Query 018775
Match_columns 350
No_of_seqs 186 out of 1972
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.1E-42 2.5E-47 306.5 27.2 334 7-349 3-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 5.7E-40 1.2E-44 298.7 24.4 287 22-336 2-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 3.3E-39 7.1E-44 284.2 18.8 234 89-326 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 7.2E-19 1.6E-23 151.0 15.0 160 184-349 49-237 (238)
5 TIGR00740 methyltransferase, p 99.8 1.3E-19 2.8E-24 159.3 8.6 159 185-348 52-238 (239)
6 PF01209 Ubie_methyltran: ubiE 99.8 8.4E-20 1.8E-24 158.4 6.8 158 184-349 45-233 (233)
7 PTZ00098 phosphoethanolamine N 99.8 7.2E-18 1.6E-22 149.8 16.7 155 174-339 42-204 (263)
8 PRK15451 tRNA cmo(5)U34 methyl 99.8 5.9E-19 1.3E-23 155.6 7.7 151 185-336 55-229 (247)
9 PLN02233 ubiquinone biosynthes 99.8 2.4E-17 5.2E-22 146.3 17.7 161 184-348 71-260 (261)
10 TIGR02752 MenG_heptapren 2-hep 99.8 1.9E-17 4.1E-22 144.8 15.6 167 175-349 36-231 (231)
11 PLN02244 tocopherol O-methyltr 99.7 8.6E-17 1.9E-21 148.1 17.2 150 185-339 117-280 (340)
12 COG2230 Cfa Cyclopropane fatty 99.7 1.1E-16 2.5E-21 139.8 14.5 157 173-339 61-225 (283)
13 KOG1540 Ubiquinone biosynthesi 99.7 1.1E-16 2.4E-21 134.9 13.4 153 175-334 91-278 (296)
14 PRK14103 trans-aconitate 2-met 99.7 1.5E-16 3.3E-21 141.1 14.6 155 174-335 19-182 (255)
15 PF02353 CMAS: Mycolic acid cy 99.7 1.7E-16 3.8E-21 140.8 13.9 161 173-339 51-219 (273)
16 PLN02490 MPBQ/MSBQ methyltrans 99.7 4.7E-16 1E-20 141.3 16.6 141 185-340 112-259 (340)
17 PRK00216 ubiE ubiquinone/menaq 99.7 1.3E-15 2.9E-20 133.7 17.0 164 176-349 43-238 (239)
18 PRK15068 tRNA mo(5)U34 methylt 99.7 8.8E-16 1.9E-20 140.0 16.1 152 176-338 114-275 (322)
19 TIGR00452 methyltransferase, p 99.7 8.3E-16 1.8E-20 138.6 15.5 153 175-338 112-274 (314)
20 PLN02336 phosphoethanolamine N 99.7 1.1E-15 2.3E-20 147.8 16.3 152 174-339 256-416 (475)
21 smart00828 PKS_MT Methyltransf 99.7 1E-15 2.2E-20 133.2 13.9 136 188-339 1-146 (224)
22 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2E-15 4.4E-20 131.2 15.4 164 176-349 31-223 (223)
23 PRK11207 tellurite resistance 99.7 2.4E-15 5.2E-20 128.0 14.4 140 174-335 20-168 (197)
24 PRK11873 arsM arsenite S-adeno 99.7 2.7E-15 5.9E-20 134.4 15.1 145 184-337 75-230 (272)
25 PF12847 Methyltransf_18: Meth 99.7 4.7E-16 1E-20 120.1 8.6 98 186-284 1-111 (112)
26 PLN02396 hexaprenyldihydroxybe 99.6 7.6E-16 1.7E-20 139.5 9.8 145 186-338 131-290 (322)
27 PRK08317 hypothetical protein; 99.6 1.5E-14 3.2E-19 127.1 16.0 156 176-337 11-176 (241)
28 PF13489 Methyltransf_23: Meth 99.6 1.8E-15 3.9E-20 124.5 9.3 136 184-334 20-160 (161)
29 PRK11036 putative S-adenosyl-L 99.6 5E-15 1.1E-19 131.4 12.6 159 175-342 36-212 (255)
30 PRK06922 hypothetical protein; 99.6 6.4E-15 1.4E-19 141.8 12.9 143 145-290 377-543 (677)
31 PF13847 Methyltransf_31: Meth 99.6 8.4E-16 1.8E-20 125.5 5.4 137 185-329 2-152 (152)
32 TIGR02021 BchM-ChlM magnesium 99.6 1.4E-14 3.1E-19 125.5 12.8 178 148-339 17-208 (219)
33 TIGR00477 tehB tellurite resis 99.6 3.2E-14 7E-19 120.9 13.9 140 175-336 21-168 (195)
34 PRK01683 trans-aconitate 2-met 99.6 5.3E-14 1.1E-18 125.2 15.2 106 173-283 20-129 (258)
35 PF08241 Methyltransf_11: Meth 99.6 5.8E-15 1.2E-19 110.1 6.9 88 191-282 1-95 (95)
36 PF06080 DUF938: Protein of un 99.6 5.6E-14 1.2E-18 117.1 13.0 158 189-349 28-204 (204)
37 PRK06202 hypothetical protein; 99.6 7.5E-14 1.6E-18 122.1 14.5 144 185-339 59-224 (232)
38 PF08242 Methyltransf_12: Meth 99.6 1.7E-15 3.7E-20 114.3 3.1 87 191-280 1-99 (99)
39 PRK05785 hypothetical protein; 99.5 1.7E-13 3.6E-18 119.0 15.3 150 186-349 51-224 (226)
40 PRK11705 cyclopropane fatty ac 99.5 1.4E-13 3.1E-18 128.3 15.5 155 174-340 157-315 (383)
41 TIGR02072 BioC biotin biosynth 99.5 1.9E-13 4E-18 120.1 15.3 136 186-336 34-175 (240)
42 PRK07580 Mg-protoporphyrin IX 99.5 1.1E-13 2.4E-18 120.9 12.6 144 184-340 61-217 (230)
43 COG4106 Tam Trans-aconitate me 99.5 5.2E-14 1.1E-18 116.0 9.5 166 173-349 19-203 (257)
44 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.5E-14 5.5E-19 120.8 7.4 143 186-338 59-216 (243)
45 KOG1270 Methyltransferases [Co 99.5 2.7E-14 5.9E-19 121.4 7.4 143 187-337 90-249 (282)
46 TIGR00537 hemK_rel_arch HemK-r 99.5 5E-13 1.1E-17 112.1 15.0 134 185-349 18-177 (179)
47 PLN03075 nicotianamine synthas 99.5 2E-13 4.4E-18 120.9 12.8 137 185-349 122-274 (296)
48 PRK04266 fibrillarin; Provisio 99.5 1.3E-12 2.7E-17 113.0 17.5 144 179-349 67-225 (226)
49 PRK10258 biotin biosynthesis p 99.5 3.9E-13 8.5E-18 119.0 14.5 146 172-332 30-182 (251)
50 PLN02336 phosphoethanolamine N 99.5 1.9E-13 4.1E-18 132.2 13.0 143 174-334 27-179 (475)
51 PRK12335 tellurite resistance 99.5 4E-13 8.7E-18 121.1 14.3 131 186-336 120-258 (287)
52 smart00138 MeTrc Methyltransfe 99.5 2.1E-13 4.6E-18 121.1 11.9 99 185-284 98-242 (264)
53 PRK08287 cobalt-precorrin-6Y C 99.5 7E-13 1.5E-17 112.0 14.3 125 177-337 24-156 (187)
54 TIGR03587 Pse_Me-ase pseudamin 99.5 3.1E-13 6.6E-18 115.3 12.0 103 184-289 41-147 (204)
55 PF13649 Methyltransf_25: Meth 99.5 4.6E-14 1E-18 106.8 4.6 88 190-278 1-101 (101)
56 TIGR03840 TMPT_Se_Te thiopurin 99.5 4.6E-12 1E-16 108.6 16.5 132 185-337 33-187 (213)
57 KOG4300 Predicted methyltransf 99.5 3.7E-13 8.1E-18 110.2 9.1 174 159-341 51-236 (252)
58 TIGR03438 probable methyltrans 99.4 3.7E-12 8.1E-17 115.5 16.6 96 186-282 63-175 (301)
59 TIGR00138 gidB 16S rRNA methyl 99.4 1.8E-12 3.9E-17 108.5 12.9 123 186-344 42-176 (181)
60 PF08003 Methyltransf_9: Prote 99.4 1.7E-12 3.6E-17 113.8 12.8 142 185-338 114-268 (315)
61 PF05891 Methyltransf_PK: AdoM 99.4 5.6E-13 1.2E-17 111.7 8.9 139 185-338 54-202 (218)
62 PLN02585 magnesium protoporphy 99.4 2.2E-12 4.7E-17 116.7 13.2 150 186-349 144-314 (315)
63 PRK00107 gidB 16S rRNA methylt 99.4 6.7E-12 1.4E-16 105.3 15.2 129 185-349 44-186 (187)
64 KOG2361 Predicted methyltransf 99.4 7.4E-13 1.6E-17 111.2 8.4 145 189-335 74-235 (264)
65 PRK05134 bifunctional 3-demeth 99.4 3.1E-12 6.7E-17 112.0 12.0 144 184-337 46-205 (233)
66 PF05401 NodS: Nodulation prot 99.4 1.2E-12 2.7E-17 107.7 8.2 135 179-338 38-180 (201)
67 PF03848 TehB: Tellurite resis 99.4 2.9E-12 6.3E-17 106.8 9.4 139 175-335 21-167 (192)
68 PRK13255 thiopurine S-methyltr 99.4 2.4E-11 5.2E-16 104.6 15.4 133 184-337 35-190 (218)
69 PRK15001 SAM-dependent 23S rib 99.4 6.1E-12 1.3E-16 116.2 11.4 108 174-284 218-340 (378)
70 TIGR02469 CbiT precorrin-6Y C5 99.3 2.6E-11 5.7E-16 95.0 11.4 100 176-283 11-121 (124)
71 TIGR03534 RF_mod_PrmC protein- 99.3 4.1E-11 8.9E-16 106.1 13.4 123 186-338 87-242 (251)
72 PRK09489 rsmC 16S ribosomal RN 99.3 2.4E-11 5.2E-16 111.5 11.5 107 175-284 187-303 (342)
73 TIGR01983 UbiG ubiquinone bios 99.3 1.6E-11 3.4E-16 106.9 9.5 142 186-337 45-203 (224)
74 PTZ00146 fibrillarin; Provisio 99.3 2.1E-10 4.5E-15 101.5 16.4 141 184-348 130-285 (293)
75 TIGR02081 metW methionine bios 99.3 8.3E-11 1.8E-15 100.0 13.5 142 185-338 12-168 (194)
76 PRK09328 N5-glutamine S-adenos 99.3 1.5E-10 3.2E-15 104.0 15.8 136 184-349 106-275 (275)
77 PF05175 MTS: Methyltransferas 99.3 1.6E-11 3.5E-16 101.9 8.4 98 186-284 31-140 (170)
78 PF07021 MetW: Methionine bios 99.3 8.6E-11 1.9E-15 96.7 11.7 140 185-340 12-170 (193)
79 PRK00121 trmB tRNA (guanine-N( 99.3 2E-11 4.2E-16 104.3 8.3 98 186-284 40-156 (202)
80 PRK00517 prmA ribosomal protei 99.2 1.7E-10 3.8E-15 101.9 13.9 120 185-344 118-245 (250)
81 TIGR03533 L3_gln_methyl protei 99.2 3.2E-10 6.9E-15 101.8 15.1 121 186-337 121-274 (284)
82 COG2813 RsmC 16S RNA G1207 met 99.2 4.1E-10 8.9E-15 99.1 15.2 142 174-350 148-300 (300)
83 TIGR00536 hemK_fam HemK family 99.2 4.3E-10 9.4E-15 101.2 15.5 132 188-349 116-282 (284)
84 PRK13944 protein-L-isoaspartat 99.2 9.8E-11 2.1E-15 100.3 10.5 98 175-283 63-172 (205)
85 PRK14968 putative methyltransf 99.2 4.9E-10 1.1E-14 94.6 14.6 134 185-349 22-188 (188)
86 PLN02232 ubiquinone biosynthes 99.2 3.5E-11 7.6E-16 98.8 7.1 130 214-347 1-158 (160)
87 COG2242 CobL Precorrin-6B meth 99.2 3.8E-10 8.3E-15 92.3 12.7 99 177-284 27-135 (187)
88 PRK14966 unknown domain/N5-glu 99.2 7.1E-10 1.5E-14 102.7 15.7 134 186-349 251-418 (423)
89 COG4123 Predicted O-methyltran 99.2 3.2E-10 6.9E-15 97.8 12.3 137 184-350 42-213 (248)
90 PRK11805 N5-glutamine S-adenos 99.2 7.8E-10 1.7E-14 100.3 15.1 95 187-282 134-261 (307)
91 PF12147 Methyltransf_20: Puta 99.2 2.2E-09 4.8E-14 93.4 16.8 155 185-349 134-311 (311)
92 PRK11088 rrmA 23S rRNA methylt 99.2 2.5E-10 5.4E-15 102.3 10.8 89 186-284 85-181 (272)
93 PRK13942 protein-L-isoaspartat 99.1 3.4E-10 7.5E-15 97.4 10.7 99 174-283 66-175 (212)
94 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.2E-10 2.5E-15 99.0 7.6 97 186-284 16-132 (194)
95 PRK00377 cbiT cobalt-precorrin 99.1 7.1E-10 1.5E-14 94.5 12.3 97 178-282 34-143 (198)
96 PRK11188 rrmJ 23S rRNA methylt 99.1 1E-09 2.2E-14 94.2 12.7 96 184-284 49-165 (209)
97 PHA03411 putative methyltransf 99.1 1E-09 2.2E-14 96.0 12.3 123 186-331 64-208 (279)
98 TIGR00080 pimt protein-L-isoas 99.1 6.2E-10 1.3E-14 96.2 10.9 99 174-283 67-176 (215)
99 KOG1271 Methyltransferases [Ge 99.1 7.4E-10 1.6E-14 89.2 9.9 123 187-339 68-207 (227)
100 TIGR00406 prmA ribosomal prote 99.1 1.5E-09 3.2E-14 97.9 13.2 118 185-338 158-284 (288)
101 PRK13256 thiopurine S-methyltr 99.1 2.4E-09 5.3E-14 91.9 13.6 101 184-287 41-166 (226)
102 PF05724 TPMT: Thiopurine S-me 99.1 9.6E-10 2.1E-14 94.5 11.0 133 184-337 35-190 (218)
103 PRK01544 bifunctional N5-gluta 99.1 1.8E-09 3.9E-14 104.5 14.1 132 186-347 138-304 (506)
104 PRK14967 putative methyltransf 99.1 5E-09 1.1E-13 91.0 14.7 102 184-287 34-162 (223)
105 PRK07402 precorrin-6B methylas 99.0 1.7E-09 3.8E-14 92.0 11.0 101 176-285 32-143 (196)
106 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.2E-09 2.6E-14 100.6 10.4 107 176-286 114-237 (390)
107 PRK04457 spermidine synthase; 99.0 5.9E-10 1.3E-14 98.9 7.9 97 185-283 65-176 (262)
108 cd02440 AdoMet_MTases S-adenos 99.0 1.5E-09 3.3E-14 81.4 8.3 92 189-283 1-103 (107)
109 PF13659 Methyltransf_26: Meth 99.0 4.3E-10 9.2E-15 87.3 5.1 96 187-284 1-115 (117)
110 COG2264 PrmA Ribosomal protein 99.0 9.6E-09 2.1E-13 91.1 13.9 128 175-340 154-291 (300)
111 TIGR03704 PrmC_rel_meth putati 99.0 1.2E-08 2.5E-13 90.1 14.4 122 186-337 86-240 (251)
112 KOG2899 Predicted methyltransf 99.0 2.2E-09 4.9E-14 90.4 8.6 151 175-333 47-253 (288)
113 PF05148 Methyltransf_8: Hypot 99.0 1.8E-08 3.9E-13 83.9 13.4 159 149-349 32-197 (219)
114 COG2519 GCD14 tRNA(1-methylade 99.0 7.6E-09 1.6E-13 88.6 11.2 104 174-287 84-198 (256)
115 PF06325 PrmA: Ribosomal prote 99.0 1.1E-08 2.3E-13 91.6 12.6 126 185-349 160-294 (295)
116 PRK00312 pcm protein-L-isoaspa 98.9 5.6E-09 1.2E-13 90.0 10.3 97 175-284 69-175 (212)
117 TIGR00438 rrmJ cell division p 98.9 6.5E-09 1.4E-13 87.8 10.0 95 184-283 30-145 (188)
118 PRK01581 speE spermidine synth 98.9 2.2E-08 4.7E-13 91.1 13.8 98 185-283 149-267 (374)
119 PRK10611 chemotaxis methyltran 98.9 1.6E-08 3.6E-13 90.1 12.6 97 186-283 115-261 (287)
120 PF04672 Methyltransf_19: S-ad 98.9 3.4E-09 7.4E-14 92.2 7.9 141 186-334 68-233 (267)
121 COG4976 Predicted methyltransf 98.9 3.5E-09 7.6E-14 88.5 7.2 147 172-338 113-266 (287)
122 COG2890 HemK Methylase of poly 98.9 6.1E-08 1.3E-12 86.7 15.6 130 189-348 113-275 (280)
123 TIGR01177 conserved hypothetic 98.9 1E-08 2.2E-13 94.4 10.8 128 174-338 172-316 (329)
124 PRK00811 spermidine synthase; 98.9 5.4E-09 1.2E-13 93.9 8.5 97 185-282 75-189 (283)
125 PF01739 CheR: CheR methyltran 98.9 4.2E-09 9.1E-14 88.8 6.9 98 185-283 30-174 (196)
126 PF05219 DREV: DREV methyltran 98.9 2.6E-08 5.6E-13 85.8 10.8 147 186-339 94-242 (265)
127 KOG3045 Predicted RNA methylas 98.8 1E-07 2.2E-12 81.3 13.4 158 148-349 139-303 (325)
128 COG2518 Pcm Protein-L-isoaspar 98.8 3.1E-08 6.7E-13 83.0 10.2 100 173-285 61-170 (209)
129 PF08704 GCD14: tRNA methyltra 98.8 1.7E-08 3.6E-13 87.9 9.0 126 175-338 31-172 (247)
130 PRK13943 protein-L-isoaspartat 98.8 2.3E-08 4.9E-13 90.9 9.4 99 175-284 71-180 (322)
131 COG1352 CheR Methylase of chem 98.8 7.6E-08 1.6E-12 84.7 12.3 96 186-282 96-239 (268)
132 smart00650 rADc Ribosomal RNA 98.8 2.4E-08 5.1E-13 82.9 8.7 101 174-282 3-111 (169)
133 PLN02366 spermidine synthase 98.8 3.4E-08 7.3E-13 89.3 10.1 97 185-282 90-204 (308)
134 PF01135 PCMT: Protein-L-isoas 98.7 1.4E-08 3E-13 86.6 5.9 101 173-284 61-172 (209)
135 TIGR00417 speE spermidine synt 98.7 3.3E-08 7.2E-13 88.3 8.4 98 185-283 71-185 (270)
136 PRK03612 spermidine synthase; 98.7 6.5E-08 1.4E-12 94.2 11.0 97 185-283 296-414 (521)
137 KOG3010 Methyltransferase [Gen 98.7 3.9E-08 8.5E-13 83.1 7.2 96 186-286 33-139 (261)
138 PRK10901 16S rRNA methyltransf 98.7 1.1E-07 2.3E-12 90.6 10.7 111 174-287 234-375 (427)
139 PLN02672 methionine S-methyltr 98.7 2.1E-07 4.6E-12 96.0 13.1 122 187-338 119-304 (1082)
140 PF03291 Pox_MCEL: mRNA cappin 98.7 7.7E-08 1.7E-12 87.8 8.8 151 186-338 62-268 (331)
141 PLN02781 Probable caffeoyl-CoA 98.7 1E-07 2.2E-12 83.3 9.0 97 184-286 66-180 (234)
142 TIGR00563 rsmB ribosomal RNA s 98.6 1.2E-07 2.7E-12 90.3 9.6 113 174-289 228-373 (426)
143 PHA03412 putative methyltransf 98.6 1.6E-07 3.5E-12 80.5 8.7 91 187-278 50-157 (241)
144 PF08100 Dimerisation: Dimeris 98.6 2.5E-08 5.5E-13 64.0 2.7 49 25-73 1-51 (51)
145 PRK14904 16S rRNA methyltransf 98.6 2.1E-07 4.6E-12 89.1 10.4 104 184-288 248-381 (445)
146 PF11968 DUF3321: Putative met 98.6 8.9E-07 1.9E-11 74.4 12.0 122 186-340 51-184 (219)
147 PRK14902 16S rRNA methyltransf 98.6 3E-07 6.4E-12 88.2 10.5 109 176-287 242-382 (444)
148 KOG1975 mRNA cap methyltransfe 98.6 1.9E-07 4.2E-12 82.1 7.5 96 185-282 116-235 (389)
149 PRK14901 16S rRNA methyltransf 98.6 3.5E-07 7.6E-12 87.3 10.0 109 176-287 244-387 (434)
150 PF10294 Methyltransf_16: Puta 98.5 4.1E-07 9E-12 75.6 8.9 101 184-287 43-159 (173)
151 PF02390 Methyltransf_4: Putat 98.5 2.8E-07 6.2E-12 78.0 7.7 97 187-285 18-134 (195)
152 COG3963 Phospholipid N-methylt 98.5 1.1E-06 2.3E-11 70.3 10.0 114 170-286 34-158 (194)
153 TIGR00446 nop2p NOL1/NOP2/sun 98.5 6.2E-07 1.3E-11 79.8 9.9 104 184-288 69-203 (264)
154 PRK14903 16S rRNA methyltransf 98.5 5.4E-07 1.2E-11 85.7 9.8 105 184-289 235-371 (431)
155 PF08123 DOT1: Histone methyla 98.5 2.9E-07 6.3E-12 78.2 6.8 110 175-290 33-164 (205)
156 PRK14896 ksgA 16S ribosomal RN 98.5 7.3E-07 1.6E-11 79.1 9.1 82 173-259 18-105 (258)
157 TIGR00755 ksgA dimethyladenosi 98.5 7.7E-07 1.7E-11 78.8 8.9 91 173-271 18-116 (253)
158 PRK11727 23S rRNA mA1618 methy 98.5 1.1E-06 2.4E-11 79.6 9.8 144 186-338 114-293 (321)
159 PRK00274 ksgA 16S ribosomal RN 98.4 9.6E-07 2.1E-11 79.0 8.2 80 174-258 32-118 (272)
160 KOG1661 Protein-L-isoaspartate 98.4 7.6E-07 1.6E-11 73.8 6.6 98 176-282 72-191 (237)
161 PF05185 PRMT5: PRMT5 arginine 98.4 1E-06 2.2E-11 83.8 8.0 128 146-281 151-294 (448)
162 PLN02476 O-methyltransferase 98.4 1.3E-06 2.9E-11 77.3 8.2 97 184-286 116-230 (278)
163 KOG1541 Predicted protein carb 98.4 1E-06 2.2E-11 73.6 6.8 93 186-282 50-158 (270)
164 PF01596 Methyltransf_3: O-met 98.3 3E-07 6.5E-12 78.2 3.2 94 185-284 44-155 (205)
165 PLN02823 spermine synthase 98.3 1.7E-06 3.7E-11 79.1 8.3 96 185-282 102-218 (336)
166 PRK13168 rumA 23S rRNA m(5)U19 98.3 1.6E-06 3.5E-11 83.1 8.4 100 173-283 286-399 (443)
167 COG4122 Predicted O-methyltran 98.3 2.1E-06 4.5E-11 73.2 7.9 99 184-289 57-170 (219)
168 KOG1500 Protein arginine N-met 98.3 1.7E-06 3.7E-11 76.5 7.3 95 186-282 177-280 (517)
169 PTZ00338 dimethyladenosine tra 98.3 2.6E-06 5.7E-11 76.7 8.7 88 174-266 26-122 (294)
170 PRK04148 hypothetical protein; 98.3 8.9E-06 1.9E-10 63.7 9.8 95 176-283 8-108 (134)
171 PRK15128 23S rRNA m(5)C1962 me 98.2 5.9E-06 1.3E-10 77.5 9.9 96 186-284 220-339 (396)
172 PRK10909 rsmD 16S rRNA m(2)G96 98.2 4E-06 8.7E-11 71.1 7.9 92 186-282 53-157 (199)
173 COG0421 SpeE Spermidine syntha 98.2 5E-06 1.1E-10 74.0 8.8 96 186-283 76-189 (282)
174 PRK03522 rumB 23S rRNA methylu 98.2 1E-05 2.2E-10 74.1 10.6 64 186-251 173-247 (315)
175 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 2E-06 4.4E-11 75.2 5.6 160 174-349 44-256 (256)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.2 4.3E-06 9.3E-11 84.5 8.0 96 186-283 538-655 (702)
177 KOG1331 Predicted methyltransf 98.2 3.6E-06 7.8E-11 73.3 6.3 97 186-287 45-146 (293)
178 PF09243 Rsm22: Mitochondrial 98.2 8.2E-06 1.8E-10 72.9 8.9 102 186-290 33-145 (274)
179 PLN02589 caffeoyl-CoA O-methyl 98.2 7E-06 1.5E-10 71.8 7.6 97 184-287 77-192 (247)
180 KOG1499 Protein arginine N-met 98.1 4.3E-06 9.2E-11 75.0 6.2 96 185-282 59-165 (346)
181 COG0220 Predicted S-adenosylme 98.1 1.1E-05 2.3E-10 69.6 8.5 96 187-284 49-164 (227)
182 TIGR00478 tly hemolysin TlyA f 98.1 7.2E-05 1.6E-09 64.7 13.3 143 175-339 65-219 (228)
183 KOG2940 Predicted methyltransf 98.1 5.5E-06 1.2E-10 69.6 5.7 141 185-335 71-225 (325)
184 KOG3191 Predicted N6-DNA-methy 98.1 0.00017 3.7E-09 58.7 13.9 121 187-336 44-192 (209)
185 PRK00536 speE spermidine synth 98.1 1.8E-05 4E-10 69.6 9.1 88 184-282 70-169 (262)
186 PF01564 Spermine_synth: Sperm 98.0 8.8E-06 1.9E-10 71.5 6.1 100 184-284 74-191 (246)
187 PF04816 DUF633: Family of unk 98.0 4.8E-05 1E-09 64.7 10.3 125 190-349 1-139 (205)
188 PF03141 Methyltransf_29: Puta 98.0 2.1E-06 4.7E-11 80.4 1.8 99 185-288 116-223 (506)
189 TIGR03439 methyl_EasF probable 98.0 5.1E-05 1.1E-09 68.9 10.6 104 174-282 68-195 (319)
190 KOG2904 Predicted methyltransf 98.0 5E-05 1.1E-09 65.7 9.5 96 186-282 148-283 (328)
191 COG2263 Predicted RNA methylas 98.0 1.5E-05 3.3E-10 65.3 6.0 116 185-335 44-166 (198)
192 PRK01544 bifunctional N5-gluta 98.0 1.9E-05 4.2E-10 76.6 7.5 98 185-284 346-462 (506)
193 PF02527 GidB: rRNA small subu 98.0 2.5E-05 5.4E-10 65.3 7.1 88 189-283 51-147 (184)
194 KOG0820 Ribosomal RNA adenine 98.0 2.2E-05 4.8E-10 67.8 6.8 74 173-250 47-129 (315)
195 TIGR00479 rumA 23S rRNA (uraci 97.9 1.5E-05 3.3E-10 76.2 6.1 90 184-282 290-394 (431)
196 COG0357 GidB Predicted S-adeno 97.9 0.00013 2.9E-09 62.0 11.0 119 187-338 68-196 (215)
197 COG2521 Predicted archaeal met 97.9 9.7E-05 2.1E-09 62.5 9.9 127 184-338 132-278 (287)
198 TIGR00095 RNA methyltransferas 97.9 2.9E-05 6.2E-10 65.5 5.9 96 186-287 49-161 (189)
199 TIGR02085 meth_trns_rumB 23S r 97.9 3.4E-05 7.4E-10 72.2 6.9 89 186-283 233-333 (374)
200 KOG3201 Uncharacterized conser 97.8 1.1E-05 2.4E-10 64.1 2.8 94 186-282 29-138 (201)
201 COG0030 KsgA Dimethyladenosine 97.8 8.9E-05 1.9E-09 64.8 8.4 91 173-267 19-117 (259)
202 PRK00050 16S rRNA m(4)C1402 me 97.8 5.1E-05 1.1E-09 68.0 6.2 78 172-251 7-97 (296)
203 PF07942 N2227: N2227-like pro 97.8 0.00062 1.3E-08 60.1 12.7 135 185-337 55-242 (270)
204 KOG2915 tRNA(1-methyladenosine 97.7 0.00052 1.1E-08 59.5 11.6 99 174-282 95-208 (314)
205 KOG3987 Uncharacterized conser 97.7 2.2E-05 4.7E-10 65.0 2.3 146 185-339 111-262 (288)
206 PF03059 NAS: Nicotianamine sy 97.6 0.00022 4.8E-09 63.1 8.2 96 186-283 120-229 (276)
207 PRK04338 N(2),N(2)-dimethylgua 97.6 0.0001 2.2E-09 68.9 6.2 90 187-283 58-157 (382)
208 KOG3115 Methyltransferase-like 97.6 7.2E-05 1.6E-09 61.8 4.5 101 186-287 60-186 (249)
209 COG4798 Predicted methyltransf 97.6 0.00075 1.6E-08 55.6 10.0 138 184-336 46-204 (238)
210 PF09339 HTH_IclR: IclR helix- 97.6 3.4E-05 7.4E-10 50.3 1.9 47 33-82 6-52 (52)
211 PF02475 Met_10: Met-10+ like- 97.6 4.9E-05 1.1E-09 64.3 3.0 90 184-280 99-198 (200)
212 COG0293 FtsJ 23S rRNA methylas 97.5 0.00085 1.9E-08 56.4 9.9 106 173-284 33-159 (205)
213 KOG2798 Putative trehalase [Ca 97.5 0.0018 3.9E-08 57.4 11.6 138 186-338 150-338 (369)
214 TIGR02143 trmA_only tRNA (urac 97.5 9.1E-05 2E-09 68.8 3.7 51 188-240 199-256 (353)
215 PRK11933 yebU rRNA (cytosine-C 97.4 0.00075 1.6E-08 64.7 9.3 102 184-286 111-244 (470)
216 PF01728 FtsJ: FtsJ-like methy 97.4 0.00026 5.5E-09 59.3 5.4 104 174-282 10-137 (181)
217 KOG1709 Guanidinoacetate methy 97.4 0.0013 2.9E-08 55.0 9.2 100 185-287 100-209 (271)
218 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00044 9.6E-09 61.5 7.0 95 172-274 18-122 (262)
219 COG4262 Predicted spermidine s 97.4 0.001 2.2E-08 60.0 8.7 92 185-283 288-406 (508)
220 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00015 3.3E-09 67.5 3.6 51 188-240 208-265 (362)
221 smart00550 Zalpha Z-DNA-bindin 97.3 0.0004 8.6E-09 48.0 4.5 59 31-96 7-66 (68)
222 PF01170 UPF0020: Putative RNA 97.3 0.00072 1.6E-08 56.5 6.7 92 184-277 26-144 (179)
223 COG5459 Predicted rRNA methyla 97.3 0.00023 5E-09 63.8 3.9 101 187-288 114-229 (484)
224 COG1889 NOP1 Fibrillarin-like 97.3 0.012 2.6E-07 49.0 13.5 141 184-349 74-229 (231)
225 COG3897 Predicted methyltransf 97.3 0.0024 5.2E-08 52.8 9.1 102 184-289 77-184 (218)
226 PF01269 Fibrillarin: Fibrilla 97.3 0.0038 8.1E-08 53.1 10.4 141 184-348 71-226 (229)
227 KOG1269 SAM-dependent methyltr 97.2 0.00048 1E-08 63.6 4.9 104 184-291 108-222 (364)
228 COG0500 SmtA SAM-dependent met 97.2 0.0029 6.3E-08 50.9 8.9 96 190-290 52-161 (257)
229 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0027 5.9E-08 56.3 9.2 145 185-335 80-248 (260)
230 COG4076 Predicted RNA methylas 97.1 0.00077 1.7E-08 55.2 5.0 95 188-285 34-136 (252)
231 smart00346 HTH_ICLR helix_turn 97.1 0.00066 1.4E-08 49.8 4.3 58 33-98 8-65 (91)
232 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.00094 2E-08 61.0 6.2 100 184-284 44-183 (311)
233 COG2384 Predicted SAM-dependen 97.1 0.013 2.7E-07 49.7 12.2 118 186-338 16-144 (226)
234 PF13679 Methyltransf_32: Meth 97.1 0.0014 3E-08 52.5 6.4 76 184-259 23-114 (141)
235 PRK11760 putative 23S rRNA C24 97.1 0.003 6.6E-08 57.3 8.8 85 184-277 209-296 (357)
236 KOG3420 Predicted RNA methylas 97.1 0.00092 2E-08 52.4 4.6 67 185-252 47-122 (185)
237 COG1189 Predicted rRNA methyla 97.1 0.013 2.7E-07 50.3 11.7 149 175-339 69-226 (245)
238 PF12840 HTH_20: Helix-turn-he 97.0 0.00056 1.2E-08 46.1 2.3 55 24-82 4-58 (61)
239 PF11312 DUF3115: Protein of u 96.9 0.0015 3.3E-08 58.3 5.5 100 187-287 87-245 (315)
240 PF09445 Methyltransf_15: RNA 96.9 0.00044 9.5E-09 56.3 2.0 61 189-251 2-76 (163)
241 TIGR02987 met_A_Alw26 type II 96.9 0.0031 6.7E-08 62.0 7.6 66 186-251 31-119 (524)
242 KOG2918 Carboxymethyl transfer 96.9 0.014 3E-07 51.9 10.7 147 184-338 85-278 (335)
243 PF07091 FmrO: Ribosomal RNA m 96.8 0.0021 4.5E-08 55.7 5.2 130 184-334 103-241 (251)
244 KOG4589 Cell division protein 96.8 0.0076 1.6E-07 49.5 7.7 102 175-282 59-182 (232)
245 COG1414 IclR Transcriptional r 96.8 0.0017 3.6E-08 57.2 4.4 59 33-99 7-65 (246)
246 PF02082 Rrf2: Transcriptional 96.6 0.0022 4.9E-08 46.2 3.6 48 44-98 24-71 (83)
247 PF01022 HTH_5: Bacterial regu 96.6 0.0016 3.4E-08 41.4 2.3 44 32-80 4-47 (47)
248 PRK11569 transcriptional repre 96.6 0.0027 5.8E-08 56.9 4.6 60 33-100 31-90 (274)
249 PF13578 Methyltransf_24: Meth 96.6 0.0011 2.4E-08 50.1 1.8 90 191-284 1-105 (106)
250 PF01978 TrmB: Sugar-specific 96.6 0.00082 1.8E-08 46.4 1.0 48 31-82 9-56 (68)
251 TIGR01444 fkbM_fam methyltrans 96.6 0.0032 6.9E-08 50.3 4.3 52 189-240 1-59 (143)
252 TIGR02431 pcaR_pcaU beta-ketoa 96.5 0.0028 6.1E-08 55.9 4.3 59 33-101 12-70 (248)
253 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.016 3.5E-07 58.9 10.1 112 172-285 177-348 (702)
254 PRK10163 DNA-binding transcrip 96.5 0.0032 7E-08 56.3 4.6 59 33-99 28-86 (271)
255 COG2520 Predicted methyltransf 96.5 0.0065 1.4E-07 55.5 6.2 98 185-290 187-295 (341)
256 cd00092 HTH_CRP helix_turn_hel 96.5 0.012 2.5E-07 40.2 6.1 44 44-96 24-67 (67)
257 PF13463 HTH_27: Winged helix 96.4 0.0042 9.1E-08 42.7 3.6 60 35-97 8-67 (68)
258 PF13412 HTH_24: Winged helix- 96.4 0.0036 7.7E-08 39.8 2.9 45 31-79 4-48 (48)
259 COG3315 O-Methyltransferase in 96.4 0.022 4.8E-07 51.4 9.0 150 185-336 91-263 (297)
260 PRK09834 DNA-binding transcrip 96.4 0.0046 9.9E-08 55.1 4.5 61 33-101 14-74 (263)
261 COG1092 Predicted SAM-dependen 96.3 0.006 1.3E-07 56.9 5.4 97 186-284 217-336 (393)
262 PRK15090 DNA-binding transcrip 96.3 0.0047 1E-07 54.8 4.5 58 33-99 17-74 (257)
263 smart00419 HTH_CRP helix_turn_ 96.3 0.0073 1.6E-07 38.1 3.9 42 44-95 7-48 (48)
264 PF03602 Cons_hypoth95: Conser 96.2 0.0034 7.3E-08 52.6 2.9 98 186-288 42-156 (183)
265 PF14947 HTH_45: Winged helix- 96.2 0.0057 1.2E-07 43.3 3.6 56 35-102 11-66 (77)
266 PRK10857 DNA-binding transcrip 96.2 0.01 2.2E-07 48.7 5.5 47 44-97 24-70 (164)
267 KOG1663 O-methyltransferase [S 96.2 0.027 5.9E-07 48.0 8.1 100 184-289 71-188 (237)
268 TIGR00308 TRM1 tRNA(guanine-26 96.2 0.0093 2E-07 55.7 5.7 91 187-284 45-147 (374)
269 PLN02668 indole-3-acetate carb 96.1 0.23 5E-06 46.4 14.5 103 186-289 63-242 (386)
270 PF13601 HTH_34: Winged helix 96.1 0.0028 6E-08 45.3 1.4 65 31-99 1-66 (80)
271 PF04703 FaeA: FaeA-like prote 96.1 0.0097 2.1E-07 40.0 3.9 46 34-82 4-49 (62)
272 PF08220 HTH_DeoR: DeoR-like h 96.1 0.0098 2.1E-07 39.4 3.9 45 34-82 4-48 (57)
273 PF08461 HTH_12: Ribonuclease 96.1 0.0077 1.7E-07 41.2 3.4 59 35-99 3-63 (66)
274 PF09012 FeoC: FeoC like trans 96.0 0.0054 1.2E-07 42.4 2.6 44 35-82 5-48 (69)
275 PRK10141 DNA-binding transcrip 96.0 0.0095 2.1E-07 45.7 4.0 58 21-82 7-64 (117)
276 COG2265 TrmA SAM-dependent met 95.9 0.019 4.1E-07 54.6 6.4 99 173-282 282-394 (432)
277 COG3355 Predicted transcriptio 95.9 0.012 2.5E-07 45.5 4.0 48 32-83 29-77 (126)
278 COG1041 Predicted DNA modifica 95.8 0.099 2.2E-06 47.7 10.4 98 184-284 195-310 (347)
279 TIGR02337 HpaR homoprotocatech 95.7 0.037 8.1E-07 42.6 6.5 69 30-102 28-96 (118)
280 PF03141 Methyltransf_29: Puta 95.7 0.035 7.6E-07 52.8 7.3 131 184-349 363-506 (506)
281 COG4301 Uncharacterized conser 95.6 0.083 1.8E-06 45.5 8.5 99 184-283 76-192 (321)
282 KOG2793 Putative N2,N2-dimethy 95.6 0.059 1.3E-06 47.0 7.9 98 186-287 86-202 (248)
283 smart00347 HTH_MARR helix_turn 95.6 0.025 5.4E-07 41.8 4.9 67 32-102 12-78 (101)
284 PF01861 DUF43: Protein of unk 95.5 0.4 8.7E-06 41.5 12.4 121 186-337 44-178 (243)
285 TIGR00006 S-adenosyl-methyltra 95.5 0.037 7.9E-07 50.0 6.4 77 172-250 8-98 (305)
286 PF07757 AdoMet_MTase: Predict 95.5 0.022 4.8E-07 42.5 4.1 32 185-218 57-88 (112)
287 COG4627 Uncharacterized protei 95.5 0.0052 1.1E-07 48.8 0.7 54 231-285 31-87 (185)
288 COG1959 Predicted transcriptio 95.4 0.02 4.3E-07 46.2 4.1 49 44-99 24-72 (150)
289 COG0116 Predicted N6-adenine-s 95.4 0.15 3.3E-06 47.1 10.1 105 174-282 181-342 (381)
290 PRK03902 manganese transport t 95.4 0.029 6.4E-07 44.8 4.9 50 44-102 21-70 (142)
291 PF10672 Methyltrans_SAM: S-ad 95.4 0.025 5.3E-07 50.7 4.8 95 186-282 123-236 (286)
292 KOG4058 Uncharacterized conser 95.3 0.044 9.6E-07 43.3 5.4 104 175-287 63-175 (199)
293 PF12802 MarR_2: MarR family; 95.3 0.013 2.8E-07 39.3 2.2 47 32-82 7-55 (62)
294 PHA00738 putative HTH transcri 95.3 0.026 5.7E-07 42.0 3.8 48 31-82 13-60 (108)
295 TIGR02010 IscR iron-sulfur clu 95.2 0.027 5.8E-07 44.7 4.1 48 44-98 24-71 (135)
296 PRK11920 rirA iron-responsive 95.2 0.036 7.9E-07 44.9 4.9 48 44-98 23-70 (153)
297 COG0742 N6-adenine-specific me 95.2 0.11 2.5E-06 43.1 7.8 95 186-282 43-152 (187)
298 PF01047 MarR: MarR family; I 95.0 0.012 2.7E-07 39.0 1.5 46 33-82 6-51 (59)
299 KOG2352 Predicted spermine/spe 95.0 0.26 5.6E-06 46.9 10.3 96 188-286 50-163 (482)
300 KOG3924 Putative protein methy 94.8 0.072 1.6E-06 49.0 6.1 110 175-290 183-314 (419)
301 COG0144 Sun tRNA and rRNA cyto 94.8 0.27 5.8E-06 45.8 10.1 105 184-289 154-293 (355)
302 TIGR00738 rrf2_super rrf2 fami 94.8 0.036 7.9E-07 43.6 3.8 48 44-98 24-71 (132)
303 TIGR00122 birA_repr_reg BirA b 94.8 0.047 1E-06 37.6 3.9 55 33-98 3-57 (69)
304 PRK11512 DNA-binding transcrip 94.8 0.25 5.5E-06 39.5 8.7 67 32-102 42-108 (144)
305 PF04967 HTH_10: HTH DNA bindi 94.7 0.058 1.3E-06 35.0 3.9 43 23-72 5-47 (53)
306 TIGR02702 SufR_cyano iron-sulf 94.7 0.047 1E-06 46.5 4.5 66 33-102 4-71 (203)
307 PF08279 HTH_11: HTH domain; 94.7 0.053 1.1E-06 35.4 3.8 40 34-76 4-43 (55)
308 PF01795 Methyltransf_5: MraW 94.7 0.062 1.3E-06 48.5 5.3 67 172-240 8-80 (310)
309 smart00420 HTH_DEOR helix_turn 94.6 0.06 1.3E-06 34.5 3.9 44 35-82 5-48 (53)
310 COG1321 TroR Mn-dependent tran 94.6 0.065 1.4E-06 43.4 4.8 50 44-102 23-72 (154)
311 TIGR02944 suf_reg_Xantho FeS a 94.5 0.042 9.1E-07 43.2 3.5 46 44-96 24-69 (130)
312 PF01638 HxlR: HxlR-like helix 94.5 0.043 9.2E-07 40.1 3.3 63 35-102 10-73 (90)
313 PRK11050 manganese transport r 94.5 0.07 1.5E-06 43.2 4.8 58 35-102 42-99 (152)
314 PF04072 LCM: Leucine carboxyl 94.4 0.099 2.1E-06 43.8 5.8 84 186-269 78-182 (183)
315 cd07377 WHTH_GntR Winged helix 94.4 0.14 3.1E-06 34.4 5.6 34 46-82 26-59 (66)
316 COG4742 Predicted transcriptio 94.4 0.081 1.8E-06 46.3 5.2 67 24-102 7-73 (260)
317 PF03492 Methyltransf_7: SAM d 94.3 0.38 8.2E-06 44.4 9.8 148 184-332 14-248 (334)
318 TIGR01884 cas_HTH CRISPR locus 94.3 0.066 1.4E-06 45.6 4.5 58 32-97 145-202 (203)
319 PRK11014 transcriptional repre 94.2 0.077 1.7E-06 42.4 4.5 61 25-96 9-69 (141)
320 COG2345 Predicted transcriptio 94.2 0.054 1.2E-06 46.1 3.7 65 34-102 15-81 (218)
321 smart00345 HTH_GNTR helix_turn 94.1 0.1 2.2E-06 34.4 4.3 36 44-82 18-54 (60)
322 COG4190 Predicted transcriptio 94.1 0.076 1.6E-06 40.8 3.9 55 24-82 58-112 (144)
323 PRK06266 transcription initiat 94.1 0.11 2.4E-06 43.1 5.3 45 33-81 25-69 (178)
324 PF01726 LexA_DNA_bind: LexA D 94.1 0.057 1.2E-06 36.7 3.0 38 43-82 23-60 (65)
325 KOG2187 tRNA uracil-5-methyltr 94.1 0.061 1.3E-06 51.2 4.2 56 184-241 381-443 (534)
326 PRK03573 transcriptional regul 94.0 0.52 1.1E-05 37.6 9.0 66 34-102 35-100 (144)
327 PF06859 Bin3: Bicoid-interact 93.9 0.022 4.7E-07 42.8 0.7 87 245-339 2-94 (110)
328 PF05958 tRNA_U5-meth_tr: tRNA 93.8 0.059 1.3E-06 50.1 3.5 61 173-238 186-253 (352)
329 COG4189 Predicted transcriptio 93.7 0.098 2.1E-06 44.4 4.3 56 23-82 16-71 (308)
330 smart00344 HTH_ASNC helix_turn 93.3 0.087 1.9E-06 39.8 3.2 48 31-82 4-51 (108)
331 PF01325 Fe_dep_repress: Iron 93.2 0.11 2.4E-06 34.7 3.1 37 43-82 20-56 (60)
332 PF10354 DUF2431: Domain of un 93.2 1.2 2.5E-05 36.7 9.8 118 193-339 3-154 (166)
333 cd00090 HTH_ARSR Arsenical Res 93.2 0.15 3.3E-06 35.1 4.1 56 33-96 10-65 (78)
334 smart00418 HTH_ARSR helix_turn 92.9 0.2 4.2E-06 33.4 4.2 42 36-82 3-44 (66)
335 cd07153 Fur_like Ferric uptake 92.9 0.14 3E-06 39.3 3.8 51 32-82 3-55 (116)
336 smart00529 HTH_DTXR Helix-turn 92.8 0.17 3.6E-06 37.3 4.0 46 48-102 2-47 (96)
337 TIGR01889 Staph_reg_Sar staphy 92.8 0.19 4.2E-06 38.1 4.4 65 31-101 26-96 (109)
338 PF07109 Mg-por_mtran_C: Magne 92.8 0.42 9E-06 35.1 5.8 81 253-348 4-96 (97)
339 KOG0822 Protein kinase inhibit 92.7 0.86 1.9E-05 43.8 9.3 127 147-282 334-476 (649)
340 PF04989 CmcI: Cephalosporin h 92.7 0.34 7.5E-06 41.0 6.1 99 186-288 32-151 (206)
341 PRK10742 putative methyltransf 92.7 0.22 4.8E-06 43.4 5.1 72 175-250 77-170 (250)
342 TIGR01610 phage_O_Nterm phage 92.6 0.21 4.6E-06 36.8 4.3 44 44-95 46-89 (95)
343 PF05971 Methyltransf_10: Prot 92.6 0.26 5.7E-06 44.3 5.6 71 186-256 102-189 (299)
344 PF07381 DUF1495: Winged helix 92.5 0.24 5.3E-06 35.9 4.3 67 29-101 8-86 (90)
345 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.5 0.26 5.6E-06 44.4 5.5 103 184-287 83-222 (283)
346 PF00325 Crp: Bacterial regula 92.4 0.11 2.4E-06 29.7 1.9 31 45-78 2-32 (32)
347 PF14394 DUF4423: Domain of un 92.4 0.23 5.1E-06 41.0 4.6 46 46-100 40-87 (171)
348 KOG1562 Spermidine synthase [A 92.1 0.34 7.3E-06 43.1 5.4 99 184-284 119-236 (337)
349 PRK06474 hypothetical protein; 92.1 0.2 4.3E-06 41.7 3.9 73 24-99 5-80 (178)
350 PRK15431 ferrous iron transpor 92.0 0.24 5.3E-06 34.7 3.6 43 36-82 8-50 (78)
351 PRK14165 winged helix-turn-hel 92.0 0.28 6.1E-06 42.1 4.8 60 36-102 13-72 (217)
352 PF06163 DUF977: Bacterial pro 91.9 0.28 6.1E-06 37.6 4.2 51 28-82 10-60 (127)
353 COG1064 AdhP Zn-dependent alco 91.9 0.82 1.8E-05 41.9 7.9 93 184-287 164-262 (339)
354 COG1497 Predicted transcriptio 91.7 0.22 4.7E-06 42.7 3.7 59 35-102 15-74 (260)
355 KOG1099 SAM-dependent methyltr 91.7 0.7 1.5E-05 39.6 6.6 93 184-281 39-160 (294)
356 COG3432 Predicted transcriptio 91.7 0.11 2.4E-06 37.9 1.7 53 44-102 30-82 (95)
357 PF03514 GRAS: GRAS domain fam 91.6 0.86 1.9E-05 42.7 8.0 111 174-289 100-248 (374)
358 COG0275 Predicted S-adenosylme 91.5 0.52 1.1E-05 42.1 6.1 68 171-240 10-84 (314)
359 TIGR00373 conserved hypothetic 91.5 0.22 4.7E-06 40.6 3.5 46 33-82 17-62 (158)
360 COG2512 Predicted membrane-ass 91.5 0.16 3.5E-06 44.8 2.8 49 32-83 197-245 (258)
361 PHA02943 hypothetical protein; 91.3 0.32 6.9E-06 38.6 4.0 44 34-82 15-58 (165)
362 KOG2730 Methylase [General fun 90.9 0.11 2.5E-06 43.9 1.3 53 186-240 94-154 (263)
363 COG1378 Predicted transcriptio 90.9 0.39 8.5E-06 42.2 4.7 63 31-101 17-79 (247)
364 KOG1596 Fibrillarin and relate 90.8 1.3 2.8E-05 38.3 7.5 95 184-284 154-261 (317)
365 PF06962 rRNA_methylase: Putat 90.7 0.31 6.8E-06 38.6 3.5 104 212-338 1-126 (140)
366 PF11899 DUF3419: Protein of u 90.5 0.4 8.7E-06 44.9 4.7 61 228-289 274-339 (380)
367 PF13545 HTH_Crp_2: Crp-like h 90.3 0.36 7.8E-06 33.7 3.3 57 26-95 7-68 (76)
368 PF03444 HrcA_DNA-bdg: Winged 90.2 0.43 9.3E-06 33.5 3.5 48 43-98 21-69 (78)
369 PRK10870 transcriptional repre 90.1 0.54 1.2E-05 39.0 4.7 67 33-102 58-125 (176)
370 COG1733 Predicted transcriptio 89.9 1.3 2.8E-05 34.3 6.3 80 9-102 11-91 (120)
371 PF05430 Methyltransf_30: S-ad 89.9 0.43 9.3E-06 37.1 3.7 54 263-349 70-123 (124)
372 PRK13777 transcriptional regul 89.8 0.65 1.4E-05 38.8 5.0 66 33-102 48-113 (185)
373 PF10007 DUF2250: Uncharacteri 89.8 0.44 9.5E-06 34.8 3.4 47 32-82 9-55 (92)
374 PRK01747 mnmC bifunctional tRN 89.8 0.54 1.2E-05 47.8 5.4 96 185-281 56-203 (662)
375 PRK04172 pheS phenylalanyl-tRN 89.5 0.37 8E-06 47.0 3.8 65 31-103 7-71 (489)
376 PRK13509 transcriptional repre 89.3 0.47 1E-05 41.9 4.0 46 33-82 8-53 (251)
377 PRK11179 DNA-binding transcrip 89.1 0.46 1E-05 38.4 3.5 48 31-82 10-57 (153)
378 cd00315 Cyt_C5_DNA_methylase C 89.1 1.2 2.5E-05 39.9 6.5 123 189-335 2-141 (275)
