E-16 96.6 6.0 72 192-284 11-82 (92)
7 2e5s_A Otthump00000018578; ZF- 99.2 1.1E-12 3.8E-17 105.7 -2.1 55 3-58 19-81 (98)
8 1iym_A EL5; ring-H2 finger, ub 99.2 1.8E-11 6.2E-16 87.1 3.8 52 192-259 3-54 (55)
9 2kiz_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 89.2 4.9 57 191-264 11-67 (69)
10 1t1h_A Gspef-atpub14, armadill 99.1 5E-11 1.7E-15 90.9 5.2 69 191-285 5-75 (78)
11 3ng2_A RNF4, snurf, ring finge 99.1 2.6E-11 8.9E-16 90.5 2.9 58 189-259 5-62 (71)
12 2y43_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 94.6 5.0 67 193-285 21-89 (99)
13 2yur_A Retinoblastoma-binding 99.1 4.4E-11 1.5E-15 90.7 3.8 50 192-258 13-62 (74)
14 2djb_A Polycomb group ring fin 99.1 5.5E-11 1.9E-15 89.6 4.2 50 192-260 13-62 (72)
15 2ea6_A Ring finger protein 4; 99.1 3.5E-11 1.2E-15 89.1 3.0 55 192-259 13-67 (69)
16 2csy_A Zinc finger protein 183 99.1 7.5E-11 2.6E-15 90.8 4.8 64 191-283 12-75 (81)
17 2ecl_A Ring-box protein 2; RNF 99.1 5.9E-11 2E-15 91.9 4.0 57 193-260 14-76 (81)
18 2xeu_A Ring finger protein 4; 99.1 3.8E-11 1.3E-15 87.6 2.7 54 193-259 2-55 (64)
19 2ep4_A Ring finger protein 24; 99.1 8.5E-11 2.9E-15 88.7 4.3 54 191-261 12-65 (74)
20 3lrq_A E3 ubiquitin-protein li 99.1 1.6E-10 5.5E-15 92.8 6.1 51 191-259 19-69 (100)
21 2ckl_A Polycomb group ring fin 99.1 1.1E-10 3.7E-15 94.8 5.0 52 191-261 12-63 (108)
22 2ecm_A Ring finger and CHY zin 99.0 1.1E-10 3.6E-15 82.9 4.0 51 192-258 3-53 (55)
23 4ayc_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 99.0 4.6 50 193-262 52-101 (138)
24 1g25_A CDK-activating kinase a 99.0 1.2E-10 4.2E-15 85.8 3.9 53 193-259 2-54 (65)
25 1chc_A Equine herpes virus-1 r 99.0 1.3E-10 4.5E-15 86.1 4.0 54 192-264 3-56 (68)
26 3d2n_A Muscleblind-like protei 99.0 6.3E-11 2.1E-15 92.6 1.9 54 3-57 8-67 (83)
27 3fl2_A E3 ubiquitin-protein li 99.0 2.6E-10 8.8E-15 94.8 5.0 70 192-284 50-119 (124)
28 1v87_A Deltex protein 2; ring- 99.0 2.2E-10 7.5E-15 93.6 4.4 65 190-261 21-95 (114)
29 1x4j_A Ring finger protein 38; 99.0 1.4E-10 4.8E-15 87.9 3.0 51 192-259 21-71 (75)
30 2d8t_A Dactylidin, ring finger 99.0 1.5E-10 5.1E-15 87.0 2.6 49 191-259 12-60 (71)
31 2l0b_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 90.4 3.6 51 192-259 38-88 (91)
32 2ysl_A Tripartite motif-contai 99.0 3.2E-10 1.1E-14 85.1 4.1 52 191-259 17-68 (73)
33 2ecy_A TNF receptor-associated 99.0 3.3E-10 1.1E-14 83.7 4.1 50 191-259 12-61 (66)
34 1jm7_A BRCA1, breast cancer ty 99.0 5.3E-10 1.8E-14 90.7 5.5 77 193-286 20-98 (112)
35 2ect_A Ring finger protein 126 98.9 3.3E-10 1.1E-14 86.3 3.4 53 191-260 12-64 (78)
36 2ct2_A Tripartite motif protei 98.9 5.8E-10 2E-14 86.5 4.4 56 191-259 12-67 (88)
37 2cqe_A KIAA1064 protein; CCCH 98.9 1.2E-09 4E-14 88.0 6.2 33 22-54 2-35 (98)
38 2egp_A Tripartite motif-contai 98.9 3.1E-10 1.1E-14 86.3 2.3 56 191-259 9-64 (79)
39 3dpl_R Ring-box protein 1; ubi 98.9 8.6E-10 2.9E-14 90.0 4.4 57 193-260 36-101 (106)
40 2ysj_A Tripartite motif-contai 98.9 1E-09 3.5E-14 80.2 4.3 47 191-254 17-63 (63)
41 2kr4_A Ubiquitin conjugation f 98.9 1.7E-09 5.9E-14 84.5 5.6 66 192-284 12-79 (85)
42 3l11_A E3 ubiquitin-protein li 98.9 4.2E-10 1.4E-14 92.2 1.8 49 193-260 14-62 (115)
43 2ecw_A Tripartite motif-contai 98.9 1.3E-09 4.6E-14 83.5 4.5 54 192-259 17-70 (85)
44 1z6u_A NP95-like ring finger p 98.9 1.5E-09 5.1E-14 93.7 4.9 71 192-285 76-146 (150)
45 2ckl_B Ubiquitin ligase protei 98.9 1.2E-09 4E-14 95.2 4.0 69 193-283 53-121 (165)
46 2rpp_A Muscleblind-like protei 98.9 3.6E-10 1.2E-14 89.4 0.6 53 4-57 17-75 (89)
47 2yu4_A E3 SUMO-protein ligase 98.8 2.5E-09 8.4E-14 85.0 5.4 75 192-286 5-84 (94)
48 2ecn_A Ring finger protein 141 98.8 4.8E-10 1.7E-14 83.6 0.9 49 191-260 12-60 (70)
49 2ecv_A Tripartite motif-contai 98.8 1.6E-09 5.4E-14 83.1 3.9 54 192-259 17-70 (85)
50 4ap4_A E3 ubiquitin ligase RNF 98.8 9.8E-10 3.3E-14 91.1 2.8 56 192-260 5-60 (133)
51 1e4u_A Transcriptional repress 98.8 2.1E-09 7.3E-14 82.8 4.2 55 191-260 8-62 (78)
52 1jm7_B BARD1, BRCA1-associated 98.8 2.7E-09 9.3E-14 87.8 5.1 66 192-283 20-85 (117)
53 2ecj_A Tripartite motif-contai 98.8 2.8E-09 9.5E-14 76.2 4.3 47 191-254 12-58 (58)
54 2kre_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 85.1 5.2 67 193-286 28-96 (100)
55 3hct_A TNF receptor-associated 98.8 1.9E-09 6.4E-14 88.9 3.3 51 191-260 15-65 (118)
56 1m9o_A Tristetraproline; Cys3H 98.8 1.8E-09 6.1E-14 82.6 2.9 28 30-57 10-38 (77)
57 1wgm_A Ubiquitin conjugation f 98.8 4.7E-09 1.6E-13 84.3 5.4 67 192-285 20-89 (98)
58 2rhk_C Cleavage and polyadenyl 98.8 2.9E-09 9.9E-14 81.0 3.3 27 30-56 14-40 (72)
59 1rmd_A RAG1; V(D)J recombinati 98.8 5E-09 1.7E-13 85.9 4.7 48 193-259 22-69 (116)
60 1bor_A Transcription factor PM 98.8 1.1E-09 3.7E-14 78.8 0.4 47 191-260 3-49 (56)
61 2d9n_A Cleavage and polyadenyl 98.7 5E-09 1.7E-13 80.6 3.8 27 30-56 8-34 (77)
62 2vje_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 78.3 2.6 55 191-264 5-61 (64)
63 4a0k_B E3 ubiquitin-protein li 98.7 2.1E-09 7.1E-14 89.3 0.2 57 193-260 47-112 (117)
64 3knv_A TNF receptor-associated 98.7 4.6E-09 1.6E-13 89.7 2.2 51 190-259 27-77 (141)
65 4ic3_A E3 ubiquitin-protein li 98.6 8.6E-09 2.9E-13 78.2 2.5 47 193-263 23-70 (74)
66 4ap4_A E3 ubiquitin ligase RNF 98.6 8.7E-09 3E-13 85.3 2.4 56 191-259 69-124 (133)
67 2c2l_A CHIP, carboxy terminus 98.6 2.4E-08 8.3E-13 92.6 5.0 67 192-284 206-274 (281)
68 2vje_B MDM4 protein; proto-onc 98.6 1.8E-08 6.1E-13 74.2 2.8 53 192-263 5-59 (63)
69 2y1n_A E3 ubiquitin-protein li 98.6 3E-08 1E-12 97.6 5.0 54 191-263 329-382 (389)
70 2d8s_A Cellular modulator of i 98.5 3.9E-08 1.3E-12 76.1 3.5 54 191-260 12-70 (80)
71 3d2q_A Muscleblind-like protei 98.5 5.6E-08 1.9E-12 73.3 3.1 25 32-56 6-31 (70)
72 2f42_A STIP1 homology and U-bo 98.5 1.4E-07 4.8E-12 83.7 5.5 67 192-284 104-172 (179)
73 2ecg_A Baculoviral IAP repeat- 98.5 6.1E-08 2.1E-12 73.5 2.7 47 193-263 24-71 (75)
74 1wim_A KIAA0161 protein; ring 98.5 4.6E-08 1.6E-12 77.3 2.0 58 192-258 3-62 (94)
75 3hcs_A TNF receptor-associated 98.4 8.3E-08 2.8E-12 83.7 3.5 51 191-260 15-65 (170)
76 2e5s_A Otthump00000018578; ZF- 98.4 5E-08 1.7E-12 78.4 1.5 26 31-56 19-45 (98)
77 2ct0_A Non-SMC element 1 homol 98.4 2.1E-07 7.1E-12 71.1 4.5 54 194-264 15-68 (74)
78 3htk_C E3 SUMO-protein ligase 98.4 3E-07 1E-11 85.9 5.1 70 191-284 178-251 (267)
79 2yho_A E3 ubiquitin-protein li 98.4 1.1E-07 3.8E-12 73.2 1.9 47 193-263 17-64 (79)
80 3d2n_A Muscleblind-like protei 98.2 5.8E-07 2E-11 70.0 3.6 26 31-56 8-34 (83)
81 2ea5_A Cell growth regulator w 98.2 8.2E-07 2.8E-11 66.3 3.7 49 191-263 12-61 (68)
82 2rpp_A Muscleblind-like protei 98.2 8E-07 2.7E-11 70.1 3.5 38 18-56 4-42 (89)
83 3vk6_A E3 ubiquitin-protein li 98.1 1.8E-06 6.3E-11 69.0 3.3 47 197-261 4-50 (101)
84 3t6p_A Baculoviral IAP repeat- 98.0 1.9E-06 6.5E-11 83.8 1.7 48 192-263 293-341 (345)
85 1vyx_A ORF K3, K3RING; zinc-bi 97.9 9.1E-06 3.1E-10 59.3 3.9 53 191-260 3-59 (60)
86 3u9g_A Zinc finger CCCH-type a 97.9 1.5E-05 5.1E-10 72.5 6.0 22 133-155 177-198 (229)
87 3k1l_B Fancl; UBC, ring, RWD, 97.8 4.7E-06 1.6E-10 80.6 2.4 66 193-259 307-372 (381)
88 2bay_A PRE-mRNA splicing facto 97.8 1.2E-05 4.1E-10 58.7 3.0 52 194-264 3-56 (61)
89 3u9g_A Zinc finger CCCH-type a 96.9 0.00037 1.3E-08 63.4 2.6 44 4-57 151-199 (229)
90 2d9m_A Zinc finger CCCH-type d 96.6 0.00068 2.3E-08 50.6 1.7 27 32-58 20-46 (69)
91 2d9m_A Zinc finger CCCH-type d 96.3 0.0024 8.2E-08 47.6 2.9 26 130-155 19-44 (69)
92 3nw0_A Non-structural maintena 96.2 0.0034 1.2E-07 57.8 4.6 55 193-265 179-234 (238)
93 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.0066 2.3E-07 47.7 1.6 35 193-234 2-38 (101)
