Query 018774
Match_columns 350
No_of_seqs 230 out of 2205
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2E-33 6.9E-38 265.7 26.0 300 45-347 5-311 (460)
2 3mkt_A Multi antimicrobial ext 99.9 1.3E-22 4.5E-27 191.4 20.8 209 45-254 231-446 (460)
3 4hkr_A Calcium release-activat 32.8 1.9E+02 0.0064 23.1 14.9 81 83-164 56-144 (214)
4 2k1k_A Ephrin type-A receptor 25.7 74 0.0025 17.8 3.0 10 231-240 15-24 (38)
5 1pw4_A Glycerol-3-phosphate tr 23.1 3.7E+02 0.013 23.3 24.1 16 52-67 28-43 (451)
6 2jwa_A Receptor tyrosine-prote 18.0 1.6E+02 0.0055 17.1 3.7 7 248-254 32-38 (44)
7 2ks1_B Epidermal growth factor 15.6 1.9E+02 0.0064 16.8 4.6 6 249-254 33-38 (44)
8 3aae_X 32MER peptide from leuc 12.2 2E+02 0.0069 15.3 2.8 26 11-36 6-31 (37)
9 4ev6_A Magnesium transport pro 7.8 9.8E+02 0.033 20.3 7.4 12 243-254 325-336 (339)
10 2wgm_A ATP synthase subunit C, 6.2 6.6E+02 0.023 16.8 5.2 58 104-161 26-89 (89)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2e-33 Score=265.67 Aligned_cols=300 Identities=16% Similarity=0.248 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (350)
Q Consensus 45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~ 124 (350)
+..++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.... ..+..+++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999999999999999999999997764 67789999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHHH
Q 018774 125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (350)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (350)
+++.++.+++++.+..+++++.++++.+.++++.+++.+++..+.+..|+++++++.++..+...+.+++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877777788999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--c-cCCCChHhHHhHHHHHHH
Q 018774 205 WVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR--T-WTGFSMEAFSDLWEFVKL 277 (350)
Q Consensus 205 ~~~~~~~~~~i~l~~~li~~-~---~~G~~G~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 277 (350)
..++++.++|+++++++++. + ++|+.|+++|+.+++++..++..+++++++... + ++++.+.+++.+|++++.
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 699999999999999999988888777663221 1 223334566788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhHhhhhHhhhhhhhhhcccCC
Q 018774 278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWESQICYYSISGDLDCNWCLLLYTDID 347 (350)
Q Consensus 278 ~~p~~l~~~~~~~~~~~~~~~~~~~g~~~~~vaa~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (350)
++|..++...+.+.+.+.+.+++++|+. ++|+|+++.++.++..+++.+++++.++.+++.++.+|.|
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999865 4669999999999999999999999999999999988876
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.90 E-value=1.3e-22 Score=191.45 Aligned_cols=209 Identities=14% Similarity=0.098 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 018774 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (350)
Q Consensus 45 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~vd~~~i~~lg~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~~g~~~ 124 (350)
+.+++..|++++.+.|..++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~ 309 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQD 309 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566889999999999999999999999999999999999999999999999985 68899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchhHH
Q 018774 125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (350)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (350)
+++.++..+++..+...++++.+++ +.+.+++..++..|++..+.+..++++++++.++.+++.+..+.+++.||++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 389 (460)
T 3mkt_A 310 TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAI 389 (460)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 9999999999999999999987766 668899999998888888889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhh----cC-CccchHHHHHHHHHHHHHHHHHHHHHhc
Q 018774 204 AWVSLASL-LVHLLVTWLFVYK----MQ-LGLIGTAITLSFSWWVLIFGMFGYVACG 254 (350)
Q Consensus 204 ~~~~~~~~-~~~i~l~~~li~~----~~-~G~~G~a~a~~i~~~~~~~~~~~~~~~~ 254 (350)
++.++++. ++++++++++.+. .+ +|+.|+|+|+.+++.+..++..+.++|+
T Consensus 390 ~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 390 FHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999999985 45 9999999999999998887766555443
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=32.79 E-value=1.9e+02 Score=23.10 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH--------hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018774 83 GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQA--------FGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFAS 154 (350)
Q Consensus 83 g~~~~a~~~~a~~l~~~~~~~~~~g~~~a~~~~~s~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (350)
.+.-+.+|+....+.-.. ..+..-+++-+.|.+-.. ..+.-.+|.+.++..+..++..+|+++.+.-...-
T Consensus 56 p~~LLi~fav~Ttllv~v-ml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAV-HMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344578888888876653 456666666666655433 12335678999999999999888887665533333
Q ss_pred HHHHhcCCCH
Q 018774 155 PVLKLLGQPD 164 (350)
Q Consensus 155 ~~~~~~~~~~ 164 (350)
-+++.+..+.