379 PRK11169 leucine-responsive tr 89.1 0.46 1E-05 39.0 3.5 48 30-81 14-61 (164)
380 cd08283 FDH_like_1 Glutathione 89.0 3.6 7.7E-05 38.7 10.0 99 184-285 182-307 (386)
381 COG1846 MarR Transcriptional r 88.9 0.69 1.5E-05 35.3 4.3 71 28-102 20-90 (126)
382 COG4565 CitB Response regulato 88.7 0.54 1.2E-05 39.8 3.6 45 35-82 163-207 (224)
383 PRK10906 DNA-binding transcrip 88.7 0.45 9.7E-06 42.0 3.4 47 32-82 7-53 (252)
384 PF00392 GntR: Bacterial regul 88.5 1.1 2.4E-05 30.1 4.6 36 44-82 22-58 (64)
385 PLN02853 Probable phenylalanyl 88.4 0.52 1.1E-05 45.2 3.8 69 30-106 3-73 (492)
386 PRK09424 pntA NAD(P) transhydr 88.1 2.6 5.5E-05 41.2 8.3 95 185-285 163-286 (509)
387 COG1522 Lrp Transcriptional re 88.1 0.58 1.3E-05 37.7 3.5 48 31-82 9-56 (154)
388 COG1568 Predicted methyltransf 87.7 1.1 2.5E-05 39.4 5.1 202 47-282 36-258 (354)
389 PF02319 E2F_TDP: E2F/DP famil 87.7 0.22 4.8E-06 34.5 0.7 45 35-82 16-63 (71)
390 PF07789 DUF1627: Protein of u 87.4 0.94 2E-05 35.7 4.0 37 44-83 5-41 (155)
391 PRK04214 rbn ribonuclease BN/u 87.4 0.79 1.7E-05 43.7 4.4 44 43-95 308-351 (412)
392 TIGR02147 Fsuc_second hypothet 87.2 0.97 2.1E-05 40.3 4.6 47 44-99 136-184 (271)
393 KOG1501 Arginine N-methyltrans 87.1 0.68 1.5E-05 43.4 3.6 89 185-274 65-165 (636)
394 PF13730 HTH_36: Helix-turn-he 86.9 0.59 1.3E-05 30.3 2.4 29 47-78 27-55 (55)
395 TIGR00498 lexA SOS regulatory 86.6 0.88 1.9E-05 38.5 3.9 36 44-82 24-60 (199)
396 PF05584 Sulfolobus_pRN: Sulfo 86.6 1.1 2.5E-05 30.8 3.6 44 34-82 9-52 (72)
397 PF04182 B-block_TFIIIC: B-blo 86.5 0.72 1.6E-05 32.3 2.7 49 31-82 3-52 (75)
398 PRK09802 DNA-binding transcrip 86.5 0.8 1.7E-05 40.9 3.7 47 32-82 19-65 (269)
399 PTZ00326 phenylalanyl-tRNA syn 86.4 0.91 2E-05 43.8 4.2 70 30-106 6-76 (494)
400 KOG2920 Predicted methyltransf 86.3 0.72 1.6E-05 40.8 3.2 95 185-282 115-232 (282)
401 PRK10434 srlR DNA-bindng trans 86.0 0.74 1.6E-05 40.8 3.2 47 32-82 7-53 (256)
402 PF05732 RepL: Firmicute plasm 86.0 0.99 2.1E-05 37.0 3.7 46 45-99 75-120 (165)
403 PF02153 PDH: Prephenate dehyd 85.9 1 2.3E-05 39.9 4.1 75 200-281 1-76 (258)
404 PRK10411 DNA-binding transcrip 85.8 1.2 2.7E-05 38.9 4.5 45 34-82 8-52 (240)
405 COG1063 Tdh Threonine dehydrog 85.8 3 6.6E-05 38.7 7.4 94 187-289 169-274 (350)
406 COG1349 GlpR Transcriptional r 85.1 1 2.2E-05 39.9 3.6 46 33-82 8-53 (253)
407 PF02002 TFIIE_alpha: TFIIE al 84.8 0.5 1.1E-05 35.5 1.4 45 34-82 17-61 (105)
408 PF02636 Methyltransf_28: Puta 84.6 2.1 4.7E-05 37.7 5.5 35 187-221 19-62 (252)
409 PF12793 SgrR_N: Sugar transpo 84.3 1.3 2.7E-05 34.0 3.4 36 44-82 18-53 (115)
410 PF12324 HTH_15: Helix-turn-he 83.9 0.92 2E-05 31.7 2.2 35 35-73 29-63 (77)
411 COG1565 Uncharacterized conser 83.8 2.6 5.7E-05 38.8 5.7 63 155-223 52-123 (370)
412 PRK11886 bifunctional biotin-- 83.8 1.4 3.1E-05 40.3 4.2 56 33-98 7-63 (319)
413 PF01475 FUR: Ferric uptake re 83.6 0.78 1.7E-05 35.3 2.0 55 29-83 7-63 (120)
414 PF08784 RPA_C: Replication pr 83.6 0.86 1.9E-05 34.0 2.2 48 31-81 48-98 (102)
415 PF02295 z-alpha: Adenosine de 83.5 0.51 1.1E-05 32.2 0.8 60 31-96 5-64 (66)
416 PF11599 AviRa: RRNA methyltra 83.5 6.4 0.00014 33.6 7.4 100 184-284 49-214 (246)
417 PRK05638 threonine synthase; V 83.4 1.6 3.4E-05 42.1 4.4 63 32-101 373-437 (442)
418 COG3413 Predicted DNA binding 83.3 1.9 4.1E-05 37.0 4.5 44 22-72 159-202 (215)
419 PRK11639 zinc uptake transcrip 82.7 2.3 5.1E-05 35.0 4.6 54 29-82 25-80 (169)
420 KOG0024 Sorbitol dehydrogenase 82.5 8.2 0.00018 35.1 8.1 97 184-289 167-278 (354)
421 COG0287 TyrA Prephenate dehydr 82.4 6.9 0.00015 35.1 7.8 86 188-280 4-94 (279)
422 KOG2539 Mitochondrial/chloropl 82.3 3.1 6.7E-05 39.5 5.7 101 187-288 201-319 (491)
423 PF02796 HTH_7: Helix-turn-hel 82.2 1.1 2.3E-05 27.9 1.8 30 35-70 14-43 (45)
424 PF13384 HTH_23: Homeodomain-l 82.0 1 2.2E-05 28.5 1.8 40 32-77 7-46 (50)
425 PF04445 SAM_MT: Putative SAM- 81.8 1.9 4.1E-05 37.4 3.8 76 175-254 64-161 (234)
426 PF13404 HTH_AsnC-type: AsnC-t 81.2 1.7 3.7E-05 26.6 2.5 37 31-71 4-40 (42)
427 PF05206 TRM13: Methyltransfer 81.1 4.2 9E-05 36.0 5.8 37 184-220 16-57 (259)
428 TIGR01321 TrpR trp operon repr 81.1 1.8 4E-05 31.6 3.0 42 27-73 39-80 (94)
429 PRK07502 cyclohexadienyl dehyd 81.0 7.1 0.00015 35.4 7.6 90 187-282 6-98 (307)
430 PF13518 HTH_28: Helix-turn-he 81.0 1.8 3.9E-05 27.4 2.7 30 45-77 12-41 (52)
431 cd08237 ribitol-5-phosphate_DH 80.6 10 0.00022 34.9 8.6 94 184-285 161-257 (341)
432 PF03269 DUF268: Caenorhabditi 80.3 2 4.4E-05 34.8 3.2 100 187-290 2-117 (177)
433 PRK12423 LexA repressor; Provi 79.4 2.1 4.6E-05 36.4 3.4 36 45-82 25-60 (202)
434 PF08221 HTH_9: RNA polymerase 79.2 1.8 3.8E-05 29.1 2.2 43 35-81 18-60 (62)
435 COG0604 Qor NADPH:quinone redu 78.8 4.2 9.1E-05 37.4 5.4 95 184-288 140-245 (326)
436 PF05711 TylF: Macrocin-O-meth 78.6 3.3 7.1E-05 36.4 4.3 94 186-282 74-210 (248)
437 PRK10046 dpiA two-component re 78.5 2.4 5.3E-05 36.4 3.6 46 34-82 166-211 (225)
438 COG0735 Fur Fe2+/Zn2+ uptake r 78.1 2.5 5.5E-05 33.8 3.3 55 29-83 20-76 (145)
439 PRK11534 DNA-binding transcrip 78.0 3.4 7.4E-05 35.6 4.3 47 43-98 28-74 (224)
440 PRK04424 fatty acid biosynthes 77.8 1.2 2.6E-05 37.3 1.3 46 33-82 10-55 (185)
441 PRK11753 DNA-binding transcrip 77.5 3.1 6.8E-05 35.2 3.9 35 45-82 168-202 (211)
442 PF05331 DUF742: Protein of un 77.3 3.3 7.1E-05 31.6 3.5 42 35-82 48-89 (114)
443 PF09821 AAA_assoc_C: C-termin 77.3 4.6 0.0001 31.1 4.4 75 50-135 2-76 (120)
444 PRK10736 hypothetical protein; 77.3 3.6 7.9E-05 38.4 4.4 51 33-94 311-361 (374)
445 PF09681 Phage_rep_org_N: N-te 76.9 4.7 0.0001 31.2 4.3 49 44-101 52-100 (121)
446 PRK09334 30S ribosomal protein 76.8 2.7 5.8E-05 30.2 2.7 36 44-82 40-75 (86)
447 TIGR03879 near_KaiC_dom probab 76.6 2 4.3E-05 29.8 1.9 34 44-80 31-64 (73)
448 COG1510 Predicted transcriptio 76.6 2.4 5.3E-05 34.5 2.7 36 44-82 40-75 (177)
449 COG2524 Predicted transcriptio 76.6 3.8 8.3E-05 35.8 4.0 49 44-99 24-72 (294)
450 PRK09462 fur ferric uptake reg 76.3 3.5 7.7E-05 33.0 3.7 54 29-82 16-72 (148)
451 PF03374 ANT: Phage antirepres 76.1 4.9 0.00011 30.3 4.3 47 30-82 9-55 (111)
452 PHA02701 ORF020 dsRNA-binding 76.0 4.6 0.0001 33.4 4.2 49 31-82 5-53 (183)
453 COG1802 GntR Transcriptional r 76.0 4.2 9.1E-05 35.2 4.4 61 26-99 24-84 (230)
454 TIGR03697 NtcA_cyano global ni 76.0 3.7 8E-05 34.1 3.9 36 44-82 142-177 (193)
455 PF01210 NAD_Gly3P_dh_N: NAD-d 75.9 4 8.8E-05 33.0 4.0 87 189-282 1-101 (157)
456 TIGR03338 phnR_burk phosphonat 75.8 3 6.5E-05 35.5 3.4 47 43-98 32-78 (212)
457 COG5379 BtaA S-adenosylmethion 75.6 4.4 9.4E-05 36.2 4.2 58 228-286 306-368 (414)
458 COG1654 BirA Biotin operon rep 75.4 5.2 0.00011 28.3 3.8 55 35-99 11-65 (79)
459 TIGR00675 dcm DNA-methyltransf 74.9 11 0.00023 34.6 6.8 119 190-334 1-137 (315)
460 TIGR03433 padR_acidobact trans 74.8 9.7 0.00021 28.2 5.5 63 35-102 9-81 (100)
461 COG1255 Uncharacterized protei 73.9 37 0.00081 25.9 8.9 85 185-282 12-100 (129)
462 PRK11642 exoribonuclease R; Pr 73.8 4.7 0.0001 41.9 4.6 48 35-82 24-72 (813)
463 COG5631 Predicted transcriptio 73.7 12 0.00027 30.1 5.9 77 18-99 64-147 (199)
464 TIGR01202 bchC 2-desacetyl-2-h 73.6 19 0.00042 32.5 8.3 86 186-285 144-232 (308)
465 PRK11161 fumarate/nitrate redu 73.4 4.4 9.5E-05 35.0 3.8 35 45-82 184-218 (235)
466 PF14740 DUF4471: Domain of un 73.3 4.6 0.0001 36.2 3.9 80 228-334 199-286 (289)
467 COG1748 LYS9 Saccharopine dehy 73.3 17 0.00038 34.1 7.8 64 188-251 2-75 (389)
468 PRK09880 L-idonate 5-dehydroge 73.1 16 0.00035 33.6 7.7 92 185-285 168-267 (343)
469 PHA02591 hypothetical protein; 73.0 3.9 8.6E-05 28.4 2.6 31 36-71 52-82 (83)
470 cd01842 SGNH_hydrolase_like_5 72.8 6.5 0.00014 32.5 4.3 43 244-288 50-102 (183)
471 TIGR02787 codY_Gpos GTP-sensin 72.5 4.7 0.0001 34.9 3.6 46 34-82 187-232 (251)
472 PRK01381 Trp operon repressor; 72.3 4.8 0.0001 29.7 3.1 41 28-73 40-80 (99)
473 PRK05562 precorrin-2 dehydroge 72.3 25 0.00055 30.3 8.1 79 186-270 24-106 (223)
474 COG1675 TFA1 Transcription ini 71.8 4.7 0.0001 33.3 3.3 45 33-81 21-65 (176)
475 PF08280 HTH_Mga: M protein tr 71.8 2.6 5.6E-05 27.9 1.5 39 31-73 6-44 (59)
476 PRK00215 LexA repressor; Valid 71.6 6.2 0.00013 33.5 4.2 37 44-82 22-58 (205)
477 PRK09954 putative kinase; Prov 71.6 3.6 7.8E-05 38.4 3.0 44 32-79 5-48 (362)
478 smart00531 TFIIE Transcription 71.6 4.1 8.9E-05 32.7 3.0 41 34-78 5-45 (147)
479 COG3129 Predicted SAM-dependen 71.4 8.3 0.00018 33.3 4.8 71 186-256 78-165 (292)
480 PRK11414 colanic acid/biofilm 70.9 7.1 0.00015 33.5 4.5 37 43-82 32-68 (221)
481 COG0541 Ffh Signal recognition 70.9 15 0.00032 34.9 6.7 104 186-290 99-227 (451)
482 PF03686 UPF0146: Uncharacteri 70.1 14 0.00031 28.6 5.4 84 186-283 13-101 (127)
483 PRK13918 CRP/FNR family transc 70.1 5.9 0.00013 33.2 3.8 36 44-82 148-183 (202)
484 PF03297 Ribosomal_S25: S25 ri 70.1 4.4 9.5E-05 30.4 2.6 36 44-82 58-93 (105)
485 TIGR02698 CopY_TcrY copper tra 69.9 5.9 0.00013 31.0 3.4 47 32-82 6-56 (130)
486 PRK09775 putative DNA-binding 69.7 6 0.00013 38.0 4.1 41 35-82 5-45 (442)
487 PRK09391 fixK transcriptional 69.5 11 0.00023 32.6 5.4 36 44-82 178-213 (230)
488 PHA01634 hypothetical protein 69.3 5.1 0.00011 31.1 2.8 40 186-226 28-68 (156)
489 PF13460 NAD_binding_10: NADH( 69.2 60 0.0013 26.3 10.1 131 194-338 4-144 (183)
490 TIGR01714 phage_rep_org_N phag 69.2 8.6 0.00019 29.6 4.1 47 44-99 50-96 (119)
491 PRK10402 DNA-binding transcrip 68.9 5.8 0.00013 34.1 3.6 35 45-82 169-203 (226)
492 PF12692 Methyltransf_17: S-ad 68.8 30 0.00066 27.7 7.0 54 187-240 29-82 (160)
493 PF06969 HemN_C: HemN C-termin 68.8 6.1 0.00013 26.5 2.9 47 44-99 19-65 (66)
494 PRK06719 precorrin-2 dehydroge 68.7 44 0.00096 27.0 8.5 77 186-270 12-91 (157)
495 PF09106 SelB-wing_2: Elongati 68.6 7.3 0.00016 25.7 3.2 36 44-82 16-54 (59)
496 COG0286 HsdM Type I restrictio 68.1 26 0.00057 34.2 8.2 106 174-282 176-324 (489)
497 PF02254 TrkA_N: TrkA-N domain 68.0 4.9 0.00011 30.3 2.6 81 195-282 4-94 (116)
498 PRK13239 alkylmercury lyase; P 67.6 5.1 0.00011 34.0 2.8 36 34-73 26-61 (206)
499 COG0686 Ald Alanine dehydrogen 67.6 17 0.00036 33.0 6.0 97 187-289 168-271 (371)
500 PF01555 N6_N4_Mtase: DNA meth 67.5 6.1 0.00013 33.6 3.4 48 173-225 181-229 (231)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=306.52 Aligned_cols=334 Identities=39% Similarity=0.680 Sum_probs=291.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSS 84 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 84 (350)
..+...+++++++++..+++|++|+|||+||.|.++ ++ ..|+|..+. ..|..+.++.|+||.|++.+++...-..
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 345567899999999999999999999999999975 23 888888776 3444778999999999999999988621
Q ss_pred CCCCCCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHH
Q 018775 85 DGGDETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFND 163 (350)
Q Consensus 85 ~~~~~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 163 (350)
...|.+++.++++..++ ..+++.++.........+.|.++.++++.+..++..++|...++|...+......+++
T Consensus 80 ----~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 155 (342)
T KOG3178|consen 80 ----GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNG 155 (342)
T ss_pred ----ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHH
Confidence 12799999999666443 4688889888878889999999999999998888889997789999988888899999
Q ss_pred HHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCC-CCeEEEeccCCCCC
Q 018775 164 AMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC-EGIFHVGGDMFDAI 242 (350)
Q Consensus 164 ~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~ 242 (350)
+|...+......+++.+. ++++....||||||+|..+..++..||+++++.+|+|.+++.+... ..|+.+.+|++++.
T Consensus 156 sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~ 234 (342)
T KOG3178|consen 156 SMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT 234 (342)
T ss_pred HHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccC
Confidence 999888887777777666 4677899999999999999999999999999999999999998875 77999999999999
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-c-ccccchhhhhhHhhhcCCcccCCHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-I-FGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
|..|+||+.|+||||+|++++++|+|+++.|+ |||++++.|.+.++.... . .......+|+.|+..+.+|++|+..|
T Consensus 235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~-~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e 313 (342)
T KOG3178|consen 235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLP-PGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE 313 (342)
T ss_pred CCcCeEEEEeecccCChHHHHHHHHHHHHhCC-CCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence 99999999999999999999999999999999 999999999988863222 1 23345678889998887799999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++.++||.+..+.-.+..+++|+++|
T Consensus 314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 314 FQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999886
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=5.7e-40 Score=298.70 Aligned_cols=287 Identities=20% Similarity=0.355 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 22 ADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 22 ~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
....+|++|+++||||.|.+ +|.|++|||+++|+ +++.+++||++|+++|+|++++ ++|++|+.+..+
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~~-------~~y~~t~~~~~~ 69 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED-------GKWSLTEFADYM 69 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEecC-------CcEecchhHHhh
Confidence 35789999999999999987 79999999999999 8999999999999999999875 899999999844
Q ss_pred hcC-CCC---ChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHh-hhhhhhHHHH
Q 018775 102 LHD-SEL---SLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMA-CTAKIVMKAL 176 (350)
Q Consensus 102 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~ 176 (350)
..+ ++. +..+++.+.. ......|.+|.++++++ ++|...+ .+....+.. ..|...|. .........+
T Consensus 70 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~-~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 141 (306)
T TIGR02716 70 FSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQ-KNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLL 141 (306)
T ss_pred ccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcCC-ccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHH
Confidence 444 321 1122333221 12345689999999853 3443222 111112222 22333443 3333344567
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCCccEE
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPKADAV 248 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i 248 (350)
++.++ +++..+|||||||+|.+++.+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|++|+|
T Consensus 142 ~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 142 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 77777 78889999999999999999999999999999999888877653 5789999999997 67779999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH----hhhcCCcccCCHHHHHHH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM----FAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~e~~~l 324 (350)
++++++|+|+++++.++|++++++|+ |||+++|.|.+.++..... .....+..+ .... ...++.++|.++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~e~~~l 293 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPENPN---FDYLSHYILGAGMPFSV--LGFKEQARYKEI 293 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCch---hhHHHHHHHHccccccc--ccCCCHHHHHHH
Confidence 99999999999988999999999999 9999999999887654321 111222111 1111 123458999999
Q ss_pred HHhcCCceeEEE
Q 018775 325 LEQGGFHRCKII 336 (350)
Q Consensus 325 l~~aGf~~~~~~ 336 (350)
|+++||+.++++
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988764
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=3.3e-39 Score=284.15 Aligned_cols=234 Identities=35% Similarity=0.667 Sum_probs=204.0
Q ss_pred CCeEecChhchhhhcCCC-CChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhh
Q 018775 89 ETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMAC 167 (350)
Q Consensus 89 ~~~~~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 167 (350)
+++|++|+.|+.++.+++ .++..++.+......++.|.+|+++++++.++++..+|.++|+++.++++..+.|..+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 589999999997776654 5677777776677889999999999999999999999999999999999999999999999
Q ss_pred hhhhhH-HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCCCCcc
Q 018775 168 TAKIVM-KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKAD 246 (350)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~p~~D 246 (350)
...... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.||+++++|.+|
T Consensus 83 ~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 888777 77888888 788899999999999999999999999999999999999998889999999999999888899
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCC--ceEEEEeeeecCCCCCcccc-cchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGNNIFGD-MGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg--G~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
+|++.++||+|+++++..+|++++++|+ || |+|+|.|.+.++....+... ....+|+.|+..++ |++||.+||++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G~~rt~~e~~~ 238 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-GKERTEEEWEA 238 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-SS-EEHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-CCCcCHHHHHH
Confidence 9999999999999999999999999999 99 99999999999987663211 12578999999998 99999999999
Q ss_pred HHH
Q 018775 324 LLE 326 (350)
Q Consensus 324 ll~ 326 (350)
+|+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=7.2e-19 Score=150.99 Aligned_cols=160 Identities=19% Similarity=0.293 Sum_probs=124.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCC--ccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPK--ADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~--~D~i~~~~v 253 (350)
..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++ ...|+|+.+|+++ |+|+ ||+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34789999999999999999999999999999999 999998876 1239999999999 9985 999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh------------------HhhhcCCccc
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV------------------MFAHTTGGKE 315 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 315 (350)
|+++++. .+.|++++|+|| |||++++.|...+...... .....+.+. ++.... ...
T Consensus 129 lrnv~d~--~~aL~E~~RVlK-pgG~~~vle~~~p~~~~~~--~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi-~~~ 202 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLK-PGGRLLVLEFSKPDNPVLR--KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI-RRF 202 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhc-CCeEEEEEEcCCCCchhhH--HHHHHHHHHhHhhhhceeeecChHHHHHHHHHH-HhC
Confidence 9998876 478999999999 9999999999887664320 001111111 111111 123
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
.+.+++.++++++||..+...... |...+..++|
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 478999999999999999976664 4455666655
No 5
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.80 E-value=1.3e-19 Score=159.28 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=120.5
Q ss_pred CCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~v 253 (350)
.++.+|||||||+|..+..+++. +|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 46789999999999999999987 47899999999 899888764 3479999999998 7778999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-----------------hcCCcccC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-----------------HTTGGKER 316 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 316 (350)
+|++++++...++++++++|+ |||.+++.|.+..+..... .....+.... ..+.-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFRFEDTKIN----HLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcC-CCeEEEEeecccCCCHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999998888899999999999 9999999998765543220 1111111100 00112345
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEe
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAY 348 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 348 (350)
|.+++.++++++||+.+++..-...+.++.++
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 89999999999999987764443444444443
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=8.4e-20 Score=158.44 Aligned_cols=158 Identities=22% Similarity=0.348 Sum_probs=82.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCC--ccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPK--ADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~--~D~i~~~~ 252 (350)
..++.+|||||||+|..+..++++. |+.+++++|+ +.|++.+++ ..+|+++.+|..+ |+++ ||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5678899999999999999999874 6789999999 999998875 3589999999999 8874 99999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------hcCC------------c
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------HTTG------------G 313 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------~ 313 (350)
.||++++.+ +.|++++++|| |||+++|+|...+..... ..++.+.+.. ...+ .
T Consensus 125 glrn~~d~~--~~l~E~~RVLk-PGG~l~ile~~~p~~~~~-----~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~ 196 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLK-PGGRLVILEFSKPRNPLL-----RALYKFYFKYILPLIGRLLSGDREAYRYLPESIR 196 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEE-EEEEEEEEEEEB-SSHHH-----HHHHHH----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcC-CCeEEEEeeccCCCCchh-----hceeeeeecccccccccccccccccccccccccc
Confidence 999998754 68999999999 999999999988765311 1111111100 0110 1
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
...+.+++.++++++||+.++..++. |...+..+.|
T Consensus 197 ~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 197 RFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccCC
Confidence 12378999999999999999988874 4555666654
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=7.2e-18 Score=149.76 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=119.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44566666 7788999999999999999998765 679999999 888877664 4679999999987 665 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..+++|++.++...+|++++++|+ |||++++.+......... ...... ...... -...+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~----~~~~~~--~~~~~~-~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENW----DEEFKA--YIKKRK-YTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCc----HHHHHH--HHHhcC-CCCCCHHHHHHHH
Confidence 99999999999887677899999999999 999999998866543211 001111 111111 2345889999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||++++...+.
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999988764
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=5.9e-19 Score=155.61 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=113.7
Q ss_pred CCcceEEEecCCchHHHHHHHH--HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVK--SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~v 253 (350)
.++.+|||||||+|..+..+++ .+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4678999999999999999988 468999999999 999988764 3489999999988 6777999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh------------Hhhhc-CCcccCCHHH
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV------------MFAHT-TGGKERTEQE 320 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~s~~e 320 (350)
+|++++++...++++++++|+ |||.+++.|..................++. +.... +.-...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999 999999999776554322000000000000 00000 0012238899
Q ss_pred HHHHHHhcCCceeEEE
Q 018775 321 WMKLLEQGGFHRCKII 336 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~ 336 (350)
..++|+++||+.++++
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977653
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=2.4e-17 Score=146.25 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=118.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-CCCC--ccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-AIPK--ADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~p~--~D~i~ 249 (350)
..++.+|||||||+|.++..+++.+ |+.+++++|+ ++|++.+++ ..+++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5568899999999999999998875 6679999999 899987753 2479999999988 7763 99999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---HhhhcCC-----------ccc
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---MFAHTTG-----------GKE 315 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~ 315 (350)
+.+++|++++. ..+|++++++|+ |||++++.|...++...... .....+... .....+. ...
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLk-pGG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLK-PGSRVSILDFNKSTQPFTTS-MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcC-cCcEEEEEECCCCCcHHHHH-HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99999998865 578999999999 99999999987655321100 000000000 0000010 124
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC-ceeEEEEe
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA-LYSIIEAY 348 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 348 (350)
++.+++.++++++||+.++...+.+ ...+..|+
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 5899999999999999999888754 44555554
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.76 E-value=1.9e-17 Score=144.85 Aligned_cols=167 Identities=15% Similarity=0.216 Sum_probs=123.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
.+++.+. ..++.+|||+|||+|..+..+++.. |..+++++|+ +++++.+++ .++++++.+|..+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3445555 6678899999999999999999885 6789999999 888876653 3579999999987 555
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc-hhhh----------------hhH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG-LVFD----------------LVM 306 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~-~~~~----------------~~~ 306 (350)
.||+|++..++|++++. .++|+++.++|+ |||++++.+...+..... .... ..+. ...
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVK-PGGKVVCLETSQPTIPGF--KQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcC-cCeEEEEEECCCCCChHH--HHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 49999999999998765 478999999999 999999988654332110 0000 0000 000
Q ss_pred hhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 307 FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 307 ~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
..... ....+.+++.++|+++||+++++.+.. ++..++.++|
T Consensus 189 ~~~~~-~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQEST-RDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHH-HHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000 123478999999999999999999885 7788888887
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.74 E-value=8.6e-17 Score=148.11 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=111.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 679999999 888876653 3579999999988 665 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc--ccc-cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI--FGD-MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
+||+++. .+++++++++|+ |||+|++.+.......... ... ....++........ ....+.++|.++++++||
T Consensus 196 ~~h~~d~--~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-p~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYL-PAWCSTSDYVKLAESLGL 271 (340)
T ss_pred hhccCCH--HHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHCCC
Confidence 9998875 478999999999 9999999887654322110 000 00011111111111 123479999999999999
Q ss_pred ceeEEEEcC
Q 018775 331 HRCKIISMP 339 (350)
Q Consensus 331 ~~~~~~~~~ 339 (350)
.++++....
T Consensus 272 ~~v~~~d~s 280 (340)
T PLN02244 272 QDIKTEDWS 280 (340)
T ss_pred CeeEeeeCc
Confidence 999987653
No 12
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.1e-16 Score=139.78 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=132.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
.+.+++++. ++++.+|||||||.|.+++..++++ +++++++++ +++.+.+++ ..+|++.-.|+.+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 456778888 9999999999999999999999999 899999999 887776654 56899999999884445
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||-|++..+++|+..+.-..+++++++.|+ |||++++.....+..... ...++.....+++|..++.+++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~~~~~------~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPDQEFR------RFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCCcccc------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence 999999999999999888999999999999 999999988887775431 2234444445777888999999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
.+++||.+..+..++
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998876654
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.1e-16 Score=134.92 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=115.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC------CcEEEecc-hhHhhhCCC---------CCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH------IKGINFDL-PHVVATAPV---------CEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~ 238 (350)
-++..+. ...+.++|||+||||.++..+++.-+. .+++++|+ |+++..+++ ..++.++++|.
T Consensus 91 ~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 91 MFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 3444454 456799999999999999999998766 78999999 999887653 45699999999
Q ss_pred CC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-cccccchhhh-----------
Q 018775 239 FD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-IFGDMGLVFD----------- 303 (350)
Q Consensus 239 ~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-~~~~~~~~~~----------- 303 (350)
++ |+|+ ||.|++.+-+.++++.+ +.|++++|+|| |||++.+.|+..-+...- .+ -....++
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLK-pGGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iag 244 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLK-PGGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAG 244 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcC-CCcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhh
Confidence 99 9985 99999999999998864 77999999999 999999999766553211 00 0001111
Q ss_pred ----hhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 304 ----LVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 304 ----~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
..++...- .+..+.+++..+.++|||..+.
T Consensus 245 d~~sYqYLveSI-~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 245 DRKSYQYLVESI-RRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHhhhhhHHhhh-hcCCCHHHHHHHHHHcCCcccc
Confidence 11222111 2344789999999999999887
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=1.5e-16 Score=141.13 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=110.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C-CCCccEEEe
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A-IPKADAVFM 250 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~-~p~~D~i~~ 250 (350)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45666676 66789999999999999999999999999999999 899998874 468999999876 2 235999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc-c---chhhhhh--HhhhcCCcccCCHHHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD-M---GLVFDLV--MFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~~~~~~s~~e~~~l 324 (350)
+.++|++++. ..++++++++|+ |||++++............... . ..+.... +....+ ....+.+++.++
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVG-AVVQTPAGYAEL 171 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccC-cCCCCHHHHHHH
Confidence 9999998765 578999999999 9999998642211100000000 0 0000000 000011 234589999999
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
|+++||++...
T Consensus 172 l~~aGf~v~~~ 182 (255)
T PRK14103 172 LTDAGCKVDAW 182 (255)
T ss_pred HHhCCCeEEEE
Confidence 99999985443
No 15
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=1.7e-16 Score=140.77 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=115.2
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
...+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 456777887 8999999999999999999999998 789999998 777665542 67899999999873337
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||.|++..++.|++.+....+++++.+.|+ |||++++............. .....++.....+++|..++.+++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~~~~~~~~~~--~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTITHRDPPYHAE--RRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEEE--HHHHHC--TTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEecccccccchhh--cCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 999999999999998888899999999999 99999998777765432110 000113333344666788899999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||++..+..++
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999999887664
No 16
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=4.7e-16 Score=141.31 Aligned_cols=141 Identities=25% Similarity=0.283 Sum_probs=110.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
.++.+|||||||+|.++..+++.++..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 4578999999999999999999888889999999 888887765 3578999999987 655 39999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++.+ .+|++++++|+ |||++++.+...+.... .....+.. ....+.+++.++|+++||+.+++..
T Consensus 192 ~d~~--~~L~e~~rvLk-PGG~LvIi~~~~p~~~~-----~r~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLK-IGGKACLIGPVHPTFWL-----SRFFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHH--HHHHHHHHhcC-CCcEEEEEEecCcchhH-----HHHhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 8764 68999999999 99999988765432110 00001111 1124689999999999999999987
Q ss_pred cCC
Q 018775 338 MPA 340 (350)
Q Consensus 338 ~~~ 340 (350)
++.