94 2fc6_A Nuclear, target of EGR1 94.4 0.032 1.1E-06 38.7 3.3 29 129-157 18-47 (50)
95 2fc6_A Nuclear, target of EGR1 94.1 0.014 4.9E-07 40.4 1.1 23 33-55 21-44 (50)
96 3u1l_A PRE-mRNA-splicing facto 93.0 0.025 8.7E-07 52.0 1.0 26 33-58 71-96 (240)
97 3u1l_A PRE-mRNA-splicing facto 92.4 0.025 8.7E-07 52.0 0.2 25 4-28 70-94 (240)
98 2lhn_A Nuclear polyadenylated 89.6 0.056 1.9E-06 41.4 0.0 42 4-54 9-50 (80)
99 2lhn_A Nuclear polyadenylated 82.8 0.27 9.3E-06 37.6 0.0 42 5-56 32-73 (80)
100 1weo_A Cellulose synthase, cat 79.3 2.8 9.7E-05 32.5 4.9 57 192-260 14-70 (93)
101 2ko5_A Ring finger protein Z; 69.3 1.5 5.3E-05 34.4 1.1 44 195-259 29-72 (99)
102 3ql9_A Transcriptional regulat 54.2 12 0.0004 30.9 4.0 51 191-257 54-111 (129)
103 2lri_C Autoimmune regulator; Z 51.2 9.8 0.00033 27.5 2.7 51 192-258 10-60 (66)
104 2jmo_A Parkin; IBR, E3 ligase, 49.5 1.5 5.2E-05 33.0 -2.0 16 220-235 55-70 (80)
105 2ysm_A Myeloid/lymphoid or mix 40.4 6.8 0.00023 30.9 0.4 38 191-234 4-41 (111)
106 1z60_A TFIIH basal transcripti 40.2 14 0.00048 26.3 2.0 43 195-254 16-58 (59)
107 3v33_A Ribonuclease ZC3H12A; r 39.4 6.2 0.00021 35.6 0.0 24 130-155 191-214 (223)
108 3m62_A Ubiquitin conjugation f 34.7 1.2E+02 0.0042 32.9 9.0 69 190-284 887-957 (968)
109 3a1b_A DNA (cytosine-5)-methyl 32.7 28 0.00094 29.8 3.0 68 191-268 76-147 (159)
110 2lbm_A Transcriptional regulat 31.2 50 0.0017 27.5 4.3 51 191-257 60-117 (142)
111 2ct7_A Ring finger protein 31; 29.8 4.1 0.00014 30.9 -2.5 21 217-237 45-65 (86)
112 2l5u_A Chromodomain-helicase-D 23.2 46 0.0016 23.3 2.3 51 191-257 8-58 (61)
113 2o35_A Hypothetical protein DU 23.1 31 0.0011 27.2 1.5 14 224-237 42-55 (105)
114 3fyb_A Protein of unknown func 22.8 32 0.0011 27.1 1.5 14 224-237 41-54 (104)
115 2cs3_A Protein C14ORF4, MY039 21.9 78 0.0027 24.0 3.4 40 192-237 13-53 (93)
116 1vfy_A Phosphatidylinositol-3- 21.5 35 0.0012 24.8 1.4 35 194-233 11-45 (73)
117 2yw8_A RUN and FYVE domain-con 20.4 33 0.0011 25.5 1.1 56 191-256 16-71 (82)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-15 Score=114.69 Aligned_cols=57 Identities=37% Similarity=0.888 Sum_probs=52.7
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCccCCCCCCCC
Q 018772 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (350)
Q Consensus 2 tk~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~ 59 (350)
.|+++|+||++|.|++|++|+|+|++...++++|+||++ |.|. |++|+|.|..++..
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 378999999999999999999999998878889999998 9999 99999999998654
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.50 E-value=3.6e-15 Score=113.85 Aligned_cols=55 Identities=38% Similarity=0.918 Sum_probs=51.3
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCccCC-CCCCCCCCCccCCCCCCC
Q 018772 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSR 58 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~ 58 (350)
++++|+||++|.|++|++|+|+|+++..++++|+||++ |.|.+ ++|+|.|..++.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 78899999999999999999999998888899999999 99999 999999998853
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.29 E-value=1.4e-12 Score=105.25 Aligned_cols=50 Identities=36% Similarity=0.877 Sum_probs=46.3
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCccC-CCCCCCCCCCccCCCCCC
Q 018772 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (350)
|+.+|+||++|.|++|++|+|+|+ ..+|+||+ +|.|.+|++|+|+|....
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 789999999999999999999998 57899995 999999999999999653
No 4
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.24 E-value=8.8e-13 Score=99.94 Aligned_cols=54 Identities=33% Similarity=0.790 Sum_probs=47.1
Q ss_pred CCccccccccccCCCCC-CCCCCCCCC-------CCCCCCCCccCCCCCCCCCCCccCCCCCC
Q 018772 3 KRVLCKFFAHGACLKGE-HCEFSHDWK-------DPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~-------~~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
|..+|++|++|.|++|+ .|+|+|+.. ..++++|++|++|.|.+| +|+|.|..+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCHHH
Confidence 56799999999999999 599999764 345789999999999998 9999998763
No 5
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.24 E-value=2.2e-12 Score=99.03 Aligned_cols=54 Identities=33% Similarity=0.893 Sum_probs=25.0
Q ss_pred CCccccccc-cccCCCCCCCCCCCCCCCC---------CCCCCCccC-CCCCCCCCCCccCCCCC
Q 018772 3 KRVLCKFFA-HGACLKGEHCEFSHDWKDP---------PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 3 k~~~C~~f~-~G~C~~G~~C~f~H~~~~~---------~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (350)
|+.+|++|+ .|.|++|++|+|+|+.... ++.+|++|. .|.|.+|++|+|+|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 789999996 8999999999999998652 256898654 89999999999999865
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=96.59 Aligned_cols=72 Identities=21% Similarity=0.552 Sum_probs=51.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
.++.+|+||++. +.+| .+++.|+|+||..||.+|..... ...||+||..+.. +.. +...
T Consensus 11 ~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~~--~~~--~~~n 69 (92)
T 3ztg_A 11 PDELLCLICKDI-MTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDVS--PDA--LIAN 69 (92)
T ss_dssp CTTTEETTTTEE-CSSC-------EECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSCC--TTS--CEEC
T ss_pred CcCCCCCCCChh-hcCc-------eECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCCC--ccc--cCcC
Confidence 467899999997 5566 57766999999999999987543 2589999998621 111 1223
Q ss_pred hhHHHHHHHHHhh
Q 018772 272 EEKQEIIDSYKSK 284 (350)
Q Consensus 272 ~ek~~li~~yk~~ 284 (350)
..-+.+|+.|+..
T Consensus 70 ~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 70 KFLRQAVNNFKNE 82 (92)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456788888764
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-12 Score=105.73 Aligned_cols=55 Identities=33% Similarity=0.741 Sum_probs=48.6
Q ss_pred CCccccccccccCCCCC-CCCCCCCCCC-------CCCCCCCccCCCCCCCCCCCccCCCCCCC
Q 018772 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (350)
|..+|++|++|.|++|+ .|+|+|+.+. .++++|.+|++|.|.+| +|+|.|..+..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 45799999999999999 8999999753 45779999999999998 99999998754
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.15 E-value=1.8e-11 Score=87.06 Aligned_cols=52 Identities=31% Similarity=0.788 Sum_probs=41.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.++.+|+||++.+.+. ....+++.|+|.||..||.+|...+ .+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-----EEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT-----SCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC-----CceEECCCCCCcccHHHHHHHHHcC-----------CcCcCCCCEeE
Confidence 4568999999986442 2346777899999999999999654 38999998763
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=89.24 Aligned_cols=57 Identities=30% Similarity=0.672 Sum_probs=44.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
...+.+|+||++.+... ....++ .|+|.||..||.+|...+ .+||+||..+...+|.
T Consensus 11 ~~~~~~C~IC~~~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG-----EDVRRL-PCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQLPS 67 (69)
T ss_dssp TTCCCSBTTTTBCCCSS-----SCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCCCC
T ss_pred CCCCCCCeeCCccccCC-----CcEEEe-CCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcCCC
Confidence 44568899999986432 123556 599999999999999865 3799999999877765
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=5e-11 Score=90.93 Aligned_cols=69 Identities=14% Similarity=0.391 Sum_probs=52.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~ 268 (350)
..++..|+||++. +.+| .++ .|+|+||..||.+|..... .+||+||..+.. ++|+.