T Consensus 135 ~WVKF~~~~~ 144 (214)
T 4hkr_A 135 CWVKFYDLSR 144 (214)
T ss_dssp HHHHHTTTCH
T ss_pred heEEeecCCc
Confidence 4455554443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.68 E-value=74 Score=17.78 Aligned_cols=10 Identities=10% Similarity=0.012 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 018774 231 GTAITLSFSW 240 (350)
Q Consensus 231 G~a~a~~i~~ 240 (350)
|+.++.+.+-
T Consensus 15 GiVvG~v~gv 24 (38)
T 2k1k_A 15 AVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4444444433
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.15 E-value=3.7e+02 Score=23.33 Aligned_cols=16 Identities=6% Similarity=-0.189 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018774 52 KKLWHIVGPTIFSRMA 67 (350)
Q Consensus 52 k~~~~~~~p~~~~~~~ 67 (350)
+.+.....-.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~~ 43 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLV 43 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444433443333
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.00 E-value=1.6e+02 Score=17.07 Aligned_cols=7 Identities=0% Similarity=-0.482 Sum_probs=3.1
Q ss_pred HHHHHhc
Q 018774 248 FGYVACG 254 (350)
Q Consensus 248 ~~~~~~~ 254 (350)
.++++|+
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444444
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.62 E-value=1.9e+02 Score=16.76 Aligned_cols=6 Identities=0% Similarity=-0.081 Sum_probs=2.4
Q ss_pred HHHHhc
Q 018774 249 GYVACG 254 (350)
Q Consensus 249 ~~~~~~ 254 (350)
++++++
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 334433
No 8
>3aae_X 32MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 3.30A {Mus musculus}
Probab=12.17 E-value=2e+02 Score=15.33 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=16.1
Q ss_pred ccCccccCCCCCccccccCCCCCCCC
Q 018774 11 NVPLLQDSASTNVPLLQGSASTAPSP 36 (350)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (350)
...++++.++++...+++....++..
T Consensus 6 tsg~iaelpseeg~klehftklrpkr 31 (37)
T 3aae_X 6 SSGLISELPSEEGRRLEHFTKLRPKR 31 (37)
T ss_dssp ---CCCCCCCCCCSCCCCTTTTSCCC
T ss_pred ccchhhhCcchhhhHHHHHHhhCccc
Confidence 34567777888888888776555443
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=7.77 E-value=9.8e+02 Score=20.28 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhc
Q 018774 243 LIFGMFGYVACG 254 (350)
Q Consensus 243 ~~~~~~~~~~~~ 254 (350)
.+++.+++++|+
T Consensus 325 ~~~~~~~~fkrk 336 (339)
T 4ev6_A 325 IIMIFVYIFRRS 336 (339)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 333444445444
No 10
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=6.17 E-value=6.6e+02 Score=16.81 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHhHhcccchhhHHHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHhcC
Q 018774 104 LLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL------FICCVLLLPLYVFASPVLKLLG 161 (350)
Q Consensus 104 ~~~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~ 161 (350)
+..+++++...--+-.--++|+|...+.+.+.+... .+.++.+++++.+..|+...++
T Consensus 26 iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~~~~~ 89 (89)
T 2wgm_A 26 IGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!