T Consensus 257 i~~ 259 (340)
T PLN02490 257 IGP 259 (340)
T ss_pred cCh
Confidence 643
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.69 E-value=1.3e-15 Score=133.73 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=122.4
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-- 243 (350)
++..+. ..++.+|||||||+|.++..+++.+| +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 444444 44678999999999999999999987 789999999 777776654 3568999999987 443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---Hh----hhcCC----
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---MF----AHTTG---- 312 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~---- 312 (350)
.||+|++.+++|++++. ..+|++++++|+ |||++++.+...+..... ....+.. ++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~-~gG~li~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLK-PGGRLVILEFSKPTNPPL-----KKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhcc-CCcEEEEEEecCCCchHH-----HHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 49999999999998764 578999999999 999999998766543210 0000100 00 00000
Q ss_pred --------cccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 313 --------GKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 313 --------~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
...++.++|.++|+++||+.+++.... +...++.|+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478999999999999999999874 6788999987
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=8.8e-16 Score=139.98 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=109.0
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------CCCCeEEEeccCCC-CCC-Cc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------VCEGIFHVGGDMFD-AIP-KA 245 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~p-~~ 245 (350)
+...++ ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 335689999999999999999998765 5999998 55554321 14579999999987 654 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++||..+. ..+|++++++|+ |||.+++.....+.......... + .+....+.-..++.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~----~-~y~~~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPG----D-RYAKMRNVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCch----h-HHhcCccceeCCCHHHHHHHH
Confidence 999999999997765 478999999999 99999887666554432110000 0 010111101345899999999
Q ss_pred HhcCCceeEEEEc
Q 018775 326 EQGGFHRCKIISM 338 (350)
Q Consensus 326 ~~aGf~~~~~~~~ 338 (350)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999998765
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.68 E-value=8.3e-16 Score=138.62 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=109.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------CCCCeEEEeccCCC-CC-CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------VCEGIFHVGGDMFD-AI-PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~-p~ 244 (350)
.++..+. ..++.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +. ..
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3444554 455789999999999999999987664 7899998 66654321 24678888888877 43 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..+|||+++. ..+|++++++|+ |||.|++.+...+............ ...+. +--..++.+++.++
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~r--y~k~~---nv~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDR--YAKMK---NVYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHH--HHhcc---ccccCCCHHHHHHH
Confidence 9999999999998765 478999999999 9999999877665432210000000 00011 10134589999999
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
|+++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999998754
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=1.1e-15 Score=147.79 Aligned_cols=152 Identities=14% Similarity=0.217 Sum_probs=118.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~ 244 (350)
..+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 45666666 5678899999999999999998876 779999999 888887653 4579999999988 555 3
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..+++|+++. ..++++++++|+ |||++++.+.......... ..... . ...+ ...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~-----~~~~~-~-~~~g-~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLK-PGGKVLISDYCRSPGTPSP-----EFAEY-I-KQRG-YDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcC-CCeEEEEEEeccCCCCCcH-----HHHHH-H-HhcC-CCCCCHHHHHHH
Confidence 9999999999998875 478999999999 9999999987765432211 11111 1 1122 456789999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||.++.+...+
T Consensus 402 l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 402 LKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHCCCeeeeeecch
Confidence 999999999776543
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.67 E-value=1e-15 Score=133.25 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=108.0
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhccC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILHDW 257 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~ 257 (350)
.+|||||||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777776653 4689999999976 554 49999999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++. ..++++++++|+ |||++++.+...+...... . .... ....+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~-----~-------~~~~-~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLK-DGGHLVLADFIANLLSAIE-----H-------EETT-SYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcC-CCCEEEEEEcccccCcccc-----c-------cccc-cccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 589999999999 9999999887543211100 0 0011 2245789999999999999999877
Q ss_pred cC
Q 018775 338 MP 339 (350)
Q Consensus 338 ~~ 339 (350)
+.
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
No 22
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=2e-15 Score=131.17 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=120.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D 246 (350)
+++.+. ..++.+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 31 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 31 AVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 344444 446889999999999999999999886 78999999 777776653 3578999999988 544 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh---cC-----C------
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH---TT-----G------ 312 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~------ 312 (350)
+|+++.++|+.++ ...+++++++.|+ |||++++.+...+.... .....+..+... .+ .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLK-PGGRLVILEFSKPANAL-----LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcC-CCcEEEEEEecCCCchh-----hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998765 4578999999999 99999998876543321 111111111100 00 0
Q ss_pred -----cccCCHHHHHHHHHhcCCceeEEEEcCCc-eeEEEEee
Q 018775 313 -----GKERTEQEWMKLLEQGGFHRCKIISMPAL-YSIIEAYP 349 (350)
Q Consensus 313 -----~~~~s~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 349 (350)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11237889999999999999999998654 56777765
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=2.4e-15 Score=127.99 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=107.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~ 244 (350)
..+++.++ ..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34555555 455689999999999999999986 568999999 888887664 2458888899887 444 4
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..++|++++++...++++++++|+ |||++++++....+....+ ... ....+.+|+.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAMDTADYPCT--------------VGF-PFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEecCCCCCCC--------------CCC-CCccCHHHHHHH
Confidence 999999999999998888999999999999 9999887765544322100 001 123468899999
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++ ||+++..
T Consensus 160 ~~--~~~~~~~ 168 (197)
T PRK11207 160 YE--GWEMVKY 168 (197)
T ss_pred hC--CCeEEEe
Confidence 87 8988776
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=2.7e-15 Score=134.45 Aligned_cols=145 Identities=17% Similarity=0.306 Sum_probs=112.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|..+..+++. .++.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877776 46678999999 888888764 3589999999987 655 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++|++++. ..++++++++|+ |||++++.+........ .....+..+...+. +...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLK-PGGRFAISDVVLRGELP-----EEIRNDAELYAGCV-AGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcC-CCcEEEEEEeeccCCCC-----HHHHHhHHHHhccc-cCCCCHHHHHHHHHHCCCCc
Confidence 99987765 478999999999 99999999887644221 11122223332223 45568899999999999999
Q ss_pred eEEEE
Q 018775 333 CKIIS 337 (350)
Q Consensus 333 ~~~~~ 337 (350)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=4.7e-16 Score=120.08 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=83.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccC-CC-CC-CCccEEEecc-h
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDM-FD-AI-PKADAVFMKW-I 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~-~~-~~-p~~D~i~~~~-v 253 (350)
++.+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++|+++++|+ .. +. ++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999999 888887654 68999999999 33 33 3599999999 6
Q ss_pred hccCCh-HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDD-EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+|++.. ++..++|+++++.|+ |||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 665443 577899999999999 999999865
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=7.6e-16 Score=139.50 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=105.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
++.+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+|+++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 567999999999999998886 3678999999 888887763 2479999999877 543 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC----cccCCHHHHHHHHHhcCC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG----GKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~e~~~ll~~aGf 330 (350)
||+++.. .+|++++++|+ |||.+++........... ...............+ .+.++.+++.++|+++||
T Consensus 209 eHv~d~~--~~L~~l~r~Lk-PGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTI-PNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCHH--HHHHHHHHHcC-CCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 9998764 78999999999 999999987543211000 0000000011111110 235689999999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
+++++.-+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99887443
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=1.5e-14 Score=127.09 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=111.1
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--Cc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~ 245 (350)
+.+.+. ..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++..|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344455 6778999999999999999999987 7889999999 777766643 4679999999887 544 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++.++++++++. ..++++++++|+ |||.+++.+........... .......+............+..+|.+++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLR-PGGRVVVLDTDWDTLVWHSG-DRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhc-CCcEEEEEecCCCceeecCC-ChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999998875 578999999999 99999998854322111100 00011111111111102334567899999
Q ss_pred HhcCCceeEEEE
Q 018775 326 EQGGFHRCKIIS 337 (350)
Q Consensus 326 ~~aGf~~~~~~~ 337 (350)
+++||..+++..
T Consensus 165 ~~aGf~~~~~~~ 176 (241)
T PRK08317 165 REAGLTDIEVEP 176 (241)
T ss_pred HHcCCCceeEEE
Confidence 999999887644
No 28
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=1.8e-15 Score=124.48 Aligned_cols=136 Identities=19% Similarity=0.204 Sum_probs=97.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCCCccEEEecchhccCCh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIPKADAVFMKWILHDWDD 259 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p~~D~i~~~~vlh~~~~ 259 (350)
..+..+|||||||.|.++..+.+... +++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45789999999999999999976633 9999999 788877 223333332223 2235999999999999986
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh-cCCcccCCHHHHHHHHHhcCCceeE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH-TTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
...+|++++++|+ |||.+++.+........ .......+... ..+...++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLK-PGGYLVISDPNRDDPSP------RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEE-EEEEEEEEEEBTTSHHH------HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcC-CCCEEEEEEcCCcchhh------hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4689999999999 99999998877643110 00111111110 0224567999999999999999875
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=5e-15 Score=131.36 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CCC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AIP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~p- 243 (350)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 3444444 45679999999999999999986 468999999 899888764 3578999999876 233
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc--cccchh-hhhh---HhhhcCCcccC
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF--GDMGLV-FDLV---MFAHTTGGKER 316 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~--~~~~~~-~~~~---~~~~~~~~~~~ 316 (350)
.||+|++..++|+++++ ..+|++++++|+ |||++++............. ...... ..+. .....+ ....
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~ 186 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLR-PGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSP-DYPL 186 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcC-CCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCC-CCCC
Confidence 49999999999998776 478999999999 99999987544321100000 000000 0000 000011 2335
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCce
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALY 342 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~ 342 (350)
+.+++.++|+++||+++.+.-+..+.
T Consensus 187 ~~~~l~~~l~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 187 DPEQVYQWLEEAGWQIMGKTGVRVFH 212 (255)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEEEe
Confidence 78999999999999998766554433
No 30
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=6.4e-15 Score=141.80 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=108.8
Q ss_pred CChhhhhccCcchHHHHHHHHhhhhhhh--HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH
Q 018775 145 CEIWDFASQSPQFNNLFNDAMACTAKIV--MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV 221 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 221 (350)
..+|+++...++..++|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3567888777777777766554432221 111122334 44678999999999999999999999999999999 888
Q ss_pred hhhCCC-----CCCeEEEeccCCC-C--CC--CccEEEecchhccC-----------ChHHHHHHHHHHHhhCCCCCceE
Q 018775 222 VATAPV-----CEGIFHVGGDMFD-A--IP--KADAVFMKWILHDW-----------DDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 222 ~~~a~~-----~~~i~~~~~d~~~-~--~p--~~D~i~~~~vlh~~-----------~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
++.+++ ..++.++.+|..+ + ++ +||+|+++.++|+| ++++..++|++++++|+ |||++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrL 533 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRI 533 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEE
Confidence 887764 3467889999876 4 43 39999999999976 24677899999999999 99999
Q ss_pred EEEeeeecCC
Q 018775 281 VLVEIVVQED 290 (350)
Q Consensus 281 li~e~~~~~~ 290 (350)
++.|...++.
T Consensus 534 II~D~v~~E~ 543 (677)
T PRK06922 534 IIRDGIMTED 543 (677)
T ss_pred EEEeCccCCc
Confidence 9999766543
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=8.4e-16 Score=125.48 Aligned_cols=137 Identities=25% Similarity=0.414 Sum_probs=101.2
Q ss_pred CCcceEEEecCCchHHHHHHH-HHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIV-KSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~~ 252 (350)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++. .++++|..+|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 457899999999999999999 4578999999999 999988875 4589999999999 5 43 699999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH--hhhcCCcccCCHHHHHHHHHhcC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM--FAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
++|++++.. .++++++++|+ |+|.+++.+.......... ......+.+ ......+. ..++|..+|++||
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk-~~G~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLK-PGGILIISDPNHNDELPEQ---LEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEE-EEEEEEEEEEEHSHHHHHH---HHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCHH--HHHHHHHHHcC-CCcEEEEEECChHHHHHHH---HHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 999988764 78999999999 9999999888732211100 000111111 11011012 6789999999998
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.59 E-value=1.4e-14 Score=125.52 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=117.5
Q ss_pred hhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC
Q 018775 148 WDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP 226 (350)
Q Consensus 148 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 226 (350)
|+.++..+.....+...+..........+++.+.....+..+|||||||+|.++..+++. +.+++++|+ +++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 444444333333344434332333333444443311345789999999999999999875 458999999 88988776
Q ss_pred C-------CCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc
Q 018775 227 V-------CEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299 (350)
Q Consensus 227 ~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~ 299 (350)
+ ..++++..+|+.+....||+|++..+++|++.++...+++++++.++ +++.+.+. +... ..
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~~----~~~~------~~ 163 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTK-ERVIFTFA----PKTA------WL 163 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEEC----CCch------HH
Confidence 4 24799999999873366999999999999988888899999999988 76544431 1110 00
Q ss_pred hhhhhhHhhhcC------CcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 300 LVFDLVMFAHTT------GGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 300 ~~~~~~~~~~~~------~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
..... +....+ .-..++.+++.++++++||+++.+....
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 AFLKM-IGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHH-HHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 01111 111111 0123488999999999999999987664
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=3.2e-14 Score=120.85 Aligned_cols=140 Identities=15% Similarity=0.071 Sum_probs=104.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.+++.+. ..++.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-.+.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4445555 445679999999999999999985 568999999 888886653 2246777788765 443 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|+++.++|++++++...++++++++|+ |||++++++....+..... . .. ....+.+++.++|+
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~~~~~~~~~~~-----~---------~~-~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVAAMDTADYPCH-----M---------PF-SFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhC-CCcEEEEEEecccCCCCCC-----C---------Cc-CccCCHHHHHHHhC
Confidence 9999999999988888899999999999 9999888776543321100 0 00 22457899999886
Q ss_pred hcCCceeEEE
Q 018775 327 QGGFHRCKII 336 (350)
Q Consensus 327 ~aGf~~~~~~ 336 (350)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 48877765
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=5.3e-14 Score=125.15 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=91.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CC-CCccEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AI-PKADAV 248 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~-p~~D~i 248 (350)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ .. +.||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456677776 67789999999999999999999999999999999 899988876 4678999999877 22 359999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+++.++|++++. ..++++++++|+ |||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lk-pgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLA-PGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcC-CCcEEEEE
Confidence 999999988765 478999999999 99999885
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=5.8e-15 Score=110.12 Aligned_cols=88 Identities=28% Similarity=0.411 Sum_probs=76.6
Q ss_pred EEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHH
Q 018775 191 ADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~ 263 (350)
||||||+|..+..++++ +..+++++|. +.+++.+++ ..+++++.+|+.+ ++++ ||+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8899999999 888887765 5667799999998 7764 9999999999998 4457
Q ss_pred HHHHHHHhhCCCCCceEEE
Q 018775 264 KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli 282 (350)
+++++++++|| |||+++|
T Consensus 78 ~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEE-EEEEEEE
T ss_pred HHHHHHHHHcC-cCeEEeC
Confidence 89999999999 9999986
No 36
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.56 E-value=5.6e-14 Score=117.12 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=120.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh-------hCCCCCCeEEEeccCCCC---CC--------CccEEE
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA-------TAPVCEGIFHVGGDMFDA---IP--------KADAVF 249 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~~~~i~~~~~d~~~~---~p--------~~D~i~ 249 (350)
+|||||||||..+..+++++|+++..-.|. ++... .+...+-..-+..|+.++ .+ .||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998877776 33321 111111112234555552 11 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+.+++|..+.+.+..+++.+.++|+ |||.|+++-+...++...+ .....||-.+....+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts--~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTS--ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCC--cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999999999999999999999999 9999999998877654321 123456666655554456789999999999999
Q ss_pred CceeEEEEcCCceeEEEEee
Q 018775 330 FHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 330 f~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++++.||....+++.+|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999888777765
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=7.5e-14 Score=122.11 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=102.2
Q ss_pred CCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||||||+|.++..|++. .++.+++++|+ +++++.+++ ..++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999999888753 46679999999 999988875 2456666665443 322 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc------CC-----cccCCHHHHH
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT------TG-----GKERTEQEWM 322 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~s~~e~~ 322 (350)
|||+++++...+|++++++++ |.+++.+...+.... ..+........ .+ .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~---~~~~i~dl~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR---RLVLHNDLIRSRLAY-------ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC---eeEEEeccccCHHHH-------HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999999888899999999988 566665544432110 00000000000 00 1345899999
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
+++++ ||++...++..
T Consensus 209 ~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 209 ALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHhhC-CCeEEecccee
Confidence 99999 99988877654
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.56 E-value=1.7e-15 Score=114.30 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=59.4
Q ss_pred EEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CC---CeEEEeccCCCC-CC-CccEEEecchhccCC
Q 018775 191 ADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CE---GIFHVGGDMFDA-IP-KADAVFMKWILHDWD 258 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~i~~~~~d~~~~-~p-~~D~i~~~~vlh~~~ 258 (350)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|..+. .+ .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988876 12 344445555542 33 699999999999994
Q ss_pred hHHHHHHHHHHHhhCCCCCceE
Q 018775 259 DEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~l 280 (350)
+...+|+++++.|+ |||+|
T Consensus 81 --~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-T-SS-EE
T ss_pred --hHHHHHHHHHHHcC-CCCCC
Confidence 45689999999999 99986
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=119.00 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=107.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~ 261 (350)
++.+|||||||+|..+..+++.+ +.+++++|. ++|++.+++. ..++.+|+.+ |+++ ||+|++..+||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 578999999 9999998753 3467889888 7663 9999999999998775
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-------HhhhcCCc------------ccCCHHHHH
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-------MFAHTTGG------------KERTEQEWM 322 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------------~~~s~~e~~ 322 (350)
.+.|++++++|+ | .+.++|...++.... ..+..+. +....++. ...+.+++.
T Consensus 127 -~~~l~e~~RvLk-p--~~~ile~~~p~~~~~-----~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~ 197 (226)
T PRK05785 127 -EKVIAEFTRVSR-K--QVGFIAMGKPDNVIK-----RKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR 197 (226)
T ss_pred -HHHHHHHHHHhc-C--ceEEEEeCCCCcHHH-----HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999 9 344566554432210 0111111 11111101 123789999
Q ss_pred HHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
++++++| ..++.+.+. |...+..++|
T Consensus 198 ~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 198 EIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHh-CceEEEEccccEEEEEEEee
Confidence 9999984 778888875 4456777776
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.54 E-value=1.4e-13 Score=128.29 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=116.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCCCCCCccEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFDAIPKADAVF 249 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~p~~D~i~ 249 (350)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+....||+|+
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 44566666 6788999999999999999998875 679999999 888887764 2357888888765324599999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+..+++|.++.....++++++++|+ |||++++.+...+..... ...+.+. ..++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~~~~~~~----~~~~i~~---yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGSNKTDTN----VDPWINK---YIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccCCCCCCC----CCCCcee---eecCCCcCCCHHHHHHHHH-CC
Confidence 9999999988777899999999999 999999987655443211 0111111 1234366778899888766 58
Q ss_pred CceeEEEEcCC
Q 018775 330 FHRCKIISMPA 340 (350)
Q Consensus 330 f~~~~~~~~~~ 340 (350)
|.+..+..++.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99888766543
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.9e-13 Score=120.08 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=103.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
...+|||||||+|.++..+++.+|..+++++|. +.+++.++. ..+++++.+|+.+ +++ .||+|++..++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999999 788776654 3578999999988 544 3999999999998765
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
. ..+|++++++|+ |||.+++.+...... ..+.... .... ....+.++|.+++.++ |..+.+.
T Consensus 114 ~--~~~l~~~~~~L~-~~G~l~~~~~~~~~~--------~~~~~~~--~~~~-~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLK-PGGLLAFSTFGPGTL--------HELRQSF--GQHG-LRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcC-CCcEEEEEeCCccCH--------HHHHHHH--HHhc-cCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 578999999999 999999875433221 0111111 1012 3456789999999998 8876553
No 42
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.53 E-value=1.1e-13 Score=120.90 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh 255 (350)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .+++.+..+|+......||+|++..++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 3467899999999999999999875 45999999 888887764 2579999999544444699999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-----hcCCcccCCHHHHHHHHHhcCC
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-----HTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~e~~~ll~~aGf 330 (350)
|+++++...+++++.+.++ +++.+.+ . +.... .......... ........+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~-~~~~i~~-~---~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTR-GSLIFTF-A---PYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcC-CeEEEEE-C---CccHH------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 9999988999999999766 5443322 1 11000 0011110000 0011234578999999999999
Q ss_pred ceeEEEEcCC
Q 018775 331 HRCKIISMPA 340 (350)
Q Consensus 331 ~~~~~~~~~~ 340 (350)
++.++.+...
T Consensus 208 ~~~~~~~~~~ 217 (230)
T PRK07580 208 KVVRTERISS 217 (230)
T ss_pred ceEeeeeccc
Confidence 9999888653
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=5.2e-14 Score=116.02 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=123.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC--CCCCccEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD--AIPKADAV 248 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~p~~D~i 248 (350)
+..++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+. ..+++|..+|+.+ |.++.|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456777888 78899999999999999999999999999999999 999998875 7889999999998 44469999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhh--------hhHhh--hcCCcccCCH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD--------LVMFA--HTTGGKERTE 318 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~s~ 318 (350)
+.+.+||-+++. .++|.++...|. |||.|.+.= ++....+. ...+.+ -.+.. ... ....+.
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~-Pgg~LAVQm---PdN~deps--H~~mr~~A~~~p~~~~l~~~~~~r-~~v~s~ 167 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLA-PGGVLAVQM---PDNLDEPS--HRLMRETADEAPFAQELGGRGLTR-APLPSP 167 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhC-CCceEEEEC---CCccCchh--HHHHHHHHhcCchhhhhCcccccc-CCCCCH
Confidence 999999987876 578999999999 999988732 22211110 001111 11111 011 345589
Q ss_pred HHHHHHHHhcCCceeEE-----EEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKI-----ISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~ 349 (350)
..+-++|...+-++-.. +++++-..++++.|
T Consensus 168 a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 168 AAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 99999999998554322 33456677777765
No 44
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.52 E-value=2.5e-14 Score=120.85 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=105.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---C--CCeEEEeccCCC-CC--CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---C--EGIFHVGGDMFD-AI--PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~--~~i~~~~~d~~~-~~--p~~D~i~~~~vlh~ 256 (350)
.+.+|||||||.|.++..+++.. .+++++|. +..++.|+. . -.+.+.+...++ .. ..||+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 58899999999999999999985 78999999 899998874 2 234466666665 22 36999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhcCCc-----ccCCHHHHHHHHHhcCC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHTTGG-----KERTEQEWMKLLEQGGF 330 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~e~~~ll~~aGf 330 (350)
.++++ .+++++.+.+| |||.+++.......... ....+.. ..+...+.| +...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvk-P~G~lf~STinrt~ka~-----~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVK-PGGILFLSTINRTLKAY-----LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcC-CCcEEEEeccccCHHHH-----HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99886 58999999999 99999987766433211 1111111 111122211 34478999999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
.......+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98877554
No 45
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=2.7e-14 Score=121.40 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=106.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CC----CeEEEeccCCCCCCCccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CE----GIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
+++|||||||.|.++..|++.. .+++++|. +.+++.|++ .. |+++.+.|.+...+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 5789999999999999999974 68999999 899988875 22 577888888876566999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC----cccCCHHHHHHHHHhcC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG----GKERTEQEWMKLLEQGG 329 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~e~~~ll~~aG 329 (350)
++|..++ +.+++.+.+.|+ |||+++|......-.... ......+........| .+..++++..+++..+|
T Consensus 168 leHV~dp--~~~l~~l~~~lk-P~G~lfittinrt~lS~~---~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLK-PNGRLFITTINRTILSFA---GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhC-CCCceEeeehhhhHHHhh---ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9996554 689999999999 999999987665443221 0111112222211111 24458999999999999
Q ss_pred CceeEEEE
Q 018775 330 FHRCKIIS 337 (350)
Q Consensus 330 f~~~~~~~ 337 (350)
+++..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 99877643
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=5e-13 Score=112.09 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=106.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCCccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPKADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~ 257 (350)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|..+ ..+.||+|+++...|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 888887664 2468889999887 33469999998877765
Q ss_pred ChH-------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 258 DDE-------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 258 ~~~-------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
++. ....+++++.++|+ |||++++.+.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLN----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccC----------------------------Ch
Confidence 432 13578999999999 9999998652211 15
Q ss_pred HHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
.++.+.+++.||....+..-+.++-.++++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 7778899999999999888888888888876
No 47
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=2e-13 Score=120.93 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=99.7
Q ss_pred CCcceEEEecCCchHHH-HHHH-HHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCCC---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGAL-AEIV-KSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDAI---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~-~~l~-~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~---p~~D~i~~ 250 (350)
.++.+|+|||||.|.++ +.++ +.+|+.+++++|. +++++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999987543 3333 4689999999999 888887664 478999999998732 35999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
. ++|+|..++-.++|+++++.|+ |||.+++--. .. ...+.+ + ....++.+ ||
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~---~G----------~r~~LY----p---~v~~~~~~------gf 253 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA---HG----------ARAFLY----P---VVDPCDLR------GF 253 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcC-CCcEEEEecc---cc----------hHhhcC----C---CCChhhCC------Ce
Confidence 9 9999976777899999999999 9999986321 10 001111 1 11233322 99
Q ss_pred ceeEEEEc-CC-ceeEEEEee
Q 018775 331 HRCKIISM-PA-LYSIIEAYP 349 (350)
Q Consensus 331 ~~~~~~~~-~~-~~~vi~~~~ 349 (350)
++..+++- +. ..+||.++|
T Consensus 254 ~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 254 EVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred EEEEEECCCCCceeeEEEEEe
Confidence 98877654 33 478999987
No 48
>PRK04266 fibrillarin; Provisional
Probab=99.51 E-value=1.3e-12 Score=113.01 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=101.2
Q ss_pred hcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh----hCCCCCCeEEEeccCCCC-----CC-CccE
Q 018775 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA----TAPVCEGIFHVGGDMFDA-----IP-KADA 247 (350)
Q Consensus 179 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~-----~p-~~D~ 247 (350)
.++ ..++.+|||+|||+|.++..+++..+..+++++|. +++++ .+++..++.++.+|...+ ++ .+|+
T Consensus 67 ~l~--i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP--IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC--CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 355 67889999999999999999999887668999999 77666 334346789999998753 22 3899
Q ss_pred EEecchhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 248 VFMKWILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 248 i~~~~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
|++ +.+++ ....+|++++++|+ |||+++|.=...+.+.. .. .. +..++..++++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LK-pGG~lvI~v~~~~~d~~-----------------~~-~~-~~~~~~~~~l~ 199 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLK-DGGYLLLAIKARSIDVT-----------------KD-PK-EIFKEEIRKLE 199 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcC-CCcEEEEEEecccccCc-----------------CC-HH-HHHHHHHHHHH
Confidence 984 34333 33457899999999 99999994221111000 00 01 11244459999
Q ss_pred hcCCceeEEEEcCCc---eeEEEEee
Q 018775 327 QGGFHRCKIISMPAL---YSIIEAYP 349 (350)
Q Consensus 327 ~aGf~~~~~~~~~~~---~~vi~~~~ 349 (350)
++||+.++.+.+... +..+.+++
T Consensus 200 ~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 200 EGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999888544 66776665
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.51 E-value=3.9e-13 Score=119.05 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=105.1
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--Ccc
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D 246 (350)
.+..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 3455666666 446789999999999999888764 568999999 899988875 3346788999988 655 399
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-HhhhcC-CcccCCHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHTT-GGKERTEQEWMKL 324 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~s~~e~~~l 324 (350)
+|+++.++|+.++. ..+|++++++|+ |||.+++.......-. .+.... ...... .....+.++|.++
T Consensus 106 ~V~s~~~l~~~~d~--~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~--------el~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 106 LAWSNLAVQWCGNL--STALRELYRVVR-PGGVVAFTTLVQGSLP--------ELHQAWQAVDERPHANRFLPPDAIEQA 174 (251)
T ss_pred EEEECchhhhcCCH--HHHHHHHHHHcC-CCeEEEEEeCCCCchH--------HHHHHHHHhccCCccccCCCHHHHHHH
Confidence 99999999876654 578999999999 9999998765433211 111110 000011 0234588999999
Q ss_pred HHhcCCce
Q 018775 325 LEQGGFHR 332 (350)
Q Consensus 325 l~~aGf~~ 332 (350)
+...|+..
T Consensus 175 l~~~~~~~ 182 (251)
T PRK10258 175 LNGWRYQH 182 (251)
T ss_pred HHhCCcee
Confidence 99888764
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=1.9e-13 Score=132.20 Aligned_cols=143 Identities=15% Similarity=0.238 Sum_probs=110.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC---CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD---AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~---~~p-- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.+ ++|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44555555 4456799999999999999999875 47899999 888876543 4579999999964 344
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++..++||+++++..+++++++++|+ |||++++.|.......... . ...+ ...++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~~~~~~~~~~-----~-------~~~~-~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRESCFHQSGDSK-----R-------KNNP-THYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCccc-----c-------cCCC-CeecChHHHHH
Confidence 4999999999999999888899999999999 9999999887654432110 0 0112 33456889999
Q ss_pred HHHhcCCceeE
Q 018775 324 LLEQGGFHRCK 334 (350)
Q Consensus 324 ll~~aGf~~~~ 334 (350)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998664
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=4e-13 Score=121.12 Aligned_cols=131 Identities=16% Similarity=0.066 Sum_probs=101.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhccC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHDW 257 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~ 257 (350)
++.+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999885 578999999 888876653 3368888888877 444 49999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
++++...++++++++|+ |||.+++++....+....+ .+....++.+|+.++++. |+++...
T Consensus 198 ~~~~~~~~l~~~~~~Lk-pgG~~l~v~~~~~~~~~~~---------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTN-PGGYNLIVCAMDTEDYPCP---------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcC-CCcEEEEEEecccccCCCC---------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 98888999999999999 9999888765543322110 000233568999999965 8888764
No 52
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.50 E-value=2.1e-13 Score=121.06 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=83.1
Q ss_pred CCcceEEEecCCchH----HHHHHHHHCC-----CCcEEEecc-hhHhhhCCCC--------------------------
Q 018775 185 DSIQSLADVGGGTGG----ALAEIVKSYP-----HIKGINFDL-PHVVATAPVC-------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 228 (350)
.+..+|+|+|||+|. +++.+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4555666554 578999999 8999887751
Q ss_pred -------CCeEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 229 -------EGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 229 -------~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+|+|..+|+.+ +.+ .||+|+|.++|||+++++..+++++++++|+ |||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 378999999998 433 4999999999999998888899999999999 999999844
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.49 E-value=7e-13 Score=112.02 Aligned_cols=125 Identities=23% Similarity=0.354 Sum_probs=96.9
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-CccEE
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KADAV 248 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~D~i 248 (350)
++.++ ..++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 34444 56788999999999999999999999999999999 888877754 2578999999865444 49999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG 328 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a 328 (350)
++....++ ...+++++++.|+ |||++++..... .+.+++.+++++.
T Consensus 102 ~~~~~~~~-----~~~~l~~~~~~Lk-~gG~lv~~~~~~----------------------------~~~~~~~~~l~~~ 147 (187)
T PRK08287 102 FIGGSGGN-----LTAIIDWSLAHLH-PGGRLVLTFILL----------------------------ENLHSALAHLEKC 147 (187)
T ss_pred EECCCccC-----HHHHHHHHHHhcC-CCeEEEEEEecH----------------------------hhHHHHHHHHHHC
Confidence 99766543 3467999999999 999997733110 1256777899999
Q ss_pred CCceeEEEE
Q 018775 329 GFHRCKIIS 337 (350)
Q Consensus 329 Gf~~~~~~~ 337 (350)
||+.+++..
T Consensus 148 g~~~~~~~~ 156 (187)
T PRK08287 148 GVSELDCVQ 156 (187)
T ss_pred CCCcceEEE
Confidence 998776533
No 54
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=3.1e-13 Score=115.35 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCCCC--CccEEEecchhccCCh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDAIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~ 259 (350)
..++.+|||||||+|..+..+++..|+.+++++|+ +++++.+++ ..++.+..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34677999999999999999999888899999999 899999876 4668889999888654 4999999999999988
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
++..+++++++++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~---~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN---RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC---cEEEEEEeeCCC
Confidence 888999999999976 688888875444
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=4.6e-14 Score=106.84 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=74.4
Q ss_pred EEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CC--CCccEEEec-chhcc
Q 018775 190 LADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AI--PKADAVFMK-WILHD 256 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~--p~~D~i~~~-~vlh~ 256 (350)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..++++++.|+.+ ++ +.||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 899887765 3589999999988 53 359999995 55999
Q ss_pred CChHHHHHHHHHHHhhCCCCCc
Q 018775 257 WDDEACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG 278 (350)
+++++..++++++.++|+ |||
T Consensus 81 ~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEE-EEE
T ss_pred CCHHHHHHHHHHHHHHhC-CCC
Confidence 999999999999999999 997
No 56
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.45 E-value=4.6e-12 Score=108.64 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------------CCCCeEEEeccCCC-C---
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------------VCEGIFHVGGDMFD-A--- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~i~~~~~d~~~-~--- 241 (350)
.++.+|||+|||.|..+..|+++ +..++++|+ +.+++.+. +..+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45689999999999999999986 678999999 88777631 13479999999998 4
Q ss_pred CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 242 IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 242 ~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.+.||+|+-..++||++.+.....++++.++|+ |||++++.....+..... .+ ....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~~~~~~~~----------------gp-p~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLDYDQSEMA----------------GP-PFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCCCC----------------Cc-CCCCCHHHH
Confidence 235999999999999999998999999999999 999988776655332110 01 124578999
Q ss_pred HHHHHhcCCceeEEEE
Q 018775 322 MKLLEQGGFHRCKIIS 337 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~ 337 (350)
.++|+. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998864 455554433
No 57
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.45 E-value=3.7e-13 Score=110.16 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=117.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCe
Q 018775 159 NLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGI 231 (350)
Q Consensus 159 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i 231 (350)
..|+..|..+.+.....+-..+. .+....||+||||+|..-.. ..--|..++|.+|. +.|-+.+.+ ...+
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 34666666665444444332333 45677899999999976432 22236788999998 777776543 4556
Q ss_pred E-EEeccCCC-C-CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH
Q 018775 232 F-HVGGDMFD-A-IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM 306 (350)
Q Consensus 232 ~-~~~~d~~~-~-~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 306 (350)
. |+.++.++ + .+ +||+|++..+|.- .++.++.|++++++|+ |||+++++|....+....++ -.....+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCS--ve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~~n~-i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCS--VEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGFWNR-ILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEec--cCCHHHHHHHHHHhcC-CCcEEEEEecccccchHHHH-HHHHHhchhh
Confidence 6 88888877 4 34 4999999999986 5556799999999999 99999999988876553211 0001112111
Q ss_pred hhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCc
Q 018775 307 FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPAL 341 (350)
Q Consensus 307 ~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~ 341 (350)
..... |...+.+.| +.|+++-|+..+....+.+
T Consensus 204 ~~~~d-GC~ltrd~~-e~Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 204 HLESD-GCVLTRDTG-ELLEDAEFSIDSCKRFNFG 236 (252)
T ss_pred heecc-ceEEehhHH-HHhhhcccccchhhcccCC
Confidence 22222 666788887 6778999999888776543
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.45 E-value=3.7e-12 Score=115.48 Aligned_cols=96 Identities=15% Similarity=0.284 Sum_probs=79.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC--CC-Cc-----cEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA--IP-KA-----DAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~p-~~-----D~i 248 (350)
++.+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ ..+|.++++|+.+. .+ .+ .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 567899999999999999999987 689999999 888776643 23567789999872 33 23 355
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
++...+++++++++..+|++++++|+ |||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 56688999999999999999999999 9999986
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=1.8e-12 Score=108.50 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=92.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-p~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +. +.||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 378999999999999999998899999999999 777765543 3469999999987 32 3599998866 554
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh---cCCcee
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ---GGFHRC 333 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~---aGf~~~ 333 (350)
...+++.+++.|+ |||++++... . . ...++.++.++ .||+.+
T Consensus 121 -----~~~~~~~~~~~Lk-pgG~lvi~~~---~-----------------------~---~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 121 -----LNVLLELTLNLLK-VGGYFLAYKG---K-----------------------K---YLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred -----HHHHHHHHHHhcC-CCCEEEEEcC---C-----------------------C---cHHHHHHHHHhhhhcCceEe
Confidence 2357888999999 9999986420 0 0 13444444444 799999
Q ss_pred EEEEcCCceeE
Q 018775 334 KIISMPALYSI 344 (350)
Q Consensus 334 ~~~~~~~~~~v 344 (350)
++.+...+..-
T Consensus 166 ~~~~~~~~~~~ 176 (181)
T TIGR00138 166 EVPPLTGPDRH 176 (181)
T ss_pred eccccCCCceE
Confidence 99888665443
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.44 E-value=1.7e-12 Score=113.80 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=98.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHh------hhCCC-CCCeEEEeccCCC-CC-CCccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVV------ATAPV-CEGIFHVGGDMFD-AI-PKADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~------~~a~~-~~~i~~~~~d~~~-~~-p~~D~i~~~~vl 254 (350)
-.+.+|||||||.|.++.+++.+.+. .++++|. +... +..-. ..++.+...-+++ +. ..||+|++..||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 35789999999999999999998654 6889995 3222 22221 2334444344444 32 349999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC---cccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN---IFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+|..++ ...|+++++.|+ |||.|++=..+.+.+... |..+++ .+-+--...|...+..+++++||+
T Consensus 193 YHrr~P--l~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa--------~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYA--------KMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred hccCCH--HHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCccc--------CCCceEEeCCHHHHHHHHHHcCCc
Confidence 997665 578999999999 999998766666654432 111111 011102345899999999999999
Q ss_pred eeEEEEc
Q 018775 332 RCKIISM 338 (350)
Q Consensus 332 ~~~~~~~ 338 (350)
.++++..
T Consensus 262 ~v~~v~~ 268 (315)
T PF08003_consen 262 DVRCVDV 268 (315)
T ss_pred eEEEecC
Confidence 9998765
No 61
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.43 E-value=5.6e-13 Score=111.66 Aligned_cols=139 Identities=21% Similarity=0.264 Sum_probs=96.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCC-eEEEeccCCC--CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEG-IFHVGGDMFD--AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-i~~~~~d~~~--~~p-~~D~i~~~~vl 254 (350)
.+..+.||.|+|+|+.+..++..+- -++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .||+||+.|++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 3578999999999999998776442 25566666 677776663 233 4455544444 443 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
-|++|++.+++|++++++|+ |+|.|+|=|.+...+.. .+|- ..+ .-.|+.+.|.++|++||+++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~-~~G~IvvKEN~~~~~~~--------~~D~----~Ds-SvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALK-PNGVIVVKENVSSSGFD--------EFDE----EDS-SVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEE-EEEEEEEEEEEESSSEE--------EEET----TTT-EEEEEHHHHHHHHHHCT-EEEE
T ss_pred ccCCHHHHHHHHHHHHHhCc-CCcEEEEEecCCCCCCc--------ccCC----ccC-eeecCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999 99999999988765421 1111 122 4567899999999999999998
Q ss_pred EEEc
Q 018775 335 IISM 338 (350)
Q Consensus 335 ~~~~ 338 (350)
...-
T Consensus 199 ~~~Q 202 (218)
T PF05891_consen 199 EEKQ 202 (218)
T ss_dssp EEE-
T ss_pred eccc
Confidence 7554
No 62
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=2.2e-12 Score=116.74 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=100.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCCCCccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 568999999 888877654 13578888887653345999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC------cccCCHHHHHHHHHh
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG------GKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~e~~~ll~~ 327 (350)
+||++++....+++++.+. . +|+. +|.. .+... ....+.. .....++ ....+.+++.++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~-~g~l-iIs~--~p~~~------~~~~l~~-~g~~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-A-EKRL-IISF--APKTL------YYDILKR-IGELFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-c-CCEE-EEEe--CCcch------HHHHHHH-HHhhcCCCCcCceeeeCCHHHHHHHHHH
Confidence 9999988777888888864 5 5544 4421 11110 0001110 0011110 122379999999999
Q ss_pred cCCceeEEEEcCCce---eEEEEee
Q 018775 328 GGFHRCKIISMPALY---SIIEAYP 349 (350)
Q Consensus 328 aGf~~~~~~~~~~~~---~vi~~~~ 349 (350)
+||++.+.......+ .+++|.+
T Consensus 290 AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 290 AGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CCCEEEEEEEeecceeHHhhhhhcc
Confidence 999988765543322 3555543
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=6.7e-12 Score=105.27 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh 255 (350)
+++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. +||+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999999 888877654 3359999999987 333 5999998653 1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
....+++++++.|+ |||++++.+... ...++.++.+.-|+.+.++
T Consensus 123 -----~~~~~l~~~~~~Lk-pGG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 123 -----SLSDLVELCLPLLK-PGGRFLALKGRD-----------------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -----CHHHHHHHHHHhcC-CCeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEeee
Confidence 24578999999999 999999763110 1455666677779998777
Q ss_pred EEc--C---CceeEEEEee
Q 018775 336 ISM--P---ALYSIIEAYP 349 (350)
Q Consensus 336 ~~~--~---~~~~vi~~~~ 349 (350)
+.. + +.....+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 168 IELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EEEecCCCCCcEEEEEEec
Confidence 553 3 3444555555
No 64
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=7.4e-13 Score=111.23 Aligned_cols=145 Identities=19% Similarity=0.297 Sum_probs=109.8
Q ss_pred eEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC-----CC--CccEEEecch
Q 018775 189 SLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA-----IP--KADAVFMKWI 253 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-----~p--~~D~i~~~~v 253 (350)
+||+||||.|.+..-+++..|+ +++..+|. |.+++..++ ..++.....|+..+ .+ ..|.|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999888 88999999 888888775 45566566666652 11 3999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc--ccCCHHHHHHHHHhcCCc
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG--KERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~e~~~ll~~aGf~ 331 (350)
|..+++++-...+++++++|| |||.|++-|....+-....+.. ...++.+..+...|. ...+.+++.++|.++||.