T Consensus 5 ~~~~~~C~IC~~~-~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~----------~~CP~C~~~~~~~~l~~n~--- 62 (78)
T 1t1h_A 5 FPEYFRCPISLEL-MKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTPNY--- 62 (78)
T ss_dssp CSSSSSCTTTSCC-CSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEECT---
T ss_pred CcccCCCCCcccc-ccCC-------EEc-CCCCeecHHHHHHHHHHCc----------CCCCCCcCCCChhhCccCH---
Confidence 3467899999997 5565 556 5999999999999997422 489999998753 44442
Q ss_pred cCchhHHHHHHHHHhhc
Q 018772 269 YTPEEKQEIIDSYKSKL 285 (350)
Q Consensus 269 ~~~~ek~~li~~yk~~~ 285 (350)
.-+.+|++|++.-
T Consensus 63 ----~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 63 ----VLKSLIALWCESN 75 (78)
T ss_dssp ----TTHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHc
Confidence 3467899998653
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.10 E-value=2.6e-11 Score=90.54 Aligned_cols=58 Identities=33% Similarity=0.720 Sum_probs=42.6
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
...+++.+|+||++.+.+ |...++. .++..|+|+||..||.+|...+ .+||+||..+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~-~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSE-IVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHH-HHTTTCC-EEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhc-cccccCC-eEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 345678899999998543 2111222 3555799999999999999765 38999999876
No 12
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=94.65 Aligned_cols=67 Identities=21% Similarity=0.538 Sum_probs=50.1
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccccC
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~~ 270 (350)
++.+|+||++.+ .+| .++..|+|+||..||.+|...+ ..||+||..+.. +.|+
T Consensus 21 ~~~~C~IC~~~~-~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~l~~n------ 75 (99)
T 2y43_A 21 DLLRCGICFEYF-NIA-------MIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTEPDLKNN------ 75 (99)
T ss_dssp HHTBCTTTCSBC-SSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEEC------
T ss_pred CCCCcccCChhh-CCc-------CEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCChhhCCcC------
Confidence 467899999974 444 4565799999999999999753 489999998764 3333
Q ss_pred chhHHHHHHHHHhhc
Q 018772 271 PEEKQEIIDSYKSKL 285 (350)
Q Consensus 271 ~~ek~~li~~yk~~~ 285 (350)
..-+.+|+.|++.-
T Consensus 76 -~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 76 -RILDELVKSLNFAR 89 (99)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 33567888887544
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.09 E-value=4.4e-11 Score=90.74 Aligned_cols=50 Identities=26% Similarity=0.678 Sum_probs=40.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
.++.+|+||++. +.+| .+++.|+|+||..||.+|...+. ...||+||..+
T Consensus 13 ~~~~~C~IC~~~-~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDI-MTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCC-CTTC-------EECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred CCCCCCcCCChH-HhCC-------eEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence 456899999997 5555 56766999999999999998653 25899999964
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.5e-11 Score=89.59 Aligned_cols=50 Identities=32% Similarity=0.623 Sum_probs=40.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.++.+|+||++.+ .+| .++..|+|+||..||.+|...+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~-~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYL-IDA-------TTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCC-SSC-------EECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred CCCCCCCCCChHH-HCc-------CEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence 4568999999974 445 5666799999999999999764 489999998764
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=89.09 Aligned_cols=55 Identities=31% Similarity=0.697 Sum_probs=40.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.++.+|+||++.+.+ +....+.+.++ .|+|+||..||.+|...+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSE-IVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHH-HTTTTCCEEEC-SSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCcccCccccc-cccccCCeEeC-CCCChhcHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 467899999998543 32122333444 699999999999999764 48999999764
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-11 Score=90.77 Aligned_cols=64 Identities=20% Similarity=0.504 Sum_probs=46.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccC
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~ 270 (350)
...+.+|+||++.+ .+| .++ .|+|+||..||.+|.... ..||+||..+..+++.
T Consensus 12 ~~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~------ 65 (81)
T 2csy_A 12 EEIPFRCFICRQAF-QNP-------VVT-KCRHYFCESCALEHFRAT-----------PRCYICDQPTGGIFNP------ 65 (81)
T ss_dssp CCCCSBCSSSCSBC-CSE-------EEC-TTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCCSCCEE------
T ss_pred CCCCCCCcCCCchh-cCe-------eEc-cCCCHhHHHHHHHHHHCC-----------CcCCCcCccccccCCc------
Confidence 34568999999985 444 344 699999999999999753 4899999998632221
Q ss_pred chhHHHHHHHHHh
Q 018772 271 PEEKQEIIDSYKS 283 (350)
Q Consensus 271 ~~ek~~li~~yk~ 283 (350)
...|++.+++
T Consensus 66 ---~~~l~~~~~~ 75 (81)
T 2csy_A 66 ---AKELMAKLQK 75 (81)
T ss_dssp ---CHHHHHHHSS
T ss_pred ---HHHHHHHHHh
Confidence 1456776654
No 17
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=91.90 Aligned_cols=57 Identities=23% Similarity=0.595 Sum_probs=41.7
Q ss_pred cCccccccccccccC------CcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 193 QEIECSVCLDRVLSK------PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k------~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
++.+|+||++.+.+. +...+....+++.|+|.||..||.+|...+ .+||+||..+.+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence 567899999986431 000123345676899999999999999765 389999998764
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=3.8e-11 Score=87.60 Aligned_cols=54 Identities=30% Similarity=0.696 Sum_probs=40.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
++.+|+||++.+. ++..+.+...++ .|+|+||..||.+|...+ .+||+||..+.
T Consensus 2 ~~~~C~IC~~~~~-~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYS-EIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHH-HHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCT
T ss_pred CCCCCCccChhhh-CccccCCCEEeC-CCCCchhHHHHHHHHHcC-----------CCCCCCCccCC
Confidence 5689999999853 332122333444 699999999999999864 48999999875
No 19
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.5e-11 Score=88.71 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=42.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
...+.+|+||++.+.+ + ....+|+ |+|.||..||.+|...+ .+||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~-~----~~~~~~~-C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP-R----DELGICP-CKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCS-S----SCEEEET-TTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCC-C----CcEEEcC-CCCEecHHHHHHHHHcC-----------CcCCCcCcccccc
Confidence 3457899999998543 2 2345665 99999999999999765 3899999987653
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.06 E-value=1.6e-10 Score=92.80 Aligned_cols=51 Identities=27% Similarity=0.781 Sum_probs=41.0
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++.+ .+| .++..|+|+||..||.+|..... ..||+||..+.
T Consensus 19 l~~~~~C~IC~~~~-~~p-------~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKL-RDA-------RLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBC-SSE-------EECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCccCCccc-cCc-------cccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCC
Confidence 34578999999984 444 45357999999999999998753 48999999875
No 21
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.06 E-value=1.1e-10 Score=94.79 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=42.0
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
..++.+|+||++.+ .+| .++..|+|+||..||.+|.... ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~-~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYF-IDA-------TTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBC-SSE-------EEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHH-hCc-------CEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCcccccc
Confidence 34678999999974 445 5665799999999999999754 4899999998753
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.05 E-value=1.1e-10 Score=82.94 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
+.+.+|+||++.+.+. +....++ .|+|+||..||.+|.... .+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS----RVVAHVL-PCGHLLHRTCYEEMLKEG-----------YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTT----TSCEEEC-TTSCEEETTHHHHHHHHT-----------CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCC----CcCeEec-CCCCcccHHHHHHHHHcC-----------CcCCCCCCcC
Confidence 4578899999986442 2233555 599999999999999865 3899999875
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.04 E-value=1.1e-10 Score=99.01 Aligned_cols=50 Identities=34% Similarity=0.804 Sum_probs=39.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceee
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
++.+|+||++.+ .+| .++ .|+|+||..||.+|...+ .+||+||.++....
T Consensus 52 ~~~~C~iC~~~~-~~~-------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYF-IEA-------VTL-NCAHSFCSYCINEWMKRK-----------IECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBC-SSE-------EEE-TTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCEE
T ss_pred ccCCCcccCccc-CCc-------eEC-CCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCCC
Confidence 457899999974 444 556 599999999999999754 48999999886443
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.2e-10 Score=85.84 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=39.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
++.+|+||++.++.+| ...+.++ .|+|+||..||.+|..... ..||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~---~~~~~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGA----------GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCS---SCCEEEC-TTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCC---ccCeecC-CCCCHhHHHHHHHHHHcCC----------CcCCCCCCccc
Confidence 4678999999335554 1233344 6999999999999975432 48999999875
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=1.3e-10 Score=86.13 Aligned_cols=54 Identities=26% Similarity=0.709 Sum_probs=42.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
..+.+|+||++.+. .+ .++..|+|.||..||.+|...+ .+||+||..+..++..
T Consensus 3 ~~~~~C~IC~~~~~-~~-------~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPS-NY-------SMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCC-SC-------EEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCcccc-CC-------cEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhc
Confidence 35678999999854 33 2344699999999999999754 3899999998876655
No 26
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.02 E-value=6.3e-11 Score=92.64 Aligned_cols=54 Identities=31% Similarity=0.653 Sum_probs=47.3
Q ss_pred CCccccccccccCCCCC-CCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCccCCCCCC
Q 018772 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
+..+|++|++|.|.+|+ .|+|+|+... ...++|.+|++|.|..+ .|+|.|....
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChHH
Confidence 45789999999999997 9999999753 34689999999999987 9999999764
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=2.6e-10 Score=94.80 Aligned_cols=70 Identities=17% Similarity=0.350 Sum_probs=48.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
.++.+|+||++. +.+| .++ .|+|+||..||..|..... ..||+||..+... . -+...
T Consensus 50 ~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~--~~~~n 106 (124)
T 3fl2_A 50 EETFQCICCQEL-VFRP-------ITT-VCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGRS--Y--AMQVN 106 (124)
T ss_dssp HHHTBCTTTSSB-CSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT--C--CCCCC
T ss_pred ccCCCCCcCChH-HcCc-------EEe-eCCCcccHHHHHHHHhHCc----------CCCCCCCccCCCC--C--CCCCC
Confidence 456889999997 4455 455 6999999999999997432 4899999987530 1 12223
Q ss_pred hhHHHHHHHHHhh
Q 018772 272 EEKQEIIDSYKSK 284 (350)
Q Consensus 272 ~ek~~li~~yk~~ 284 (350)
..-..+|+.|...
T Consensus 107 ~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 107 QPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccc
Confidence 3456677776543
No 28
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.99 E-value=2.2e-10 Score=93.57 Aligned_cols=65 Identities=18% Similarity=0.508 Sum_probs=44.1
Q ss_pred hcccCccccccccccccCCc----------ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 190 RRSQEIECSVCLDRVLSKPT----------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~----------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
....+.+|+|||+.+.+ +. ......+.+..|+|+||..||.+|...... ....+||+||..+.
T Consensus 21 ~~~~~~~C~ICl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAV-ASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCSCEETTTTEETTS-CCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------SSCCBCTTTCCBSS
T ss_pred cCCCCCcCccCChhhcC-cccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------CCCCcCCCCCCccC
Confidence 34466799999998543 21 011233446679999999999999964321 12359999999886
Q ss_pred ee
Q 018772 260 FV 261 (350)
Q Consensus 260 ~v 261 (350)
..
T Consensus 94 ~~ 95 (114)
T 1v87_A 94 EK 95 (114)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=87.93 Aligned_cols=51 Identities=35% Similarity=0.810 Sum_probs=40.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.++.+|+|||+.+.+ + ..+.+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~-~----~~~~~l~-C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES-R----QLLRVLP-CNHEFHAKCVDKWLKAN-----------RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCB-T----CEEEEET-TTEEEETTHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCC-C----CeEEEEC-CCCHhHHHHHHHHHHcC-----------CcCcCcCCcCC
Confidence 456889999998543 2 2446675 99999999999999765 38999998753
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=86.96 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=39.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++.+ .+| .++ .|+|+||..||.+|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~-~~~-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTC-VHP-------VSL-PCKHVFCYLCVKGASWLG-----------KRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBC-SSE-------EEE-TTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCC
T ss_pred CCCCCCCccCCccc-CCC-------EEc-cCCCHHHHHHHHHHHHCC-----------CcCcCcCchhC
Confidence 44678999999984 443 456 599999999999999643 48999999875
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.98 E-value=2.2e-10 Score=90.44 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=40.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..+.+|+|||+.+.+. ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG-----DVATELP-CHHYFHKPCVSIWLQKS-----------GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT-----CEEEEET-TTEEEEHHHHHHHHTTT-----------CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC-----CcEEecC-CCChHHHHHHHHHHHcC-----------CcCcCcCccCC
Confidence 3567899999986542 2346676 99999999999999654 38999998763
No 32
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=85.12 Aligned_cols=52 Identities=35% Similarity=0.863 Sum_probs=40.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++. +.+| .++ .|+|+||..||.+|..... ....||+||+.+.
