Query 018774
Match_columns 350
No_of_seqs 230 out of 2205
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 05:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018774.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018774hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 33.8 1.1E+02 0.008 24.5 20.3 27 226-252 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 13.3 2.7E+02 0.019 21.2 18.0 9 226-234 375-383 (417)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 3.7 1.7E+02 0.012 18.1 1.2 18 271-288 61-78 (91)
4 d2yvxa3 f.57.1.1 (A:276-448) M 3.7 6.6E+02 0.048 17.3 6.6 36 114-149 61-98 (173)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 3.0 5.9E+02 0.043 15.5 9.3 23 271-293 70-92 (100)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 2.8 4.9E+02 0.036 14.2 2.9 27 117-143 3-29 (53)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 2.7 1.1E+03 0.081 18.3 6.0 28 43-70 31-59 (405)
8 d1gg2g_ a.137.3.1 (G:) Transdu 2.7 3.5E+02 0.026 14.8 1.7 20 329-348 23-42 (54)
9 d1m56d_ f.23.8.1 (D:) Bacteria 2.4 5E+02 0.036 13.4 4.3 25 120-144 4-28 (42)
10 d2o3fa1 a.4.1.20 (A:1-83) Puta 2.0 5.4E+02 0.039 15.1 2.0 30 106-135 46-75 (83)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=33.84 E-value=1.1e+02 Score=24.51 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=14.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHH
Q 018774 226 QLGLIGTAITLSFSWWVLIFGMFGYVA 252 (350)
Q Consensus 226 ~~G~~G~a~a~~i~~~~~~~~~~~~~~ 252 (350)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567666665555555555444444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.32 E-value=2.7e+02 Score=21.21 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=4.2
Q ss_pred CCccchHHH
Q 018774 226 QLGLIGTAI 234 (350)
Q Consensus 226 ~~G~~G~a~ 234 (350)
.+|.....+
T Consensus 375 ~~g~~~~~~ 383 (417)
T d1pv7a_ 375 SIGFQGAYL 383 (417)
T ss_dssp HHCHHHHHH
T ss_pred HHCHHHHHH
Confidence 345544443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.70 E-value=1.7e+02 Score=18.08 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018774 271 LWEFVKLSVASGVMLCLE 288 (350)
Q Consensus 271 ~~~~~~~~~p~~l~~~~~ 288 (350)
..|+....+|..+...+.
T Consensus 61 ~lEi~WtiIP~iil~~ia 78 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLA 78 (91)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 457888889988755443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.67 E-value=6.6e+02 Score=17.35 Aligned_cols=36 Identities=17% Similarity=-0.044 Sum_probs=21.7
Q ss_pred HHHHhHh--cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 018774 114 TLCGQAF--GGKKYYMLGVYMQRSWIVLFICCVLLLPL 149 (350)
Q Consensus 114 ~~~s~~~--g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (350)
+.+-|.. |+-+.++.++.+.+=...++..++.+.++
T Consensus 61 ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 61 TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 33356667777777777777777665543
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.95 E-value=5.9e+02 Score=15.48 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018774 271 LWEFVKLSVASGVMLCLENWYYR 293 (350)
Q Consensus 271 ~~~~~~~~~p~~l~~~~~~~~~~ 293 (350)
..|+...-+|..+...+...+..
T Consensus 70 ~LEiiWTviP~lILi~l~~pS~~ 92 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIGAFSLP 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999998876555444433
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.77 E-value=4.9e+02 Score=14.18 Aligned_cols=27 Identities=4% Similarity=-0.012 Sum_probs=14.8
Q ss_pred HhHhcccchhhHHHHHHHHHHHHHHHH
Q 018774 117 GQAFGGKKYYMLGVYMQRSWIVLFICC 143 (350)
Q Consensus 117 s~~~g~~~~~~~~~~~~~~~~~~~~~~ 143 (350)
++..|++..+-++.-+.....++..-+
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 556666666666655555554444333
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.73 E-value=1.1e+03 Score=18.29 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 018774 43 LTRRFWIESKKLWHI-VGPTIFSRMASYS 70 (350)
Q Consensus 43 ~~~~~~~~~k~~~~~-~~p~~~~~~~~~~ 70 (350)
+.+...+.+-+++|+ -.|+++..+...+
T Consensus 31 ~l~~~g~lFi~lL~m~v~PLIf~sii~gi 59 (405)
T d2nwwa1 31 YVKPFGDLFVRLLKMLVMPIVFASLVVGA 59 (405)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777774 4455555554433
No 8
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.69 E-value=3.5e+02 Score=14.80 Aligned_cols=20 Identities=10% Similarity=-0.250 Sum_probs=12.5
Q ss_pred hhhhHhhhhhhhhhcccCCC
Q 018774 329 SISGDLDCNWCLLLYTDIDF 348 (350)
Q Consensus 329 ~~~a~~~~~~~~~~~~~~~~ 348 (350)
++.++.-++.|..++.+.|.
T Consensus 23 vS~aa~~l~~y~e~~~~~Dp 42 (54)
T d1gg2g_ 23 VSKAAADLMAYCEAHAKEDP 42 (54)
T ss_dssp HHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHHHHHHHhcCcCCC
Confidence 45666666776666666553
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.41 E-value=5e+02 Score=13.38 Aligned_cols=25 Identities=8% Similarity=-0.122 Sum_probs=13.6
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHH
Q 018774 120 FGGKKYYMLGVYMQRSWIVLFICCV 144 (350)
Q Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~i 144 (350)
.|+=|...-++.+...+.+..-.++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i 28 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAV 28 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHH
Confidence 4555655666666655555544443
No 10
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=1.98 E-value=5.4e+02 Score=15.14 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHhHhcccchhhHHHHHHHH
Q 018774 106 LGMASALETLCGQAFGGKKYYMLGVYMQRS 135 (350)
Q Consensus 106 ~g~~~a~~~~~s~~~g~~~~~~~~~~~~~~ 135 (350)
.+++.+......+.+|=+.+.+.+..+.+-
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455667778889999999999988777654
Done!