T Consensus 154 LSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~DlaqlRF~~-~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYDLAQLRFKK-GQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhC-CCcEEEEeecccchHHHHhccC-CceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 999999999999999999999 9999999887766543221111 122333333322211 234899999999999998
Q ss_pred eeEE
Q 018775 332 RCKI 335 (350)
Q Consensus 332 ~~~~ 335 (350)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 7764
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.40 E-value=3.1e-12 Score=112.02 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=99.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C-CCccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I-PKADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-p~~D~i~~~~v 253 (350)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++..|+.+ + . ..||+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 467999998 777776653 3357788777765 2 2 24999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhc-----CCcccCCHHHHHHHHHh
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHT-----TGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~s~~e~~~ll~~ 327 (350)
+++.++. ..+|+++.+.|+ |||.+++......... . ....... ...... ......+.++|.+++++
T Consensus 124 l~~~~~~--~~~l~~~~~~L~-~gG~l~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVK-PGGLVFFSTLNRNLKS---Y--LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred hhccCCH--HHHHHHHHHHcC-CCcEEEEEecCCChHH---H--HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence 9998765 478999999999 9999987654211100 0 0000000 000000 00234578999999999
Q ss_pred cCCceeEEEE
Q 018775 328 GGFHRCKIIS 337 (350)
Q Consensus 328 aGf~~~~~~~ 337 (350)
+||+++....
T Consensus 196 ~Gf~~v~~~~ 205 (233)
T PRK05134 196 AGLEVQDITG 205 (233)
T ss_pred CCCeEeeeee
Confidence 9999998754
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=1.2e-12 Score=107.69 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=97.3
Q ss_pred hcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCCC--CccEEEec
Q 018775 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAIP--KADAVFMK 251 (350)
Q Consensus 179 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~p--~~D~i~~~ 251 (350)
.++ .....+++|+|||.|.++..|+.+. -+.+++|. +.+++.+++ ..+|+++..|+.+..| .||+|+++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 355 5678899999999999999999986 36888999 888888764 5789999999988544 49999999
Q ss_pred chhccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 252 WILHDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 252 ~vlh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
.++|++++ ++...+++++.++|+ |||.|++-... +. .... . |.....+.+.++|.+. |
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r-d~---------------~c~~-w--gh~~ga~tv~~~~~~~-~ 172 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR-DA---------------NCRR-W--GHAAGAETVLEMLQEH-L 172 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE--HH---------------HHHH-T--T-S--HHHHHHHHHHH-S
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec-CC---------------cccc-c--CcccchHHHHHHHHHH-h
Confidence 99999986 678899999999999 99999985541 11 1100 1 2333478888888886 5
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
..++.+.+
T Consensus 173 ~~~~~~~~ 180 (201)
T PF05401_consen 173 TEVERVEC 180 (201)
T ss_dssp EEEEEEEE
T ss_pred hheeEEEE
Confidence 66665554
No 67
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=2.9e-12 Score=106.81 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.+++.++ .-++.++||+|||.|..+..|+++ +..++.+|. +..++.+++ .-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3445555 456789999999999999999997 678999998 766665543 4458889999988 555 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..|+++++.+....+++++.+.++ |||.+++...+..++.+.+ .. . ...++..|+.+.+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~~~~~d~p~~-------~~-------~-~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTFMETPDYPCP-------SP-------F-PFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEEB--SSS--S-------S----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEecccCCCCCC-------CC-------C-CcccCHHHHHHHhC
Confidence 9999999999999999999999999999 9999888665433221110 00 1 23345678888875
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
||.+++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 6888765
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=2.4e-11 Score=104.61 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=101.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------------CCCCeEEEeccCCCC---
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------------VCEGIFHVGGDMFDA--- 241 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~i~~~~~d~~~~--- 241 (350)
..++.+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345689999999999999999985 678999999 78777541 135799999999983
Q ss_pred -CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 -IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 -~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.+.||+|+-..++|+++.+.....++++.++|+ |||+++++....+..... .+ -...+.+|
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l~~~~~~~~~~~----------------gP-p~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLLVTLDYPQEELA----------------GP-PFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEeCCccCC----------------CC-CCCCCHHH
Confidence 235899999999999999999999999999999 999877655554332210 01 12457899
Q ss_pred HHHHHHhcCCceeEEEE
Q 018775 321 WMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~ 337 (350)
+.+++.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999964 366655544
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=6.1e-12 Score=116.17 Aligned_cols=108 Identities=18% Similarity=0.299 Sum_probs=86.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDAIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~~p 243 (350)
.-+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ ..+++++..|..+..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 44566666 34456999999999999999999999999999999 778877653 1378999999987443
Q ss_pred --CccEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 --KADAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 --~~D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++--+|. +++..+.+++++++++|+ |||.|+++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence 5999999755543 455667799999999999 999999873
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.31 E-value=2.6e-11 Score=95.02 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=79.3
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C--CCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A--IPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~--~p~ 244 (350)
+++.+. ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|... + .+.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344444 55677999999999999999999999999999999 788777653 3578898888764 1 235
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
||+|++....+ ...++++++++.|+ |||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk-~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLR-PGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcC-CCCEEEEE
Confidence 99999876543 34588999999999 99999874
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.30 E-value=4.1e-11 Score=106.07 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=94.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecch---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKWI--- 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~v--- 253 (350)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. ..+++++.+|+.++.+ .||+|+++--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887754 3469999999988543 4999998422
Q ss_pred ---hccCChH------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 254 ---LHDWDDE------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 254 ---lh~~~~~------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
++.+... ....+++++.++|+ |||++++.. +
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~--------------------------~- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEI--------------------------G- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEE--------------------------C-
Confidence 2222211 12478999999999 999988621 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
....+++.++|+++||+.++++.-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeC
Confidence 012577889999999998887664
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=2.4e-11 Score=111.51 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-~~D~ 247 (350)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++. .-..+++..|..+..+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455555 33456899999999999999999999999999999 788887764 2235678888877444 4999
Q ss_pred EEecchhccC---ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMKWILHDW---DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~~vlh~~---~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+++..+|+. .......+++++.+.|+ |||.++|+.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVa 303 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVA 303 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEE
Confidence 9999888863 23456799999999999 999999854
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=1.6e-11 Score=106.85 Aligned_cols=142 Identities=17% Similarity=0.099 Sum_probs=99.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-CeEEEeccCCC-CC---CCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-GIFHVGGDMFD-AI---PKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~-~~---p~~D~i~~~~vl 254 (350)
.+.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ +. ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 47899999999999999988864 45899998 777776654 22 58888888776 32 249999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-Hhhhc-C----CcccCCHHHHHHHHHhc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHT-T----GGKERTEQEWMKLLEQG 328 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----~~~~~s~~e~~~ll~~a 328 (350)
|+..+. ..+|++++++|+ |||.+++.......... ........ ..... . .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~-~gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLK-PGGILFFSTINRTPKSY-----LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcC-CCcEEEEEecCCCchHH-----HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998765 478999999999 99999886543211000 00000000 00000 0 01234789999999999
Q ss_pred CCceeEEEE
Q 018775 329 GFHRCKIIS 337 (350)
Q Consensus 329 Gf~~~~~~~ 337 (350)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988764
No 74
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=2.1e-10 Score=101.49 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=96.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hh----HhhhCCCCCCeEEEeccCCCC------CCCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PH----VVATAPVCEGIFHVGGDMFDA------IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~------~p~~D~i~~~ 251 (350)
+.++.+|||+|||+|.++..++... +.-+++.+|+ +. +++.++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999875 4558999998 54 555555456789999998753 2349999886
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. . .++...++.++++.|| |||+|+|.......... .+ -..+=.+|. ++|+++||+
T Consensus 210 va-~---pdq~~il~~na~r~LK-pGG~~vI~ika~~id~g-----------------~~-pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA-Q---PDQARIVALNAQYFLK-NGGHFIISIKANCIDST-----------------AK-PEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC-C---cchHHHHHHHHHHhcc-CCCEEEEEEeccccccC-----------------CC-HHHHHHHHH-HHHHHcCCc
Confidence 63 1 2244566779999999 99999993211111100 00 001001444 889999999
Q ss_pred eeEEEEcCC---ceeEEEEe
Q 018775 332 RCKIISMPA---LYSIIEAY 348 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~ 348 (350)
.++.+.++. .+.++.++
T Consensus 266 ~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 266 PKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 999988853 34555544
No 75
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=8.3e-11 Score=99.95 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=93.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~ 258 (350)
+++.+|||||||+|.++..+++. ...+++++|. +++++.++. .+++++.+|+.+ +++ .||+|+++.++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888765 3567899999 888887753 458888888865 233 499999999999987
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-----c--ccc--hhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-----G--DMG--LVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-----~--~~~--~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+. ..+|+++.+.++ + +++.- +....... . ... ..+...... ..+....+.+++.++++++|
T Consensus 90 d~--~~~l~e~~r~~~-~---~ii~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 90 NP--EEILDEMLRVGR-H---AIVSF---PNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred CH--HHHHHHHHHhCC-e---EEEEc---CChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCC
Confidence 64 467888877766 4 33321 11000000 0 000 000000000 01124568999999999999
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|++++....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999887665
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=1.5e-10 Score=103.98 Aligned_cols=136 Identities=19% Similarity=0.293 Sum_probs=100.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecc--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKW-- 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~-- 252 (350)
..+..+|||+|||+|..+..++..+|..+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 45678999999999999999999999999999999 787776654 3579999999988544 599999842
Q ss_pred ----hhccCC------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc
Q 018775 253 ----ILHDWD------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT 310 (350)
Q Consensus 253 ----vlh~~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (350)
.++.+. -+....+++++.+.|+ |||.+++ +.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~-e~------------------------- 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLL-EI------------------------- 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEE-EE-------------------------
Confidence 111111 1223578899999999 9999886 11
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
+ ....+++.+++++.||..++++. +.+...++.+++
T Consensus 239 g---~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 239 G---YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred C---chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 0 01246788999999999777754 455556666653
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=1.6e-11 Score=101.95 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=79.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~ 256 (350)
...+|||+|||+|.++..+++++|+.+++.+|. +.+++.+++ .+.++++..|.++..+ .||+|+++-=+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 578999999999999999999999999999999 888887754 2239999999999554 4999999866665
Q ss_pred CCh---HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 257 WDD---EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 257 ~~~---~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-.+ .-..++++++.+.|+ |||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLK-PGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhcc-CCCEEEEEe
Confidence 332 246789999999999 999997643
No 78
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=8.6e-11 Score=96.73 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=97.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCCC--ccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIPK--ADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p~--~D~i~~~~vlh~~~ 258 (350)
+++++|||+|||.|.+...|.+. .++++.++++ ++.+..+- ...++++++|+.+ .+|+ ||.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 57899999999999999888885 6899999998 55454443 3468899999998 3553 99999999999976
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------------hcCCcccCCHHHHHHHH
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------------HTTGGKERTEQEWMKLL 325 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~e~~~ll 325 (350)
.++ ++|+++.++-+ +.+|.=+.... ....+.+...+ .+++-...|..+++++.
T Consensus 90 ~P~--~vL~EmlRVgr----~~IVsFPNFg~--------W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 90 RPD--EVLEEMLRVGR----RAIVSFPNFGH--------WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred HHH--HHHHHHHHhcC----eEEEEecChHH--------HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 654 67888866644 55543221110 00111111000 12222344899999999
Q ss_pred HhcCCceeEEEEcCC
Q 018775 326 EQGGFHRCKIISMPA 340 (350)
Q Consensus 326 ~~aGf~~~~~~~~~~ 340 (350)
++.|+++++...+.+
T Consensus 156 ~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 156 RELGIRIEERVFLDG 170 (193)
T ss_pred HHCCCEEEEEEEEcC
Confidence 999999999888754
No 79
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=2e-11 Score=104.33 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=77.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccC-CC-C--CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDM-FD-A--IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~-~~-~--~p--~~D~i~~~~ 252 (350)
+..+|||||||+|..+..+++.+|+.+++++|. +++++.+++ ..+++++.+|+ .. + ++ .||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 578999999999999999999999999999999 888887754 35799999998 43 3 43 399999865
Q ss_pred hhccC------ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDW------DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~------~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..... .......+|++++++|+ |||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEc
Confidence 43211 11123578999999999 999999754
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.24 E-value=1.7e-10 Score=101.87 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=87.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4678999999999999988776544 36999999 888887764 13344333322 5999988533
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
.+....+++++.++|+ |||++++..... ...+++.+.+++.||+++++.
T Consensus 189 --~~~~~~l~~~~~~~Lk-pgG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLK-PGGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcC-CCcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 2335678999999999 999999753211 025778899999999999887
Q ss_pred EcCCceeE
Q 018775 337 SMPALYSI 344 (350)
Q Consensus 337 ~~~~~~~v 344 (350)
..++-..+
T Consensus 238 ~~~~W~~~ 245 (250)
T PRK00517 238 ERGEWVAL 245 (250)
T ss_pred EeCCEEEE
Confidence 76654444
No 81
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.22 E-value=3.2e-10 Score=101.84 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=90.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEecc---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMKW--- 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~~--- 252 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 888887764 3579999999987554 499999851
Q ss_pred ----------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 253 ----------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 253 ----------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
.+++.+. +....+++++.+.|+ |||++++ |.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~-e~--------------------------- 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVV-EV--------------------------- 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEE-EE---------------------------
Confidence 1122111 123678999999999 9999874 21
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+. +.++..+++.+.||.......
T Consensus 252 g~--~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 252 GN--SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred Cc--CHHHHHHHHHhCCCceeeecC
Confidence 11 235677778888887655443
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.1e-10 Score=99.10 Aligned_cols=142 Identities=17% Similarity=0.208 Sum_probs=104.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~ 245 (350)
+-+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ..+++.+++ ..+..+...|..++.+ .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45677777 55555999999999999999999999999999998 777777765 2233577788888655 59
Q ss_pred cEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 246 DAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 246 D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
|.|+++-=+|. ....-..++++.+++.|+ +||.|.|+-. + ...-..-++
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan-----~----------------------~l~y~~~L~ 277 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVAN-----R----------------------HLPYEKKLK 277 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEc-----C----------------------CCChHHHHH
Confidence 99999887775 223334589999999999 9999998654 1 111122233
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+. |..+++..-.+.+.|+.++|.
T Consensus 278 ~~-----Fg~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 278 EL-----FGNVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred Hh-----cCCEEEEEeCCCEEEEEEecC
Confidence 33 455677777777888888774
No 83
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.21 E-value=4.3e-10 Score=101.23 Aligned_cols=132 Identities=16% Similarity=0.224 Sum_probs=97.6
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEec------
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMK------ 251 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~------ 251 (350)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888877764 3569999999998654 49999985
Q ss_pred -------chhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 252 -------WILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 252 -------~vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
.+++|-|. .....+++++.+.|+ |||.+++ |...
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~-e~g~--------------------------- 246 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVC-EIGN--------------------------- 246 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEE-EECc---------------------------
Confidence 23333221 245678999999999 9998764 2110
Q ss_pred cCCHHHHHHHHH-hcCCceeEEEE-cCCceeEEEEee
Q 018775 315 ERTEQEWMKLLE-QGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 315 ~~s~~e~~~ll~-~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
...+...+++. +.||..++++. +.+...++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 01456667777 46898777755 355555666654
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=9.8e-11 Score=100.28 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=77.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p-- 243 (350)
.+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +++++.+++ .++++++.+|..+..+
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445555 56778999999999999999988764 568999999 888876654 2469999999987332
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+||+|++...+++++ +++.+.|+ |||+|++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~-~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLK-DGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcC-cCcEEEEE
Confidence 599999998887654 35778899 99999874
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.21 E-value=4.9e-10 Score=94.58 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=96.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCC-eEEEeccCCCCCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEG-IFHVGGDMFDAIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~~~p--~~D~i~~~~v 253 (350)
.++.+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.++.+|+.++++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45779999999999999999987 578999999 888877643 222 8899999988544 4999998644
Q ss_pred hccCC-------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 254 LHDWD-------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 254 lh~~~-------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
+...+ ......+++++.++|+ |||.+++..... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~~~----------------------~---- 152 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQSSL----------------------T---- 152 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEccc----------------------C----
Confidence 32211 2234578999999999 999988753100 1
Q ss_pred cCCHHHHHHHHHhcCCceeEEEEcC--C-ceeEEEEee
Q 018775 315 ERTEQEWMKLLEQGGFHRCKIISMP--A-LYSIIEAYP 349 (350)
Q Consensus 315 ~~s~~e~~~ll~~aGf~~~~~~~~~--~-~~~vi~~~~ 349 (350)
..+++.++++++||++..+.... . ...+++++|
T Consensus 153 --~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 153 --GEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred --CHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 14678889999999988765442 2 233555544
No 86
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=3.5e-11 Score=98.83 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred EEecc-hhHhhhCCC---------CCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 214 INFDL-PHVVATAPV---------CEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 214 ~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
+++|. ++|++.|++ ..+|+++.+|+.+ |+++ ||+|++.+++|++++. .++|++++++|+ |||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLk-pGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLK-PGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcC-cCeEE
Confidence 36788 888887642 2469999999998 7653 9999999999998764 588999999999 99999
Q ss_pred EEEeeeecCCCCCccccc----------chh----hhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCc-eeEE
Q 018775 281 VLVEIVVQEDGNNIFGDM----------GLV----FDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPAL-YSII 345 (350)
Q Consensus 281 li~e~~~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~-~~vi 345 (350)
++.|...++......... ..+ .....+...- ....+.+++.++|+++||+.++.+..... ..+.
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si-~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~ 156 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSI-NGYLTGEELETLALEAGFSSACHYEISGGFMGNL 156 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHH-HHCcCHHHHHHHHHHcCCCcceEEECcchHhHee
Confidence 999987654321100000 000 0000000000 12347899999999999999988877543 3344
Q ss_pred EE
Q 018775 346 EA 347 (350)
Q Consensus 346 ~~ 347 (350)
.+
T Consensus 157 ~~ 158 (160)
T PLN02232 157 VA 158 (160)
T ss_pred Ee
Confidence 43
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=3.8e-10 Score=92.32 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=82.0
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCCCcc
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIPKAD 246 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p~~D 246 (350)
+.++. ..++.+++|||||+|..++.++..+|..+++.+|. +++++..++ .++++++.+|.-+ +.|.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 44455 78899999999999999999999999999999998 777665443 6899999999987 344699
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.|+....-. ...+|+.+...|+ |||+|++.-
T Consensus 105 aiFIGGg~~------i~~ile~~~~~l~-~ggrlV~na 135 (187)
T COG2242 105 AIFIGGGGN------IEEILEAAWERLK-PGGRLVANA 135 (187)
T ss_pred EEEECCCCC------HHHHHHHHHHHcC-cCCeEEEEe
Confidence 999977532 4578999999999 999998643
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.19 E-value=7.1e-10 Score=102.73 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=98.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC---CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP---KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p---~~D~i~~~~vlh 255 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++ ..+ .||+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 889887764 4579999999987 332 499999953110
Q ss_pred c-----C------------------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 256 D-----W------------------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 256 ~-----~------------------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
. . +.+-...+++.+.+.|+ |||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lil-EiG~------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLL-EHGF------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEE-EECc-------------------------
Confidence 0 0 00113477788888999 9998763 2111
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
...+.+.+++++.||..++++. ..+...++.+++
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 1257888899999999888766 456666766664
No 89
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=97.78 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=104.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~~ 250 (350)
.....+|||+|||+|..+..++++.++++++++++ +.+.+.|++ .+||++++.|+.+ . .+ .||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34589999999999999999999999999999999 888888875 6899999999997 2 22 3999999
Q ss_pred cchhccCCh----------------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 251 KWILHDWDD----------------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 251 ~~vlh~~~~----------------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
+-=.+.-+. -...++++.+.+.|| |||++.++-. .
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r---~------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR---P------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec---H-------------------------
Confidence 643332221 135688999999999 9999986431 1
Q ss_pred cCCHHHHHHHHHhcCCceeEEEEcC---C---ceeEEEEeeC
Q 018775 315 ERTEQEWMKLLEQGGFHRCKIISMP---A---LYSIIEAYPQ 350 (350)
Q Consensus 315 ~~s~~e~~~ll~~aGf~~~~~~~~~---~---~~~vi~~~~~ 350 (350)
-...+|.+++.+.+|...++..+. + ..-+++++|+
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 125788889999999887775552 2 2447777764
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.17 E-value=7.8e-10 Score=100.27 Aligned_cols=95 Identities=19% Similarity=0.351 Sum_probs=76.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEecc----
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMKW---- 252 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~~---- 252 (350)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 888887764 3579999999987544 499999851
Q ss_pred ---------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEE
Q 018775 253 ---------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 ---------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+++.|. +....+++++.+.|+ |||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 1122221 224688999999999 9999875
No 91
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.17 E-value=2.2e-09 Score=93.39 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=115.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC------CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA------IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~------~p~~D~i 248 (350)
....+||||.||+|.+....+..+|. .++...|. +..++..++ .+-++|.++|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46889999999999999999999997 68888898 766666543 45569999999982 2458999
Q ss_pred EecchhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc-----ccCCHHHHH
Q 018775 249 FMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG-----KERTEQEWM 322 (350)
Q Consensus 249 ~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~e~~ 322 (350)
+.+.....++|++ +...|+-+++++. |||.++-...-..+... +....+..+-. | +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTgQPwHPQle--------~IAr~LtsHr~-g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTGQPWHPQLE--------MIARVLTSHRD-GKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcCCCCCcchH--------HHHHHHhcccC-CCceEEEecCHHHHH
Confidence 9999999999987 4457999999999 99999865533333221 11111111111 2 457999999
Q ss_pred HHHHhcCCceeEEEEc-CCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
++++++||+.++..-- -+-+.|..|+|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999997766543 35688888765
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.15 E-value=2.5e-10 Score=102.25 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC---cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI---KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
...+|||||||+|.++..+++.++.. +++++|+ +.+++.|++ ..++++..+|..+ |++ .||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999887743 6899999 889988765 4678999999988 765 39999975431
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+++++++|+ |||+++++.
T Consensus 162 ------~~~~e~~rvLk-pgG~li~~~ 181 (272)
T PRK11088 162 ------CKAEELARVVK-PGGIVITVT 181 (272)
T ss_pred ------CCHHHHHhhcc-CCCEEEEEe
Confidence 23678999999 999999875
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=3.4e-10 Score=97.37 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 242 (350)
..+++.++ ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++ .++++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44555666 6788999999999999999888874 4578999999 888887764 357999999998732
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+||+|++....++++ +.+.+.|+ |||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lk-pgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLK-DGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhC-CCcEEEEE
Confidence 2599999987665533 35677899 99999884
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.14 E-value=1.2e-10 Score=98.96 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=76.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C---CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A---IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~---~p--~~D~i~~~~ 252 (350)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 467999999999999999999999999999999 888877653 3589999999975 2 33 388888764
Q ss_pred hhccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-.+ |+... ...++++++++|+ |||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEe
Confidence 322 32211 1468999999999 999998755
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.14 E-value=7.1e-10 Score=94.50 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=76.6
Q ss_pred HhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-CC
Q 018775 178 SHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-PK 244 (350)
Q Consensus 178 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-p~ 244 (350)
..++ ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|..+ + . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3445 6788999999999999999998764 6678999999 888886653 3578999999876 2 2 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
||+|++.. +..+...+++.+.+.|+ |||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lk-pgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIK-KGGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcC-CCcEEEE
Confidence 99999853 12345678999999999 9999985
No 96
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=1e-09 Score=94.16 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p--~~D~i~~~ 251 (350)
++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4567899999999999999999886 45689999984432 234589999999883 32 49999997
Q ss_pred chhccCChHH---------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDEA---------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~~---------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
...|..+.+. ...+|+.++++|+ |||++++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEE
Confidence 7666543321 2468999999999 999999854
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=1e-09 Score=96.04 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=91.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~~ 261 (350)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ ..+++++.+|+.+ ..+ .||+|+++--+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999988877789999999 899988775 4578999999998 323 499999987776654332
Q ss_pred ------------------HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 262 ------------------CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 262 ------------------~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
..++++.....|+ |+|.+++. ....+. + ....+.+++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~---yss~~~-------------y------~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFA---YSGRPY-------------Y------DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEE---Eecccc-------------c------cccCCHHHHHH
Confidence 1356677778888 88876654 111110 0 11224799999
Q ss_pred HHHhcCCc
Q 018775 324 LLEQGGFH 331 (350)
Q Consensus 324 ll~~aGf~ 331 (350)
+++++||.
T Consensus 201 ~l~~~g~~ 208 (279)
T PHA03411 201 WSKQTGLV 208 (279)
T ss_pred HHHhcCcE
Confidence 99999985
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.11 E-value=6.2e-10 Score=96.16 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=77.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 242 (350)
..+++.++ ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.+++ .++++++.+|..+..
T Consensus 67 ~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34555555 67889999999999999999998854 467999998 888887764 357999999998732
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+||+|++.....+. .+.+.+.|+ |||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~--------~~~~~~~L~-~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKI--------PEALIDQLK-EGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCcccc--------cHHHHHhcC-cCcEEEEE
Confidence 259999987655443 446788899 99999874
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.10 E-value=7.4e-10 Score=89.20 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=94.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-C-C-CccEEEecchhc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-I-P-KADAVFMKWILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~-p-~~D~i~~~~vlh 255 (350)
..+|||+|||.|.++..|++..-....+++|. +.+++.|+. .+.|+|.+.|+.+| + + .||+|+=..++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999743445788888 777776653 56699999999994 2 3 388887655544
Q ss_pred cC------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 256 DW------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 256 ~~------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
.+ +.......+..+.+.|+ |||.++|.. + -+|.+|+.+.++.-|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItS-------------------------C----N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITS-------------------------C----NFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccC-CCcEEEEEe-------------------------c----CccHHHHHHHHhcCC
Confidence 33 22333567888999999 999998732 2 236899999999999
Q ss_pred CceeEEEEcC
Q 018775 330 FHRCKIISMP 339 (350)
Q Consensus 330 f~~~~~~~~~ 339 (350)
|.....+|.|
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 9998888876
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.10 E-value=1.5e-09 Score=97.88 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-CCccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-PKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p~~D~i~~~~vlh 255 (350)
.++.+|||||||+|.++..+++. ...+++++|+ +.+++.+++ ..++.+...+..... ..||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 35689999999999999887764 4458999999 888887764 345677766644322 3599999865433
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
....++++++++|+ |||++++..... ...+++.+.+++. |+.+++
T Consensus 237 -----~l~~ll~~~~~~Lk-pgG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVK-PGGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcC-CCcEEEEEeCcH----------------------------hHHHHHHHHHHcc-CceeeE
Confidence 34678999999999 999998754211 0146667777765 877766
Q ss_pred EEc
Q 018775 336 ISM 338 (350)
Q Consensus 336 ~~~ 338 (350)
...
T Consensus 282 ~~~ 284 (288)
T TIGR00406 282 RQR 284 (288)
T ss_pred ecc
Confidence 543
No 101
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.09 E-value=2.4e-09 Score=91.89 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------------CCCeEEEeccCCC-CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------------CEGIFHVGGDMFD-AI- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~- 242 (350)
..++.+||+.|||.|.-+..|+.. +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345689999999999999999997 567999999 777776411 4589999999999 42
Q ss_pred ----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 ----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 ----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..||+|+=..+|++++++...+..+++.++|+ |||+++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEEec
Confidence 24999999999999999999999999999999 999999987644
No 102
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.09 E-value=9.6e-10 Score=94.51 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=100.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---C---------------CCCeEEEeccCCC-CCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---V---------------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~i~~~~~d~~~-~~p 243 (350)
..+..+||..|||.|.-+..|+++ +.+++++|+ +.+++.+. . ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 567789999999999999999997 568999999 88887651 0 4578999999999 322
Q ss_pred ---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 244 ---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 244 ---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.||+|+=..+|+.++++...+..+++.++|+ |||+++++....+..... .+ -...+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lLi~l~~~~~~~~----------------GP-Pf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLLITLEYPQGEME----------------GP-PFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEEEEEES-CSCSS----------------SS-S----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEEEEEEcCCcCCC----------------Cc-CCCCCHHH
Confidence 4999999999999999999999999999999 999966655443332210 01 12336899
Q ss_pred HHHHHHhcCCceeEEEE
Q 018775 321 WMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~ 337 (350)
+.++|. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999998 7888776644
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=1.8e-09 Score=104.47 Aligned_cols=132 Identities=18% Similarity=0.313 Sum_probs=96.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEec--c-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMK--W- 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~--~- 252 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++ +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 356899999999999999999999999999999 888887764 3589999999987543 49999983 1
Q ss_pred -----------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC
Q 018775 253 -----------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT 311 (350)
Q Consensus 253 -----------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (350)
++.+.|. +....+++++.+.|+ |||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~l-Eig~------------------------ 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIIL-EIGF------------------------ 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEE-EECC------------------------
Confidence 1111110 123567889999999 9999875 3110
Q ss_pred CcccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEE
Q 018775 312 GGKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEA 347 (350)
Q Consensus 312 ~~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~ 347 (350)
...+.+.+++.+.||..++++. +.+...++.+
T Consensus 272 ----~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ----KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ----chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 0256788888999998887765 4454445444
No 104
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=5e-09 Score=91.00 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=74.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~~vlh 255 (350)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456789999999999999998875 3348899999 788876553 2358889999987433 499999863111
Q ss_pred cCCh-------------------HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 256 DWDD-------------------EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 256 ~~~~-------------------~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-+. .....+++++++.|+ |||++++.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEecc
Confidence 1000 114568899999999 999999865444
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.05 E-value=1.7e-09 Score=91.97 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=77.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CC-CC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AI-PK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~-p~ 244 (350)
+++.++ ..++.+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ .++++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344455 56788999999999999999998888899999999 888887654 3579999998865 22 23
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+|.+++.. ......+++++++.|+ |||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lk-pgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLK-PGGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcC-CCeEEEEEee
Confidence 67665421 2234688999999999 9999998653
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=100.58 Aligned_cols=107 Identities=16% Similarity=0.284 Sum_probs=80.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP-- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p-- 243 (350)
+++.+. ...+..+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34567999999999999999999999999999999 777766543 3579999999854 344
Q ss_pred CccEEEecchhccCChHH-----HHHHHHHHHhhCCCCCceEEEEeee
Q 018775 244 KADAVFMKWILHDWDDEA-----CVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+|.|++++-. .|+... ...+|+.++++|+ |||.+.+....
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcC-CCcEEEEEEEC
Confidence 39999875432 233221 1478999999999 99999986543
No 107
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=5.9e-10 Score=98.87 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC-CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP-KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p-~~D~i~~~~ 252 (350)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999987764 3689999999865 233 599999752
Q ss_pred hhcc--CChH-HHHHHHHHHHhhCCCCCceEEEE
Q 018775 253 ILHD--WDDE-ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 253 vlh~--~~~~-~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+. .+.. ....+++++++.|+ |||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALS-SDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcC-CCcEEEEE
Confidence 221 1211 13589999999999 99999884
No 108
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=1.5e-09 Score=81.37 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=76.3
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------CCCCeEEEeccCCCCC----CCccEEEecchhccC
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------VCEGIFHVGGDMFDAI----PKADAVFMKWILHDW 257 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~----p~~D~i~~~~vlh~~ 257 (350)
+|+|+|||.|.++..+++ .+..+++++|. +..++.++ ...++++..+|+.+.. +++|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999998 66666554 1567999999999832 249999999999875
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+....+++++.+.++ |||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 4456789999999999 99999875
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.01 E-value=4.3e-10 Score=87.31 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=75.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
+.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+++++.+|+.+ . .+ .||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999998 789999999 888776654 4789999999987 3 33 4999999754
Q ss_pred hccCC------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWD------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+... .+....+++++.+.|+ |||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 44321 1234688999999999 999998764
No 110
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=9.6e-09 Score=91.06 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=90.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeE----EEeccCCC-CC-CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIF----HVGGDMFD-AI-PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~----~~~~d~~~-~~-p~ 244 (350)
.+++.+. .++.+|||+|||+|-++++.++-. ..+++++|+ |.+++.+++ .+.+. ....+..+ +. .+
T Consensus 154 ~~Le~~~---~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 154 EALEKLL---KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHhh---cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 3444444 589999999999999999988864 347899999 888887765 33343 33333333 23 25
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|+++ +|- +-...+...+++.++ |||++++.-... ...+...+.
T Consensus 230 ~DvIVAN-ILA----~vl~~La~~~~~~lk-pgg~lIlSGIl~----------------------------~q~~~V~~a 275 (300)
T COG2264 230 FDVIVAN-ILA----EVLVELAPDIKRLLK-PGGRLILSGILE----------------------------DQAESVAEA 275 (300)
T ss_pred ccEEEeh-hhH----HHHHHHHHHHHHHcC-CCceEEEEeehH----------------------------hHHHHHHHH
Confidence 9999974 343 345688999999999 999998743111 125777888
Q ss_pred HHhcCCceeEEEEcCC
Q 018775 325 LEQGGFHRCKIISMPA 340 (350)
Q Consensus 325 l~~aGf~~~~~~~~~~ 340 (350)
++++||.++++..-..
T Consensus 276 ~~~~gf~v~~~~~~~e 291 (300)
T COG2264 276 YEQAGFEVVEVLEREE 291 (300)
T ss_pred HHhCCCeEeEEEecCC
Confidence 9999999998877543
No 111
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.00 E-value=1.2e-08 Score=90.08 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=88.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCCCC-----CCccEEEecc--h-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFDAI-----PKADAVFMKW--I- 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~-----p~~D~i~~~~--v- 253 (350)
+..+|||+|||+|.++..+++..|..+++++|. +.+++.+++ ...++++.+|+++.. ..||+|+++- +
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999999 889887775 234688999988732 2499999852 1
Q ss_pred ---hccCChH------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 254 ---LHDWDDE------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 254 ---lh~~~~~------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
++..+++ -...+++.+.+.|+ |||++++.- . .
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~-~--~----------------------- 218 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVET-S--E----------------------- 218 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE-C--c-----------------------
Confidence 1111111 13478888999999 999988531 0 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. ..+++.+++++.||+...+.+
T Consensus 219 ~---~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 219 R---QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred c---hHHHHHHHHHHCCCCceeeEc
Confidence 0 145677888999998665444
No 112
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=90.37 Aligned_cols=151 Identities=16% Similarity=0.241 Sum_probs=97.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------------------
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------------------- 227 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------------- 227 (350)
..++.+...+..+..+|||||-+|.++..+++.|....+.++|+ +..++.|++
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence 34444443456789999999999999999999998889999999 777776653
Q ss_pred ----------------------CCCeEEEeccCCC-CCCCccEEEec----chhccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 228 ----------------------CEGIFHVGGDMFD-AIPKADAVFMK----WILHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 228 ----------------------~~~i~~~~~d~~~-~~p~~D~i~~~----~vlh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
..++.+..-|+.. ..|.||+|+|- ||=-+|.|+-...+++++++.|. |||.|
T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiL 205 (288)
T KOG2899|consen 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-PGGIL 205 (288)
T ss_pred ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-cCcEE
Confidence 0112222334443 34569999883 44446889999999999999999 99998
Q ss_pred EEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc--CCcee
Q 018775 281 VLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG--GFHRC 333 (350)
Q Consensus 281 li~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a--Gf~~~ 333 (350)
++ |+ .+-..+........-..+. .. .-...++.+..++.+. ||+.+
T Consensus 206 vv-EP----QpWksY~kaar~~e~~~~n-y~-~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 206 VV-EP----QPWKSYKKAARRSEKLAAN-YF-KIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred EE-cC----CchHHHHHHHHHHHHhhcC-cc-ceecCHHHHHhhhhhhhhheeee
Confidence 76 21 1111111111111111111 11 2344688888888887 45443
No 113
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.97 E-value=1.8e-08 Score=83.89 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=96.3
Q ss_pred hhhccCcchHHH----HHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhh
Q 018775 149 DFASQSPQFNNL----FNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVAT 224 (350)
Q Consensus 149 ~~~~~~~~~~~~----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 224 (350)
+.+.++|+.-.. |.+.+..|-....+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence 334445544333 444444454455677777776 234568999999999999966542 357888887221
Q ss_pred CCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchh
Q 018775 225 APVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV 301 (350)
Q Consensus 225 a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~ 301 (350)
.+ .++..|+.+ |.++ .|+++++-.|-. .+...+|+++.|+|| |||.|.|.|...
T Consensus 105 ---n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK-~~G~L~IAEV~S-------------- 161 (219)
T PF05148_consen 105 ---NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK-PGGILKIAEVKS-------------- 161 (219)
T ss_dssp ---ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE-EEEEEEEEEEGG--------------
T ss_pred ---CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec-cCcEEEEEEecc--------------
Confidence 12 367799987 8764 999998877754 335689999999999 999999988433
Q ss_pred hhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 302 FDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.-+.+++.+.+++.||+....-.....+.+.+-+|
T Consensus 162 ------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 162 ------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp ------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 111478889999999999888655555566666554
No 114
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=7.6e-09 Score=88.57 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=86.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-CC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVK-SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-IP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~p 243 (350)
..++...+ ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|++ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 45666666 88999999999999999999997 468789999998 887777764 57799999999983 33
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
++|+|++ +++++. .+|.+++++|+ |||.+++.-+..
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lk-pgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALK-PGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhC-CCcEEEEEcCCH
Confidence 5999998 777775 67999999999 999999866544
No 115
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.95 E-value=1.1e-08 Score=91.58 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh 255 (350)
.++.+|||||||+|-+++..++... .+++++|+ |.+++.+++ .+++.+. ...+ ....||+|+++- +
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI-~- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANI-L- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECC-C-
Confidence 4567999999999999998877643 47899999 888877764 4566553 1111 224599999743 2
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
.+-...++..+.++|+ |||.+++.-.... ..+++.+.+++ ||..++.
T Consensus 235 ---~~vL~~l~~~~~~~l~-~~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLK-PGGYLILSGILEE----------------------------QEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---HHHHHHHHHHCHHHEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEEEEE
T ss_pred ---HHHHHHHHHHHHHhhC-CCCEEEEccccHH----------------------------HHHHHHHHHHC-CCEEEEE
Confidence 3356788899999999 9999997443221 25777888877 9999888
Q ss_pred EEcCCceeEEEEee
Q 018775 336 ISMPALYSIIEAYP 349 (350)
Q Consensus 336 ~~~~~~~~vi~~~~ 349 (350)
...++ ...+.++|
T Consensus 282 ~~~~~-W~~l~~~K 294 (295)
T PF06325_consen 282 REEGE-WVALVFKK 294 (295)
T ss_dssp EEETT-EEEEEEEE
T ss_pred EEECC-EEEEEEEe
Confidence 77554 55555555
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.95 E-value=5.6e-09 Score=89.99 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=74.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.++..+. ..++.+|||||||+|..+..+++... +++++|. +++++.+++ ..+++++.+|..+.. .+
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3444555 67789999999999999987777643 7888998 888776654 346999999987743 24
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+|++...++++ .+.+.+.|+ |||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~-~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLK-EGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcC-CCcEEEEEE
Confidence 9999998766543 346788999 999998754
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=6.5e-09 Score=87.82 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p--~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4678899999999999999999886 56789999994322 234688898998762 23 49999985
Q ss_pred chhcc---CC------hHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 WILHD---WD------DEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 ~vlh~---~~------~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...|. |. .+....+|++++++|+ |||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEE
Confidence 43221 11 1223678999999999 99999874
No 118
>PRK01581 speE spermidine synthase; Validated
Probab=98.93 E-value=2.2e-08 Score=91.13 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC--C-CC-Ccc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD--A-IP-KAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~--~-~p-~~D 246 (350)
..+.+||+||||.|..+..+++..+..+++.+|+ +++++.|+. .+|++++.+|..+ . .+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999998888655678999999 888887762 4799999999887 2 22 499
Q ss_pred EEEecchhc---cCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMKWILH---DWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~~vlh---~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++-..-. ....--..++++.+++.|+ |||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 999863110 0111123578999999999 99998764
No 119
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.92 E-value=1.6e-08 Score=90.05 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=77.2
Q ss_pred CcceEEEecCCchH--HHHH--HHHHCC----CCcEEEecc-hhHhhhCCC-----------------------------
Q 018775 186 SIQSLADVGGGTGG--ALAE--IVKSYP----HIKGINFDL-PHVVATAPV----------------------------- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 227 (350)
+..+|.-.||++|. ++++ +.+..+ ++++++.|+ +.+++.|+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999994 3333 334332 467899999 888776643
Q ss_pred --------CCCeEEEeccCCC-CCC---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 228 --------CEGIFHVGGDMFD-AIP---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 228 --------~~~i~~~~~d~~~-~~p---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+|+|..+|..+ +.| .||+|+|.++|.|++++...+++++++++|+ |||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 1567889999998 443 4999999999999999999999999999999 99998873
No 120
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.92 E-value=3.4e-09 Score=92.19 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=84.8
Q ss_pred CcceEEEecCCc--hHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC----CCC--eEEEeccCCCC---C--C---C-cc
Q 018775 186 SIQSLADVGGGT--GGALAEIVK-SYPHIKGINFDL-PHVVATAPV----CEG--IFHVGGDMFDA---I--P---K-AD 246 (350)
Q Consensus 186 ~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~~~--i~~~~~d~~~~---~--p---~-~D 246 (350)
+...+||||||. -.....+++ ..|+.+++.+|. |-++.+++. ..+ ..++.+|+.+| + | . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 788999999993 344555655 489999999999 888887764 344 89999999984 1 2 1 22
Q ss_pred -----EEEecchhccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 247 -----AVFMKWILHDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 247 -----~i~~~~vlh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.+++..+||+++| ++...+++.+++.|. ||+.|.|.....+.... ......+.+-....+ ...||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~d~~p~----~~~~~~~~~~~~~~~-~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATDDGAPE----RAEALEAVYAQAGSP-GRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-TTSHH----HHHHHHHHHHHCCS-----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCCCCCHH----HHHHHHHHHHcCCCC-ceecCHHH
Confidence 7888999999987 678899999999999 99999998876543221 112223333333334 67889999
Q ss_pred HHHHHHhcCCceeE
Q 018775 321 WMKLLEQGGFHRCK 334 (350)
Q Consensus 321 ~~~ll~~aGf~~~~ 334 (350)
+.++|. ||..++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 887654
No 121
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=3.5e-09 Score=88.51 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=100.8
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCe-EEEec---cCCC--CCCC
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGI-FHVGG---DMFD--AIPK 244 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i-~~~~~---d~~~--~~p~ 244 (350)
...+++...+ ..+..++||+|||||.++..|...- -+.+++|+ .+|+++|.+..-. ++.+. +|.. ...+
T Consensus 113 ~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 3445555565 4558999999999999998887653 25788999 8999998862111 11222 2443 2335
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|+...||-++.. ...++--+...|+ |||.+.+.-...+..... ... ... -...+.+-...+
T Consensus 189 ~DLi~AaDVl~YlG~--Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f-----~l~-ps~-------RyAH~~~YVr~~ 252 (287)
T COG4976 189 FDLIVAADVLPYLGA--LEGLFAGAAGLLA-PGGLFAFSVETLPDDGGF-----VLG-PSQ-------RYAHSESYVRAL 252 (287)
T ss_pred ccchhhhhHHHhhcc--hhhHHHHHHHhcC-CCceEEEEecccCCCCCe-----ecc-hhh-------hhccchHHHHHH
Confidence 999999999999776 4578999999999 999998855444443210 000 000 111246778899
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
++..||.++++.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999998765
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=6.1e-08 Score=86.71 Aligned_cols=130 Identities=23% Similarity=0.335 Sum_probs=95.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----C-CCeEEEeccCCCCCC-CccEEEec--chhcc--
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----C-EGIFHVGGDMFDAIP-KADAVFMK--WILHD-- 256 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~i~~~~~d~~~~~p-~~D~i~~~--~vlh~-- 256 (350)
+|||+|||+|..++.++.+.|++++++.|+ +.+++.|++ . .++.++.+|.+++.+ .||+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888887764 2 556677779998665 59999985 33322
Q ss_pred -CC------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCC
Q 018775 257 -WD------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERT 317 (350)
Q Consensus 257 -~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 317 (350)
.. -+-...++.++.+.|+ |||.+++ |.-. -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~l-e~g~----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLIL-EIGL----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEE-EECC----------------------------Cc
Confidence 10 1235578888899999 9877664 2110 12
Q ss_pred HHHHHHHHHhcC-CceeEEEEc-CCceeEEEEe
Q 018775 318 EQEWMKLLEQGG-FHRCKIISM-PALYSIIEAY 348 (350)
Q Consensus 318 ~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~~ 348 (350)
.+...+++.+.| |..+.+..- .+...++.++
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 678889999999 666666554 4445555554
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.90 E-value=1e-08 Score=94.36 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=90.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
..++.... .+++.+|||+|||+|.++...+.. +.+++++|+ +.+++.++. ...+.+..+|+.+ +.+
T Consensus 172 ~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 172 RAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 33444444 567889999999999999886653 678999999 888776553 2348899999998 553
Q ss_pred CccEEEecch------hc-cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC
Q 018775 244 KADAVFMKWI------LH-DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 244 ~~D~i~~~~v------lh-~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (350)
.||+|++.-- .. +...+-...+|++++++|+ |||++++.-+ .