T Consensus 17 ~~~~~~C~IC~~~-~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDI-LQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSB-CSSE-------EEC-TTCCEEEHHHHHHHCSSSC--------SCCCCSSSCCCCC
T ss_pred CccCCEeccCCcc-cCCe-------EEc-CCCChhhHHHHHHHHHcCC--------CCCCCCCCCCcCC
Confidence 3467899999997 4444 455 6999999999999997321 1358999999865
No 33
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=83.71 Aligned_cols=50 Identities=30% Similarity=0.612 Sum_probs=38.9
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++.+ .+| .++ .|+|+||..||.+|.... ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL-CSP-------KQT-ECGHRFCESCMAALLSSS----------SPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEE-SSC-------CCC-SSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHh-cCe-------eEC-CCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCC
Confidence 34578999999984 444 334 699999999999999632 248999999864
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=5.3e-10 Score=90.66 Aligned_cols=77 Identities=25% Similarity=0.509 Sum_probs=50.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccccC
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~~ 270 (350)
++.+|+||++. +..| .++ .|+|+||..||.+|...+.. ...||+||..+.. +.++...-..
T Consensus 20 ~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~~l~~~ 82 (112)
T 1jm7_A 20 KILECPICLEL-IKEP-------VST-KCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDITKRSLQESTRFSQL 82 (112)
T ss_dssp HHTSCSSSCCC-CSSC-------CBC-TTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCCTTTCBCCCSSSHH
T ss_pred CCCCCcccChh-hcCe-------EEC-CCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCCHhhcCccHHHHHH
Confidence 46789999997 4454 345 69999999999999986421 2589999998763 3343221111
Q ss_pred chhHHHHHHHHHhhcC
Q 018772 271 PEEKQEIIDSYKSKLK 286 (350)
Q Consensus 271 ~~ek~~li~~yk~~~~ 286 (350)
-++-.++++.|...++
T Consensus 83 ~~~~~~~~~~~~~~~~ 98 (112)
T 1jm7_A 83 VEELLKIICAFQLDTG 98 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCcc
Confidence 2333445555555553
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.95 E-value=3.3e-10 Score=86.32 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=40.6
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
...+.+|+||++.+.+ + ....+| .|+|+||..||.+|...+ .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-~----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYAL-G----ESVRQL-PCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCT-T----SCEEEC-TTSCEEETTTTHHHHTTT-----------CSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccC-C----CCEEEe-CCCCeecHHHHHHHHHcC-----------CcCcCcCCccCC
Confidence 3457899999998543 2 233456 499999999999999643 489999998764
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.8e-10 Score=86.46 Aligned_cols=56 Identities=27% Similarity=0.683 Sum_probs=41.9
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++.+.+. ++...+| .|+|+||..||.+|...+. ....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEE----QLRPKLL-HCGHTICRQCLEKLLASSI--------NGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTT----SSCEEEC-SSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBC
T ss_pred ccCCCCCccCCcccccc----CCCeEEC-CCCChhhHHHHHHHHHcCC--------CCcCCCCCCCccc
Confidence 34578999999985432 2223566 5999999999999998752 1359999999865
No 37
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.93 E-value=1.2e-09 Score=88.01 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=30.0
Q ss_pred CCCCCCCC-CCCCCCCccCCCCCCCCCCCccCCC
Q 018772 22 EFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHV 54 (350)
Q Consensus 22 ~f~H~~~~-~~~~~C~~f~~G~C~~G~~C~y~H~ 54 (350)
.|+|+... .++.+|+||++|.|.+|++|+|+|.
T Consensus 2 ~~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCcccccCcCCCCCCCCCCCC
Confidence 37999876 5788999999999999999999998
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.91 E-value=3.1e-10 Score=86.32 Aligned_cols=56 Identities=30% Similarity=0.698 Sum_probs=41.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..++.+|+||++. +.+| .+| .|+|+||..||.+|....... ......||+||..+.
T Consensus 9 ~~~~~~C~IC~~~-~~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~~----~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLEL-LTEP-------LSL-DCGHSLCRACITVSNKEAVTS----MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEE-CSSC-------CCC-SSSCCCCHHHHSCCCCCCSSS----CCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcc-cCCe-------eEC-CCCCHHHHHHHHHHHHhcccC----CCCCCcCCCCCCcCC
Confidence 3467899999997 4555 345 599999999999999764210 122469999999875
No 39
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.90 E-value=8.6e-10 Score=89.99 Aligned_cols=57 Identities=21% Similarity=0.552 Sum_probs=40.0
Q ss_pred cCccccccccccccCC---------cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 193 QEIECSVCLDRVLSKP---------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~---------~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
++.+|+||++.+.+.- .+++.--.++..|+|.||..||.+|...+ .+||+||..+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-----------CcCcCCCCccee
Confidence 5678999999865420 01111123344699999999999999764 389999998754
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=80.24 Aligned_cols=47 Identities=38% Similarity=0.969 Sum_probs=36.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
..++.+|+||++. +.+| .++ .|+|+||..||.+|..... ....||+|
T Consensus 17 ~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDI-LQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSB-CSSC-------EEC-TTSSEECHHHHHHHHHHCS--------SCCCCSCC
T ss_pred CccCCCCCcCCch-hCCe-------EEe-CCCCcchHHHHHHHHHcCC--------CCCcCcCC
Confidence 3467899999997 4455 556 6999999999999998532 13589998
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=1.7e-09 Score=84.48 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=51.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~ 269 (350)
.++..|+||++. +.+| .+++ |||+||..||.+|.... .+||+||.++.. ++|+
T Consensus 12 p~~~~CpI~~~~-m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~l~pn----- 66 (85)
T 2kr4_A 12 PDEFRDPLMDTL-MTDP-------VRLP-SGTVMDRSIILRHLLNS-----------PTDPFNRQMLTESMLEPV----- 66 (85)
T ss_dssp CTTTBCTTTCSB-CSSE-------EECT-TSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC-----
T ss_pred chheECcccCch-hcCC-------eECC-CCCEECHHHHHHHHhcC-----------CCCCCCcCCCChHhcchH-----
Confidence 457899999996 7777 6776 99999999999999753 489999998753 4443
Q ss_pred CchhHHHHHHHHHhh
Q 018772 270 TPEEKQEIIDSYKSK 284 (350)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (350)
..-..+|+.|++.
T Consensus 67 --~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 67 --PELKEQIQAWMRE 79 (85)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3456788888654
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=4.2e-10 Score=92.19 Aligned_cols=49 Identities=29% Similarity=0.795 Sum_probs=39.7
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
++.+|+||++. +.+| .+| .|+|+||..||.+|..... ..||+||..+..
T Consensus 14 ~~~~C~iC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEI-LVEP-------VTL-PCNHTLCKPCFQSTVEKAS----------LCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSB-CSSC-------EEC-TTSCEECHHHHCCCCCTTT----------SBCTTTCCBCHH
T ss_pred CCCCCccCCcc-cCce-------eEc-CCCCHHhHHHHHHHHhHCc----------CCCCCCCcccCc
Confidence 46789999997 4455 566 6999999999999996432 589999999864
No 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=1.3e-09 Score=83.50 Aligned_cols=54 Identities=31% Similarity=0.756 Sum_probs=41.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.++.+|+||++. +.+| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 17 ~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLEL-LKEP-------VSA-DCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSC-CSSC-------EEC-TTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChh-hCcc-------eeC-CCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCC
Confidence 357899999998 4444 355 59999999999999987421 112369999999876
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=93.70 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=50.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
.++..|+||++. +.+| .++ .|+|+||..||.+|..... ..||+||..+..- .. +...
T Consensus 76 ~~~~~C~IC~~~-~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~~-l~~n 132 (150)
T 1z6u_A 76 EQSFMCVCCQEL-VYQP-------VTT-ECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN---YI-MIPN 132 (150)
T ss_dssp HHHTBCTTTSSB-CSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT---CC-CCBC
T ss_pred ccCCEeecCChh-hcCC-------EEc-CCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC---CC-CCCC
Confidence 356899999997 4455 455 6999999999999997542 4899999987632 01 1223
Q ss_pred hhHHHHHHHHHhhc
Q 018772 272 EEKQEIIDSYKSKL 285 (350)
Q Consensus 272 ~ek~~li~~yk~~~ 285 (350)
..-+.||+.|....
T Consensus 133 ~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 133 EILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHhhHh
Confidence 34567888876544
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=1.2e-09 Score=95.17 Aligned_cols=69 Identities=28% Similarity=0.515 Sum_probs=47.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCch
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~~ 272 (350)
++.+|+||++.+ .+| .++..|+|+||..||.+|..... ..||+||..+... . -+....
T Consensus 53 ~~~~C~IC~~~~-~~p-------~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~--~l~~~~ 110 (165)
T 2ckl_B 53 SELMCPICLDML-KNT-------MTTKECLHRFCADCIITALRSGN----------KECPTCRKKLVSK--R--SLRPDP 110 (165)
T ss_dssp HHHBCTTTSSBC-SSE-------EEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCCSG--G--GEEECH
T ss_pred CCCCCcccChHh-hCc-------CEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCCCc--c--cCCcCH
Confidence 457899999984 444 45657999999999999997532 4899999987420 0 012223
Q ss_pred hHHHHHHHHHh
Q 018772 273 EKQEIIDSYKS 283 (350)
Q Consensus 273 ek~~li~~yk~ 283 (350)
.-+.||+.++.
T Consensus 111 ~l~~~i~~~~~ 121 (165)
T 2ckl_B 111 NFDALISKIYP 121 (165)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHc
Confidence 34567777654
No 46
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.85 E-value=3.6e-10 Score=89.41 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=47.0
Q ss_pred CccccccccccCCCCC-CCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCccCCCCCC
Q 018772 4 RVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
..+|++|++|.|.+|+ .|+|+|+... .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5699999999999998 9999998763 35789999999999986 9999999764
No 47
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=85.05 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=54.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--Cccc---cceeecCcc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL---SYFVIPSVI 266 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~---~~~v~ps~~ 266 (350)
.++..|+||++. +.+| .+++.|+|+||..||.+|...... .+...+||+ |+.. ...++|+.