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~---~--------------------------- 296 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVP---T--------------------------- 296 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEc---C---------------------------
Confidence 4999998421 11 1111234689999999999 9999986431 1
Q ss_pred CHHHHHHHHHhcCCceeEEEEc
Q 018775 317 TEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
..+|.++++++|| ++..+..
T Consensus 297 -~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 297 -RIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred -CCCHHHHHhhcCc-chheeee
Confidence 1244567899999 7776664
No 124
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=5.4e-09 Score=93.87 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC--C--CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD--A--IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~p~~D~i 248 (350)
+++.+||+||||.|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655568999999 888887764 4689999999876 2 2249999
Q ss_pred EecchhccCChHH--HHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..-+.-+... ..++++.+++.|+ |||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence 9854333222221 3578999999999 9999875
No 125
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.88 E-value=4.2e-09 Score=88.80 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCcceEEEecCCchHH--HHH--HHHH----CC-CCcEEEecc-hhHhhhCCC---------------------------
Q 018775 185 DSIQSLADVGGGTGGA--LAE--IVKS----YP-HIKGINFDL-PHVVATAPV--------------------------- 227 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~--~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~--------------------------- 227 (350)
.+..+|.-.||++|.= +++ +... .+ ++++++.|+ +.+++.|+.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 3678999999999943 333 3331 12 467899999 888887753
Q ss_pred -------CCCeEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 228 -------CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+|+|...|..+ +.+ .||+|+|.+||-+++++...++++++++.|+ |||.|++-
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEe
Confidence 3689999999999 322 4999999999999999999999999999999 99999983
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.85 E-value=2.6e-08 Score=85.78 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=92.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC-CccEEEecchhccCChHHHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP-KADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~~~~~~~~ 263 (350)
...++||||+|.|..+..++..+.++.+ .+. +.|....++ ..++++..|-....+ .||+|.|.|+|---.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4678999999999999999998887444 455 777776664 334555444344222 59999999999764443 5
Q ss_pred HHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 264 KILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
.+|+.++++|+ |+|++++.-...-.+-.+ ........-...+...+...+-..+.+.+.|+.+||++++...+|
T Consensus 169 ~LL~~i~~~l~-p~G~lilAvVlP~~pyVE-~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALK-PNGRLILAVVLPFRPYVE-FGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhC-CCCEEEEEEEecccccEE-cCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 89999999999 999988754322111100 000000000001111111222234555689999999999987776
No 127
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.83 E-value=1e-07 Score=81.28 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=104.9
Q ss_pred hhhhccCcchHHHHHHHHhh----hhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhh
Q 018775 148 WDFASQSPQFNNLFNDAMAC----TAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVA 223 (350)
Q Consensus 148 ~~~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 223 (350)
++.+.++|.....|...... |-......+++.+. ..+....|.|+|||-+.++.. -.-.+..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec---
Confidence 44555666555555444332 22233556666665 235678999999999988761 122566677632
Q ss_pred hCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccch
Q 018775 224 TAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGL 300 (350)
Q Consensus 224 ~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~ 300 (350)
.+-.++..|+.. |.++ .|+++++-.|-. .+...++++++++|+ |||.+.|.|.-.
T Consensus 210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk-~gG~l~IAEv~S------------- 267 (325)
T KOG3045|consen 210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILK-PGGLLYIAEVKS------------- 267 (325)
T ss_pred -----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhc-cCceEEEEehhh-------------
Confidence 234567889998 7663 999988766653 346689999999999 999999988322
Q ss_pred hhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 301 VFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 301 ~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.-+...+.+.|...||.+..+......+.+.+..|
T Consensus 268 -------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 -------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 222345588889999999877665555555555443
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.1e-08 Score=83.01 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-- 243 (350)
...+++.+. .+++.+|||||||+|..+.-|++--. +++.+++ ++..+.|++ ..+|.++++|-..-.|
T Consensus 61 vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 345666666 88999999999999999998888644 7888888 888887765 4569999999999433
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||.|+.....-..|+ .+.+-|+ |||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~-~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE--------ALLDQLK-PGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH--------HHHHhcc-cCCEEEEEEc
Confidence 5999999776665554 3566789 9999998654
No 129
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.83 E-value=1.7e-08 Score=87.94 Aligned_cols=126 Identities=14% Similarity=0.283 Sum_probs=92.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-- 242 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 242 (350)
.++..++ ..++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .++|++..+|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4555666 889999999999999999999975 68889999998 777777664 5789999999976 33
Q ss_pred ---CCccEEEecchhccCChHHHHHHHHHHHhhC-CCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 243 ---PKADAVFMKWILHDWDDEACVKILKNCRQAI-PDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L-~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
..+|.|++ ++|++. ..+.++.++| + |||++.+.-+.... .
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~-~gG~i~~fsP~ieQ----------------------------v 152 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKK-PGGRICCFSPCIEQ----------------------------V 152 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-E-EEEEEEEEESSHHH----------------------------H
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhc-CCceEEEECCCHHH----------------------------H
Confidence 24899988 777775 5699999999 8 99999875433311 3
Q ss_pred HHHHHHHHhcCCceeEEEEc
Q 018775 319 QEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~ 338 (350)
....+.|++.||..+++..+
T Consensus 153 ~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEEEE
Confidence 44456678889988877554
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.80 E-value=2.3e-08 Score=90.89 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=74.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p 243 (350)
.+++.++ .+++.+|||||||+|.++..+++..+. ..++++|. +++++.+++ .+++.++.+|..+.. .
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3444455 567789999999999999999988753 46889998 888776654 357899999987632 3
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+||+|++...+++. ...+.+.|+ |||++++..
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLK-EGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcC-CCCEEEEEe
Confidence 59999987655542 234677899 999988844
No 131
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.80 E-value=7.6e-08 Score=84.72 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=81.0
Q ss_pred CcceEEEecCCch----HHHHHHHHHCC-----CCcEEEecc-hhHhhhCCC----------------------------
Q 018775 186 SIQSLADVGGGTG----GALAEIVKSYP-----HIKGINFDL-PHVVATAPV---------------------------- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 227 (350)
+..+|.-.||++| .+++.+.+.++ .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 34555666665 478899999 888887753
Q ss_pred -------CCCeEEEeccCCC-C-CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 -------CEGIFHVGGDMFD-A-IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~-~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
...|.|..+|..+ + .++ ||+|+|.+||-+++.+.-.++++++++.|+ |||.|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 2468999999998 4 444 999999999999999988999999999999 9999998
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.80 E-value=2.4e-08 Score=82.89 Aligned_cols=101 Identities=14% Similarity=0.279 Sum_probs=70.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC--c
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK--A 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~--~ 245 (350)
..+++.++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 34556666 667789999999999999999987 468999998 777776654 3589999999998 5553 8
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|+|+++ ..++...+....++++. .+. ++|.+++
T Consensus 79 d~vi~n-~Py~~~~~~i~~~l~~~--~~~-~~~~l~~ 111 (169)
T smart00650 79 YKVVGN-LPYNISTPILFKLLEEP--PAF-RDAVLMV 111 (169)
T ss_pred CEEEEC-CCcccHHHHHHHHHhcC--CCc-ceEEEEE
Confidence 888764 45554444333443322 134 5555544
No 133
>PLN02366 spermidine synthase
Probab=98.79 E-value=3.4e-08 Score=89.31 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CC--CCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AI--PKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~--p~~D~i 248 (350)
+++.+||+||||.|.++..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987533457889998 778887654 3689999999754 23 249999
Q ss_pred EecchhccCChH--HHHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..-+.-+.. -...+++.+++.|+ |||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence 984332221211 13578999999999 9999865
No 134
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.75 E-value=1.4e-08 Score=86.60 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=74.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p- 243 (350)
...+++.++ .+++.+|||||||+|.++.-++... +.-+++.+|. +...+.|++ ..+|+++.+|.....+
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 345667777 8899999999999999999988864 4446788898 888887765 4589999999887433
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+||.|++.......|. .+.+.|+ +||+|++.-
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~-~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLK-PGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEE-EEEEEEEEE
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcC-CCcEEEEEE
Confidence 4999999877765443 3566689 999999843
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.74 E-value=3.3e-08 Score=88.34 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=74.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C--CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A--IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~--~p~~D~i~ 249 (350)
+.+.+||+||||+|.++..+++..+..+++++|+ +++++.+++ ..+++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999998 788776653 3578888888765 1 23599999
Q ss_pred ecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...-..-+... ..++++++++.|+ |||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 865432222222 3578999999999 99999874
No 136
>PRK03612 spermidine synthase; Provisional
Probab=98.74 E-value=6.5e-08 Score=94.20 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC---CCC-Cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD---AIP-KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~---~~p-~~ 245 (350)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 455 79999999 899887764 2689999999887 223 59
Q ss_pred cEEEecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+|++...-...+.. -..++++++++.|+ |||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 999986432221111 12468999999999 99998864
No 137
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.71 E-value=3.9e-08 Score=83.13 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=70.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEec-------cCCCCC--C-CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGG-------DMFDAI--P-KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~-------d~~~~~--p-~~D~i~~~~vl 254 (350)
....++|||||+|..++.++..+. ++++.|. +.|++.+++..++++... +..+-. + +.|+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344999999999988888888765 5777888 999999988555554322 122211 2 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|-++-+ .+.+.++++||+|||.+.+....
T Consensus 111 HWFdle---~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred HhhchH---HHHHHHHHHcCCCCCEEEEEEcc
Confidence 976654 67999999999556677765443
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.1e-07 Score=90.65 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC---C-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA---I-P 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~-p 243 (350)
......++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..+++++.+|..+. . +
T Consensus 234 ~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 33444555 56788999999999999999999987789999999 888877754 23478999999862 2 2
Q ss_pred -CccEEEe----cc--hhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 -KADAVFM----KW--ILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 -~~D~i~~----~~--vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.||.|++ +. ++.+ ...++ ..++|+++.+.|+ |||++++.....
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~ 375 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCSI 375 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 4999984 21 1211 11221 2478999999999 999999877544
No 139
>PLN02672 methionine S-methyltransferase
Probab=98.68 E-value=2.1e-07 Score=95.98 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=88.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------------CCCeEEEeccCCCCCC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------------CEGIFHVGGDMFDAIP 243 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~i~~~~~d~~~~~p 243 (350)
+.+|||||||+|..++.+++++|+.+++++|+ +.+++.|++ .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999899999999 888876632 1479999999998543
Q ss_pred ----CccEEEec--chhcc----CC--------------------------hH----HHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 ----KADAVFMK--WILHD----WD--------------------------DE----ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 ----~~D~i~~~--~vlh~----~~--------------------------~~----~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|+++ ++... ++ ++ -...++.++.+.|+ |||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~l- 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIF- 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEE-
Confidence 49999985 33211 00 01 12567778888899 9987763
Q ss_pred eeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH-HHHHhcCCceeEEEEc
Q 018775 284 EIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM-KLLEQGGFHRCKIISM 338 (350)
Q Consensus 284 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~-~ll~~aGf~~~~~~~~ 338 (350)
|.-. ...+.+. +++++.||+.++++..
T Consensus 277 EiG~----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 277 NMGG----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred EECc----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 3111 1245666 5888899998887664
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.68 E-value=7.7e-08 Score=87.81 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=96.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------CCCeEEEeccCCCC-----C-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------CEGIFHVGGDMFDA-----I- 242 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~-----~- 242 (350)
++.+|||+|||-|.-+....... -..++++|+ +..++.|++ .-...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78999999999998888777753 347899999 777766543 13456788888751 1
Q ss_pred -C--CccEEEecchhccC--ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC-----------CCC---c---------
Q 018775 243 -P--KADAVFMKWILHDW--DDEACVKILKNCRQAIPDKSGKLVLVEIVVQED-----------GNN---I--------- 294 (350)
Q Consensus 243 -p--~~D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~-----------~~~---~--------- 294 (350)
+ .||+|-|.+.||+. +.+.+..+|+++.+.|+ |||.++..-+....- ... +
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~ 219 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDS 219 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecc
Confidence 2 49999999999994 56678889999999999 999999855322110 000 0
Q ss_pred ---ccccchhhhhhHhhhcCCccc--CCHHHHHHHHHhcCCceeEEEEc
Q 018775 295 ---FGDMGLVFDLVMFAHTTGGKE--RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~--~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
...++..+.+.+.....+-.+ -..+.+.+++++.|+..+.....
T Consensus 220 ~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F 268 (331)
T PF03291_consen 220 DDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNF 268 (331)
T ss_dssp CSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred cCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence 001122222222222211222 26799999999999999887654
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=1e-07 Score=83.26 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---------CCCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---------IPKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~p~~ 245 (350)
..+..+|||||||+|.-+..+++..+ +.+++.+|. ++.++.|++ .++|+++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44688999999999999999998764 679999999 887777654 57899999999762 1359
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|++- -..+.-..++..+.+.|+ |||.+++-+..
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~-~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVK-VGGIIAFDNTL 180 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC-CCeEEEEEcCC
Confidence 999873 223445678999999999 99987664433
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=1.2e-07 Score=90.26 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 242 (350)
..+...++ ..++.+|||+|||+|..+..+++..+..+++++|. +++++.+++ ..++.+..+|... +.
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 34444555 56788999999999999999999887789999999 888776653 2234446777765 22
Q ss_pred --CCccEEEe------cchhccCCh-------HH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 243 --PKADAVFM------KWILHDWDD-------EA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 243 --p~~D~i~~------~~vlh~~~~-------~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
..||+|++ ..+++..++ ++ -.++|+++++.|+ |||+|+........
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs~~~ 373 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCSVLP 373 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCh
Confidence 24999985 245655443 11 2579999999999 99999998766644
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=98.63 E-value=1.6e-07 Score=80.46 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=69.2
Q ss_pred cceEEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecchhccCC-
Q 018775 187 IQSLADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWD- 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~- 258 (350)
+.+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++..|+.. +.. .||+|+++-=.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 6799999999999999999874 4678999999 889888876 4568999999987 444 499999963332111
Q ss_pred -h--------HHHHHHHHHHHhhCCCCCc
Q 018775 259 -D--------EACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 259 -~--------~~~~~~L~~~~~~L~~pgG 278 (350)
+ .-...+++++.++++ ||+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~-~G~ 157 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIAR-QGT 157 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcC-CCE
Confidence 1 224468999999777 665
No 144
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.62 E-value=2.5e-08 Score=64.03 Aligned_cols=49 Identities=49% Similarity=0.817 Sum_probs=41.8
Q ss_pred HHHHHHHhcChhhhhhhCC-CCCCHHHHHhhcC-CCCCCcccHHHHHHHhh
Q 018775 25 MALKSAVELRLADIMHSHG-SPITLPQLASRID-SSCPDIPYLARLMRMLV 73 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~ 73 (350)
.+|++|++|||||.|.+.| +++|.+||+.+++ .+|..+..+.|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999998875 7999999999999 66656779999999985
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=2.1e-07 Score=89.09 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-CccEEEec--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KADAVFMK-- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D~i~~~-- 251 (350)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+ +.+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45678999999999999999888653 458999999 888877654 2468999999987 322 49999861
Q ss_pred ----chh-------ccCChHHH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 ----WIL-------HDWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 ----~vl-------h~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.++ .+++.++. .++|+++.+.|+ |||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Confidence 111 12233322 368999999999 9999998775554
No 146
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.59 E-value=8.9e-07 Score=74.36 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=90.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC-----CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP-----KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p-----~~D~i~~~~vlh~~~~ 259 (350)
...++|||||=+....+. ..+-..++-+|+.+ ..-.+...||++ |.| .||+|.++-||.+.|+
T Consensus 51 ~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred ccceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 347999999975554433 24455688888732 123357889998 776 2999999999999996
Q ss_pred H-HHHHHHHHHHhhCCCCCce-----EEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 260 E-ACVKILKNCRQAIPDKSGK-----LVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 260 ~-~~~~~L~~~~~~L~~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
+ +.-++++++++.|+ |+|. |+|+-+... ..+ .+-.+.+.|.++++.-||..+
T Consensus 120 p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~C--------------------v~N-SRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPC--------------------VTN-SRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred HHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchH--------------------hhc-ccccCHHHHHHHHHhCCcEEE
Confidence 5 57799999999999 9999 776532211 123 566678999999999999999
Q ss_pred EEEEcCC
Q 018775 334 KIISMPA 340 (350)
Q Consensus 334 ~~~~~~~ 340 (350)
+.+..+-
T Consensus 178 ~~~~~~K 184 (219)
T PF11968_consen 178 KYKKSKK 184 (219)
T ss_pred EEEecCe
Confidence 9877654
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=3e-07 Score=88.18 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC---CC-
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---IP- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~p- 243 (350)
+...+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+. ++
T Consensus 242 v~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 333444 5667899999999999999999876 6779999999 887776653 24599999999762 33
Q ss_pred CccEEEecc------hhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 KADAVFMKW------ILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 ~~D~i~~~~------vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.||+|++.- ++.+ ++..+ ...+|+++.+.|+ |||+|+......
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCCC
Confidence 499998731 1111 11112 2468999999999 999998655433
No 148
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.56 E-value=1.9e-07 Score=82.06 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=75.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------CCCeEEEeccCCC-C----C----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------CEGIFHVGGDMFD-A----I---- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~----~---- 242 (350)
++...++|+|||-|.-++..-++.- -.++++|+ +-.++.++. .-.+.|+++|.+. . +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 5788999999999998888776532 36889999 555666654 2246789998886 1 2
Q ss_pred CCccEEEecchhcc-C-ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 PKADAVFMKWILHD-W-DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|.||+|-|.+++|+ | +.+.+.-+|+++.+.|+ |||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEEEE
Confidence 23999999999998 3 45568899999999999 9999874
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=3.5e-07 Score=87.34 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C----C
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A----I 242 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~----~ 242 (350)
+...++ ..++.+|||+|||+|..+..+++... ..+++++|. +++++.+++ ..+|+++.+|..+ + .
T Consensus 244 ~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 244 VAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence 334455 56788999999999999999998753 468999998 888876654 3468999999886 3 1
Q ss_pred C--CccEEEec------chhccCCh-------HH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 P--KADAVFMK------WILHDWDD-------EA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 p--~~D~i~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+ .||.|++- .++++.++ ++ -.++|+++.+.|+ |||+|+......
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcsi 387 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCTL 387 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 1 49999972 34544332 11 2588999999999 999998766444
No 150
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=4.1e-07 Score=75.61 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------C-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------P-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p-~~D~ 247 (350)
...+.+|||+|||+|..++.+++..+..+++..|.+++++..+. ..++++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45688999999999999999998867778999998556654332 467888888765521 2 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+.+.++++ ++....+++.+.++|+ |+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~-~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLK-PNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBT-T-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhC-CCCEEEEEeCEe
Confidence 999999997 6677899999999999 999977766554
No 151
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=2.8e-07 Score=77.96 Aligned_cols=97 Identities=21% Similarity=0.381 Sum_probs=69.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----CC--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA----IP--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~p--~~D~i~~~~v 253 (350)
...+||||||.|.++..+++.+|+..++++|. ...+..+.. ..++.++++|...- ++ +.|-|.+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F- 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF- 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-
Confidence 34999999999999999999999999999998 666554432 68899999998871 23 366555421
Q ss_pred hccCChH-------HHHHHHHHHHhhCCCCCceEEEEee
Q 018775 254 LHDWDDE-------ACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 254 lh~~~~~-------~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
---|+.. -...+|+.+.++|+ |||.|.+...
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD 134 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeC
Confidence 1112211 12478999999999 9999987553
No 152
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.52 E-value=1.1e-06 Score=70.26 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=91.6
Q ss_pred hhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C----
Q 018775 170 KIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---- 241 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---- 241 (350)
...++.+.+..+ ...+.-|||+|.|+|.++.+++++ .++-..+.++. ++-.....+ .+.+.++.||.+. .
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 334555666666 678889999999999999998886 46667777777 777666655 6677799999887 3
Q ss_pred -CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 242 -IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 242 -~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+ .||.|++.-=+-.+|.....++|+++...|+ +||.++.....
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence 22 3999999988888999999999999999999 99999887655
No 153
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.52 E-value=6.2e-07 Score=79.85 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CCCccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IPKADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p~~D~i~~~- 251 (350)
..++.+|||+|||+|..+..+++... ...++.+|. +..++.+++ ..+|+++..|... + .+.||+|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45778999999999999999998764 358999999 887776653 3468899998765 2 2359999862
Q ss_pred -----chhcc-------CChHHH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 -----WILHD-------WDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 -----~vlh~-------~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.++.. |..++. .++|+++.+.|+ |||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCC
Confidence 12221 222222 469999999999 9999987655443
No 154
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=5.4e-07 Score=85.72 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=77.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-C-C-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-I-P-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-p-~~D~i~~~ 251 (350)
..++.+|||+|||+|..+..++... +..+++.+|+ +..++.+++ ..+++++.+|..+ + . + .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5678899999999999999999875 4678999999 888877654 2458899999876 3 2 2 49999861
Q ss_pred ------chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 252 ------WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 252 ------~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.++.. ++.++ -.++|+++.+.|+ |||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCCh
Confidence 22221 22111 2578999999999 99998876665543
No 155
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.50 E-value=2.9e-07 Score=78.17 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=67.9
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d~ 238 (350)
.+++.+. +.+...++|||||.|......+..++--+++|+++ +...+.+.. ..++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3445555 67789999999999999988887766555999998 665543321 46788999999
Q ss_pred CC-CC-----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 239 FD-AI-----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 239 ~~-~~-----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.+ +. .++|+|++++++. +++...-|++....|| ||.+++-.....+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F---~~~l~~~L~~~~~~lk-~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF---DPDLNLALAELLLELK-PGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS--TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEecccc---CHHHHHHHHHHHhcCC-CCCEEEECCCcCCCC
Confidence 98 32 3589999998875 3445566677888899 998887655555443
No 156
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.47 E-value=7.3e-07 Score=79.14 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=63.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCCcc
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPKAD 246 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~~D 246 (350)
...+++.++ ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 345555555 6678899999999999999999983 47899998 778776654 3679999999998 777899
Q ss_pred EEEecchhccCCh
Q 018775 247 AVFMKWILHDWDD 259 (350)
Q Consensus 247 ~i~~~~vlh~~~~ 259 (350)
.|+++ ..++++.
T Consensus 94 ~Vv~N-lPy~i~s 105 (258)
T PRK14896 94 KVVSN-LPYQISS 105 (258)
T ss_pred EEEEc-CCcccCc
Confidence 88774 4444443
No 157
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.46 E-value=7.7e-07 Score=78.83 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=65.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCCcc
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPKAD 246 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~~D 246 (350)
...+++.++ ..++.+|||||||+|.++..++++.+ .++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345556565 66788999999999999999999876 4888888 777776654 4689999999998 665566
Q ss_pred --EEEecchhccCChHHHHHHHHHHHh
Q 018775 247 --AVFMKWILHDWDDEACVKILKNCRQ 271 (350)
Q Consensus 247 --~i~~~~vlh~~~~~~~~~~L~~~~~ 271 (350)
.++.++.-++++. .++.++..
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3444455555443 44555554
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.45 E-value=1.1e-06 Score=79.62 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=89.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEe----ccCCCCC--C--CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVG----GDMFDAI--P--KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~----~d~~~~~--p--~~D~i 248 (350)
...++||||||+|.....++.+.++.+++++|+ +.+++.|+. .++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999888888888999999999 888887764 35777754 2333321 2 49999
Q ss_pred EecchhccCChHH---HHHHHHHHH----------------hhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh
Q 018775 249 FMKWILHDWDDEA---CVKILKNCR----------------QAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH 309 (350)
Q Consensus 249 ~~~~vlh~~~~~~---~~~~L~~~~----------------~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (350)
+|+-=+|.-..+. ...-.+++. +.+. +||.+-++..+..+... ..........
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~-~GGe~~fi~~mi~eS~~-------~~~~~gwfts 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWC-EGGEVAFIKRMIEESKA-------FAKQVLWFTS 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheee-CCcEeeeehHhhHHHHH-------HHhhCcEEEE
Confidence 9986655422221 112233332 2233 45554444443333210 0000000001
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+- ++.-+...+.+.|++.|...+++..+
T Consensus 266 mv-~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 266 LV-SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred Ee-eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11 45558999999999999988888887
No 159
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.40 E-value=9.6e-07 Score=78.99 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCCCc--c
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIPKA--D 246 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p~~--D 246 (350)
..+++.++ ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 44555555 56778999999999999999999875 7899998 888887764 3689999999998 65543 5
Q ss_pred EEEecchhccCC
Q 018775 247 AVFMKWILHDWD 258 (350)
Q Consensus 247 ~i~~~~vlh~~~ 258 (350)
+|++ +.-++.+
T Consensus 108 ~vv~-NlPY~is 118 (272)
T PRK00274 108 KVVA-NLPYNIT 118 (272)
T ss_pred eEEE-eCCccch
Confidence 5554 4444444
No 160
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.6e-07 Score=73.78 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=73.0
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC----------------CCCeEEEec
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV----------------CEGIFHVGG 236 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~ 236 (350)
+++.+++.+.++.++||||+|+|.++..++.- -+....+++|. |+.++..++ ..++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 34444445678999999999999999887753 23444488888 888876543 457889999
Q ss_pred cCCCC---CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 237 DMFDA---IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 237 d~~~~---~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|..+- ..+||.|.+.. .+.++.+++-+-|+ |||+++|
T Consensus 152 Dgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~-~gGrlli 191 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLK-PGGRLLI 191 (237)
T ss_pred CccccCCccCCcceEEEcc--------CccccHHHHHHhhc-cCCeEEE
Confidence 99983 33599999863 23456778888899 9999987
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.38 E-value=1e-06 Score=83.79 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=80.3
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccC--CCCcceEEEecCCchHHHHHHHHHC----CCCcEEEecc-
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG--FDSIQSLADVGGGTGGALAEIVKSY----PHIKGINFDL- 218 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 218 (350)
..|+.+++|+..-..|.+++.. .+.+..... ......|+|||||+|-++...+++. ...+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3467777777766666665533 222222200 0135789999999999987766653 3568888886
Q ss_pred hhHhhhC------CC-CCCeEEEeccCCC-CCC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 219 PHVVATA------PV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 219 ~~~~~~a------~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
+.++... .. .++|+++.+|+.+ ..| .+|+|++...-.....+-..+.|....+.|+ |||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence 5443322 11 6899999999999 666 4999998665443333445677999999999 998776
No 162
>PLN02476 O-methyltransferase
Probab=98.38 E-value=1.3e-06 Score=77.32 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=75.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~ 245 (350)
..+..+|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998765 567889998 777776654 5799999999876 2 1 259
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|+. +-+...-...++.+.+.|+ |||.+++=+..
T Consensus 196 D~VFI-----Da~K~~Y~~y~e~~l~lL~-~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFV-----DADKRMYQDYFELLLQLVR-VGGVIVMDNVL 230 (278)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcC-CCcEEEEecCc
Confidence 99987 3234456788999999999 99987663333
No 163
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.37 E-value=1e-06 Score=73.60 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=69.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCC--eEEEeccCCC--CCCC--ccEEEecchhc---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEG--IFHVGGDMFD--AIPK--ADAVFMKWILH--- 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--i~~~~~d~~~--~~p~--~D~i~~~~vlh--- 255 (350)
...-|||||||+|.-+..|... +...+++|+ |+|++.|.+ .. =.++-+|+-+ |+++ ||.+|+...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999988877764 578899999 999999875 22 2467788887 4443 99776643331
Q ss_pred ------cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 ------DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ------~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|.|......++..++.+|+ +|++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLK-RGARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhc-cCceeEE
Confidence 1244456678888999999 9999775
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.34 E-value=3e-07 Score=78.22 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-------CCCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-------IPKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-------~p~~D 246 (350)
.+..+||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ..+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4578999999999999999999886 589999998 777776654 5799999999875 1 12599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+|++-. ...+-...+..+.+.|+ |||.+++=+
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~-~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLR-PGGVIIADN 155 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEE-EEEEEEEET
T ss_pred EEEEcc-----cccchhhHHHHHhhhcc-CCeEEEEcc
Confidence 999833 34446678999999999 998877643
No 165
>PLN02823 spermine synthase
Probab=98.34 E-value=1.7e-06 Score=79.10 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~ 249 (350)
+...+||.||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+ . . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678999999 888887764 4789999999887 2 2 2499999
Q ss_pred ecchhccCC--hH---HHHHHHH-HHHhhCCCCCceEEE
Q 018775 250 MKWILHDWD--DE---ACVKILK-NCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~--~~---~~~~~L~-~~~~~L~~pgG~lli 282 (350)
+--. ..+. .. -..++++ .+++.|+ |||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcC-CCcEEEE
Confidence 8521 1110 00 0246787 8999999 9998765
No 166
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.33 E-value=1.6e-06 Score=83.08 Aligned_cols=100 Identities=7% Similarity=0.073 Sum_probs=70.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---- 241 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---- 241 (350)
...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +++++.|++ ..+++++.+|+.+.
T Consensus 286 ~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 286 VARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 344444444 4567899999999999999999875 58999999 888887764 34699999998752
Q ss_pred -CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 242 -IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 242 -~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++ .||+|++. -|......+++.+.+ ++ |++.+++.
T Consensus 362 ~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~-~~~ivyvS 399 (443)
T PRK13168 362 PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LG-PKRIVYVS 399 (443)
T ss_pred hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cC-CCeEEEEE
Confidence 21 39999872 222223345555555 57 87776653
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.32 E-value=2.1e-06 Score=73.17 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEe-ccCCC--C---CCCccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVG-GDMFD--A---IPKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~-~d~~~--~---~p~~D~i 248 (350)
..+..+||+||.+.|.-++.++...| +.+.+.+|+ ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999998 888999999 888888775 67788888 57776 2 2459999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+. +-...+-...+..+.+.|+ |||.+++ |.+...
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr-~GGliv~-DNvl~~ 170 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLR-PGGLIVA-DNVLFG 170 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhC-CCcEEEE-eecccC
Confidence 97 3234445688999999999 9987765 444433
No 168
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.31 E-value=1.7e-06 Score=76.47 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=72.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~ 256 (350)
.+..|||||||+|-++.-.+++.. -++..++-.+|.+.|++ .+||++++|.+++ ..|+ .|+|+..-.-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 367999999999999987777643 46777777888887765 7899999999999 7886 999998543333
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+-.+.-.+.--.+++.|+ |.|+++-
T Consensus 256 L~NERMLEsYl~Ark~l~-P~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLK-PNGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcC-CCCcccC
Confidence 324433344446789999 9999874
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=76.69 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~ 244 (350)
..+++... ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 45555555 6678899999999999999999874 46888888 778776653 3689999999998 6777
Q ss_pred ccEEEecchhccCChHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L 266 (350)
+|+|++ +.-++++.+-...+|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 897775 566666665544444
No 170
>PRK04148 hypothetical protein; Provisional
Probab=98.28 E-value=8.9e-06 Score=63.69 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=69.2
Q ss_pred HHHhcccCCCCcceEEEecCCchH-HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC----CccEEE
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGG-ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP----KADAVF 249 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p----~~D~i~ 249 (350)
+.+.++ ...+.+|||||||+|. ++..|.+. +..++++|. +..++.+++ ..+.++..|++++-+ ++|+|.
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444444 3346899999999996 77777764 578999999 888887763 457899999999533 499998
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+ |+.+.+.-+.++.+... .-++|.
T Consensus 83 sir-----pp~el~~~~~~la~~~~---~~~~i~ 108 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN---VPLIIK 108 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC---CCEEEE
Confidence 855 55666666777777655 455543
No 171
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.25 E-value=5.9e-06 Score=77.53 Aligned_cols=96 Identities=16% Similarity=0.074 Sum_probs=68.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCCC---C----CCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFDA---I----PKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~----p~~D~i~ 249 (350)
++.+|||+|||+|.++...+.. ...+++.+|. +.+++.+++ . .+++++.+|+++. . ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876643 3458999999 888887664 2 4789999999872 1 2499999
Q ss_pred ecchhccCCh--------HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDD--------EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~--------~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.-=- .... .....+++.+.+.|+ |||.|+...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~s 339 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFS 339 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 85111 1011 123456677889999 999988643
No 172
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.24 E-value=4e-06 Score=71.06 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=62.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C-CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P-KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p-~~D~i~~~~vl 254 (350)
.+.+|||+|||+|.+++.++.+.. .+++++|. +.+++.+++ ..+++++.+|+.+.. . .||+|++.-=.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999987666543 58999998 777776554 347999999988622 2 49999985332
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEE
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli 282 (350)
+. .-...+++.+.. .++ |++.+++
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~-~~~iv~v 157 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLA-DEALIYV 157 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcC-CCcEEEE
Confidence 21 112234444444 478 8775554
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.24 E-value=5e-06 Score=73.99 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=76.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC-CccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP-KADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p-~~D~i~~ 250 (350)
...+||-||+|.|.++..+++..+--+++.+|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999988889999999 999998775 3899999999887 344 4999998
Q ss_pred cchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 251 KWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 251 ~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
-..=. ..+. -...+++.++++|+ |+|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence 43222 1110 12578999999999 99998875
No 174
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.22 E-value=1e-05 Score=74.06 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=52.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C-CCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I-PKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~-p~~D~i~~~ 251 (350)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 468999999 888887764 3479999999976 2 2 249999974
No 175
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.21 E-value=2e-06 Score=75.15 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHH-HHHHHCCCCcEEEecc-hhHhhhCC----C--------------------
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALA-EIVKSYPHIKGINFDL-PHVVATAP----V-------------------- 227 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~-~l~~~~p~~~~~~~D~-~~~~~~a~----~-------------------- 227 (350)
+.+.+.+..+..++.++||||||.--+.. ..++.+. .++..|. +.-.+..+ +
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 34445555334567899999999854432 1222222 3555565 33222110 0
Q ss_pred ----------CCCeE-EEeccCCC--CC------CC-ccEEEecchhccCC--hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 228 ----------CEGIF-HVGGDMFD--AI------PK-ADAVFMKWILHDWD--DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 228 ----------~~~i~-~~~~d~~~--~~------p~-~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
...|+ ++..|+.+ |+ |+ ||++++..+|.... .++-...++++.++|| |||.|++...
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 12244 67788887 22 33 99999999998754 4467789999999999 9999998775
Q ss_pred eecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc---CC--ceeEEEEee
Q 018775 286 VVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM---PA--LYSIIEAYP 349 (350)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~---~~--~~~vi~~~~ 349 (350)
.-...- ...-. .++ .-..+.+.+++.++++||.+.+...- .. ....+.|+|
T Consensus 201 l~~t~Y---------~vG~~---~F~-~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 201 LGSTYY---------MVGGH---KFP-CLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp SS-SEE---------EETTE---EEE----B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred cCceeE---------EECCE---ecc-cccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 432210 00000 011 12236899999999999999888751 11 234566665
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.18 E-value=4.3e-06 Score=84.47 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCCC---CC-CccEEEec-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFDA---IP-KADAVFMK- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~p-~~D~i~~~- 251 (350)
.+.+|||+|||+|.++..+++.. ..+++.+|. +.+++.+++ . ++++++.+|+++. .+ .||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 346999999 888887764 2 5899999998762 22 59999983
Q ss_pred -chhc-----c-C-ChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 -WILH-----D-W-DDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 -~vlh-----~-~-~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..-. . + ....-..+++.+.+.|+ |||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 1110 0 0 02234578899999999 99988753
No 177
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=3.6e-06 Score=73.31 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=78.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChH-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDE- 260 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~- 260 (350)
.+..++|+|||.|-+... +|.+..++.|+ ...+..+++.+.......|+.+ |.+ .+|.++...++||++..
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 489999999999987632 47788999999 7777777765544667788888 655 49999999999999755
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
....+++++.+.++ |||..+|.-...
T Consensus 121 RR~~~l~e~~r~lr-pgg~~lvyvwa~ 146 (293)
T KOG1331|consen 121 RRERALEELLRVLR-PGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEehh
Confidence 46689999999999 999988865443
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.18 E-value=8.2e-06 Score=72.95 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=73.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC----CCCeE--EEeccCCC---CCCCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV----CEGIF--HVGGDMFD---AIPKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~i~--~~~~d~~~---~~p~~D~i~~~~vl 254 (350)
.+.+|||+|+|.|..+-+....++.. +++.+|. +.+.+.++. ..... ....++.. ++++.|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46799999999999888777777643 5788898 777776543 11111 11122221 34457999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
..++++....+++++.+.+. + .|+|+|+-.+..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-P--VLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-C--cEEEEcCCChHH
Confidence 99999888899999999888 5 999999765543
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.15 E-value=7e-06 Score=71.84 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CC--------CC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AI--------PK 244 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~--------p~ 244 (350)
..+..+||+||+++|.-+..+++.. ++.+++.+|. ++..+.|++ .++|+++.||..+ +. .+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3467899999999999999999876 4678999998 777666654 6899999998876 21 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
||+|++-. ....-...++.+.+.|+ |||.|++ |.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~-~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVK-VGGVIGY-DNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcC-CCeEEEE-cCCC
Confidence 99999732 23345678888999999 9988665 4443
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.15 E-value=4.3e-06 Score=75.04 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
-.+..|||||||+|-++.--+++. ..++.++|-.++++.+.+ .+.|+++.|.+++ .+| ..|+|++.|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 357899999999999999888876 568888888777776654 6779999999988 555 59999987766
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+.+- ..-...+|-.=-+.|+ |||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~-~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLK-EGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccC-CCceEcc
Confidence 5532 2223344444456789 9998763
No 181
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=69.64 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=70.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-CeEEEeccCCC--C-C-C--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-GIFHVGGDMFD--A-I-P--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~--~-~-p--~~D~i~~~~v 253 (350)
...+||||||.|.+...+++++|+..++++++ ...+..+.+ .- ++.++++|... + + + +.|-|.+++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 46899999999999999999999999999998 555544432 33 89999999887 2 2 2 356555421
Q ss_pred hccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---|+-.. ...+|+.+.+.|+ |||.|.+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 11132111 2378999999999 999998755
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.13 E-value=7.2e-05 Score=64.70 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh-hCCCCCCeE-EEeccCCC-C---C----C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA-TAPVCEGIF-HVGGDMFD-A---I----P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~-~---~----p 243 (350)
.+++.++ ....+.+|||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . + +
T Consensus 65 ~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 65 EALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred HHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence 4445444 1235779999999999999999986 3457999999 54554 455555554 33334442 1 1 2
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE-EeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL-VEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.+|+.+.+.. .+|..+.+.|+ | |.+++ +.+-..-... .......+.|-.. ...-.+++.
T Consensus 143 ~~DvsfiS~~----------~~l~~i~~~l~-~-~~~~~L~KPqFE~~~~-~~~~~giv~~~~~-------~~~~~~~~~ 202 (228)
T TIGR00478 143 TFDVSFISLI----------SILPELDLLLN-P-NDLTLLFKPQFEAGRE-KKNKKGVVRDKEA-------IALALHKVI 202 (228)
T ss_pred eeeEEEeehH----------hHHHHHHHHhC-c-CeEEEEcChHhhhcHh-hcCcCCeecCHHH-------HHHHHHHHH
Confidence 3676666543 34888999999 9 65554 3222211110 0000011111100 111356777
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
..+.+.||++..+.+.|
T Consensus 203 ~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 203 DKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHcCCCeEeeEEECC
Confidence 78888999998887754
No 183
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=5.5e-06 Score=69.58 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=92.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCC--C--CeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVC--E--GIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~--~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
+....++|||||.|.....+..+. --+.+..|. -.|++.++.. + .+++..+|-+. ++. ++|+|+.+..+|-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456799999999999999999875 336777887 7788877652 3 34456677766 665 3999999999985
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc------CCHHHHHHHHHhcCC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE------RTEQEWMKLLEQGGF 330 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~e~~~ll~~aGf 330 (350)
.+ +...-+.+++.+|| |+|.++- .+...+.- + .......+.-+-..+ |.. -...++-.+|..|||
T Consensus 150 ~N--dLPg~m~~ck~~lK-PDg~Fia--smlggdTL--y-ELR~slqLAelER~G-GiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TN--DLPGSMIQCKLALK-PDGLFIA--SMLGGDTL--Y-ELRCSLQLAELEREG-GISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hc--cCchHHHHHHHhcC-CCccchh--HHhccccH--H-HHHHHhhHHHHHhcc-CCCCCcChhhhhhhhhhHHhhcCc
Confidence 33 35677899999999 9997763 22211110 0 001111111121222 221 145788999999999
Q ss_pred ceeEE
Q 018775 331 HRCKI 335 (350)
Q Consensus 331 ~~~~~ 335 (350)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 87665
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=0.00017 Score=58.70 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=81.2
Q ss_pred cceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC--CCCccEEEec--chhc
Q 018775 187 IQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA--IPKADAVFMK--WILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~--~p~~D~i~~~--~vlh 255 (350)
..-++|||||+|..+..|++. .|+..+...|+ |++++.-.+ ..++..+..|+.+. ..+.|+++++ ++.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 688999999999999998876 57888899999 887775432 44577888888873 2348888775 2222
Q ss_pred c------------CC-----hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 256 D------------WD-----DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 256 ~------------~~-----~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
. |. .+-..++|..+-+.|. |.|.++++-. +.-..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~----------------------------~~N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFYLVAL----------------------------RANKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEEeeeh----------------------------hhcCH
Confidence 1 11 1113355556666666 7777665321 11136
Q ss_pred HHHHHHHHhcCCceeEEE
Q 018775 319 QEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~ 336 (350)
+|+.+++++-||......
T Consensus 175 ~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAM 192 (209)
T ss_pred HHHHHHHhhcccceeEEE
Confidence 888889999999876553
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=98.09 E-value=1.8e-05 Score=69.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC-CCCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA-IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~-~p~~D~i~~~ 251 (350)
.+.+.+||=||||-|..++++++. |. +++.+|+ +.+++.+++ ..|++++.. +.+. ...||+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 356899999999999999999996 54 8999999 888887765 678888762 3332 2359999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.. .+ ..+.+.++++|+ |||.++.
T Consensus 147 s~----~~---~~fy~~~~~~L~-~~Gi~v~ 169 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLK-EDGVFIS 169 (262)
T ss_pred CC----CC---hHHHHHHHHhcC-CCcEEEE
Confidence 32 12 367899999999 9999876
No 186
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.04 E-value=8.8e-06 Score=71.52 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---C-CC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---A-IP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~p-~~D~ 247 (350)
.+.+.+||=||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 34689999999999999999988766678999999 888887764 4799999999875 2 33 5999
Q ss_pred EEecchhccCChHH--HHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+.-..=-..+... ...+++.+++.|+ |||.+++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 99832211111111 3578999999999 999988754
No 187
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.03 E-value=4.8e-05 Score=64.72 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=89.2
Q ss_pred EEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--C-ccEEEecchhccCC
Q 018775 190 LADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--K-ADAVFMKWILHDWD 258 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~-~D~i~~~~vlh~~~ 258 (350)
|.||||-+|.+.+.|+++..--+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+.+.+ +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988888999998 777776654 6899999999888543 3 788877653 4
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
-....++|.+....++ ...+|++ . +......++++|.+.||.+++=..+
T Consensus 77 G~lI~~ILe~~~~~~~-~~~~lIL-q-----------------------------P~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLS-SAKRLIL-Q-----------------------------PNTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGT-T--EEEE-E-----------------------------ESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhc-cCCeEEE-e-----------------------------CCCChHHHHHHHHHCCCEEEEeEEE
Confidence 5667889998888877 5555554 1 1112688899999999998875554
Q ss_pred ---CCceeEEEEee
Q 018775 339 ---PALYSIIEAYP 349 (350)
Q Consensus 339 ---~~~~~vi~~~~ 349 (350)
+-++-+|.+.+
T Consensus 126 ~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 126 EENGRFYEIIVAER 139 (205)
T ss_dssp EETTEEEEEEEEEE
T ss_pred eECCEEEEEEEEEe
Confidence 33566777765
No 188
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.01 E-value=2.1e-06 Score=80.42 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=68.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEe---cc-hhHhhhCCCCCCeEEEeccC-CC--CCCC--ccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINF---DL-PHVVATAPVCEGIFHVGGDM-FD--AIPK--ADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~i~~~~~d~-~~--~~p~--~D~i~~~~vlh 255 (350)
.....+||||||+|.++..|..+ ++....+ |. +..++.|.+ ..|..+-+-+ .+ |+|+ ||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 44678999999999999999987 3333222 22 233444432 1133332322 12 6774 99999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.|...+- .+|-++-|+|+ |||.++...+-..
T Consensus 193 ~W~~~~g-~~l~evdRvLR-pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG-FLLFEVDRVLR-PGGYFVLSGPPVY 223 (506)
T ss_pred cchhccc-ceeehhhhhhc-cCceEEecCCccc
Confidence 9988763 58889999999 9999987655444
No 189
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.01 E-value=5.1e-05 Score=68.88 Aligned_cols=104 Identities=10% Similarity=0.189 Sum_probs=76.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC----CCCcEEEecc-hhHhhhCCC------CCCeEE--EeccCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY----PHIKGINFDL-PHVVATAPV------CEGIFH--VGGDMFD 240 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~ 240 (350)
..+...++ ++..++|+|||+|.=+..|++.. ...+++.+|+ .+.++.+.. ...+++ +.+|+.+
T Consensus 68 ~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34444444 56689999999998877776654 3467999998 566654432 345665 7888876
Q ss_pred C---CC------CccEE-EecchhccCChHHHHHHHHHHHh-hCCCCCceEEE
Q 018775 241 A---IP------KADAV-FMKWILHDWDDEACVKILKNCRQ-AIPDKSGKLVL 282 (350)
Q Consensus 241 ~---~p------~~D~i-~~~~vlh~~~~~~~~~~L~~~~~-~L~~pgG~lli 282 (350)
+ .+ ...++ ++..++.+++++++..+|+++++ .|+ ||+.|+|
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI 195 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 2 21 14555 45689999999999999999999 999 9999888
No 190
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=5e-05 Score=65.74 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=69.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC----CCC----CccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD----AIP----KADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~p----~~D~i~ 249 (350)
.+..+||+|||+|..+..++...|..+++.+|. +.++..|.+ .+++.+++.++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 456899999999999999999999999999998 666655543 7889988665544 322 389988
Q ss_pred ec--chhccC----------------------ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 250 MK--WILHDW----------------------DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~--~vlh~~----------------------~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
++ ++.++= .-+....++.-+.+.|+ |||.+.+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEE
Confidence 85 444430 01123455666778889 9887765
No 191
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.5e-05 Score=65.34 Aligned_cols=116 Identities=17% Similarity=0.069 Sum_probs=78.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~ 258 (350)
-.+.+|+|+|||||.+++..+-..| .+++++|+ |++++.+++ ..++.|+..|+.+.-..+|.++++-=+--+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 3578999999999999988777654 47888998 898888775 5689999999998555688887742221111
Q ss_pred -hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 259 -DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 259 -~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
..| ..+|.++.++-+ .++- . .+.-+.+-+.+..++.|+++...
T Consensus 123 rhaD-r~Fl~~Ale~s~----vVYs--------------------------i---H~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 123 RHAD-RPFLLKALEISD----VVYS--------------------------I---HKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ccCC-HHHHHHHHHhhh----eEEE--------------------------e---eccccHHHHHHHHHhcCCeEEEE
Confidence 111 345555555533 1110 0 11225788889999999887665
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.97 E-value=1.9e-05 Score=76.65 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-C-----CCCeEEEeccCCC---CCC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-V-----CEGIFHVGGDMFD---AIP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~i~~~~~d~~~---~~p--~~D~i~~~~ 252 (350)
.....+||||||.|.++..+++++|+..++++|. ...+..+. + -.++.++++|+.. .+| +.|.|++.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3578999999999999999999999999999998 44333322 1 4577888887643 344 277766532
Q ss_pred hhccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---|+... ...+|+.++++|+ |||.|.+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEc
Confidence 11132111 2478999999999 999998744
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.96 E-value=2.5e-05 Score=65.26 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=66.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-CCccEEEecchhccCCh
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-PKADAVFMKWILHDWDD 259 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-p~~D~i~~~~vlh~~~~ 259 (350)
+++|||+|.|.-++-|+=.+|+.+++.+|. ..-+...+. -.+++++++.+++ .. ..||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 432222221 4579999998888 33 3599999977653
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...+++-+...++ +||+++..
T Consensus 127 --l~~l~~~~~~~l~-~~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLK-PGGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEE-EEEEEEEE
T ss_pred --HHHHHHHHHHhcC-CCCEEEEE
Confidence 3467888889999 99999864
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.96 E-value=2.2e-05 Score=67.82 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.-+ .++...||+||.|||.++..|+++.. +++.+++ |.++...++ +.+.+++.||+++ +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 455666666 78899999999999999999999854 5666666 777665543 5789999999999 889
Q ss_pred CccEEEe
Q 018775 244 KADAVFM 250 (350)
Q Consensus 244 ~~D~i~~ 250 (350)
.||+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 9999887
No 195
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.94 E-value=1.5e-05 Score=76.23 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-----C-C-CccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-----I-P-KADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~-p-~~D~i~ 249 (350)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ ..+++++.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4567899999999999999999874 37899999 888887764 35799999998651 1 1 389998
Q ss_pred ecchhccCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 250 MKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
+.- |..- ...+++.+.+ ++ |++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~-~~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LK-PERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cC-CCEEEEE
Confidence 721 1111 2355665554 78 8876655
No 196
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.00013 Score=62.02 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=84.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh---CCC---CCCeEEEeccCCC-C-CCC-ccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT---APV---CEGIFHVGGDMFD-A-IPK-ADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~---~~~i~~~~~d~~~-~-~p~-~D~i~~~~vlh~ 256 (350)
..+++|||+|.|.-++-++=.+|+.+++.+|. ..-+.. +.. -++++++++.+++ . .+. ||+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999995 333322 222 5679999998887 3 345 99999876543
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++.=+...++ +||.+++.-. .. ++. -..+.+.....-|+.+.++.
T Consensus 147 -----L~~l~e~~~pllk-~~g~~~~~k~---------------------~~----~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 -----LNVLLELCLPLLK-VGGGFLAYKG---------------------LA----GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----hHHHHHHHHHhcc-cCCcchhhhH---------------------Hh----hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2345666777788 9887653110 00 000 14666677788899998887
Q ss_pred Ec
Q 018775 337 SM 338 (350)
Q Consensus 337 ~~ 338 (350)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 75
No 197
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.93 E-value=9.7e-05 Score=62.51 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC---CCC--CccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD---AIP--KADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~p--~~D~i~ 249 (350)
.+.+.+|||...|-|.++++.+++.. ..++.++- |.+++.|.- ..+|+++.||..+ +++ +||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45689999999999999999888753 25555555 889887764 3478999999987 455 399987
Q ss_pred ecchhccCC------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 250 MKWILHDWD------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 250 ~~~vlh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
|+-| .=-..++-++++++|+ |||+++=. +-.+... . . |.. -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHY--vG~Pg~r--------y---------r-G~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHY--VGNPGKR--------Y---------R-GLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEE--eCCCCcc--------c---------c-cCC-hhHHHHH
Confidence 3311 1124578999999999 99998732 2211110 0 0 111 2466778
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
.|+++||.+++....
T Consensus 264 RLr~vGF~~v~~~~~ 278 (287)
T COG2521 264 RLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHhcCceeeeeehh
Confidence 899999998876654
No 198
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=2.9e-05 Score=65.47 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=62.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C--C-C-ccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I--P-K-ADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~--p-~-~D~i~~ 250 (350)
.+.+|||++||+|.+++.++.+... +++.+|. +.+++.+++ .++++++.+|+++ . . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4689999999999999999998653 7888898 777765543 3578999999965 1 1 1 2 677777
Q ss_pred cchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeeee
Q 018775 251 KWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~~ 287 (350)
---... .....++..+ ...|+ ++| +++.|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~-~~~-iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILE-DTV-LIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCC-CCe-EEEEEecC
Confidence 322211 1122334433 34567 666 45555443
No 199
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.86 E-value=3.4e-05 Score=72.24 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=62.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C-CCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I-PKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~-p~~D~i~~~~vl 254 (350)
++.+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++++.+|+.+ . . ..||+|++.-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC--
Confidence 4579999999999999999864 468999998 888887664 3479999999876 2 1 3499998831
Q ss_pred ccCChH-HHHHHHHHHHhhCCCCCceEEEE
Q 018775 255 HDWDDE-ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 255 h~~~~~-~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|.. -...+++.+. .++ |++.+++.
T Consensus 309 ---Pr~G~~~~~l~~l~-~~~-p~~ivyvs 333 (374)
T TIGR02085 309 ---PRRGIGKELCDYLS-QMA-PKFILYSS 333 (374)
T ss_pred ---CCCCCcHHHHHHHH-hcC-CCeEEEEE
Confidence 111 0124445454 368 88766653
No 200
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.1e-05 Score=64.07 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=69.2
Q ss_pred CcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCC-----CCCccEEE
Q 018775 186 SIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDA-----IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~-----~p~~D~i~ 249 (350)
.+.+||++||| +|..+..++..-|...+.+.|- +..++..++ ..++.++..+.... +..||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46899999999 5555666677778888888887 666665543 34555555555542 12499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+..++.. ++-...+.+.++..|+ |.|+-++
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~-p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLR-PSGRALL 138 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhC-cccceeE
Confidence 9988876 6667789999999999 9998655
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=8.9e-05 Score=64.83 Aligned_cols=91 Identities=12% Similarity=0.267 Sum_probs=64.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC----CCCeEEEeccCCC-CCCC---
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV----CEGIFHVGGDMFD-AIPK--- 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~i~~~~~d~~~-~~p~--- 244 (350)
.+.+++... ..++..|+|||+|.|.++..|+++...+.++-+| +..++..++ .++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 456666666 5668999999999999999999987654444444 555554443 6889999999999 8874
Q ss_pred ccEEEecchhccCChHHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILK 267 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~ 267 (350)
++. +.++.-++++.+-..+++.
T Consensus 96 ~~~-vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 96 PYK-VVANLPYNISSPILFKLLE 117 (259)
T ss_pred CCE-EEEcCCCcccHHHHHHHHh
Confidence 344 4456677766654444444
No 202
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.77 E-value=5.1e-05 Score=68.03 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-C--C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-A--I 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~--~ 242 (350)
+..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +++++.+++ .++++++.+|+.+ . .
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4566777776 56778999999999999999999986 789999999 999888765 3589999999886 1 1
Q ss_pred ----CCccEEEec
Q 018775 243 ----PKADAVFMK 251 (350)
Q Consensus 243 ----p~~D~i~~~ 251 (350)
+.+|.|++-
T Consensus 85 ~~~~~~vDgIl~D 97 (296)
T PRK00050 85 AEGLGKVDGILLD 97 (296)
T ss_pred HcCCCccCEEEEC
Confidence 148888773
No 203
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.76 E-value=0.00062 Score=60.09 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=90.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH-------hhh---C----------------------C-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV-------VAT---A----------------------P----- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~---a----------------------~----- 226 (350)
....+||-=|||.|+++..+++.. ..+.+.+. -.| +.. . +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 457899999999999999999983 34444443 111 110 0 0
Q ss_pred ---------CCCCeEEEeccCCC--CCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 227 ---------VCEGIFHVGGDMFD--AIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 227 ---------~~~~i~~~~~d~~~--~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
...+++...|||.+ +.+ .||+|+..+++-- .+.+.+.|+.++++|| |||..+=+-+..-.-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLk-pgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLK-PGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhc-cCCEEEecCCccccCC
Confidence 03578889999998 333 4999999877753 5568899999999999 9996553332222111
Q ss_pred CCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 292 NNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. .. ......-+.+.+|+.++.++.||++++-..
T Consensus 210 ~-----------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P-----------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-----------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 000012567899999999999999987654
No 204
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00052 Score=59.49 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=73.3
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
..++..++ ..++.+||+-|.|+|.++.++++. .|.-+...+|. ..-.+.|.+ .+++++.+.|+-. .++
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34566677 889999999999999999999997 47778888887 444444433 7899999999988 343
Q ss_pred ----CccEEEecchhccCChHHHHHHHHHHHhhCCCCC-ceEEE
Q 018775 244 ----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 244 ----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg-G~lli 282 (350)
.+|.|++ ++|.+. ..+-.++.+|+ .+ |+|+-
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk-~~g~r~cs 208 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILK-DEGGRLCS 208 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhh-hcCceEEe
Confidence 2999987 566553 33666777888 55 46654
No 205
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.68 E-value=2.2e-05 Score=65.01 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE-eccCCCCCCCccEEEecchhccCChHHH
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV-GGDMFDAIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~-~~d~~~~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
+.+.++||+|+|.|..+..++..+.. +...++ ..|..+.++.. ..+. .-+-.+.--.+|+|.|.++|.---+ .
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~-ynVl~~~ew~~t~~k~dli~clNlLDRc~~--p 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKN-YNVLTEIEWLQTDVKLDLILCLNLLDRCFD--P 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcC-CceeeehhhhhcCceeehHHHHHHHHhhcC--h
Confidence 34689999999999999998887654 333344 56666665411 1111 1122221114999999999864222 3
Q ss_pred HHHHHHHHhhCCCC-CceEEEEeeeecCCCCC-cccccchhhhhhHhhhcCCcccC--CHHHHHHHHHhcCCceeEEEEc
Q 018775 263 VKILKNCRQAIPDK-SGKLVLVEIVVQEDGNN-IFGDMGLVFDLVMFAHTTGGKER--TEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 263 ~~~L~~~~~~L~~p-gG~lli~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
-++|+.++.+|+ | +|++++.=...-..-.+ +......--| ..+. .+ |+.+ ....+-++|+++||.+.....+
T Consensus 186 ~kLL~Di~~vl~-psngrvivaLVLP~~hYVE~N~~g~~~rPd-n~Le-~~-Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLA-PSNGRVIVALVLPYMHYVETNTSGLPLRPD-NLLE-NN-GRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhc-cCCCcEEEEEEecccceeecCCCCCcCCch-HHHH-hc-CccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 588999999999 8 89887643222111110 0000001011 1111 22 3322 2345678899999998776555
Q ss_pred C
Q 018775 339 P 339 (350)
Q Consensus 339 ~ 339 (350)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 4
No 206
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.64 E-value=0.00022 Score=63.08 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=57.4
Q ss_pred CcceEEEecCCchHH-HHHHHHH-CCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-C--CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGA-LAEIVKS-YPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-A--IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~--~p~~D~i~~~ 251 (350)
.+.+|+=||||.=-+ ++.+++. .++..++++|+ +++++.+++ ..+++|+.+|... + ..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999996544 4556654 46788999999 887776653 6899999999876 3 4569999887
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...- ...++-.++|.++.+.++ ||.++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 6554 233445789999999999 99988763
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.63 E-value=0.0001 Score=68.95 Aligned_cols=90 Identities=17% Similarity=0.048 Sum_probs=69.5
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C-CCCccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A-IPKADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~p~~D~i~~~~vlh~ 256 (350)
..+|||++||+|.+++.++...+..++++.|. +..++.+++ .+.+++..+|... . .+.||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999999998876568999999 888887654 3456688899866 2 235999998431
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.. ...++..+.+.++ |||.+.+.
T Consensus 135 -Gs--~~~~l~~al~~~~-~~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVK-RGGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhc-CCCEEEEE
Confidence 11 2357788778889 99999997
No 208
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.63 E-value=7.2e-05 Score=61.85 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCCCCCC-ccE---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFDAIPK-ADA--- 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~p~-~D~--- 247 (350)
....+.|||||-|.++..|+..||+.-+.++++ -.+.+..++ ..++.+...+.+.-.|+ |.-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 457899999999999999999999999999987 555543322 35677777776663343 221
Q ss_pred ---EEecchhccCChHH-----HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 ---VFMKWILHDWDDEA-----CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 ---i~~~~vlh~~~~~~-----~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++.---|.+.... ...++.+..-+|+ +||.++.+..+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~-~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR-EGGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhh-cCceEEEEeeHH
Confidence 22222233322111 2367888889999 999999876544
No 209
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00075 Score=55.58 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=84.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecchhHhhhC-----------CC--CCCeEEEeccCCC-CCC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDLPHVVATA-----------PV--CEGIFHVGGDMFD-AIP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a-----------~~--~~~i~~~~~d~~~-~~p-~~D~ 247 (350)
++++.+|+|+=.|.|.++.-+... .|.-.++.+-..+....+ ++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 889999999999999999887764 233333332212221111 11 2344444444444 323 3777
Q ss_pred EEecchhccC-----ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 248 VFMKWILHDW-----DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 248 i~~~~vlh~~-----~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
++....-|++ +...+.++-+.++++|| |||.++|.|......... .+-..+ ...+..-..
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~a~pG~~~--------~dt~~~------~ri~~a~V~ 190 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHRADPGSGL--------SDTITL------HRIDPAVVI 190 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEeccccCCCCh--------hhhhhh------cccChHHHH
Confidence 7775443332 34457789999999999 999999999877664432 111111 122467777
Q ss_pred HHHHhcCCceeEEE
Q 018775 323 KLLEQGGFHRCKII 336 (350)
Q Consensus 323 ~ll~~aGf~~~~~~ 336 (350)
+..+.+||+...-.
T Consensus 191 a~veaaGFkl~aeS 204 (238)
T COG4798 191 AEVEAAGFKLEAES 204 (238)
T ss_pred HHHHhhcceeeeee
Confidence 88899999876543
No 210
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.60 E-value=3.4e-05 Score=50.28 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=40.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|..|+..|++++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecCc
Confidence 4577888776677899999999999 8899999999999999999873
No 211
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.57 E-value=4.9e-05 Score=64.29 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~v 253 (350)
..++..|+|+-||.|.+++.+++..+...++..|+ |..++.+++ .++|..+.+|..+ ... .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 35689999999999999999999777788999999 888776553 6789999999988 323 499888854
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
| +.+..+|..+.+.++ +||.+
T Consensus 178 ----p-~~~~~fl~~~~~~~~-~~g~i 198 (200)
T PF02475_consen 178 ----P-ESSLEFLDAALSLLK-EGGII 198 (200)
T ss_dssp ----T-SSGGGGHHHHHHHEE-EEEEE
T ss_pred ----h-HHHHHHHHHHHHHhc-CCcEE
Confidence 2 123467888999999 88765
No 212
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00085 Score=56.45 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC-C--------
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA-I-------- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~-~-------- 242 (350)
..++.+.+. .+.++.+|+|+|+..|+.+..+++.. ++..++++|+.++-... .|.++.+|++.+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~----~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP----GVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC----CceEEeeeccCccHHHHHHHHc
Confidence 345666664 57889999999999999999888864 45568999985554333 399999999983 2
Q ss_pred C--CccEEEec---chhccCC------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 P--KADAVFMK---WILHDWD------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 p--~~D~i~~~---~vlh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ ++|+|++- ++=-++. ..-+...+.-+..+|+ |||.+++-.
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~ 159 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKV 159 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEE
Confidence 2 26999852 2211221 1224456667778999 999998744
No 213
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.0018 Score=57.39 Aligned_cols=138 Identities=11% Similarity=0.152 Sum_probs=91.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEec---------------c-------hhHhh---------hCC--------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFD---------------L-------PHVVA---------TAP-------- 226 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D---------------~-------~~~~~---------~a~-------- 226 (350)
...+||-=|||.|.++..|+..++.+++--+. . |-+.. +.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 36899999999999999999988766542100 0 00000 000
Q ss_pred ------CCCCeEEEeccCCC--CCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc
Q 018775 227 ------VCEGIFHVGGDMFD--AIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI 294 (350)
Q Consensus 227 ------~~~~i~~~~~d~~~--~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~ 294 (350)
..+..+.-+|||.+ +.+ .||+|+.++++-- ...+.+.|+.++..|+ |||..+=+.+..-.-....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk-~GGvWiNlGPLlYHF~d~~ 306 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILK-PGGVWINLGPLLYHFEDTH 306 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhcc-CCcEEEeccceeeeccCCC
Confidence 02345557799998 333 3999988876653 4567899999999999 9999876555443322110
Q ss_pred ccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 295 FGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+. ..-. +-+.+.+++..+.+.-||++++-..+
T Consensus 307 --------g~---~~~~-siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 307 --------GV---ENEM-SIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred --------CC---cccc-cccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 0011 45668999999999999999876644
No 214
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.48 E-value=9.1e-05 Score=68.76 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=42.8
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988763 7999998 888887765 3468999998865
No 215
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.43 E-value=0.00075 Score=64.71 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=72.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC-CccEEEe-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP-KADAVFM- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p-~~D~i~~- 250 (350)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-++.+++ ..++.+...|... .++ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467889999999999999999998654 47788887 555544432 3567788888765 234 3999994
Q ss_pred ---c--chhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 ---K--WILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ---~--~vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+ .++. .|+.+++ .++|+++.+.|+ |||+|+-....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence 3 2222 2333322 589999999999 99998655543
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.42 E-value=0.00026 Score=59.32 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHhcccC-CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------C
Q 018775 174 KALVSHYKDG-FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------I 242 (350)
Q Consensus 174 ~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~ 242 (350)
.++.+.++.. ..+..+|||+||++|.++..++++. +..+++++|+..... ...+.++.+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhc
Confidence 3455555511 2246999999999999999999987 678999999843311 13344445554431 1
Q ss_pred ----CCccEEEecch---hcc------CChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 ----PKADAVFMKWI---LHD------WDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 ----p~~D~i~~~~v---lh~------~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+|+|++--. -.+ ...+-+...|.-+.+.|+ |||.+++
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~ 137 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVI 137 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEE
Confidence 24899988431 111 011223445555667789 9998876
No 217
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0013 Score=55.04 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-----CCCeEEEeccCCC---CCCC--ccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-----CEGIFHVGGDMFD---AIPK--ADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~---~~p~--~D~i~~~~vl 254 (350)
.++.+||.||=|-|-....+.++-|..+.++---|.+.++.+. ..+|....|-..+ .+|+ ||-|..--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5789999999999999988888888877776655999888775 5677777764443 4453 9988774332
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.+ -++...+-+.+.++|| |+|++-...-..
T Consensus 180 e~--yEdl~~~hqh~~rLLk-P~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLK-PEGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcC-CCceEEEecCcc
Confidence 22 3567888999999999 999886654433
No 218
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.40 E-value=0.00044 Score=61.52 Aligned_cols=95 Identities=13% Similarity=0.233 Sum_probs=67.0
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK- 244 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~- 244 (350)
.++.+++.++ ..++..|+|||+|.|.++..|++.. .++++++. +..++..++ ..+++++.+|+.+ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3456777777 6689999999999999999999987 57777877 666665543 6899999999998 5443
Q ss_pred ---ccEEEecchhccCChHHHHHHHHHHHhhCC
Q 018775 245 ---ADAVFMKWILHDWDDEACVKILKNCRQAIP 274 (350)
Q Consensus 245 ---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~ 274 (350)
-.+.+.++.-++.+ ..++.++...-+
T Consensus 94 ~~~~~~~vv~NlPy~is----~~il~~ll~~~~ 122 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNIS----SPILRKLLELYR 122 (262)
T ss_dssp CSSSEEEEEEEETGTGH----HHHHHHHHHHGG
T ss_pred hcCCceEEEEEecccch----HHHHHHHhhccc
Confidence 33445555555433 356666666444
No 219
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.37 E-value=0.001 Score=60.03 Aligned_cols=92 Identities=27% Similarity=0.395 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCCC---C-CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFDA---I-PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~-p~~ 245 (350)
++..+||=+|||.|..+.++.+ +| -.+++.+|+ |.|++.++. ..|++++..|.++- - ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 68 558899999 999998873 57999999999982 1 249
Q ss_pred cEEEecchhccCChHH--------HHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEA--------CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~--------~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+++. +++|+. ..++-+-+++.|+ ++|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEEe
Confidence 98886 344332 2466778889999 99998873
No 220
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.35 E-value=0.00015 Score=67.50 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=42.4
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 7899998 888877764 3478999998865
No 221
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=97.32 E-value=0.0004 Score=47.96 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=48.0
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+-.|++.|...++ ++|+.|||+.+|+ +...+++.|..|...|+|.+.+.. ++.|+++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~~----~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGGT----PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCceEeec
Confidence 45567888887643 2999999999999 788999999999999999997531 46787664
No 222
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.30 E-value=0.00072 Score=56.48 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCc---------EEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIK---------GINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-- 243 (350)
.+++..|+|-=||+|.+.++-+...++.. +++.|+ +.+++.++. ...|.+...|+.+ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 56778999999999999998877766666 889998 888876654 5678999999998 633
Q ss_pred CccEEEecc--hhccCCh-HH----HHHHHHHHHhhCCCCC
Q 018775 244 KADAVFMKW--ILHDWDD-EA----CVKILKNCRQAIPDKS 277 (350)
Q Consensus 244 ~~D~i~~~~--vlh~~~~-~~----~~~~L~~~~~~L~~pg 277 (350)
.+|+|++.- -.- .+. .+ -..+++++.++++ |.
T Consensus 106 ~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~-~~ 144 (179)
T PF01170_consen 106 SVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLK-PR 144 (179)
T ss_dssp BSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHST-TC
T ss_pred CCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCC-CC
Confidence 489999842 111 111 11 2366888999999 73
No 223
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00023 Score=63.75 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=64.2
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCc-EEEecchhHhh----hCCC---CCCeEEEeccCCC---CCCCccEEEecchhc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIK-GINFDLPHVVA----TAPV---CEGIFHVGGDMFD---AIPKADAVFMKWILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~----~a~~---~~~i~~~~~d~~~---~~p~~D~i~~~~vlh 255 (350)
..+|||||.|.|.-+-++-.-+|+++ +++++....+. .... ..+......|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46699999999988888777788875 45555422222 1111 2222333444444 456556555554444
Q ss_pred cC----ChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 256 DW----DDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 256 ~~----~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
-+ ........++++...+. |||.|+|+|.--+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCc
Confidence 43 33445568999999999 9999999996544
No 224
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.012 Score=49.02 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-h----hHhhhCCCCCCeEEEeccCCCCC------CCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-P----HVVATAPVCEGIFHVGGDMFDAI------PKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~~ 252 (350)
++++.+||=+|..+|.+..++..--++-.+.+++. | +.+..+++..+|--+-+|...|. +..|+|..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78999999999999999999998777666677765 4 34455555667777778888864 34888876
Q ss_pred hhccCC-hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 253 ILHDWD-DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 253 vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+.. ++++.-+..|+..-|+ +||.++++=-...-+... ...--..+-.+.|++.||+
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk-~~G~~~i~iKArSIdvT~-------------------dp~~vf~~ev~kL~~~~f~ 208 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLK-KGGYVVIAIKARSIDVTA-------------------DPEEVFKDEVEKLEEGGFE 208 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhcc-cCCeEEEEEEeecccccC-------------------CHHHHHHHHHHHHHhcCce
Confidence 333 3456667789999999 999888755444433221 0000122223567888999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
+.++..+.. .+.+|.+++
T Consensus 209 i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 209 ILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred eeEEeccCCcccceEEEEEee
Confidence 999988844 366666654
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0024 Score=52.81 Aligned_cols=102 Identities=10% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~ 257 (350)
.-.+++|||+|.|+|..++.-++... ..++..|+ |......+- .-.|.++..|..-+.+.+|+++.+.++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~- 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYN- 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecC-
Confidence 55789999999999999988777642 23444455 544443332 45677888887774456999999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
......++. ..+.++..|-.++|.++.++.
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 444556677 555554155566655554443
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.25 E-value=0.0038 Score=53.06 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-h----hHhhhCCCCCCeEEEeccCCCCC------CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-P----HVVATAPVCEGIFHVGGDMFDAI------PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~ 251 (350)
+.++.+||-+|.++|.+...+..- .|+-.+..++. | +.++.+++..+|--+-.|...|. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 778999999999999999998874 45667777776 5 34445555667777778888752 348988862
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+-+ ++++.-++.++...|| +||.+++.=-...-+... ...-...+=.+.|++.||+
T Consensus 151 -VaQ---p~Qa~I~~~Na~~fLk-~gG~~~i~iKa~siD~t~-------------------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 -VAQ---PDQARIAALNARHFLK-PGGHLIISIKARSIDSTA-------------------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp --SS---TTHHHHHHHHHHHHEE-EEEEEEEEEEHHHH-SSS-------------------SHHHHHHHHHHHHHCTTCE
T ss_pred -CCC---hHHHHHHHHHHHhhcc-CCcEEEEEEecCcccCcC-------------------CHHHHHHHHHHHHHHcCCC
Confidence 222 3566778889999999 999999854332211110 0000122234567889999
Q ss_pred eeEEEEcCCc---eeEEEEe
Q 018775 332 RCKIISMPAL---YSIIEAY 348 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~ 348 (350)
..+...+..+ +.++.++
T Consensus 207 ~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEEE
T ss_pred hheEeccCCCCCCcEEEEEE
Confidence 9999888543 5565554
No 227
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.19 E-value=0.00048 Score=63.63 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC--ccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK--ADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~--~D~i~~~~ 252 (350)
..+...++|+|||.|.....+.. +.....++++. +.-+..+.. .+...++.+|+.+ ++++ ||.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34566899999999999987665 45667888887 444333322 4555568889998 6764 99999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
+..|.++. ..++++++++++ |||.+++.|.+.....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~k-pGG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLK-PGGLFIVKEWIKTAKL 222 (364)
T ss_pred ecccCCcH--HHHHHHHhcccC-CCceEEeHHHHHhhhc
Confidence 99987765 478999999999 9999999888776543
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.16 E-value=0.0029 Score=50.86 Aligned_cols=96 Identities=24% Similarity=0.319 Sum_probs=64.7
Q ss_pred EEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-C--CC---eEEEeccCCC---CCC---CccEEEecchhc
Q 018775 190 LADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-C--EG---IFHVGGDMFD---AIP---KADAVFMKWILH 255 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---i~~~~~d~~~---~~p---~~D~i~~~~vlh 255 (350)
++|+|||+|... .+....+. ..++++|. +.++..++. . .. +.+..+|... ++. .+|++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 33333333 36777887 666665332 1 11 5777777664 333 489994444444
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
+.. ....++++.+.++ |+|.+++........
T Consensus 131 ~~~---~~~~~~~~~~~l~-~~g~~~~~~~~~~~~ 161 (257)
T COG0500 131 LLP---PAKALRELLRVLK-PGGRLVLSDLLRDGL 161 (257)
T ss_pred cCC---HHHHHHHHHHhcC-CCcEEEEEeccCCCC
Confidence 433 5678999999999 999999887765543
No 229
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.15 E-value=0.0027 Score=56.27 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=95.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------CC-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------PK----- 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p~----- 244 (350)
.+...|+.+|||-=....++... +++++.-+|.|++++.-++ ..+..++..|+.... .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999987777776432 3578888898988763322 568889999987321 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh-cC-Cc--ccCCHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH-TT-GG--KERTEQE 320 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~s~~e 320 (350)
.-++++..++.+++.+++.++|+.+.+... ||+.++ .|.+.+..... .. ........... .. .. ...+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~-~gs~l~-~d~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSA-PGSRLA-FDYVRPLDGEW-RA--GMRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCC-CCcEEE-EEeccccchhH-HH--HHHHHHHHhhhcccccccccCCChhh
Confidence 348888999999999999999999999988 877655 56555421110 00 00000000000 00 00 1236799
Q ss_pred HHHHHHhcCCceeEE
Q 018775 321 WMKLLEQGGFHRCKI 335 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~ 335 (350)
+.++|++.||+....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.14 E-value=0.00077 Score=55.19 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=71.7
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCccEEEecchhccCCh
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDD 259 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~ 259 (350)
..+.|+|.|+|-++.-.++. .-+++.++. |.....+.+ .++++++.+|..+ ++..+|+|+|...=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999998755554 346777777 776666654 5789999999999 8878999998543222234
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
++-+.+++.+.+.|+ -.++++-.+.
T Consensus 112 E~qVpV~n~vleFLr-~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLR-YDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhh-cCCccccHHH
Confidence 555788999999999 8888875443
No 231
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.13 E-value=0.00066 Score=49.77 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|.|+.|+..|++.+... ++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 4567777664358999999999999 88999999999999999999742 4678877643
No 232
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.13 E-value=0.00094 Score=61.03 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-------CCCCcEEEecc-hhHhhhCC------C--CCCeEEEeccCCC-C-CC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-------YPHIKGINFDL-PHVVATAP------V--CEGIFHVGGDMFD-A-IP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~------~--~~~i~~~~~d~~~-~-~p-- 243 (350)
..++.+|+|-.||+|.++.++.+. .+..+++++|. +.++..++ . .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 556789999999999999888774 47788999998 76665443 1 3345688899887 2 32
Q ss_pred -CccEEEec--chhccCCh-----------------HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMK--WILHDWDD-----------------EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~--~vlh~~~~-----------------~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++ +....|.. ..-..++.++.+.|+ +||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEe
Confidence 49999985 33331211 111258899999999 999977543
No 233
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.12 E-value=0.013 Score=49.69 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=86.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC---CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP---KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p---~~D~i~~~~vl 254 (350)
.+.++.||||-++.+.+.|++.++..+++..|. +...+.|.+ .+++++..+|-+.++. ..|+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 455699999999999999999999999999997 655554432 7899999999988542 388887655
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
++-.-...+|.+-.+-|+ .=-++++ .+ --...+++++|.+.+|.++.
T Consensus 94 --MGG~lI~~ILee~~~~l~-~~~rlIL-----QP-------------------------n~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLK-GVERLIL-----QP-------------------------NIHTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhc-CcceEEE-----CC-------------------------CCCHHHHHHHHHhCCceeee
Confidence 445667788888888887 3223332 11 11267788889999998766
Q ss_pred EEEc
Q 018775 335 IISM 338 (350)
Q Consensus 335 ~~~~ 338 (350)
=.-+
T Consensus 141 E~il 144 (226)
T COG2384 141 ETIL 144 (226)
T ss_pred eeee
Confidence 5444
No 234
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.12 E-value=0.0014 Score=52.49 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-C-CCCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-A-IPKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~-~p~~D~ 247 (350)
..+..+|+|+|||.|.++..|+.. .++.+++++|. +..++.+.. ..++++..++... . ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 467899999999999999999982 27899999998 666665543 3566777776655 2 234778
Q ss_pred EEecchhccCCh
Q 018775 248 VFMKWILHDWDD 259 (350)
Q Consensus 248 i~~~~vlh~~~~ 259 (350)
++.-+.--++++
T Consensus 103 ~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 103 LVGLHACGDLSD 114 (141)
T ss_pred EEEeecccchHH
Confidence 887666655554
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.09 E-value=0.003 Score=57.27 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCC--C-CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI--P-KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--p-~~D~i~~~~vlh~~~~~ 260 (350)
+.++.++|||||++|.++..++++ +.+++.+|...+........+|++..+|.+... + ++|+++|--+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 457899999999999999999997 559999998666666666889999999998832 2 499999855433 2
Q ss_pred HHHHHHHHHHhhCCCCC
Q 018775 261 ACVKILKNCRQAIPDKS 277 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pg 277 (350)
..+.+-+.+.+. .|
T Consensus 283 --~rva~lm~~Wl~-~g 296 (357)
T PRK11760 283 --ARVAELMAQWLV-NG 296 (357)
T ss_pred --HHHHHHHHHHHh-cC
Confidence 245666666776 54
No 236
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00092 Score=52.40 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--C-ccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--K-ADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~-~D~i~~~~ 252 (350)
-.+..++|+|||.|-+++... .+.+-.++++|+ |+.++.+.. .-.+.+.+.|+.++.+ . ||..+.+-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 358899999999999994332 234457899999 999998765 4567888899988433 2 88887753
No 237
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.013 Score=50.30 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc--hhHhhhCCCCCCeEEEec-cCCCC----CC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL--PHVVATAPVCEGIFHVGG-DMFDA----IP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~i~~~~~-d~~~~----~p-~~D 246 (350)
..++.|+ ....+..+||||+.||.|+..++++.. -.++++|. .+..-..+...||..+.. |+..- +. ..|
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 3455555 235689999999999999999998743 36777775 445555666777776654 44331 22 367
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE-eeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV-EIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
++++- .+--....+|-.+...++ |++-++.. -+-....... ......+.+-. ....-.+++.+++
T Consensus 147 ~~v~D-----vSFISL~~iLp~l~~l~~-~~~~~v~LvKPQFEagr~~-v~kkGvv~d~~-------~~~~v~~~i~~~~ 212 (245)
T COG1189 147 LIVID-----VSFISLKLILPALLLLLK-DGGDLVLLVKPQFEAGREQ-VGKKGVVRDPK-------LHAEVLSKIENFA 212 (245)
T ss_pred eEEEE-----eehhhHHHHHHHHHHhcC-CCceEEEEecchhhhhhhh-cCcCceecCcc-------hHHHHHHHHHHHH
Confidence 77762 222235678999999999 98876652 2211111110 00000111110 1222467888999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
.+.||++..+.+.+
T Consensus 213 ~~~g~~~~gl~~Sp 226 (245)
T COG1189 213 KELGFQVKGLIKSP 226 (245)
T ss_pred hhcCcEEeeeEccC
Confidence 99999999887653
No 238
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.95 E-value=0.00056 Score=46.13 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=46.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.+|.--.++.|+..|... +|.|+.|||+.+|+ +...+.+-|+.|...|+|+...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 4556666788888999333 79999999999999 8899999999999999999876
No 239
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.94 E-value=0.0015 Score=58.26 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=74.6
Q ss_pred cceEEEecCCchHHHHHHHHHC--------------------CCCcEEEecc-h--hHhhhCCC----------------
Q 018775 187 IQSLADVGGGTGGALAEIVKSY--------------------PHIKGINFDL-P--HVVATAPV---------------- 227 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~-~--~~~~~a~~---------------- 227 (350)
..+||-||||.|.-..+++..+ +.++++.+|+ + .+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998777766654 2257888887 3 45443221
Q ss_pred -------CCCeEEEeccCCC-CC---------CCccEEEecchhccC---ChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 228 -------CEGIFHVGGDMFD-AI---------PKADAVFMKWILHDW---DDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~~---------p~~D~i~~~~vlh~~---~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-.++|.+.|+.+ .. |..|+|.+.++++.+ +..+..++|.++-+.++ ||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICP-PGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEcCCC
Confidence 2358899999998 32 237899888777653 56678899999999999 999999998544
No 240
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.94 E-value=0.00044 Score=56.31 Aligned_cols=61 Identities=26% Similarity=0.514 Sum_probs=45.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---CC--C-ccEEEec
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---IP--K-ADAVFMK 251 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~p--~-~D~i~~~ 251 (350)
.|+|+-||.|..++.+++.+. +++.+|+ |..++.++. .++|.++.+|+++. +. . +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999865 5777887 777776653 57999999999982 22 2 7999873
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.87 E-value=0.0031 Score=62.00 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=46.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCC--------CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC--------C
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPH--------IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA--------I 242 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--------~ 242 (350)
...+|||.|||+|.++..++...+. ..++++|+ +..++.++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4679999999999999999886642 46788898 777665542 12355566665431 1
Q ss_pred CCccEEEec
Q 018775 243 PKADAVFMK 251 (350)
Q Consensus 243 p~~D~i~~~ 251 (350)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 349999995
No 242
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.014 Score=51.93 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=101.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC--CCCcEEEecchhHhhhCC----C------------------------CCCeEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY--PHIKGINFDLPHVVATAP----V------------------------CEGIFH 233 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~----~------------------------~~~i~~ 233 (350)
..+...|+.+|||.-.+...|...+ +.++++-+|.|++++.-- + +.+..+
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3478999999999999999999987 888999999977654211 0 234445
Q ss_pred EeccCCC--CC----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccch
Q 018775 234 VGGDMFD--AI----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGL 300 (350)
Q Consensus 234 ~~~d~~~--~~----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~ 300 (350)
+..|..+ .+ .+ .-+++...+|-++++++...+++-+.+..+ .+.+++.|.+.+.++. +.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~--~a~fv~YEQi~~~D~F------g~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE--NAHFVNYEQINPNDRF------GK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC--cccEEEEeccCCCChH------HH
Confidence 5555553 10 01 446677899999999999999999988876 6788999998865542 22
Q ss_pred hhhhhHhhh-cC-Cc--ccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 301 VFDLVMFAH-TT-GG--KERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 301 ~~~~~~~~~-~~-~~--~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
++--+.... ++ +| ...|.+..++-+.++||..+.+..+
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 211111100 00 01 1237888899999999999887654
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.82 E-value=0.0021 Score=55.66 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~~vlh 255 (350)
.....+|+|||||.--++.-.....|+.+++++|+ ...++.... ....++...|.....| .+||.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 34589999999999999988888888899999999 777776553 5677888889998433 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC-CHHHHHHHHHhcCCceeE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER-TEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~ll~~aGf~~~~ 334 (350)
.+...+. ..--++-+.++ .-.++|..+...-.... . |... -..++.+++.+-|+.+-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~--~~~~vVSfPtrSL~gR~-----------------~-gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALR--SPHVVVSFPTRSLGGRN-----------------K-GMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHST-THHHHHHHHSC--ESEEEEEEES------------------------T-THHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHhc-chHHHHHHHhC--CCeEEEeccccccccCc-----------------c-ccccCHHHHHHHhcccCCceeee
Confidence 8765543 22233444444 23555554444332210 0 2221 245667777777877443
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0076 Score=49.51 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=65.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEec-cCCCC---------CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGG-DMFDA---------IP 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~p 243 (350)
++-+++. .+.+..+|||+||..|..+.-..++. |+--+.++|+-++.. ...++++.+ |+.+| .|
T Consensus 59 EindKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 59 EINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred eehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCC
Confidence 3444454 35789999999999999998877764 999999999743321 223445555 55553 24
Q ss_pred C--ccEEEecc--------hhccC-ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 K--ADAVFMKW--------ILHDW-DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 ~--~D~i~~~~--------vlh~~-~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
. .|+|++-. ++.|. ..+-|..+|.-....+. |+|.+++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvc 182 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVC 182 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEE
Confidence 3 78887622 22221 12234455666667778 9999886
No 245
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.77 E-value=0.0017 Score=57.16 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...+.++++.|||+++|+ +...+.|+|..|+..||+++++. +++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHHH
Confidence 4567777763345679999999999 88999999999999999999984 46899988654
No 246
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.64 E-value=0.0022 Score=46.15 Aligned_cols=48 Identities=17% Similarity=0.430 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.+|||+++++ ++..++++++.|...|+++...+ ++|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~G----~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSRG----RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEETS----TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecCC----CCCceeecCCH
Confidence 46999999999999 89999999999999999998752 25789877543
No 247
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.62 E-value=0.0016 Score=41.36 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=38.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
++.+...|.+ +|.++.||++.+|+ +...+.+.|+.|...|++.+
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4567778887 79999999999999 89999999999999999974
No 248
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.61 E-value=0.0027 Score=56.91 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKW 100 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~ 100 (350)
+.|++.|.+...++|+.|||+.+|+ +...+.|+|..|+..||+.+++. .++|++.+....