T Consensus 5 ~~~~~CPI~~~~-~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~pn~- 70 (94)
T 2yu4_A 5 SSGFTCPITKEE-MKKP-------VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLIQDE- 70 (94)
T ss_dssp SSCCBCTTTCSB-CSSE-------EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEEECH-
T ss_pred CcEeECcCcCch-hcCC-------EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCcCCH-
Confidence 357899999996 6677 677679999999999999976410 011358999 9954 44566653
Q ss_pred cccCchhHHHHHHHHHhhcC
Q 018772 267 WYYTPEEKQEIIDSYKSKLK 286 (350)
Q Consensus 267 w~~~~~ek~~li~~yk~~~~ 286 (350)
.-..+|+.|++...
T Consensus 71 ------~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 71 ------ALRRAIENHNKKRH 84 (94)
T ss_dssp ------HHHHHHHHHHTTCC
T ss_pred ------HHHHHHHHHHHHhc
Confidence 35688999986654
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.8e-10 Score=83.61 Aligned_cols=49 Identities=39% Similarity=0.901 Sum_probs=39.0
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++.+|+||++.+.+ .++ .|+|.||..||.+|.... .+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---------LIL-PCAHSFCQKCIDKWSDRH-----------RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS---------EEE-TTTEEECHHHHHHSSCCC-----------SSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC---------ccc-CCCCcccHHHHHHHHHCc-----------CcCCCcCCcccC
Confidence 3457899999997432 455 599999999999999733 489999998764
No 49
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=83.08 Aligned_cols=54 Identities=30% Similarity=0.794 Sum_probs=40.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.++.+|+||++.+ .+| .++ .|+|+||..||.+|...... ......||+||..+.
T Consensus 17 ~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELL-TQP-------LSL-DCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCC-SSC-------BCC-SSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCccc-CCc-------eeC-CCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccC
Confidence 4578999999984 444 345 69999999999999876210 011358999999886
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=9.8e-10 Score=91.07 Aligned_cols=56 Identities=30% Similarity=0.704 Sum_probs=41.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+++.+|+||++.+. +|..+++. .++..|+|+||.+||.+|...+ .+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~-~~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYS-EIVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHH-HHHHTTCC-EEEETTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhh-CccccccC-eEecCCCChhhHHHHHHHHHhC-----------CCCCCCCCcCcc
Confidence 46789999999843 33111222 3444699999999999999754 399999998863
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=2.1e-09 Score=82.82 Aligned_cols=55 Identities=24% Similarity=0.546 Sum_probs=39.9
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++.+|+||||.+..+ +..|.-+ .|+|.||..||.+|+... ...||+||.++..
T Consensus 8 ~~~~~~CpICle~~~~~----d~~~~p~-~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEID----DINFFPC-TCGYQICRFCWHRIRTDE----------NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTT----TTTCCSS-TTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccc----ccccccc-CCCCCcCHHHHHHHHhcC----------CCCCCCCCCccCC
Confidence 34678999999975322 1233333 499999999999987532 2589999998863
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=2.7e-09 Score=87.80 Aligned_cols=66 Identities=23% Similarity=0.622 Sum_probs=47.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
.++.+|+||++. +.+| .++..|+|+||..||..|.. ..||+||..+.. +. +...
T Consensus 20 ~~~~~C~IC~~~-~~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~--~~---~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNI-LREP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI--QD---LKIN 73 (117)
T ss_dssp HHTTSCSSSCSC-CSSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC--SS---CCCC
T ss_pred hhCCCCCCCChH-hhCc-------cEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCcc--cc---cccc
Confidence 457899999997 5555 56647999999999999985 289999999743 11 1222
Q ss_pred hhHHHHHHHHHh
Q 018772 272 EEKQEIIDSYKS 283 (350)
Q Consensus 272 ~ek~~li~~yk~ 283 (350)
..-..||+.|+.
T Consensus 74 ~~l~~l~~~~~~ 85 (117)
T 1jm7_B 74 RQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334566666654
No 53
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=76.21 Aligned_cols=47 Identities=38% Similarity=0.966 Sum_probs=35.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
..++.+|+||++.+ .+| .++ .|+|+||..||.+|..... ...+||+|
T Consensus 12 ~~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL-KEP-------VII-ECGHNFCKACITRWWEDLE--------RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC-SSC-------CCC-SSCCCCCHHHHHHHTTSSC--------CSCCCSCC
T ss_pred cccCCCCccCCccc-Ccc-------EeC-CCCCccCHHHHHHHHHhcC--------CCCCCCCC
Confidence 34578999999984 444 345 5999999999999976421 13589998
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=3.9e-09 Score=85.07 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=52.3
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccccC
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~~ 270 (350)
++..|+||++. +.+| .+++ |+|+||..||.+|.... .+||+||.++.. ++|+
T Consensus 28 ~~~~CpI~~~~-m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~~L~pn------ 81 (100)
T 2kre_A 28 DEFRDPLMDTL-MTDP-------VRLP-SGTIMDRSIILRHLLNS-----------PTDPFNRQTLTESMLEPV------ 81 (100)
T ss_dssp TTTBCTTTCSB-CSSE-------EEET-TTEEEEHHHHHHHTTSC-----------SBCSSSCCBCCTTSSEEC------
T ss_pred HhhCCcCccCc-ccCC-------eECC-CCCEEchHHHHHHHHcC-----------CCCCCCCCCCChhhceEC------
Confidence 57899999996 7777 6776 99999999999999742 489999998753 3343
Q ss_pred chhHHHHHHHHHhhcC
Q 018772 271 PEEKQEIIDSYKSKLK 286 (350)
Q Consensus 271 ~~ek~~li~~yk~~~~ 286 (350)
..-..+|+.|++.-.
T Consensus 82 -~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 82 -PELKEQIQAWMREKQ 96 (100)
T ss_dssp -HHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHHHHhh
Confidence 345688999986543
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.80 E-value=1.9e-09 Score=88.93 Aligned_cols=51 Identities=24% Similarity=0.558 Sum_probs=40.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++..|+||++.+ .+| .++ .|+|+||..||.+|..... .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~-~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMAL-REA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBC-SSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhh-cCe-------EEC-CcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCH
Confidence 34568999999974 444 445 6999999999999998653 389999998753
No 56
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.80 E-value=1.8e-09 Score=82.59 Aligned_cols=28 Identities=29% Similarity=0.812 Sum_probs=24.7
Q ss_pred CCCCCCCccC-CCCCCCCCCCccCCCCCC
Q 018772 30 PPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 30 ~~~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (350)
.++.+|++|+ .|.|.+|++|+|+|....
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 4578999996 899999999999999763
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.79 E-value=4.7e-09 Score=84.29 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=51.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCC-CcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWY 268 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~-H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~ 268 (350)
.++..|+||++. +.+| .+++ |+ |+||..||.+|.... .+||+||.++.. ++|+
T Consensus 20 p~~~~CpI~~~~-m~dP-------V~~~-cG~htf~r~cI~~~l~~~-----------~~cP~~~~~l~~~~L~pn---- 75 (98)
T 1wgm_A 20 CDEFLDPIMSTL-MCDP-------VVLP-SSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTMDQIRPN---- 75 (98)
T ss_dssp CTTTBCTTTCSB-CSSE-------EECT-TTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCTTTSEEC----
T ss_pred cHhcCCcCcccc-ccCC-------eECC-CCCeEECHHHHHHHHHhC-----------CCCCCCCCCCChhhceEc----
Confidence 357899999996 7777 5664 88 999999999999752 389999998753 3333
Q ss_pred cCchhHHHHHHHHHhhc
Q 018772 269 YTPEEKQEIIDSYKSKL 285 (350)
Q Consensus 269 ~~~~ek~~li~~yk~~~ 285 (350)
..-..+|+.|++.-
T Consensus 76 ---~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 76 ---TELKEKIQRWLAER 89 (98)
T ss_dssp ---HHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHc
Confidence 34567899987654
No 58
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.77 E-value=2.9e-09 Score=80.98 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.4
Q ss_pred CCCCCCCccCCCCCCCCCCCccCCCCC
Q 018772 30 PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
.+..+|+||++|.|.+|++|+|+|...
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 567899999999999999999999854
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.76 E-value=5e-09 Score=85.87 Aligned_cols=48 Identities=31% Similarity=0.707 Sum_probs=38.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
++..|+||++. +.+| .++ .|+|+||..||.+|..... .+||+||..+.
T Consensus 22 ~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHI-LADP-------VET-SCKHLFCRICILRCLKVMG----------SYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcH-hcCc-------EEc-CCCCcccHHHHHHHHhHCc----------CcCCCCCCCCC
Confidence 35789999997 4444 344 6999999999999998642 48999999875
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.1e-09 Score=78.80 Aligned_cols=47 Identities=30% Similarity=0.665 Sum_probs=37.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++.+|+||++. +.+| .+|+ |+|+||..||.+|. ..||+||..+..
T Consensus 3 e~~~~~C~IC~~~-~~~p-------~~l~-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAE-AKCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSS-CBCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSSC
T ss_pred cccCCCceEeCCc-cCCe-------EEcC-CCCcccHHHHccCC--------------CCCCcCCcEeec
Confidence 3467899999997 4555 5665 99999999998841 489999998753
No 61
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5e-09 Score=80.59 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.6
Q ss_pred CCCCCCCccCCCCCCCCCCCccCCCCC
Q 018772 30 PPNNICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
.+..+|+||++|.|.+|++|+|+|...
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CcceeCHhHccCcCCCCCCCCCccccc
Confidence 457899999999999999999999865
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=3.6e-09 Score=78.26 Aligned_cols=55 Identities=18% Similarity=0.586 Sum_probs=41.6
Q ss_pred cccCccccccccccccCCcccccceeec-CCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil-~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
..++.+|.|||+...+ + .++ ..|+|. ||.+|+.+|...+ ..||+||.++..+++.
T Consensus 5 ~~~~~~C~IC~~~~~~-~-------~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN-G-------CIVHGKTGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVLT 61 (64)
T ss_dssp CGGGSCCTTTSSSCSC-E-------EEEETTEEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEEE
T ss_pred CCCcCCCCcCCCCCCC-E-------EEECCCCCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEee
Confidence 4567899999997332 1 333 159999 8999999999643 4899999999876653
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.69 E-value=2.1e-09 Score=89.26 Aligned_cols=57 Identities=21% Similarity=0.545 Sum_probs=0.9
Q ss_pred cCccccccccccccCCc---------ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 193 QEIECSVCLDRVLSKPT---------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~---------~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.+.+|+||++.+.+.-. +++.--.++..|+|.||..||.+|...+ .+||+||..+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 112 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCeeee
Confidence 35689999998654200 0112223445799999999999999764 389999998654
No 64
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.68 E-value=4.6e-09 Score=89.74 Aligned_cols=51 Identities=27% Similarity=0.655 Sum_probs=39.7
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
...++.+|+||++. +.+| ..+ .|+|+||..||.+|..... ..||+||.+..
T Consensus 27 ~l~~~~~C~IC~~~-~~~p-------v~~-~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNV-LRRP-------FQA-QCGHRYCSFCLASILSSGP----------QNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHGGGSC----------EECHHHHHTTC
T ss_pred cCCcCcCCCCCChh-hcCc-------EEC-CCCCccCHHHHHHHHhcCC----------CCCCCCCCccc
Confidence 34567899999997 4444 344 7999999999999997542 48999999753
No 65
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=8.6e-09 Score=78.23 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=37.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
++.+|.||++.+. .+ .++ .|+|. ||..||.+| . .||+||..+..++.