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~ 90 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAFI 90 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHHH
Confidence 4456666554478999999999999 88999999999999999998753 488998876543
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.60 E-value=0.0011 Score=50.14 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred EEecCCchHHHHHHHHHCCCC---cEEEecc-h---hHhhhCCC---CCCeEEEeccCCCC---C--CCccEEEecchhc
Q 018775 191 ADVGGGTGGALAEIVKSYPHI---KGINFDL-P---HVVATAPV---CEGIFHVGGDMFDA---I--PKADAVFMKWILH 255 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~~---~--p~~D~i~~~~vlh 255 (350)
||||+..|..+..+++..+.. +++.+|. + ..-+..++ .++++++.+|..+- + +++|+++.=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876544 5889998 5 23333332 57899999998762 2 2589888732 22
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. .+....-++.+.+.|+ |||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~-~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLA-PGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEE-EEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 2 3456677999999999 999888754
No 250
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.60 E-value=0.00082 Score=46.40 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=41.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|-.. ++.|++|||+.+|+ +...+.+.|+-|...|++++.+
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 345566666433 79999999999999 8999999999999999999997
No 251
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.55 E-value=0.0032 Score=50.31 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=42.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.|+|||||.|.++..+++.+|..+++.+|. |.+.+.+++ ..++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999998 777776654 2457777776665
No 252
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.54 E-value=0.0028 Score=55.88 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.+.....|+|+.|||+++|+ +...+.|+|..|+..||+++++ ++|++.+....+
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~~-------~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSDG-------RLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC-------CEEEecHHHHHH
Confidence 4567777654478999999999999 8899999999999999999864 789988765433
No 253
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.53 E-value=0.016 Score=58.90 Aligned_cols=112 Identities=18% Similarity=0.071 Sum_probs=71.4
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH------------C------------------------------C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS------------Y------------------------------P 209 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------~------------------------------p 209 (350)
++..++..-.| ..++..++|-.||+|.++++.+.. | .
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 34455554442 145789999999999999886542 1 1
Q ss_pred CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC----CccEEEecc-hhccCC-hHHHHHHHHHHHhh--
Q 018775 210 HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP----KADAVFMKW-ILHDWD-DEACVKILKNCRQA-- 272 (350)
Q Consensus 210 ~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p----~~D~i~~~~-vlh~~~-~~~~~~~L~~~~~~-- 272 (350)
..+++++|+ +.+++.++. .++|.+..+|+.+ +.+ .+|+|+++- .-.-+. ..+...+.+.+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 888887764 4679999999987 332 399999861 111122 23334444443333
Q ss_pred -CCCCCceEEEEee
Q 018775 273 -IPDKSGKLVLVEI 285 (350)
Q Consensus 273 -L~~pgG~lli~e~ 285 (350)
.. ||+++.++..
T Consensus 336 ~~~-~g~~~~llt~ 348 (702)
T PRK11783 336 QQF-GGWNAALFSS 348 (702)
T ss_pred HhC-CCCeEEEEeC
Confidence 34 7888877553
No 254
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.53 E-value=0.0032 Score=56.29 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=48.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...+.++|+.|||+++|+ +...+.|+|..|+..|||.+++. .++|++.....
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHHH
Confidence 4456666554468999999999999 88999999999999999999753 47899887543
No 255
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0065 Score=55.49 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CC-CCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AI-PKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-p~~D~i~~~~v 253 (350)
..+.+|||.=+|.|.+++.+++... .+++.+|+ |..++.+++ .++|+.+.||..+ +. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 3589999999999999999998743 34999999 988887654 5679999999998 33 45999998663
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
- .+.+++..+.+.++ +||.+...+....+.
T Consensus 266 ~------~a~~fl~~A~~~~k-~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLK-DGGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhh-cCcEEEEEeccchhh
Confidence 3 23577889999999 999998888776554
No 256
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.46 E-value=0.012 Score=40.23 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.++|..+||+.+|+ +...+.+.|+.|...|++...+ .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 8899999999999999999986 36787653
No 257
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.40 E-value=0.0042 Score=42.66 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=40.3
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++..|....++++..+|++.+++ +...+.+.++.|...|+|++.....+.-...|++|+.
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred HHHHHHccCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 34444411279999999999999 8899999999999999998875321111235788765
No 258
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.38 E-value=0.0036 Score=39.83 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=37.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCcee
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFA 79 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~ 79 (350)
.+..|+..|.++ +++|..|||+.+|+ +...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 355678888886 58999999999999 8999999999999999985
No 259
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.37 E-value=0.022 Score=51.43 Aligned_cols=150 Identities=12% Similarity=0.023 Sum_probs=93.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCC-CCC------Ccc--
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFD-AIP------KAD-- 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~p------~~D-- 246 (350)
.+...|+-+|||-=.-+-++-.- +.+++.-+|.|++++.-++ ..++++++.|+++ +.+ +||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999954444333221 2477888888999885432 3489999999995 433 244
Q ss_pred ---EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc--ccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 247 ---AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI--FGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 247 ---~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
++++..++-+++.+...++|+++...+. ||..++............. ...............-..-......++
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~-~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 248 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSA-PGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEI 248 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCC-CCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHH
Confidence 8889999999999999999999999999 8877765443111111000 000000000000000000011247899
Q ss_pred HHHHHhcCCceeEEE
Q 018775 322 MKLLEQGGFHRCKII 336 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~ 336 (350)
..++.+.||......
T Consensus 249 ~~~l~~~g~~~~~~~ 263 (297)
T COG3315 249 ETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHhcCEEEEecC
Confidence 999999999988763
No 260
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.36 E-value=0.0046 Score=55.07 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|..|||+.+|+ +...+.|+|+.|+..||++++.. ++.|++++....+
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHHHH
Confidence 4566666554357999999999999 88999999999999999999753 4789998765443
No 261
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.35 E-value=0.006 Score=56.90 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCCC----C---CccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDAI----P---KADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~----p---~~D~i~ 249 (350)
.+.+|||+=|=||.++...+.... .++|.+|. ..+++.+++ ..++.++.+|.++-+ . .||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 389999999999999988777532 28999998 777777764 567899999999821 1 499999
Q ss_pred ec-chhcc-----CC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MK-WILHD-----WD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~-~vlh~-----~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+- -.+-. |+ ..+-..++..+.+.|+ |||.+++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 81 00000 21 2345688999999999 999998754
No 262
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.35 E-value=0.0047 Score=54.83 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=47.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|... +++|+.|||+++|+ +...+.|+|+.|+..||+.++.. +++|++.+...
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHH
Confidence 4455666554 58999999999999 88999999999999999999753 47899987654
No 263
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=96.27 E-value=0.0073 Score=38.14 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
-++|..+||+.+++ +...+.+.|+.|...|++.... +.|.++
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~-------~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG-------GRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC-------CEEEEC
Confidence 47899999999999 8899999999999999999875 667643
No 264
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.25 E-value=0.0034 Score=52.55 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=63.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C----CCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I----PKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~----p~~D~i~~ 250 (350)
.+.+|||+=||+|.++++.+.+.. .+++.+|. +..+...++ .++++++.+|.... . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 589999999999999999888753 36788887 666665543 45789999997651 1 24999998
Q ss_pred cchhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~~ 288 (350)
--=. .... ....++..+. ..|+ ++|. +|+|....
T Consensus 121 DPPY-~~~~-~~~~~l~~l~~~~~l~-~~~~-ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGL-YYEELLELLAENNLLN-EDGL-IIIEHSKK 156 (183)
T ss_dssp --ST-TSCH-HHHHHHHHHHHTTSEE-EEEE-EEEEEETT
T ss_pred CCCc-ccch-HHHHHHHHHHHCCCCC-CCEE-EEEEecCC
Confidence 3211 1111 1255677666 7788 7765 45565554
No 265
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.24 E-value=0.0057 Score=43.32 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=42.6
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..+.. ++.+..+|+..+++ +...+.+.|+.|...|++... ++.|.+|+.+..+.
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 4455543 79999999999999 899999999999999999775 48999999987444
No 266
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=96.23 E-value=0.01 Score=48.68 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=40.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
+++|+++||+++++ ++..+.++|..|...|||....+ ++|.|.+...
T Consensus 24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG----~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG----PGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC----CCCCeeccCC
Confidence 68999999999999 89999999999999999998642 2577887643
No 267
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.23 E-value=0.027 Score=48.00 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhC-------CCCCCeEEEeccCCCCC---------CCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATA-------PVCEGIFHVGGDMFDAI---------PKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~i~~~~~d~~~~~---------p~~ 245 (350)
+-+.++++|||.=+|.-+..++.+.|. -+++.+|. +...+.+ .-...|+++.++..+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446899999999999999999988765 57788887 5554443 33788999999887621 138
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
|.++. -+|-+ .-.....++-++++ +||.|++-....+.
T Consensus 151 DfaFv----DadK~-nY~~y~e~~l~Llr-~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFV----DADKD-NYSNYYERLLRLLR-VGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEE----ccchH-HHHHHHHHHHhhcc-cccEEEEeccccCC
Confidence 98876 22322 34478899999999 99987764444444
No 268
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.18 E-value=0.0093 Score=55.65 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred cceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC--C--CCccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA--I--PKADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~--p~~D~i~~~~vl 254 (350)
..+|||+-||+|..+++.+.+.++ -+++..|+ +..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 468999999999999999998644 46888898 888876654 23578899988862 1 3499998843 2
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. . ...++..+.+.++ +||.|.+.-
T Consensus 124 -G--s--~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 124 -G--T--PAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred -C--C--cHHHHHHHHHhcc-cCCEEEEEe
Confidence 1 1 1367889999999 999999974
No 269
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.13 E-value=0.23 Score=46.38 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=63.3
Q ss_pred CcceEEEecCCchHHHHHHH--------HH-------CCCCcEEEecchh-----HhhhCC---------------CCCC
Q 018775 186 SIQSLADVGGGTGGALAEIV--------KS-------YPHIKGINFDLPH-----VVATAP---------------VCEG 230 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---------------~~~~ 230 (350)
+..+|+|+|||+|..+..+. ++ -|..++..-|+|. ...... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997764432 22 2467777777752 111110 0111
Q ss_pred ---eEEEeccCCC-CCCC--ccEEEecchhccCCh--H----------------------------------HHHHHHHH
Q 018775 231 ---IFHVGGDMFD-AIPK--ADAVFMKWILHDWDD--E----------------------------------ACVKILKN 268 (350)
Q Consensus 231 ---i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~ 268 (350)
+.-++|.|.. -+|+ -+++++++.||-++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678887 4664 889999999986541 0 12234444
Q ss_pred HHhhCCCCCceEEEEeeeecC
Q 018775 269 CRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 269 ~~~~L~~pgG~lli~e~~~~~ 289 (350)
=.+=|. |||++++.-.-+++
T Consensus 223 Ra~ELv-pGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMK-RGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhc-cCcEEEEEEecCCC
Confidence 445578 99999997766654
No 270
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.10 E-value=0.0028 Score=45.26 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=48.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCC-CCCeEecChhch
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG-DETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~-~~~~~~~t~~s~ 99 (350)
+++++...|... ++++..+|.+.+|+ +...+.+.|+.|...|+|+....-.+. |...|++|+.++
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 466777788764 69999999999999 889999999999999999987642211 223588888876
No 271
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=96.10 E-value=0.0097 Score=39.95 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=36.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+.|....+|++..|||+.+|+ +...++++|..|+..|.+.+..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 345555541279999999999999 8999999999999999999864
No 272
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=96.07 E-value=0.0098 Score=39.38 Aligned_cols=45 Identities=11% Similarity=0.301 Sum_probs=40.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.|... +.+|+++||+.+|+ ++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 356677765 79999999999999 8899999999999999999997
No 273
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=96.06 E-value=0.0077 Score=41.18 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=45.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCC--CcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCP--DIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~--~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
|++.|.+.++|++..+|++.++...- ++..+++.|++|...|++.+.+ .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 45667666689999999998865221 3589999999999999888776 45667887654
No 274
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=96.03 E-value=0.0054 Score=42.42 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=37.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.|.+. +.+|..|||.++++ ++..++.+|+.|+..|+|++..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 45667665 79999999999999 8999999999999999999986
No 275
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.00 E-value=0.0095 Score=45.73 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 21 FADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 21 ~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+++|.--.++.++..|... ++.++.||++.+++ ++..+.+.|+.|...|+|....
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 3456777777889999999753 68999999999999 8899999999999999998876
No 276
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.019 Score=54.63 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C-C
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A-I 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~ 242 (350)
.....+.+. ..+..+|+|+=||.|.++..|+++ ..+++++++ +++++.|++ -++++|+.++.++ + .
T Consensus 282 ~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 282 YETALEWLE--LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHh--hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 344444444 567789999999999999999965 457888998 888887765 4559999999988 2 2
Q ss_pred C---CccEEEecchhccCChHHHH-HHHHHHHhhCCCCCceEEE
Q 018775 243 P---KADAVFMKWILHDWDDEACV-KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p---~~D~i~~~~vlh~~~~~~~~-~~L~~~~~~L~~pgG~lli 282 (350)
. .+|+|+. +-|..=+. .+++.+.+. + |-..++|
T Consensus 358 ~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~-~-p~~IvYV 394 (432)
T COG2265 358 WEGYKPDVVVV-----DPPRAGADREVLKQLAKL-K-PKRIVYV 394 (432)
T ss_pred cccCCCCEEEE-----CCCCCCCCHHHHHHHHhc-C-CCcEEEE
Confidence 1 3799887 33322223 455555554 4 5555554
No 277
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.89 E-value=0.012 Score=45.47 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=40.4
Q ss_pred hcChhhhhh-hCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 32 ELRLADIMH-SHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 32 ~lglfd~L~-~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+|.+|- .+ +|.|+++||+.++. +...+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~-~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEEN-GPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhc-CCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 344555554 33 89999999999999 88999999999999999999874
No 278
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.099 Score=47.67 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEec-cCCC-CCCC--ccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGG-DMFD-AIPK--ADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~-d~~~-~~p~--~D~i~~~- 251 (350)
..++..|||==||||.++++..-- ++++++.|+ ..+++-++. -....+... |+.. |+++ +|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 567889999999999999887654 788999999 788887765 133444444 8888 7775 9999871
Q ss_pred -----chhccCC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 -----WILHDWD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 -----~vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
....-.. ++-..++|..+.++|+ +||++++.-
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~ 310 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAA 310 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEec
Confidence 1111111 2335688999999999 999988644
No 279
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.74 E-value=0.037 Score=42.64 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=52.2
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ +...+.+.++-|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 4445677778765 69999999999999 788999999999999999997522111012588888777544
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.73 E-value=0.035 Score=52.76 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hh----HhhhCCCCCCeEEEeccCCCCC---CC-ccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PH----VVATAPVCEGIFHVGGDMFDAI---PK-ADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~~---p~-~D~i~~~~vl 254 (350)
......|+|..+|.|.|+.+|... | +.+++. |. .+...-+ ..+-=+.+|.-+++ |. ||++...+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhh
Confidence 456789999999999999999763 3 444433 32 1111111 01111334555544 43 9999999999
Q ss_pred ccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 255 HDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
..+.+. +...+|-++-|+|+ |||.++|-|..- ..+++++++..-.|+..
T Consensus 438 s~~~~rC~~~~illEmDRILR-P~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILR-PGGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhcccccHHHHHHHhHhhcC-CCceEEEeccHH-----------------------------HHHHHHHHHHhCcceEE
Confidence 887544 56788999999999 999999854211 14666777777777755
Q ss_pred EEEEcCC---ceeEEEEee
Q 018775 334 KIISMPA---LYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~~~---~~~vi~~~~ 349 (350)
....-.+ ...++.|+|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 4444333 467888876
No 281
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.083 Score=45.54 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=73.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC----CcEEEecc-hhHhhhC-----CCCC--CeEEEeccCCCC---CCC--c-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH----IKGINFDL-PHVVATA-----PVCE--GIFHVGGDMFDA---IPK--A- 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~--~i~~~~~d~~~~---~p~--~- 245 (350)
..+...++|+|+|+..=+..|...+.. .+++-+|. ..+++.- ++.. .+.-+++|+..+ .|. -
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345889999999999888888877655 78898998 5554421 2233 344567888763 332 2
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
=.++....|-++++.++..+|.+++.+|+ ||-.+++-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEEe
Confidence 23456788999999999999999999999 99999883
No 282
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.64 E-value=0.059 Score=46.99 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=63.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC------------CCCeEEEeccCCCC------CCC-cc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------------CEGIFHVGGDMFDA------IPK-AD 246 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~i~~~~~d~~~~------~p~-~D 246 (350)
...+||++|+|+|..++..+. .....++.-|.+..++..+. ...+.+...+-..+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999966655554 45678888887665554331 23555555444331 234 89
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+|+.+.++++ +.....++.-++..|. .++.+++.-...
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~-~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLA-KDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHh-cCCeEEEEEecc
Confidence 9999999987 3334567777888888 777555443333
No 283
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.59 E-value=0.025 Score=41.85 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=49.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.+..+||+.+++ +...+.+.|+-|+..|+|.+.....+.....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 45566677654 58999999999999 788999999999999999987521111123577777665443
No 284
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.53 E-value=0.4 Score=41.50 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=66.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCC-----ccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPK-----ADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~-----~D~i~~~~vl 254 (350)
.+++||=|| -.=.++++++...+..+++++|+ +..++..++ .-.|+.+..|+.+++|+ ||+++.--
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 478999998 44455666776677789999999 666665543 44599999999998763 99999832
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH---HHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE---QEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~e~~~ll~~aGf~ 331 (350)
-+..+-..-++.+..++|+.+|+..++ -... +..|. -++++.+.+.||.
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~--------------------------~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYF-GFTH--------------------------KEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEE-EE-T--------------------------TT--HHHHHHHHHHHHTS--E
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEE-EEec--------------------------CcCcHHHHHHHHHHHHHCCcC
Confidence 122345678899999999944444332 1111 11122 3456777788888
Q ss_pred eeEEEE
Q 018775 332 RCKIIS 337 (350)
Q Consensus 332 ~~~~~~ 337 (350)
+..++|
T Consensus 173 i~dii~ 178 (243)
T PF01861_consen 173 ITDIIP 178 (243)
T ss_dssp EEEEEE
T ss_pred HHHHHh
Confidence 777766
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.51 E-value=0.037 Score=49.98 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=61.3
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~ 242 (350)
+..++++.+. ..++..++|.=+|.|..+..++++.|+.+++++|. +.+++.+++ .+|++++++++.+ . .
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 3456777776 56778999999999999999999988899999999 888887764 4589999988875 2 1
Q ss_pred -----CCccEEEe
Q 018775 243 -----PKADAVFM 250 (350)
Q Consensus 243 -----p~~D~i~~ 250 (350)
..+|.|++
T Consensus 86 ~~~~~~~vDgIl~ 98 (305)
T TIGR00006 86 DELLVTKIDGILV 98 (305)
T ss_pred HhcCCCcccEEEE
Confidence 23677766
No 286
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.50 E-value=0.022 Score=42.46 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL 218 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 218 (350)
.+...++|||||.|.+.--|.+. +.++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 46789999999999999888876 567888884
No 287
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=0.0052 Score=48.83 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=43.2
Q ss_pred eEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 231 IFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 231 i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+.+++....+ ++. +.|+|.+.+|+.|+.-++-...++.+++.|| |||+|-|.-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcC
Confidence 4444443333 443 3999999999999999999999999999999 9999988543
No 288
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.44 E-value=0.02 Score=46.21 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
++.|+++||++.|+ ++..|+++|..|...|+|+-..+ ++|.|+++....
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG----~~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG----KGGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC----CCCCccCCCChH
Confidence 38999999999999 89999999999999999998873 258898775443
No 289
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.15 Score=47.13 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCC---------------------------------------cEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHI---------------------------------------KGI 214 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 214 (350)
..++..-. +.+...++|==||+|.++++.+...+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 33444344 4566899999999999999987766532 267
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEec--chhccCChHHHH-----HHHHHHHhhCCCC
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMK--WILHDWDDEACV-----KILKNCRQAIPDK 276 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~--~vlh~~~~~~~~-----~~L~~~~~~L~~p 276 (350)
++|+ +.+++.|+. .+.|+|..+|+.. ..| .+|+|+++ +-.- +.++..+ .+.+.+++.++ -
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~-~ 336 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLA-G 336 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhc-C
Confidence 9998 888887764 6889999999997 444 69999985 2221 2233222 34455666666 5
Q ss_pred CceEEE
Q 018775 277 SGKLVL 282 (350)
Q Consensus 277 gG~lli 282 (350)
.++.++
T Consensus 337 ws~~v~ 342 (381)
T COG0116 337 WSRYVF 342 (381)
T ss_pred CceEEE
Confidence 556555
No 290
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.39 E-value=0.029 Score=44.83 Aligned_cols=50 Identities=8% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++.+||+.+++ ++..+.+.|+.|...|+|.+.. .+.|++|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHHH
Confidence 78999999999999 7899999999999999999765 47799999886443
No 291
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.37 E-value=0.025 Score=50.71 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=68.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCC------CCCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDA------IPKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~p~~D~i~~ 250 (350)
.+.+|||+=|=||.++...+.. ...+++.+|. ..+++.+++ ..+++++..|+++- ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999986664 2347899998 777776654 46899999999872 125999998
Q ss_pred ---cchhccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 251 ---KWILHDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 251 ---~~vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+.=..+. ..+-..+++++.++|+ |||.|+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~ 236 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLT 236 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 11111111 2345678999999999 9999875
No 292
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.044 Score=43.26 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKA 245 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~ 245 (350)
++++.+. .++..+.+|+|+|.|....+.++.. -...+++++ |..+...+- ..+..|...|+++ ++.+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444455 4566899999999999998877764 456788888 665554432 6788999999999 77765
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-++.+.+=.- ...+-.+++.-++ .|.+++---+-+
T Consensus 140 ~~vviFgaes~-----m~dLe~KL~~E~p-~nt~vvacRFPL 175 (199)
T KOG4058|consen 140 RNVVIFGAESV-----MPDLEDKLRTELP-ANTRVVACRFPL 175 (199)
T ss_pred ceEEEeehHHH-----HhhhHHHHHhhCc-CCCeEEEEecCC
Confidence 43333221111 1223446676777 777776544333
No 293
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.29 E-value=0.013 Score=39.34 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=38.7
Q ss_pred hcChhhhhhhCCCC--CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSP--ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++.++-.|... ++ +|+.|||+.+++ ++..+.+.++.|+..|+|++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34455566654 34 899999999999 8899999999999999999986
No 294
>PHA00738 putative HTH transcription regulator
Probab=95.26 E-value=0.026 Score=42.00 Aligned_cols=48 Identities=6% Similarity=0.221 Sum_probs=42.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|... +++++.+|++.+++ ....+.+.|+.|...|+|....
T Consensus 13 tRr~IL~lL~~~-e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK 60 (108)
T PHA00738 13 LRRKILELIAEN-YILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHHc-CCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 567788888763 47999999999999 8999999999999999999887
No 295
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.23 E-value=0.027 Score=44.66 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++.|.++||+.+++ ++..++++|..|...|++....+ ..|.|.++...
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G----~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG----PGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC----CCCCEeccCCH
Confidence 58999999999999 89999999999999999987542 14678866533
No 296
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=95.21 E-value=0.036 Score=44.90 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=41.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||++.++ ++..|+++|..|...|||.-..+ ..|+|+++...
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG----~~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRG----RNGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeeecCCH
Confidence 57899999999999 89999999999999999998873 25789876543
No 297
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.11 Score=43.12 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=62.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C----CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A----IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~----~p~~D~i~~~ 251 (350)
.+.++||+=+|+|.++++-+.+.. .+++.+|. ..++...++ ..++.++..|... . .++||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 589999999999999999888864 36777776 555544432 5788888888884 1 1239999983
Q ss_pred chhc-cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 252 WILH-DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 252 ~vlh-~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
-=.+ .+-+....-++-.-...|+ |+|.+++
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~ 152 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLK-PGALIVV 152 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcC-CCcEEEE
Confidence 3222 1112222222223557799 9887665
No 298
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.03 E-value=0.012 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=38.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.++..|.+. +++|..+||+.+++ +...+.++++.|+..|++++..
T Consensus 6 ~~iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 6 FRILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3444555554 68999999999999 8999999999999999999986
No 299
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.96 E-value=0.26 Score=46.86 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=71.9
Q ss_pred ceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhC-----CCCCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 188 QSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATA-----PVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a-----~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
.+++-+|||.-.++..+-+. |. .++-+|. +.+++.. +....+.+...|+.+ .++ +||+++....++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 49999999999998887775 34 3555566 4444433 235678888999998 665 49999999999985
Q ss_pred C-hH-------HHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 258 D-DE-------ACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 258 ~-~~-------~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
- ++ .+...+.++.++++ |||+.+.+-..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl~ 163 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTLV 163 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEee
Confidence 2 22 23456889999999 99999887773
No 300
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.81 E-value=0.072 Score=49.02 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=75.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc---hhHhhhCC-------------CCCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL---PHVVATAP-------------VCEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~~i~~~~~d~ 238 (350)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+|+.+ |.-+...+ +...++.+++++
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3445555 67889999999999999887776443333344433 33222211 156788999999
Q ss_pred CCC------CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 239 FDA------IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 239 ~~~------~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
..+ .+.+++|+.+++..+ + +..-=+.++..-++ +|-+++-.+...+.+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--p-~L~lr~~eil~~ck-~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--P-ELKLRSKEILQKCK-DGTRIISSKPLVPRP 314 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--H-HHHHhhHHHHhhCC-CcceEeccccccccc
Confidence 984 245999999998874 3 33333558888889 999999888887743
No 301
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.27 Score=45.78 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=72.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCC----C--CCCeEEEeccCCC-C--CC---CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAP----V--CEGIFHVGGDMFD-A--IP---KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~~i~~~~~d~~~-~--~p---~~D~i 248 (350)
..++.+|||..++.|.=+..+++..++ ..++.+|. +.-++..+ + ..++.++..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 677899999999999999999998766 45588887 54444332 2 3446777777654 1 22 28988
Q ss_pred Ee------cchh-------ccCChHH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FM------KWIL-------HDWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
++ ..++ ..+...+ -.++|+.+.+.|| |||+|+-....+..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccCCch
Confidence 87 2344 2233332 2378999999999 99999876655544
No 302
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.77 E-value=0.036 Score=43.60 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=39.7
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++.|.++||+.+++ ++..++++|+.|...|++....+. ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g~----~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRGP----GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccCC----CCCccCCCCH
Confidence 59999999999999 899999999999999999876311 3578766443
No 303
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=94.77 E-value=0.047 Score=37.61 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.++..|.+ ++.+.++||+.+|+ +...+++-++.|.+.|+..... +.+|++....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 456777876 68999999999999 8899999999999999965544 2566665433
No 304
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.76 E-value=0.25 Score=39.46 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=48.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34557777654 68999999999999 889999999999999999998521110011356666665443
No 305
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.72 E-value=0.058 Score=34.95 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHh
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRML 72 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 72 (350)
.-.+|.+|.+.|.||. + -..|.+|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4578999999999996 2 47899999999999 677777777654
No 306
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.68 E-value=0.047 Score=46.53 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=49.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc-CCCC-CCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS-SDGG-DETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~-~~~~~~~t~~s~~l~ 102 (350)
..|+..|... +++|..+||+.+++ ++..+++.|+.|...|+|.+... ...+ +...|++|+.+..+.
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 3466667554 68999999999999 88999999999999999998731 1111 122478887776444
No 307
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=94.68 E-value=0.053 Score=35.40 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCC
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKG 76 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g 76 (350)
.++..|..+.+++|.++||+.+++ +.+.+++-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 355566333367999999999999 8999999999999999
No 308
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.65 E-value=0.062 Score=48.52 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
+..++++.+. ..++..++|.=-|.|+.+..+++++|+.+++++|. |.+++.+++ .+|+.++..+|.+
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 4566777776 67788999999999999999999999999999999 888877654 5789998888764
No 309
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=94.59 E-value=0.06 Score=34.48 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=37.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++.|... ++.+..+|++.+++ +...+++.|..|...|++.+..
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 44555544 68999999999999 8899999999999999999876
No 310
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.58 E-value=0.065 Score=43.38 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++...+||+.+++ .+..+..+++-|...|++.... .+.+.+|+.+....
T Consensus 23 ~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a 72 (154)
T COG1321 23 GFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKA 72 (154)
T ss_pred CcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHH
Confidence 79999999999999 7788999999999999999987 58899998887554
No 311
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.51 E-value=0.042 Score=43.18 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=38.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
++.|+.|||+++++ ++..+.+.|+.|...|++....+. .+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g~----~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRGV----EGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCCC----CCChhhcC
Confidence 68999999999999 899999999999999999875311 35676543
No 312
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.51 E-value=0.043 Score=40.12 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=47.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
|+..|.. ++....||.+.+ ++ ++..|.+-|+.|+..|++.+.......+.-.|++|+.+..+.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455555 799999999999 88 889999999999999999997532111123599999887665
No 313
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.46 E-value=0.07 Score=43.22 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=47.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
|...+... ++.+..+||+.+++ +...+.++|+.|...|+|.+.. ...+.+|+.+..+.
T Consensus 42 I~~~l~~~-~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEV-GEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCceEECchHHHHH
Confidence 44555543 68999999999999 8899999999999999999875 35688887776443
No 314
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.43 E-value=0.099 Score=43.76 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=61.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCC-CC----------CC-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFD-AI----------PK- 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~----------p~- 244 (350)
+...|+-+|||-=....++....++++++-+|+|++++.-++ ..+.+++..|+.+ .. ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999998878899999999988775443 1235689999997 21 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNC 269 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~ 269 (350)
.-++++..++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4488889999999999999998876
No 315
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=94.40 E-value=0.14 Score=34.44 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 46 ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 46 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|..+||+.+++ +...+++.|..|...|++....
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 8899999999999999998775
No 316
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.38 E-value=0.081 Score=46.32 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=58.3
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
-.++...-+.+++-.|.+ ||.|.+||-..+++ +...+..=|+-|...|++.+++ +.|++|+.+..++
T Consensus 7 ~~if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~~-------~~Y~LS~~G~iiv 73 (260)
T COG4742 7 DLLFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQEG-------DRYSLSSLGKIIV 73 (260)
T ss_pred HHHHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEecC-------CEEEecchHHHHH
Confidence 345666778889999987 89999999999999 7788999999999999999996 8999998777555
No 317
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.32 E-value=0.38 Score=44.37 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=76.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHH--------C--------CCCcEEEecchh-----HhhhCCC-------CCC--eEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS--------Y--------PHIKGINFDLPH-----VVATAPV-------CEG--IFH 233 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~~-------~~~--i~~ 233 (350)
.++..+|+|+||.+|..+..+... + |.+++..-|+|. ....... ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 467889999999999988765441 1 235667777752 1111100 122 344
Q ss_pred EeccCCC-CCCC--ccEEEecchhccCC-------h------------------------------HHHHHHHHHHHhhC
Q 018775 234 VGGDMFD-AIPK--ADAVFMKWILHDWD-------D------------------------------EACVKILKNCRQAI 273 (350)
Q Consensus 234 ~~~d~~~-~~p~--~D~i~~~~vlh~~~-------~------------------------------~~~~~~L~~~~~~L 273 (350)
++|.|.. -+|+ .|++++++.||-++ + ++...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788888 4664 89999999998653 1 11223344333446
Q ss_pred CCCCceEEEEeeeecCCCCCcccc--c-----chhhhhhHhhhcCC---------cccCCHHHHHHHHHhcC-Cce
Q 018775 274 PDKSGKLVLVEIVVQEDGNNIFGD--M-----GLVFDLVMFAHTTG---------GKERTEQEWMKLLEQGG-FHR 332 (350)
Q Consensus 274 ~~pgG~lli~e~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~---------~~~~s~~e~~~ll~~aG-f~~ 332 (350)
+ |||++++.-...++........ . ..+.++.-.+.... -..++.+|+++.+++.| |++
T Consensus 174 v-~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 174 V-PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp E-EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred c-cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 8 9999999888777732221100 0 01222211111110 12358999999999987 444
No 318
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=94.27 E-value=0.066 Score=45.64 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=47.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++.++..|.+. ++.+..+||+.+++ ++..+.+.|+.|...|++.+.+.- ...|++|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~r----~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGRK----GKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcCC----ccEEEeCCC
Confidence 45667777664 58999999999999 888999999999999999998510 356887764
No 319
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=94.20 E-value=0.077 Score=42.36 Aligned_cols=61 Identities=8% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|+..+.++.+. . +.+.+.++||+.+|+ +...+++.|..|...|++...... +|+|.++.
T Consensus 9 YAl~~~i~la~~~---~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G~----~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASLP---E-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRGK----NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcCC---C-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecCC----CCCeeecC
Confidence 3455555555432 2 257899999999999 889999999999999999988632 46787664
No 320
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=94.18 E-value=0.054 Score=46.13 Aligned_cols=65 Identities=18% Similarity=0.374 Sum_probs=49.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecChhchhhh
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTHISKWLL 102 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~~s~~l~ 102 (350)
.|...|... +|+|+.|||+++|+ ++..+++.|+.|++.|+++..... +-| |.-.|++|..+....
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f 81 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQF 81 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhc
Confidence 345566654 79999999999999 889999999999999999987322 112 234688888766433
No 321
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=94.12 E-value=0.1 Score=34.41 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+++ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456 89999999999 8899999999999999998876
No 322
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=94.12 E-value=0.076 Score=40.85 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=47.5
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+-+=-.+.|++.+.+. +|.|+.|+|+.+|- +..++.|-|+.|+..|++..++
T Consensus 58 la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 58 LARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 3344445567888999886 79999999999999 8999999999999999999987
No 323
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.12 E-value=0.11 Score=43.14 Aligned_cols=45 Identities=7% Similarity=0.143 Sum_probs=40.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
..|+++|... +++|.++||+.+|+ +...+++.|..|...|++...
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEe
Confidence 4488888775 69999999999999 899999999999999999944
No 324
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.10 E-value=0.057 Score=36.74 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|-|-|+.|||+.+|+. ++..+.+.|++|+..|+|.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4577999999999994 5899999999999999999986
No 325
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.061 Score=51.17 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=45.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA 241 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~ 241 (350)
++.+..++|+-||||.++.++++.. .+++++++ |+.++.|+. -.+.+|++|-.++.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 7778999999999999999998864 46888887 888887765 46789999955553
No 326
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=94.03 E-value=0.52 Score=37.60 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++..|...+++.|..+||+.+++ ++..+.+.++.|+..|+|++.....+.-.-...+|+.+..+.
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 356666543346899999999999 889999999999999999998521110011356776666444
No 327
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.93 E-value=0.022 Score=42.77 Aligned_cols=87 Identities=13% Similarity=0.241 Sum_probs=44.4
Q ss_pred ccEEEecchh----ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 245 ADAVFMKWIL----HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 245 ~D~i~~~~vl----h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
||+|+|..|- =++.|+-...+++++++.|+ |||.+++=-.-... +........ .+..... .-...+++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lilEpQ~w~s-----Y~~~~~~~~-~~~~n~~-~i~lrP~~ 73 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILILEPQPWKS-----YKKAKRLSE-EIRENYK-SIKLRPDQ 73 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE---HHH-----HHTTTTS-H-HHHHHHH-H----GGG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEEeCCCcHH-----HHHHhhhhH-HHHhHHh-ceEEChHH
Confidence 8999886542 23578889999999999999 99998762111111 100000000 0101111 12234567
Q ss_pred HHHHHHh--cCCceeEEEEcC
Q 018775 321 WMKLLEQ--GGFHRCKIISMP 339 (350)
Q Consensus 321 ~~~ll~~--aGf~~~~~~~~~ 339 (350)
+.+.|.+ .||..++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8887877 699988765543
No 328
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.80 E-value=0.059 Score=50.11 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDM 238 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~ 238 (350)
...+++.++ ..+. +|||+=||+|.++..|++... ++++++. +++++.|+. -++++|+.++.
T Consensus 186 ~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344455555 3344 899999999999999998754 6888898 888887764 46789987654
No 329
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.73 E-value=0.098 Score=44.42 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.-++|.+.++..+++.|... +|+.+.|||+++|+ +..-+..-+..|+..|+++-+.
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeeee
Confidence 45788899999999999987 79999999999999 7888999999999999998653
No 330
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=93.35 E-value=0.087 Score=39.79 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..+||+.+|+ ++..+++.++.|...|++.+..
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeceE
Confidence 456778888775 68999999999999 8899999999999999999543
No 331
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=93.22 E-value=0.11 Score=34.75 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=33.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++++..+||+.+|+ .+..+...++-|...|++..+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 379999999999999 8899999999999999999885
No 332
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.21 E-value=1.2 Score=36.69 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=72.4
Q ss_pred ecCCchHHHHHHHHHCC---CCcEEEecc-hhHhhhCCC---------CCCeEEE-eccCCC---CC--C--CccEEEec
Q 018775 193 VGGGTGGALAEIVKSYP---HIKGINFDL-PHVVATAPV---------CEGIFHV-GGDMFD---AI--P--KADAVFMK 251 (350)
Q Consensus 193 vG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~i~~~-~~d~~~---~~--p--~~D~i~~~ 251 (350)
||=|.=.++..|++++. ++.+|.+|. .++.+.-.. ...+++. .-|..+ .. . .||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56677778888888877 455677776 444443331 2334433 345554 12 1 39999885
Q ss_pred chhccCC-------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 252 WILHDWD-------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 252 ~vlh~~~-------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+ -|. . .+-...+++.+.++|+ ++|.+.|.-... ..++.
T Consensus 83 F-PH~-G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~--------------------------~py~~ 133 (166)
T PF10354_consen 83 F-PHV-GGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDG--------------------------QPYDS 133 (166)
T ss_pred C-CCC-CCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC--------------------------CCCcc
Confidence 3 222 2 2234578889999999 999998743211 11222
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
=.+.++.+++||..++..+..