T Consensus 23 ~~~~C~iC~~~~~-~~-------~~~-pCgH~~~C~~C~~~~---~------------~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AI-------VFV-PCGHLVTCKQCAEAV---D------------KCPMCYTVITFKQK 70 (74)
T ss_dssp HHTBCTTTSSSBC-CE-------EEE-TTCCBCCCHHHHTTC---S------------BCTTTCCBCSEEEE
T ss_pred cCCCCCCCCCCCC-CE-------EEc-CCCChhHHHHhhhcC---c------------cCCCcCcCccCcEE
Confidence 5678999999743 33 455 59999 999999999 1 89999999887654
No 66
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=8.7e-09 Score=85.25 Aligned_cols=56 Identities=30% Similarity=0.699 Sum_probs=41.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
...+.+|+||++.+. ++....+. .++..|+|+||..||.+|...+ ++||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~-~~~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYS-EIVQNGRL-IVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHH-HHHHTTCC-EEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccc-cccccCcc-eEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCC
Confidence 346789999999854 33222222 3445799999999999999765 49999999875
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=2.4e-08 Score=92.62 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=51.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc--eeecCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIWYY 269 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~v~ps~~w~~ 269 (350)
..+..|+||++. +.+| .+++ |+|+||..||..|..... .+||+||.++. -++|+
T Consensus 206 ~~~~~c~i~~~~-~~dP-------v~~~-~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~~~l~~n----- 261 (281)
T 2c2l_A 206 PDYLCGKISFEL-MREP-------CITP-SGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQEQLIPN----- 261 (281)
T ss_dssp CSTTBCTTTCSB-CSSE-------EECS-SCCEEETTHHHHHHHHTC----------SSCTTTCCCCCGGGCEEC-----
T ss_pred CcccCCcCcCCH-hcCC-------eECC-CCCEECHHHHHHHHHHCC----------CCCcCCCCCCchhcCccc-----
Confidence 357899999996 6677 6665 999999999999997643 25999999875 24444
Q ss_pred CchhHHHHHHHHHhh
Q 018772 270 TPEEKQEIIDSYKSK 284 (350)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (350)
..-..+|+.|...
T Consensus 262 --~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 262 --LAMKEVIDAFISE 274 (281)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHH
Confidence 3456889988754
No 68
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.59 E-value=1.8e-08 Score=74.23 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=40.0
Q ss_pred ccCccccccccccccCCcccccceeec-CCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLL-SECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil-~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
+.+.+|.|||+...+ + .++ ..|+|. ||..|+.+|.... ..||+||.++..++.
T Consensus 5 ~~~~~C~IC~~~~~~-~-------~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD-G-------NIIHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGSBCTTTSSSBSC-E-------EEEETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEE
T ss_pred CcCCCCcccCCcCCC-e-------EEEecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEE
Confidence 456789999997322 1 222 359998 9999999998643 489999999887664
No 69
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=3e-08 Score=97.64 Aligned_cols=54 Identities=28% Similarity=0.649 Sum_probs=41.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
.+.+.+|+||++.+ .+| .++ .|+|.||..||..|..... .+||+||..+.....
T Consensus 329 ~~~~~~C~ICle~~-~~p-------v~l-pCGH~FC~~Ci~~wl~~~~----------~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 329 GSTFQLCKICAEND-KDV-------KIE-PCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKGTEP 382 (389)
T ss_dssp TTSSSBCTTTSSSB-CCE-------EEE-TTCCEECHHHHHHHHHHTC----------SBCTTTCCBCCEEEE
T ss_pred cCCCCCCCccCcCC-CCe-------EEe-CCCChhhHHHHHHHHhcCC----------CCCCCCCCccCCcee
Confidence 34558999999984 333 445 6999999999999997432 489999999876443
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-08 Score=76.13 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=40.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCC-----CcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.+++.+|.||++.+.+. .. -+++ |+ |.|+.+||.+|...+. ..+||+||..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~-----~~-l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDE-----SP-LITP-CHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSS-----SC-EECS-SSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCC-----Ce-eEec-cccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence 34567899999974321 22 2554 86 9999999999998753 2599999998864
No 71
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.49 E-value=5.6e-08 Score=73.34 Aligned_cols=25 Identities=36% Similarity=0.903 Sum_probs=22.7
Q ss_pred CCCCCccCCCCCCCCC-CCccCCCCC
Q 018772 32 NNICTYYQKGFCSYGS-RCRYEHVKP 56 (350)
Q Consensus 32 ~~~C~~f~~G~C~~G~-~C~y~H~~~ 56 (350)
..+|++|++|.|.+|+ .|+|+|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 5699999999999999 599999875
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.46 E-value=1.4e-07 Score=83.75 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=51.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~ 269 (350)
..+..|+||++. +.+| .++ .|||+||..||..|..... .+||+||.++.. ++|+
T Consensus 104 p~~f~CPI~~el-m~DP-------V~~-~~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~~~L~pN----- 159 (179)
T 2f42_A 104 PDYLCGKISFEL-MREP-------CIT-PSGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQDQLIPN----- 159 (179)
T ss_dssp CGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCGGGCEEC-----
T ss_pred cHhhcccCcccc-CCCC-------eEC-CCCCEECHHHHHHHHHhCC----------CCCCCCcCCCChhhCcch-----
Confidence 356899999996 7777 666 5999999999999997642 279999998753 5554
Q ss_pred CchhHHHHHHHHHhh
Q 018772 270 TPEEKQEIIDSYKSK 284 (350)
Q Consensus 270 ~~~ek~~li~~yk~~ 284 (350)
..-..+|+.|+..
T Consensus 160 --~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 160 --LAMKEVIDAFIQE 172 (179)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3356788888754
No 73
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=6.1e-08 Score=73.51 Aligned_cols=47 Identities=28% Similarity=0.669 Sum_probs=35.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
++.+|.||++.+ .+| .++ .|+|. ||..||.++ ..||+||.++..++.
T Consensus 24 ~~~~C~IC~~~~-~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 24 EEKLCKICMDRN-IAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK 71 (75)
T ss_dssp HHHSCSSSCSSC-CCB-------CCS-SSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCB
T ss_pred CCCCCCcCCCCC-CCE-------EEe-cCCCHHHHHHHhhCC---------------CCCccCCceecCcEE
Confidence 456899999974 333 445 59999 999999532 389999999876543
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=4.6e-08 Score=77.31 Aligned_cols=58 Identities=22% Similarity=0.554 Sum_probs=39.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--Ccccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLS 258 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~~ 258 (350)
++..+|+|||+.+. .+ ....|.+|+|.||.+||++|...+-.++ ......||. ||..+
T Consensus 3 ~~~~~C~IC~~~~~-~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYP-VE-----QMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCB-GG-----GEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccc-cc-----cceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCCC
Confidence 46789999999743 22 2233457999999999999876542111 012358999 99873
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.44 E-value=8.3e-08 Score=83.70 Aligned_cols=51 Identities=25% Similarity=0.572 Sum_probs=40.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++..|+||++. +.+| .++ .|+|+||..||.+|...+. .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~-~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMA-LREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSB-CSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChh-hcCc-------EEC-CCCCHHHHHHHHHHHHhCC----------CCCCCCccCcch
Confidence 3467899999997 4454 344 6999999999999997643 389999998753
No 76
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5e-08 Score=78.45 Aligned_cols=26 Identities=31% Similarity=0.829 Sum_probs=23.6
Q ss_pred CCCCCCccCCCCCCCCC-CCccCCCCC
Q 018772 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (350)
Q Consensus 31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~ 56 (350)
+..+|++|++|.|.+|+ .|+|+|...
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 36799999999999999 799999976
No 77
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-07 Score=71.05 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=41.6
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018772 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
..+|.||.+.|... . .-+.|+|.|...||.+|.+.+. ..+||+||....+-+|.
T Consensus 15 i~~C~IC~~~i~~g-----~---~C~~C~h~fH~~Ci~kWl~~~~---------~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQG-----Q---SCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSS-----E---ECSSSCCEECHHHHHHHSTTCS---------SCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccC-----C---ccCCCCchhhHHHHHHHHHhcC---------CCCCCCCcCcCCCCCCC
Confidence 47899999998632 1 1237999999999999997653 25899999988765554
No 78
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3e-07 Score=85.93 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=49.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC--Cccccce--eecCcc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYF--VIPSVI 266 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~--CR~~~~~--v~ps~~ 266 (350)
...+..|+||++. +..| .++..|+|+||..||.+|..... ...||+ ||..+.. ++|+.
T Consensus 178 ~~~el~CPIcl~~-f~DP-------Vts~~CGHsFcR~cI~~~~~~~~---------~~~CPvtGCr~~l~~~dL~pN~- 239 (267)
T 3htk_C 178 GKIELTCPITCKP-YEAP-------LISRKCNHVFDRDGIQNYLQGYT---------TRDCPQAACSQVVSMRDFVRDP- 239 (267)
T ss_dssp SBCCSBCTTTSSB-CSSE-------EEESSSCCEEEHHHHHHHSTTCS---------CEECSGGGCSCEECGGGEEECH-
T ss_pred CceeeECcCccCc-ccCC-------eeeCCCCCcccHHHHHHHHHhCC---------CCCCCcccccCcCchhhCCcCH-
Confidence 3467899999997 5666 55557999999999999986532 258999 9997642 44442
Q ss_pred cccCchhHHHHHHHHHhh
Q 018772 267 WYYTPEEKQEIIDSYKSK 284 (350)
Q Consensus 267 w~~~~~ek~~li~~yk~~ 284 (350)
.-..+|+.++.+
T Consensus 240 ------~L~~lve~~k~r 251 (267)
T 3htk_C 240 ------IMELRCKIAKMK 251 (267)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 234556655543
No 79
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.35 E-value=1.1e-07 Score=73.15 Aligned_cols=47 Identities=28% Similarity=0.727 Sum_probs=37.0
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
++.+|.||++... ++ .++ .|+|. ||..|+..|. .||+||..+..++.
T Consensus 17 ~~~~C~IC~~~~~-~~-------v~~-pCgH~~~C~~C~~~~~---------------~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NS-------TFC-PCGHTVCCESCAAQLQ---------------SCPVCRSRVEHVQH 64 (79)
T ss_dssp HHTBCTTTSSSBC-CE-------EEE-TTCBCCBCHHHHTTCS---------------BCTTTCCBCCEEEE
T ss_pred CCCEeEEeCcccC-cE-------EEE-CCCCHHHHHHHHHhcC---------------cCCCCCchhhCeEE
Confidence 4578999999743 22 556 59999 9999998762 79999999987654
No 80
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.24 E-value=5.8e-07 Score=70.03 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=23.4
Q ss_pred CCCCCCccCCCCCCCCC-CCccCCCCC
Q 018772 31 PNNICTYYQKGFCSYGS-RCRYEHVKP 56 (350)
Q Consensus 31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~ 56 (350)
+..+|++|++|.|..|+ .|+|+|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 35799999999999997 999999975
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=8.2e-07 Score=66.35 Aligned_cols=49 Identities=27% Similarity=0.752 Sum_probs=37.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
+.++.+|.|||+...+ + .+| .|+|. ||..|+.. .+.||+||..+..++.
T Consensus 12 ~~~~~~C~IC~~~~~~-~-------v~~-pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN-W-------VLL-PCRHTCLCDGCVKY---------------FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSCCC-C-------EET-TTTBCCSCTTHHHH---------------CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCCCC-E-------EEE-CCCChhhhHHHHhc---------------CCCCCCCCcchhceEE
Confidence 4457899999997322 1 455 59999 99999983 1489999999887654
No 82
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.19 E-value=8e-07 Score=70.13 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCC-CCccCCCCC
Q 018772 18 GEHCEFSHDWKDPPNNICTYYQKGFCSYGS-RCRYEHVKP 56 (350)
Q Consensus 18 G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~-~C~y~H~~~ 56 (350)
|..+.+.++... +..||++|++|.|..|+ .|+|+|...
T Consensus 4 ~~~~~~~~~~~~-~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 4 GSSGPVRDTKWL-TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp CCCSCCCSCSSS-EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred cccccccCCCcc-hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 556666665432 36799999999999998 999999976
No 83
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.07 E-value=1.8e-06 Score=69.00 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=37.1
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018772 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
|.+|--.|. .||-+..|.|+||++|+..|.+.++ ++||.||.++..|
T Consensus 4 C~~C~~Pi~--------iygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIK--------VYGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCS--------EEEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEE
T ss_pred cCccCCCeE--------EEeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeee
Confidence 667766654 3466667999999999999997654 5999999999864
No 84
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.95 E-value=1.9e-06 Score=83.81 Aligned_cols=48 Identities=31% Similarity=0.781 Sum_probs=38.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
.++..|.|||+.+. .| .+| .|+|. ||..||..| ..||+||..+..++.
T Consensus 293 ~~~~~C~IC~~~~~-~~-------v~l-pCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SV-------VFI-PCGHLVVCQECAPSL---------------RKCPICRGIIKGTVR 341 (345)
T ss_dssp HTTCBCTTTSSSBC-CE-------EEE-TTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEE
T ss_pred cCCCCCCccCCcCC-ce-------EEc-CCCChhHhHHHHhcC---------------CcCCCCCCCccCeEE
Confidence 45689999999743 33 556 59999 999999988 189999999887654
No 85
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.88 E-value=9.1e-06 Score=59.27 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=38.1
Q ss_pred cccCccccccccccccCCcccccceeecC-CCCC---cCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS-ECDH---PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~-~C~H---~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.+++.+|-||++. .+. . -++| +|.| .|..+||.+|...+. ..+||+||..+.+
T Consensus 3 ~~~~~~CrIC~~~-~~~------~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEE-LGN------E-RFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEE-CSC------C-CCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecC-CCC------c-eecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeeec
Confidence 4567889999997 221 1 2454 2445 999999999998653 2599999998753
No 86
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.87 E-value=1.5e-05 Score=72.53 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=18.9
Q ss_pred cCchhhcCCCCCCCCCcccCCCC
Q 018772 133 ICSFAAAGNCPRGEKCPHIHGDT 155 (350)
Q Consensus 133 ~C~~~~~G~C~~G~~C~~~Hg~~ 155 (350)
+|.+|..|.|.+ .+|+-.|...
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCTT
T ss_pred ccchhhcCCcCC-CCccCccCcc
Confidence 388999999999 7999888754
No 87
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.85 E-value=4.7e-06 Score=80.58 Aligned_cols=66 Identities=15% Similarity=0.388 Sum_probs=42.0
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
...+|+||++.+.+...-.++. --.+.|+|.|+..||.+|..+.......-+.+..+||.||.++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~-C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVS-CDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBC-CSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCcccc-ccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3468999999876521100111 11347999999999999997532111112345578999999754
No 88
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.77 E-value=1.2e-05 Score=58.73 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=41.0
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc--eeecC
Q 018772 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~v~ps 264 (350)
...|+|+++. +++| .+++.++|+|+.+||.+|.... .+||+.+.+.. -+||.
T Consensus 3 ~~~CpIs~~~-m~dP-------V~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKV-PRRP-------VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSC-CSSE-------EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCC-CCCC-------EEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence 4679999996 6666 6665799999999999999764 26999999875 35554
No 89
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.90 E-value=0.00037 Score=63.39 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=39.9
Q ss_pred Ccccccccc-----ccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCC
Q 018772 4 RVLCKFFAH-----GACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 4 ~~~C~~f~~-----G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
..+|.+| + |.|+.++.|...| ||++|++|.|++ .+|+.+|....
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhcCCcCC-CCccCccCccC
Confidence 4689999 6 5999999999999 999999999999 89999999764
No 90
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00068 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=18.2
Q ss_pred CCCCCccCCCCCCCCCCCccCCCCCCC
Q 018772 32 NNICTYYQKGFCSYGSRCRYEHVKPSR 58 (350)
Q Consensus 32 ~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (350)
..+|+.|++|.|.||++|.|+|.....
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSHHHH
T ss_pred cccCcccCcCCCCCCCccCCcCCHHHH
Confidence 367777776777777777777765543
No 91
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0024 Score=47.65 Aligned_cols=26 Identities=38% Similarity=0.838 Sum_probs=22.8
Q ss_pred CCccCchhhcCCCCCCCCCcccCCCC
Q 018772 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (350)
Q Consensus 130 ~~~~C~~~~~G~C~~G~~C~~~Hg~~ 155 (350)
+..+|..|..|.|++|++|.|+||..
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHH
Confidence 44899877999999999999999964
No 92
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.25 E-value=0.0034 Score=57.77 Aligned_cols=55 Identities=22% Similarity=0.533 Sum_probs=42.7
Q ss_pred cCccccccccccccCCcccccceee-cCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCc
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgi-l~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~ 265 (350)
.-.+|.||.+.|.. |+ =++|+|.|+..|+.+|.+... ...||.|+.....-+|..
T Consensus 179 ~i~~C~iC~~iv~~---------g~~C~~C~~~~H~~C~~~~~~~~~---------~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---------GQSCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TCCBCTTTCSBCSS---------CEECSSSCCEECHHHHHHHTTTCS---------SCBCTTTCCBCCSCCCCC
T ss_pred CCCcCcchhhHHhC---------CcccCccChHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCCCC
Confidence 35789999998763 33 335999999999999987643 258999999877766653
No 93
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.15 E-value=0.0066 Score=47.75 Aligned_cols=35 Identities=14% Similarity=0.512 Sum_probs=25.9
Q ss_pred cCccccccccccccCCcccccceee-cCCCCCcCcHHHHHH-Hh
Q 018772 193 QEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRN-WR 234 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgi-l~~C~H~FC~~CI~~-W~ 234 (350)
+++.|.||++.+..++ .. =..|+|.||..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a-------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC-------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc-------eEECCcCChHHhHHHCHHHhc
Confidence 5689999998644433 22 036999999999998 54
No 94
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.42 E-value=0.032 Score=38.69 Aligned_cols=29 Identities=45% Similarity=0.926 Sum_probs=24.5
Q ss_pred CCCccC-chhhcCCCCCCCCCcccCCCCCC
Q 018772 129 ADRSIC-SFAAAGNCPRGEKCPHIHGDTCP 157 (350)
Q Consensus 129 ~~~~~C-~~~~~G~C~~G~~C~~~Hg~~c~ 157 (350)
....+| .|++-|+|++|.+|++.|....+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 456889 79999999999999999976543
No 95
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.11 E-value=0.014 Score=40.43 Aligned_cols=23 Identities=30% Similarity=0.853 Sum_probs=11.0
Q ss_pred CCCCccC-CCCCCCCCCCccCCCC
Q 018772 33 NICTYYQ-KGFCSYGSRCRYEHVK 55 (350)
Q Consensus 33 ~~C~~f~-~G~C~~G~~C~y~H~~ 55 (350)
.+|.-|. -|.|++|.+|.++|..
T Consensus 21 ~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 21 SICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred chhhhccccccCCCCCCCCccccC
Confidence 3454443 3555555555555543
No 96
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.96 E-value=0.025 Score=51.99 Aligned_cols=26 Identities=35% Similarity=1.000 Sum_probs=20.3
Q ss_pred CCCCccCCCCCCCCCCCccCCCCCCC
Q 018772 33 NICTYYQKGFCSYGSRCRYEHVKPSR 58 (350)
Q Consensus 33 ~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (350)
.+|-||.+|.|.+|+.|+|.|..|..
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCc
Confidence 47888888888888888888877753
No 97
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.41 E-value=0.025 Score=51.99 Aligned_cols=25 Identities=40% Similarity=0.918 Sum_probs=22.5
Q ss_pred CccccccccccCCCCCCCCCCCCCC
Q 018772 4 RVLCKFFAHGACLKGEHCEFSHDWK 28 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~ 28 (350)
..+|-||.+|.|++|+.|+|.|.+.
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 4689999999999999999999754
No 98
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=89.59 E-value=0.056 Score=41.43 Aligned_cols=42 Identities=24% Similarity=0.590 Sum_probs=32.9
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCC
Q 018772 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV 54 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~ 54 (350)
...||||. .|++ ..|.|.|... ...|+|+. .|.+ ..|.|.|.
T Consensus 9 ~e~CKf~~--~Ctn-~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT--HCTN-KRCKYRHARS---HIMCREGA--NCTR-IDCLFGHP 50 (80)
Confidence 46799998 5888 9999999643 35899874 6886 77999995
No 99
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=82.85 E-value=0.27 Score=37.58 Aligned_cols=42 Identities=26% Similarity=0.599 Sum_probs=30.7
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCC
Q 018772 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
++|+|+. .|++ .+|.|.|.. ...|+|+. .|.+ ..|.|.|...
T Consensus 32 ~~Cr~g~--~C~~-~~C~f~HP~----~~~Crf~~--~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 32 IMCREGA--NCTR-IDCLFGHPI----NEDCRFGV--NCKN-IYCLFRHPPG 73 (80)
Confidence 4677774 5776 779999952 35798875 5776 7899999643
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.32 E-value=2.8 Score=32.52 Aligned_cols=57 Identities=23% Similarity=0.456 Sum_probs=45.0
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+....|.||-|.|--.. ....|+.-..|+-.-|..|..-=|+... .+||+|.+.+..
T Consensus 14 ~~~qiCqiCGD~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCC
T ss_pred cCCCccccccCccccCC--CCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCcccc
Confidence 34568999999986654 4557888889999999999987665443 499999998864
No 101
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.32 E-value=1.5 Score=34.40 Aligned_cols=44 Identities=32% Similarity=0.638 Sum_probs=35.0
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018772 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.-|-.|.-. .| |++.-.+|.+|+.|+..-.+..+ .||+|..+.-
T Consensus 29 ~nCKsCWf~--~k--------~LV~C~dHYLCl~CLtlmL~~Sd-----------rCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFE--NK--------GLVECNNHYLCLNCLTLLLSVSN-----------RCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSC--CS--------SEEECSSCEEEHHHHHHTCSSSS-----------EETTTTEECC
T ss_pred ccChhhccc--cC--------CeeeecchhhHHHHHHHHHhhcc-----------CCcccCCcCC
Confidence 458888874 22 78877799999999999887654 8999998764
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.23 E-value=12 Score=30.92 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=32.4
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH------HhhhC-CCCCCccccccccCCCCccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------WRSSS-PTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~------W~~~~-~~~~~~~~~~~~~CP~CR~~ 257 (350)
...+..|.||.+- - ..-.=.+|-.+||.+||.. +.+.. ... .-.|+.|+-.
T Consensus 54 Dg~~~~C~vC~dG-G--------~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~-------~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG-G--------NLICCDFCHNAFCKKCILRNLGRRELSTIMDENN-------QWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC-S--------EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTS-------CCCCTTTCCG
T ss_pred CCCCCcCeecCCC-C--------eeEecCCCchhhhHHHhCCCcchhHHHHhccCCC-------CeEcCCcCCH
Confidence 3355779999985 0 0112267999999999985 33332 111 2489999654
No 103
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=51.22 E-value=9.8 Score=27.54 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=34.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
..+..|.||.+. . ...+=..|...|++.|+.-....... ..-.||.|+...
T Consensus 10 ~~~~~C~vC~~~--~-------~ll~Cd~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--T-------DVLRCTHCAAAFHWRCHFPAGTSRPG-------TGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--T-------TCEECSSSCCEECHHHHCTTTCCCCS-------SSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--C-------eEEECCCCCCceecccCCCccCcCCC-------CCEECccccCCC
Confidence 345779999863 1 23555679999999999766544322 124899998653
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.55 E-value=1.5 Score=33.00 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=14.8
Q ss_pred CCCCcCcHHHHHHHhh
Q 018772 220 ECDHPFCISCIRNWRS 235 (350)
Q Consensus 220 ~C~H~FC~~CI~~W~~ 235 (350)
+|++.||+.|-..|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999999986
No 105
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.37 E-value=6.8 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=26.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (350)
...+..|.||.+. -+. ..+..=..|...|++.|+.-+.
T Consensus 4 ~~~~~~C~~C~~~-g~~-----~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSP-GDL-----LDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCC-CCT-----TTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCC-CCC-----cCCeECCCCCCCcChHHhCCcc
Confidence 3467899999885 111 1223446899999999997654
No 106
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.19 E-value=14 Score=26.30 Aligned_cols=43 Identities=26% Similarity=0.643 Sum_probs=27.8
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018772 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
..|--|...+.++. +| .=+.|++.||++|=.=-.. . .-.||-|
T Consensus 16 ~~C~~C~~~~~~~~-----~y-~C~~C~~~FC~dCD~fiHe-~----------Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-----VY-VCAVCQNVFCVDCDVFVHD-S----------LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-----EE-CCTTTTCCBCHHHHHTTTT-T----------SCSSSTT
T ss_pred CcccccCcccCCCc-----cE-ECCccCcCcccchhHHHHh-h----------ccCCcCC
Confidence 46888888764321 23 3568999999999432222 1 3489887
No 107
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=39.41 E-value=6.2 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=0.0
Q ss_pred CCccCchhhcCCCCCCCCCcccCCCC
Q 018772 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (350)
Q Consensus 130 ~~~~C~~~~~G~C~~G~~C~~~Hg~~ 155 (350)
+.+.|||.. .|.||.+|+|.|++-
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 457899965 599999999999875
No 108
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=34.74 E-value=1.2e+02 Score=32.93 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=51.3
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc--eeecCccc
Q 018772 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIW 267 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~v~ps~~w 267 (350)
+..++..|+|=++. +.+| .++++=+++|=...|.+|.... .+||.=|.+.. -++|+.
T Consensus 887 ~iP~~F~cPIs~~l-M~DP-------VilpsG~~TydR~~I~~wl~~~-----------~tdP~Tr~~L~~~~liPN~-- 945 (968)
T 3m62_A 887 DVPDEFLDPLMYTI-MKDP-------VILPASKMNIDRSTIKAHLLSD-----------STDPFNRMPLKLEDVTPNE-- 945 (968)
T ss_dssp CSCGGGBCTTTCSB-CSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEECH--
T ss_pred CCcHHhCCcchhhH-HhCC-------eEcCCCCEEECHHHHHHHHhcC-----------CCCCCCCCCCCcccccccH--
Confidence 34466889999995 8888 7886444799999999999753 38999998775 366663
Q ss_pred ccCchhHHHHHHHHHhh
Q 018772 268 YYTPEEKQEIIDSYKSK 284 (350)
Q Consensus 268 ~~~~~ek~~li~~yk~~ 284 (350)
+-..+|+.|.+.
T Consensus 946 -----~Lk~~I~~w~~~ 957 (968)
T 3m62_A 946 -----ELRQKILCFKKQ 957 (968)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH
Confidence 345677777643
No 109
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.71 E-value=28 Score=29.76 Aligned_cols=68 Identities=13% Similarity=0.382 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeecC--CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc--ceeecCcc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS--ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS--YFVIPSVI 266 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~--~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~--~~v~ps~~ 266 (350)
...+..|.||-+- - ..-+=. +|...||.+||..+........+ .....-.|=+|.-.. ..+.+..-
T Consensus 76 DG~~~yC~wC~~G-g--------~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~~l~~ll~~R~d 145 (159)
T 3a1b_A 76 DGYQSYCTICCGG-R--------EVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHKGTYGLLRRRED 145 (159)
T ss_dssp TSSBSSCTTTSCC-S--------EEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSSCEETTEEBCTT
T ss_pred CCCcceeeEecCC-C--------eEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCccHHHHhhhhhh
Confidence 3356889999985 1 112222 58899999999998765321100 011224688887544 24556666
Q ss_pred cc
Q 018772 267 WY 268 (350)
Q Consensus 267 w~ 268 (350)
|.
T Consensus 146 w~ 147 (159)
T 3a1b_A 146 WP 147 (159)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=31.16 E-value=50 Score=27.52 Aligned_cols=51 Identities=20% Similarity=0.409 Sum_probs=33.1
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh------h-CCCCCCccccccccCCCCccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS------S-SPTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~------~-~~~~~~~~~~~~~~CP~CR~~ 257 (350)
...+..|.||.+- - ..-.-..|--+||+.||..=.. . .... .-.||+|+..
T Consensus 60 Dg~~d~C~vC~~G-G--------~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~-------~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG-G--------NLICCDFCHNAFCKKCILRNLGRKELSTIMDENN-------QWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC-S--------SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT-------CCCCTTTCCC
T ss_pred CCCCCeecccCCC-C--------cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC-------CCEeecccCc
Confidence 4456889999985 1 1234457899999999984322 1 1111 2489999853
No 111
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.79 E-value=4.1 Score=30.90 Aligned_cols=21 Identities=29% Similarity=1.007 Sum_probs=16.3
Q ss_pred ecCCCCCcCcHHHHHHHhhhC
Q 018772 217 LLSECDHPFCISCIRNWRSSS 237 (350)
Q Consensus 217 il~~C~H~FC~~CI~~W~~~~ 237 (350)
+=+.|++.||+.|-..|...+
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTT
T ss_pred EeCCCCCccccccCCchhhcC
Confidence 334699999999999995444
No 112
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.18 E-value=46 Score=23.26 Aligned_cols=51 Identities=22% Similarity=0.535 Sum_probs=32.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (350)
...+..|.||.+. . ...+=..|.-.|++.|+.-=..... ...-.||.|+..
T Consensus 8 ~~~~~~C~vC~~~--g-------~ll~CD~C~~~fH~~Cl~p~l~~~p-------~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--G-------EIILCDTCPRAYHMVCLDPDMEKAP-------EGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC--S-------SEEECSSSSCEEEHHHHCTTCCSCC-------CSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC--C-------cEEECCCCChhhhhhccCCCCCCCC-------CCceECcccccc
Confidence 4467889999873 1 2244557889999999875322211 123579999753
No 113
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.15 E-value=31 Score=27.18 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=12.2
Q ss_pred cCcHHHHHHHhhhC
Q 018772 224 PFCISCIRNWRSSS 237 (350)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (350)
-||..|+-+|....
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999864
No 114
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.79 E-value=32 Score=27.07 Aligned_cols=14 Identities=29% Similarity=1.016 Sum_probs=12.1
Q ss_pred cCcHHHHHHHhhhC
Q 018772 224 PFCISCIRNWRSSS 237 (350)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (350)
-||..|+-+|....
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999853
No 115
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.86 E-value=78 Score=24.04 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=28.2
Q ss_pred ccCccccccccccccCCcccccceeecCC-CCCcCcHHHHHHHhhhC
Q 018772 192 SQEIECSVCLDRVLSKPTAAERKFGLLSE-CDHPFCISCIRNWRSSS 237 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~-C~H~FC~~CI~~W~~~~ 237 (350)
+.-+.|.+|-|.+ ++ -.|.--|+ =.|.||+.|-|...+..
T Consensus 13 ~a~l~CtlC~erL-Ed-----tHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERL-ED-----THFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCC-SS-----TTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhh-cc-----CceeeCCCccCCeeeccccHHHHHhc
Confidence 4557899999984 43 24555332 37999999999877653
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.46 E-value=35 Score=24.79 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=22.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHH
Q 018772 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNW 233 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W 233 (350)
+..|.+|...+. - -.|+ -.=-.|+.+||-+|....
T Consensus 11 ~~~C~~C~~~F~-~---~~Rr-HHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFS-L---LNRK-HHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCB-T---TBCC-EECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccC-C---cccc-ccCCCCCEEEcccccCCe
Confidence 468999988632 1 1222 223469999999997543
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.39 E-value=33 Score=25.51 Aligned_cols=56 Identities=23% Similarity=0.520 Sum_probs=32.0
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcc
Q 018772 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (350)
..+-..|.+|...+- - ..|+ -.=-.|+.+||-+|......-.. ..+.++.|-.|-.
T Consensus 16 d~~~~~C~~C~~~Fs-~---~~Rr-HHCR~CG~v~C~~Cs~~~~~l~~-----~~~~~RVC~~C~~ 71 (82)
T 2yw8_A 16 DDEATHCRQCEKEFS-I---SRRK-HHCRNCGHIFCNTCSSNELALPS-----YPKPVRVCDSCHT 71 (82)
T ss_dssp CCCCCBCTTTCCBCB-T---TBCC-EECTTTCCEECSGGGCEEECCTT-----CSSCEEECHHHHH
T ss_pred CccCCcccCcCCccc-C---cccc-ccCCCCCCEEChHHhCCeeecCC-----CCCcCEECHHHHH
Confidence 334467999988632 1 1222 22347999999999865432111 1234567766644
Done!