T Consensus 134 W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccHHHHHHhcCCEEEEEecCC
Confidence 234467788999999988864
No 333
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=93.19 E-value=0.15 Score=35.10 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=42.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
..++..+.. ++.+..||++.+++ +...+.+.|+.|.+.|++...... ....|++++
T Consensus 10 ~~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 10 LRILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 345666655 35999999999999 889999999999999999987521 124566664
No 334
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=92.93 E-value=0.2 Score=33.37 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=36.2
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 3 l~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 444543 69999999999999 7889999999999999999765
No 335
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=92.91 E-value=0.14 Score=39.26 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=40.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..|++.|...+++.|++||.+.+.- +..+...+.|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 34567777664478999999999831 1117789999999999999999975
No 336
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=92.85 E-value=0.17 Score=37.27 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 48 LPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 48 ~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.+||+.+++ +...+.+.|+.|...|+|.+.. +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 5689999999 8899999999999999999997 46788888776543
No 337
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.82 E-value=0.19 Score=38.09 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=46.6
Q ss_pred HhcChhhhhh--h-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhh
Q 018775 31 VELRLADIMH--S-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWL 101 (350)
Q Consensus 31 ~~lglfd~L~--~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l 101 (350)
.++.++..|. . .++++|..+||+.+++ +...+.+.++.|+..|+|.+..... +. .+.+|+.+..+
T Consensus 26 ~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~---D~R~~~i~lT~~G~~~ 96 (109)
T TIGR01889 26 EELLILYYLGKLENNEGKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSED---DERKVIISINKEQRSK 96 (109)
T ss_pred HHHHHHHHHHhhhccCCcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcc---cCCeEEEEECHHHHHH
Confidence 3444555554 1 1268999999999999 8899999999999999999875311 22 25566665533
No 338
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=92.81 E-value=0.42 Score=35.12 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh--hHhhhcCCcccC-------CHHHHHH
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL--VMFAHTTGGKER-------TEQEWMK 323 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------s~~e~~~ 323 (350)
+|-|++.++..++|+++....+ +++++.= .. . ..++.+ .....++ +..+ .++++.+
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~---~~~ifTf-AP-~---------T~~L~~m~~iG~lFP-~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR---GSLIFTF-AP-R---------TPLLALMHAIGKLFP-RPDRSPRIYPHREEDLRR 68 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc---CcEEEEE-CC-C---------CHHHHHHHHHhccCC-CCCCCCcEEEeCHHHHHH
Confidence 4557899999999999999866 6766521 11 1 112222 1222344 3333 6799999
Q ss_pred HHHhcCCceeEEEEcCCc--ee-EEEEe
Q 018775 324 LLEQGGFHRCKIISMPAL--YS-IIEAY 348 (350)
Q Consensus 324 ll~~aGf~~~~~~~~~~~--~~-vi~~~ 348 (350)
.++++||++.+...+... ++ ++|++
T Consensus 69 ~l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHHhCCCeeeecccccCcChHHHHhhcc
Confidence 999999999998777432 22 55554
No 339
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.74 E-value=0.86 Score=43.78 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=83.5
Q ss_pred hhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccC-CCCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hh
Q 018775 147 IWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG-FDSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PH 220 (350)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~ 220 (350)
-|+.+++|+-.-..|.++. ...+.+..+.+ .+....|+-+|+|-|-+..+..+. ...++.++++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3566677776544444443 34455554422 123678889999999887765552 34566777776 77
Q ss_pred HhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecchhccCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 221 VVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 221 ~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..+. .++|+++..|+.+ ..| .+|++++. .|--+.|++ ..+-|.-+.+.|+ |+|.-+=
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLk-pdgIsIP 476 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLK-PDGISIP 476 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcC-CCceEcc
Confidence 6655443 7899999999999 544 38988753 333444443 4467899999999 9976553
No 340
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.73 E-value=0.34 Score=41.01 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=54.3
Q ss_pred CcceEEEecCCchHHHHH---HHHHC-CCCcEEEecc--hhHhhhCCC----CCCeEEEeccCCCC-----C------CC
Q 018775 186 SIQSLADVGGGTGGALAE---IVKSY-PHIKGINFDL--PHVVATAPV----CEGIFHVGGDMFDA-----I------PK 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~----~~~i~~~~~d~~~~-----~------p~ 244 (350)
++..|+++|--.|.-+.. +++.+ ++.+++++|+ +..-..+.+ ..||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 368999999877766654 44555 7889999998 222223333 48999999998863 1 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
..+|+. ..=|. .+.+.+.|+.....++ ||+.++|-|....
T Consensus 112 ~vlVil-Ds~H~--~~hvl~eL~~y~plv~-~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVIL-DSSHT--HEHVLAELEAYAPLVS-PGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT---TT-EEEETSHHHH
T ss_pred ceEEEE-CCCcc--HHHHHHHHHHhCccCC-CCCEEEEEecccc
Confidence 334443 22232 2236678999999999 9999888665543
No 341
>PRK10742 putative methyltransferase; Provisional
Probab=92.67 E-value=0.22 Score=43.41 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHhcccCCCCcc--eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEec
Q 018775 175 ALVSHYKDGFDSIQ--SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGG 236 (350)
Q Consensus 175 ~~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~ 236 (350)
.+++... ++++. +|||.=+|.|..++.++.. +++++.++. |.+....+. ..|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3445554 55555 9999999999999999987 566888887 544332221 146777777
Q ss_pred cCCC---CCC-CccEEEe
Q 018775 237 DMFD---AIP-KADAVFM 250 (350)
Q Consensus 237 d~~~---~~p-~~D~i~~ 250 (350)
|..+ ..+ .||+|++
T Consensus 153 da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 153 SSLTALTDITPRPQVVYL 170 (250)
T ss_pred cHHHHHhhCCCCCcEEEE
Confidence 7665 122 3777765
No 342
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=92.60 E-value=0.21 Score=36.83 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
.++|..|||+.+|+ +...+.|.|+.|+..|+|.+.+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 88999999999999999998763 3566655
No 343
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.60 E-value=0.26 Score=44.32 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=40.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEec----cCCCCC--C--CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGG----DMFDAI--P--KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~----d~~~~~--p--~~D~i 248 (350)
...++||||+|....=--|..+..++++++.|+ +..++.|++ .++|+++.. +++... + .||..
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 367999999997755333333334899999999 888887764 578988754 344422 1 39999
Q ss_pred Eecchhcc
Q 018775 249 FMKWILHD 256 (350)
Q Consensus 249 ~~~~vlh~ 256 (350)
+|+-=+|.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99877775
No 344
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=92.53 E-value=0.24 Score=35.90 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=49.4
Q ss_pred HHHhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHH----------HHhhcCCce-eecccCCCCCCCeEecCh
Q 018775 29 SAVELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLM----------RMLVRKGIF-AVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 29 ~~~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~~~~~~~t~ 96 (350)
.=++-.++..|... +.+.++.|||+.+++ ++.++..-| +.|+.+|++ .+....+ ...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g---~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG---FKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC---eeEEEeCh
Confidence 44667788888765 478999999999999 788888777 569999999 3332110 24699998
Q ss_pred hchhh
Q 018775 97 ISKWL 101 (350)
Q Consensus 97 ~s~~l 101 (350)
.+..+
T Consensus 82 ~G~~~ 86 (90)
T PF07381_consen 82 KGKRI 86 (90)
T ss_pred hhhhH
Confidence 77643
No 345
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.50 E-value=0.26 Score=44.36 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----CCC-ccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA----IPK-ADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~p~-~D~i~~ 250 (350)
..++.+|||..++.|.=+..+++... ...++..|. +.-+...+. ...+.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 56788999999999999999999876 567888887 655444332 45677777776652 223 898887
Q ss_pred ------cchhccCCh-------HH-------HHHHHHHHHhhC----CCCCceEEEEeeee
Q 018775 251 ------KWILHDWDD-------EA-------CVKILKNCRQAI----PDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ------~~vlh~~~~-------~~-------~~~~L~~~~~~L----~~pgG~lli~e~~~ 287 (350)
..++..-++ ++ -.++|+++.+.+ + |||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEeccH
Confidence 222332221 11 137899999999 9 999998655443
No 346
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=92.43 E-value=0.11 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 889999999999999875
No 347
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=92.37 E-value=0.23 Score=40.97 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCHHHHHhhc--CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchh
Q 018775 46 ITLPQLASRI--DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKW 100 (350)
Q Consensus 46 ~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~ 100 (350)
.++++||+++ ++ +..-++.-|+.|..+|++++++ +|+|..|..+-.
T Consensus 40 ~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecceee
Confidence 3999999999 99 8899999999999999999998 679998876544
No 348
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.07 E-value=0.34 Score=43.06 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---C--CCCcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---A--IPKAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~--~p~~D 246 (350)
..+...||=||+|-|.+....+++ +.+ .+..+|+ ..+++.-++ ..+|.++-||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988886 444 4567777 555554332 6789999998775 2 33599
Q ss_pred EEEecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+.-.-=-..+.. --..+..-+.++|| |+|.++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEec
Confidence 99872210000000 01245667889999 999998865
No 349
>PRK06474 hypothetical protein; Provisional
Probab=92.05 E-value=0.2 Score=41.69 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCC--CCCCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSD--GGDETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~~~~t~~s~ 99 (350)
..+|.--.++.|++.|...+++.|+.+|++.+ ++ +...+.|.|+.|+..|+|.+..... ++....|+++...-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45666677888899887653359999999999 67 7788999999999999999865311 11123577776543
No 350
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.97 E-value=0.24 Score=34.65 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=38.3
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
=|.|... +-.++.+||..++. ++..++.+|..++++|-+++..
T Consensus 8 Rd~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 8 RDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 3556665 79999999999999 8999999999999999999885
No 351
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=91.96 E-value=0.28 Score=42.05 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
...+.+. ..+|..+||+.+++ +...+.+.|+.|...|++++.... ....+++|+.+..+.
T Consensus 13 lg~l~~~-~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll 72 (217)
T PRK14165 13 LGAVNNT-VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVL 72 (217)
T ss_pred HhccCCC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHH
Confidence 3345442 57899999999999 889999999999999999987521 135688888776444
No 352
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=91.89 E-value=0.28 Score=37.61 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=45.2
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|.+.+.++ |.+|+.+++..+|+ +-..++++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888876 79999999999999 8899999999999999999987
No 353
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.86 E-value=0.82 Score=41.93 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEecc---CCCCCCC-ccEEEecchhccC
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGD---MFDAIPK-ADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~p~-~D~i~~~~vlh~~ 257 (350)
..++.+|+=+|.| .|..+..++++.- .+++.+|. ++-.+.|++-..-.++... ..+..+. +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6778888888866 6788888999765 89999999 7777777763233333322 2222222 999887443 2
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..+....+.|+ +||+++++-...
T Consensus 240 ------~~~~~~l~~l~-~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALR-RGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHh-cCCEEEEECCCC
Confidence 34677888899 999999987663
No 354
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=91.69 E-value=0.22 Score=42.70 Aligned_cols=59 Identities=15% Similarity=0.378 Sum_probs=48.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~ 102 (350)
++-.|....+-+...|||+.+|+ .++.+...++-|...|++++.+ .+.|..|..+. ++.
T Consensus 15 IL~ei~~~qp~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~l~ 74 (260)
T COG1497 15 ILSEIAVRQPRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEWLL 74 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC------CeeEEEehhHHHHHH
Confidence 33444333267899999999999 8899999999999999999987 57999999886 443
No 355
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.67 E-value=0.7 Score=39.56 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC---------CcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH---------IKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p-- 243 (350)
+.+..|++|+....|..+..|.++.-. -.++.+|+..|.- -+.|.-+++|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 567889999999999999988886411 1277788755433 24566778888873 12
Q ss_pred CccEEEec-----chhccCChH----HHHHHHHHHHhhCCCCCceEE
Q 018775 244 KADAVFMK-----WILHDWDDE----ACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 244 ~~D~i~~~-----~vlh~~~~~----~~~~~L~~~~~~L~~pgG~ll 281 (350)
.+|+|+|- --+|+++.- -....|.-...+|+ |||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeee
Confidence 38999993 457776532 23344555667899 999986
No 356
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=91.65 E-value=0.11 Score=37.90 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++.+--|+-.+++ +-.....+++.|+..|++...+.. ....|.+|+.+.-+.
T Consensus 30 ~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~fl 82 (95)
T COG3432 30 GGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHHH
Confidence 78999999999999 889999999999999977666520 012699999987554
No 357
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.56 E-value=0.86 Score=42.74 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=63.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHH----HHHHC---CCCcEEEecchh-----HhhhCC--------C-CCCeE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAE----IVKSY---PHIKGINFDLPH-----VVATAP--------V-CEGIF 232 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~----l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~~i~ 232 (350)
..|++.+. -....+|+|+|.|.|.-=.. |+.+- |.+++|+++.|. .++... . .-..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45677776 56788999999999954433 44432 677889998732 122111 1 22344
Q ss_pred EEec--cCCCCC--------C-CccEEEecchhccCChH------HHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 233 HVGG--DMFDAI--------P-KADAVFMKWILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 233 ~~~~--d~~~~~--------p-~~D~i~~~~vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
|... +-.++. + ++=+|-+...||++.++ ....+|+.++ .|+ |. .++++|...+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~-P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLN-PK-VVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcC-CC-EEEEEeecCCC
Confidence 4432 211111 1 13344466778988632 2445777666 567 76 55666665544
No 358
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.54 E-value=0.52 Score=42.12 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=57.0
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC-----CCCeEEEeccCCC
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
.+....++.+. ..+....+|.-=|.|..+..+++++|... .+++|. |.+++.+++ .+|+++++.+|..
T Consensus 10 VLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 10 VLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred hHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 34566777777 67789999999999999999999998665 999999 999998875 5699999987765
No 359
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=91.50 E-value=0.22 Score=40.57 Aligned_cols=46 Identities=7% Similarity=0.035 Sum_probs=39.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..|+++|... +++|-++||+.+|+ +..-++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4577877754 69999999999999 8899999999999999996543
No 360
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=91.45 E-value=0.16 Score=44.78 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=43.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+.+.|.++||-++-+||.+++|+ ++..+.|.|+-|+..|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 35677888877778999999999999 88999999999999999999873
No 361
>PHA02943 hypothetical protein; Provisional
Probab=91.26 E-value=0.32 Score=38.56 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=38.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.|.. |+.|..|||+++|+ +...++-.|..|+..|.+.+..
T Consensus 15 eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 45667743 78999999999999 8889999999999999999986
No 362
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.92 E-value=0.11 Score=43.93 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=43.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD 240 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~ 240 (350)
....|+|.-||.|+-++.++.++|. ++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999998875 556666 666665553 6799999999997
No 363
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=90.91 E-value=0.39 Score=42.18 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=49.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
.|..++-.|-.. |+.|+.|||+.+|+ +...+..+|+.|...|+++..++. +..|+.-+-...+
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g~----P~~y~av~p~~~i 79 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEGR----PKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCCC----CceEEeCCHHHHH
Confidence 445556666554 79999999999999 889999999999999999998532 5778876555433
No 364
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.78 E-value=1.3 Score=38.27 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-----hhHhhhCCCCCCeEEEeccCCCCCC------CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-----PHVVATAPVCEGIFHVGGDMFDAIP------KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~p------~~D~i~~~ 251 (350)
++++.+||-+|+++|....++..- .|+--+..++. .+.+..|++..+|--+.-|...|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 578999999999999998877653 45555555554 2455666665556666677777643 2677665
Q ss_pred chhccCChH-HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.+.+ ++.-+.-++...|+ +||.++|.=
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk-~gGhfvisi 261 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLK-NGGHFVISI 261 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhc-cCCeEEEEE
Confidence 44433 34445558999999 999998854
No 365
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.67 E-value=0.31 Score=38.58 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=64.5
Q ss_pred cEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC--CccEEEecchhccCC---------hHHHHHHHHHH
Q 018775 212 KGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP--KADAVFMKWILHDWD---------DEACVKILKNC 269 (350)
Q Consensus 212 ~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~---------~~~~~~~L~~~ 269 (350)
++.++|+ +++++..++ .+|++++..+-.. -.+ +.|+++++. -++| .+.....|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678999 788776654 4689998765554 233 488887742 2232 33456789999
Q ss_pred HhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 270 RQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 270 ~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.|+ |||.+.|+-..-.+.+.. ......+|.+-|.+.-|.+.+...+
T Consensus 79 l~lL~-~gG~i~iv~Y~GH~gG~e--------------------E~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLK-PGGIITIVVYPGHPGGKE--------------------ESEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEE-EEEEEEEEE--STCHHHH--------------------HHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhc-cCCEEEEEEeCCCCCCHH--------------------HHHHHHHHHHhCCcceEEEEEEEcc
Confidence 99999 999999866544332110 0112466666667778888888776
No 366
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.53 E-value=0.4 Score=44.89 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=52.7
Q ss_pred CCCeEEEeccCCC---CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 228 CEGIFHVGGDMFD---AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 228 ~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.++|+++.+++.+ ..| ++|.+++...+..+++++..+.++++.+.++ |||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCCC
Confidence 5899999998887 233 4999999999999999999999999999999 99999986655544
No 367
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=90.32 E-value=0.36 Score=33.67 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHhcChh-----hhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 26 ALKSAVELRLA-----DIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 26 ~l~~~~~lglf-----d~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++..+-+.|.. ..+. -++|.++||..+|+ +...+.+.|+.|...|++...+ +.+...
T Consensus 7 Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~-------~~i~I~ 68 (76)
T PF13545_consen 7 LLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR-------GKIIIL 68 (76)
T ss_dssp HHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET-------TEEEES
T ss_pred HHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC-------CEEEEC
Confidence 44555555553 1233 58999999999999 8899999999999999999886 566554
No 368
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=90.24 E-value=0.43 Score=33.46 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=39.2
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec-ccCCCCCCCeEecChhc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH-QSSDGGDETLYKMTHIS 98 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~-~~~~~~~~~~~~~t~~s 98 (350)
+.|+...+||+.+++ ++.-++.-+..|.++|+|+.. ++ .+.|.-|..+
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHH
Confidence 379999999999999 789999999999999999864 32 3566666544
No 369
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.09 E-value=0.54 Score=39.02 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=48.0
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++-.|... ++++|..+||+.+++ +...+.++++-|+..|+|++.....+.-.-..++|+.+..+.
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4455556432 257899999999999 889999999999999999998632110012466777776554
No 370
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=89.92 E-value=1.3 Score=34.26 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+....++.+.+-|...+|....+ |+.-..||.+.++ + ++.-|.+-|+.|+..|++.+..-....
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~P 76 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEP 76 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCC
Confidence 356777777778777777765432 5889999999998 8 889999999999999999998632111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
+.-.|++|+.+.-+.
T Consensus 77 prveY~LT~~G~~L~ 91 (120)
T COG1733 77 PRVEYRLTEKGRDLL 91 (120)
T ss_pred ceeEEEEhhhHHHHH
Confidence 134688888776554
No 371
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=89.87 E-value=0.43 Score=37.11 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCce
Q 018775 263 VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALY 342 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~ 342 (350)
..+++++++.++ |||++.-. + +...+++.|.++||.+.++...++-.
T Consensus 70 ~e~~~~l~~~~~-~~~~l~Ty--------------------------s------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSK-PGGTLATY--------------------------S------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEE-EEEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhC-CCcEEEEe--------------------------e------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 368999999999 99887620 1 12457788999999988877777777
Q ss_pred eEEEEee
Q 018775 343 SIIEAYP 349 (350)
Q Consensus 343 ~vi~~~~ 349 (350)
.++.|.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 8888776
No 372
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=89.83 E-value=0.65 Score=38.82 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ +...+.++++-|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4566777665 68999999999999 778899999999999999987421110011356777666444
No 373
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=89.82 E-value=0.44 Score=34.77 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=41.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.|+..|... +|=.+.-||..+++ +...++..|+.|..+|+|++.+
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 45667777765 68899999999999 8999999999999999999997
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.79 E-value=0.54 Score=47.77 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-------C-----CCcEEEecc-h---hHhhhCC----------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-------P-----HIKGINFDL-P---HVVATAP---------------------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------- 226 (350)
+..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999998766655433 3 357777774 3 1111110
Q ss_pred C-------CC--CeEEEeccCCCC---CC-CccEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 227 V-------CE--GIFHVGGDMFDA---IP-KADAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 227 ~-------~~--~i~~~~~d~~~~---~p-~~D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
. .. ++++..||+.+- +. .+|++++- +.-..-|+--...+++++++.++ |||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEE
Confidence 0 12 344566887762 22 38998873 33322233334578999999999 999887
No 375
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=89.54 E-value=0.37 Score=46.97 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=52.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
.+..++..|... +++|..+||+.+++ +...+.+.++.|.+.|++.+.... ...|.+|+.++.+..
T Consensus 7 ~e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~~----~~~i~LTeeG~~~~~ 71 (489)
T PRK04172 7 NEKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEERV----EEVYVLTEEGKKYAE 71 (489)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEeee----EEEEEECHHHHHHHH
Confidence 445566677654 68999999999999 889999999999999999987521 246999999984443
No 376
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=89.29 E-value=0.47 Score=41.88 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+.+.|.+. +.++++|||+.+|+ ++.-++|-|+.|.+.|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 3467778775 79999999999999 8899999999999999999986
No 377
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=89.14 E-value=0.46 Score=38.43 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=42.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..|++.|..+ +..|..+||+.+|+ ++..+.+=++.|...|++....
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeEE
Confidence 567888999886 79999999999999 8899999999999999998653
No 378
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=89.12 E-value=1.2 Score=39.94 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=71.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C----CCCccEEEecchhccCCh---
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A----IPKADAVFMKWILHDWDD--- 259 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~----~p~~D~i~~~~vlh~~~~--- 259 (350)
+++|+-||.|.+...+.+..- -.+..+|. +.+++..+....-.+..+|+.+ . .+++|+++...-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 689999999999988887642 13466787 6666655431111256677776 2 345999998654443321
Q ss_pred -----HHHHHHHHHHH---hhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 260 -----EACVKILKNCR---QAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 260 -----~~~~~~L~~~~---~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+....++.++. +.++ | +++++|.+..-.. . .......+|.+.|++.||.
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~-P--~~~v~ENV~g~~~------------------~--~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKK-P--KYFLLENVKGLLT------------------H--DNGNTLKVILNTLEELGYN 137 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcC-C--CEEEEEcCcchhc------------------c--CchHHHHHHHHHHHhCCcE
Confidence 11122333333 3334 4 5666675542211 0 1122467888999999998
Q ss_pred eeEE
Q 018775 332 RCKI 335 (350)
Q Consensus 332 ~~~~ 335 (350)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6443
No 379
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=89.07 E-value=0.46 Score=38.95 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
-.+..|+..|.++ +.+|..+||+++|+ ++..+.+=++.|...|++...
T Consensus 14 ~~D~~IL~~Lq~d-~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 14 RIDRNILNELQKD-GRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3678889999876 79999999999999 889999999999999999864
No 380
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.96 E-value=3.6 Score=38.72 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEe---cc-CCC---CC---CCccEEEec
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVG---GD-MFD---AI---PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d-~~~---~~---p~~D~i~~~ 251 (350)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++...+.++. .+ +.+ .. ..+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999997 889999999875435777776 66666665421122221 11 111 11 137887663
Q ss_pred c---------------hhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 252 W---------------ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 252 ~---------------vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
- +|+-.++. ...++++.+.++ |+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVR-KGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhc-cCCEEEEEcC
Confidence 2 11111222 356889999999 9999998754
No 381
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=88.87 E-value=0.69 Score=35.28 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=50.5
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
-+..++.++..|... ++.+..+||+.+++ +...+.++++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 20 lt~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 344566677777764 35544999999999 889999999999999999998632110012467777666444
No 382
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=88.67 E-value=0.54 Score=39.78 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=36.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.+...+.+.|.+|+|+.+|+ +.--.||.|.+|++.|+++.+-
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEEe
Confidence 33444422279999999999999 8889999999999999999764
No 383
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=88.65 E-value=0.45 Score=42.03 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=41.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+.+.|.+. +.+++.|||+.+++ ++.-++|-|..|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 7 HDAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34567778775 68999999999999 8899999999999999999986
No 384
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=88.54 E-value=1.1 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+|+ +..-+++-|+.|.+.|++....
T Consensus 22 ~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 577 99999999999 8899999999999999999886
No 385
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=88.41 E-value=0.52 Score=45.24 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred HHhcChhhhhhhCCCC-CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCC
Q 018775 30 AVELRLADIMHSHGSP-ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSE 106 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~ 106 (350)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.+. ++..+.|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4567778888764 44 799999999999 889999999999999999877532 46899999998 6666655
No 386
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.07 E-value=2.6 Score=41.19 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccC--------------CCC-------
Q 018775 185 DSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDM--------------FDA------- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~--------------~~~------- 241 (350)
.++.+|+=+||| .|..++..++... .+++++|. ++..+.++.. ..++..-|. .++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 468999999999 5667777777764 58999998 8877777651 112111111 001
Q ss_pred -----CCCccEEEecchhccCChHHHHHH-HHHHHhhCCCCCceEEEEee
Q 018775 242 -----IPKADAVFMKWILHDWDDEACVKI-LKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 -----~p~~D~i~~~~vlh~~~~~~~~~~-L~~~~~~L~~pgG~lli~e~ 285 (350)
...+|+++..--. +......+ .+++.+.++ |||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mk-pGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMK-PGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence 1348999875432 22112234 599999999 9999887643
No 387
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=88.05 E-value=0.58 Score=37.66 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=43.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|..+ ++.|..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 466788888876 79999999999999 8899999999999999999886
No 388
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.74 E-value=1.1 Score=39.41 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhcCCCCChHHHH----HHhcC-chh
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMI----LVENN-QWL 121 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~----~~~~~-~~~ 121 (350)
+.-.|+....+ +-+.+..+++.|...|++..++ +...+|+.+..++..- .+...- ..+.. ...
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi~ 103 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGIS 103 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-------CcEeehhhhHHHHHHh--CCCccccccccCcCCcccc
Confidence 78888888888 8899999999999999999997 5589999998776422 111100 00000 000
Q ss_pred hhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhh--HHHHHHhcccCCCCcceEEEecCCchH
Q 018775 122 LEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIV--MKALVSHYKDGFDSIQSLADVGGGTGG 199 (350)
Q Consensus 122 ~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~ 199 (350)
...+..|-+.++. +....|.....|.+....-.... +.-+-+.- --.+..|+-+| ---.
T Consensus 104 l~~f~dll~kf~e---------------iaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RG---DL~gK~I~vvG-DDDL 164 (354)
T COG1568 104 LQAFKDLLEKFRE---------------IAKDRPEPLHQYDQGFVTPETTVSRVALMYSRG---DLEGKEIFVVG-DDDL 164 (354)
T ss_pred chhHHHHHHHHHH---------------HHhcCCCcchhcccccccccceeeeeeeecccc---CcCCCeEEEEc-Cchh
Confidence 0012222221111 11111111111111110000000 00000011 12467899898 5555
Q ss_pred HHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCCC-----ccEEEecchhccCChHHHHHHHH
Q 018775 200 ALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIPK-----ADAVFMKWILHDWDDEACVKILK 267 (350)
Q Consensus 200 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p~-----~D~i~~~~vlh~~~~~~~~~~L~ 267 (350)
++++++-..---++.++|+ +..++...+ .++++.+..|..+|+|+ ||+++.--.= .-+....+|.
T Consensus 165 tsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~Flg 241 (354)
T COG1568 165 TSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLG 241 (354)
T ss_pred hHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHh
Confidence 6666554432336778888 544443322 56799999999999883 9999862100 0122445666
Q ss_pred HHHhhCCCCC--ceEEE
Q 018775 268 NCRQAIPDKS--GKLVL 282 (350)
Q Consensus 268 ~~~~~L~~pg--G~lli 282 (350)
+=...|+++| |.+.+
T Consensus 242 RGI~tLkg~~~aGyfgi 258 (354)
T COG1568 242 RGIATLKGEGCAGYFGI 258 (354)
T ss_pred ccHHHhcCCCccceEee
Confidence 6677787333 44443
No 389
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=87.71 E-value=0.22 Score=34.54 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=35.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhc---CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRI---DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~---~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|...+. +.+++.++|+.+ +... ..+++..+++.|++.|++++..
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 3444444 689999999999 7611 4589999999999999999975
No 390
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=87.44 E-value=0.94 Score=35.74 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
|++|.+|||...|+ ..+.+-.-|-++++.|-|.+..-
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q 41 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ 41 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC
Confidence 79999999999999 88999999999999999999863
No 391
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=87.39 E-value=0.79 Score=43.65 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|...
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~ 351 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLA 351 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEec
Confidence 379999999999999 8899999999999999999765 4667644
No 392
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=87.22 E-value=0.97 Score=40.26 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+..++++||++++ + +..-++.-|+.|..+|++++++ +|.|..|..+-
T Consensus 136 ~~~~~~~ia~~l~p~i---s~~ev~~sL~~L~~~glikk~~------~g~y~~t~~~l 184 (271)
T TIGR02147 136 FADDPEELAKRCFPKI---SAEQVKESLDLLERLGLIKKNE------DGFYKQTDKAV 184 (271)
T ss_pred CCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCeeECC------CCcEEeeccee
Confidence 3448999999998 6 7888999999999999999998 68898887653
No 393
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.13 E-value=0.68 Score=43.41 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CCC--ccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IPK--ADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p~--~D~i~~~~ 252 (350)
.+...|||||.|||.++.-.+++..+ .++.++. -.|.+.|++ +++|+++..--.+ . .|. +|+++..-
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 35678999999999999888888755 4777776 677776654 6788887654443 2 222 77666544
Q ss_pred hhccCChHHHHHHHHHHHhhCC
Q 018775 253 ILHDWDDEACVKILKNCRQAIP 274 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~ 274 (350)
+.-.+--+-+..-++++.+.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 4333322323345666666553
No 394
>PF13730 HTH_36: Helix-turn-helix domain
Probab=86.92 E-value=0.59 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
|.+.||+.+|+ +.+.+.+.++.|+..|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 889999999999999986
No 395
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=86.64 E-value=0.88 Score=38.51 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCC-cccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPD-IPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~-~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-+.|..|||+.+|+ + ...+.+.|+.|...|++.++.
T Consensus 24 ~~~~~~ela~~~~~---~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGL---RSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCC---CChHHHHHHHHHHHHCCCEecCC
Confidence 56889999999999 6 889999999999999999986
No 396
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=86.63 E-value=1.1 Score=30.79 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=38.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+...|+. +..|.+||-+.+|+ +...+-..|..|...|++.+.-
T Consensus 9 ~IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 9 KILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 35556666 69999999999999 8899999999999999999874
No 397
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=86.53 E-value=0.72 Score=32.32 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.+..+. .+++..+|++.+|. +++.+-..++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 4455667776533 78899999999999 9999999999999999999986
No 398
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=86.51 E-value=0.8 Score=40.85 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=42.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+.+.|... +.+++.|||+.+++ ++.-++|=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 45577888775 68999999999999 8899999999999999999987
No 399
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=86.37 E-value=0.91 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=55.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCC
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSE 106 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~ 106 (350)
..+..|+..|....+..+.++||+.+|+ +...+.+.+..|.+.|+++.+... ...|.+|+.+. ++..+.|
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK----SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 3455667777652257899999999999 889999999999999999887632 46899999998 6666555
No 400
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.32 E-value=0.72 Score=40.84 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=53.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------CCCeEEEec---cCCC-CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------CEGIFHVGG---DMFD-AIP 243 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~---d~~~-~~p 243 (350)
-.+.+|||+|||+|-..+....... ..+...|. .++++...- ..-...... |-.- -..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 4578999999999999888777642 55666665 444432211 111111112 1111 112
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.||+|.++-+++..+...... +-.....++ ++|.+++
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~-~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLY-LLHRPCLLK-TDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhH-hhhhhhcCC-ccchhhh
Confidence 489999888888755443322 333444556 7776654
No 401
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=86.04 E-value=0.74 Score=40.77 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=41.8
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.+.|.+. +.+++.|||+.+++ ++.-+||=|+.|+..|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 34567888875 69999999999999 8899999999999999999986
No 402
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=85.98 E-value=0.99 Score=37.01 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
-+|..+||+.+|+ +.+.+.|.+..|...+++.+.. .|.|.++|.-.
T Consensus 75 ~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~------~G~Y~iNP~~~ 120 (165)
T PF05732_consen 75 VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR------NGAYMINPNFF 120 (165)
T ss_pred EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc------CCeEEECcHHh
Confidence 3589999999999 7899999999999999999987 58899887543
No 403
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.90 E-value=1 Score=39.86 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCc
Q 018775 200 ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 200 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG 278 (350)
++.+|.++.++.+++++|. +..++.+.+..-+.-...+ .+....+|+|+++ .|......+++++...++ +|.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~-~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLK-PGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS--TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcC-CCc
Confidence 3567888888999999998 7777777543333322222 2234458999874 456667888999999888 876
Q ss_pred eEE
Q 018775 279 KLV 281 (350)
Q Consensus 279 ~ll 281 (350)
.+.
T Consensus 74 iv~ 76 (258)
T PF02153_consen 74 IVT 76 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 404
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=85.79 E-value=1.2 Score=38.93 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=39.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+.|.+. +.++.+|||+.+++ ++.-++|-|..|...|.+.+..
T Consensus 8 ~Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 8 AIVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 466777665 79999999999999 8899999999999999998865
No 405
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.79 E-value=3 Score=38.71 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=66.0
Q ss_pred cceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEecc-CC----C-CCC-CccEEEecchh
Q 018775 187 IQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGD-MF----D-AIP-KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d-~~----~-~~p-~~D~i~~~~vl 254 (350)
..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++ .+.+.....+ .. + .-. .+|+++=.--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999 6788888888888889999998 888888865 1222222221 10 1 112 4898876443
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
....+..+.++++ |||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r-~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALR-PGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhc-CCCEEEEEeccCCc
Confidence 1246889999999 99999998776655
No 406
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=85.10 E-value=1 Score=39.86 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=41.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-.+++.|.+. |.++++|||+.+++ ++.-+||=|+.|+..|++.+..
T Consensus 8 ~~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 8 QKILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 3467788776 79999999999999 8999999999999999999986
No 407
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=84.80 E-value=0.5 Score=35.49 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=33.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|++.|... +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 17 ~Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 17 RILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 357777654 68999999999999 8899999999999999997654
No 408
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.55 E-value=2.1 Score=37.67 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=25.7
Q ss_pred cceEEEecCCchHHHHHHHHHCC--------CCcEEEecc-hhH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYP--------HIKGINFDL-PHV 221 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 221 (350)
..+|+|+|+|.|.++..+++... .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 58999999999999999888543 357888887 443
No 409
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=84.30 E-value=1.3 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++|++|||+.+.+ ++++++.+|+.|.+.|.|.-..
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 8899999999999999999986
No 410
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=83.88 E-value=0.92 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=24.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
++..|.. |.|+|.++||..+|+ +.+.++..|..+-
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence 6777877 589999999999999 7777777777664
No 411
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.84 E-value=2.6 Score=38.78 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=40.0
Q ss_pred cchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC----C----CCcEEEecc-hhHhh
Q 018775 155 PQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY----P----HIKGINFDL-PHVVA 223 (350)
Q Consensus 155 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 223 (350)
|+....|...++.+.. ...+.+. .+....++++|+|.|.++..+++.. | .+++.+++. ++..+
T Consensus 52 pels~lFGella~~~~----~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 52 PELSQLFGELLAEQFL----QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred hhHHHHHHHHHHHHHH----HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 4555556655544321 2222333 4557899999999999998888743 3 567888887 54433
No 412
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=83.79 E-value=1.4 Score=40.29 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc-eeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI-FAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~t~~s 98 (350)
..+++.|.+. .+.+.++||+.+|+ +...+.+.++.|...|+ +.... +..|++.+..
T Consensus 7 ~~il~~L~~~-~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~------~~Gy~L~~~~ 63 (319)
T PRK11886 7 LQLLSLLADG-DFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK------GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec------CCeEEecCcc
Confidence 4566677653 68999999999999 88999999999999999 54443 3468765543
No 413
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=83.59 E-value=0.78 Score=35.31 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=41.9
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+.-|++.|.+.+++.|++||.+.+.- +..+..-+.|.|+.|...|++.+...
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~ 63 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEF 63 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEc
Confidence 44566778888765579999999998842 11155679999999999999999864
No 414
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=83.58 E-value=0.86 Score=33.98 Aligned_cols=48 Identities=6% Similarity=0.198 Sum_probs=37.3
Q ss_pred HhcChhhhhhh---CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 31 VELRLADIMHS---HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 31 ~~lglfd~L~~---~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+.-.||+.|.. ...++++++|++++++ ++..++..|+.|...|++--.
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 34455555544 1268999999999999 899999999999999998765
No 415
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=83.47 E-value=0.51 Score=32.17 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=42.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+-.|++.|... ++.++-.+|...|++- +..-+.+.|..|...|.|.+++.+ +-.|++++
T Consensus 5 ~ee~Il~~L~~~-g~~~a~~ia~~~~L~~-~kk~VN~~LY~L~k~g~v~k~~~~----PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKEL-GGSTATAIAKALGLSV-PKKEVNRVLYRLEKQGKVCKEGGT----PPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHH-TSSEEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEECSS----STEEEE-H
T ss_pred HHHHHHHHHHhc-CCccHHHHHHHhCcch-hHHHHHHHHHHHHHCCCEeeCCCC----CCceEecc
Confidence 455677777765 3666666766666510 478899999999999999998643 56787764
No 416
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=83.45 E-value=6.4 Score=33.59 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCC--cEEEecc-hhHhhhCCC---------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHI--KGINFDL-PHVVATAPV--------------------------------- 227 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~--------------------------------- 227 (350)
-.++.++-|=.||.|.++.-+.--+++. .+.+.|+ +++++.|++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3568899999999999987766555442 4677787 777765532
Q ss_pred ---------------CCCeEEEeccCCCCC-------C-CccEEEec---chhccCC----hHHHHHHHHHHHhhCCCCC
Q 018775 228 ---------------CEGIFHVGGDMFDAI-------P-KADAVFMK---WILHDWD----DEACVKILKNCRQAIPDKS 277 (350)
Q Consensus 228 ---------------~~~i~~~~~d~~~~~-------p-~~D~i~~~---~vlh~~~----~~~~~~~L~~~~~~L~~pg 277 (350)
.....+.+.|++++. + ..|+|+.- .-+-+|. ..-...+|..++.+|. ++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp-~~ 207 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLP-ER 207 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCC-CC
Confidence 123667788999832 1 26888762 3344464 3457799999999998 88
Q ss_pred ceEEEEe
Q 018775 278 GKLVLVE 284 (350)
Q Consensus 278 G~lli~e 284 (350)
+.+.|.+
T Consensus 208 sVV~v~~ 214 (246)
T PF11599_consen 208 SVVAVSD 214 (246)
T ss_dssp -EEEEEE
T ss_pred cEEEEec
Confidence 8877744
No 417
>PRK05638 threonine synthase; Validated
Probab=83.39 E-value=1.6 Score=42.09 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=47.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.|+..|.+ ++++..||++.++ + +...+++.|+.|...|+|+..... +..-.|++|+.+..+
T Consensus 373 r~~IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~~--g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 373 KLEILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYRK--GRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeecC--CCcEEEEECcHHHHH
Confidence 3556777776 6899999999998 6 778999999999999999864111 112358899877633
No 418
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=83.27 E-value=1.9 Score=37.02 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHh
Q 018775 22 ADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRML 72 (350)
Q Consensus 22 ~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 72 (350)
..-.+|+.|.+.|-||. + ..++.++||+.+|+ .+..+...||..
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGI---Skst~~ehLRrA 202 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGI---SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 35579999999999997 3 57899999999999 666666666644
No 419
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=82.67 E-value=2.3 Score=34.97 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...++++|+++|.+.+.- +..+..-++|.|+.|+..|+|.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 45667778888665579999999988842 1226678999999999999999986
No 420
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.47 E-value=8.2 Score=35.09 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-C-CCeEEEec-----cCCC----CCC--CccEE
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-C-EGIFHVGG-----DMFD----AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~i~~~~~-----d~~~----~~p--~~D~i 248 (350)
.+.+.+||=+|+| +|..+...++.+-..++++.|+ ++-++.|++ . .-+..... ++.+ ... .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 6678999999999 7888888889998889999999 888888886 1 11111111 1111 011 27887
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+-...++ ..++.+..+++ +||+++++.+-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r-~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATR-SGGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhc-cCCEEEEeccCCCc
Confidence 7766554 34667788899 99998887755544
No 421
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.38 E-value=6.9 Score=35.09 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=55.7
Q ss_pred ceEEEecCC--chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEe-ccC-CCCCCCccEEEecchhccCChHHH
Q 018775 188 QSLADVGGG--TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVG-GDM-FDAIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 188 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~-~~~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
.+|+=+|.| -|.++..+.++.+...+++.|. ....+.+...+ +.... .+. ......+|+|+++ .|....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 456667766 4566677777777778889887 55666655321 22221 222 2244458999874 456667
Q ss_pred HHHHHHHHhhCCCCCceE
Q 018775 263 VKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~l 280 (350)
..+++++...|+ ||..+
T Consensus 78 ~~~l~~l~~~l~-~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLK-KGAIV 94 (279)
T ss_pred HHHHHHhcccCC-CCCEE
Confidence 889999999898 87544
No 422
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.35 E-value=3.1 Score=39.53 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=58.0
Q ss_pred cceEEEecCCchHHHHHHHH--HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC---CccEEEe
Q 018775 187 IQSLADVGGGTGGALAEIVK--SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP---KADAVFM 250 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p---~~D~i~~ 250 (350)
+..+.|+|.|.|.-.-.+.. ..-.-.++.+|. ..+...... ...+.+...-+.. |.+ .||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 56778888886654433333 222335677776 444443322 1122222212222 322 3999999
Q ss_pred cchhccCChHH-HHHHHH-HHHhhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEA-CVKILK-NCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~-~~~~L~-~~~~~L~~pgG~lli~e~~~~ 288 (350)
+++||+.+... ...+.+ ..+...+ +|+.++++|.-..
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecCCc
Confidence 99999987543 334444 4455668 9999999986443
No 423
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=82.18 E-value=1.1 Score=27.91 Aligned_cols=30 Identities=7% Similarity=0.282 Sum_probs=20.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHH
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMR 70 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~ 70 (350)
+.+.+. .+.|+.+||+.+|+ +..-+.|+|+
T Consensus 14 i~~l~~---~G~si~~IA~~~gv---sr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYA---EGMSIAEIAKQFGV---SRSTVYRYLN 43 (45)
T ss_dssp HHHHHH---TT--HHHHHHHTTS----HHHHHHHHC
T ss_pred HHHHHH---CCCCHHHHHHHHCc---CHHHHHHHHh
Confidence 344444 35999999999999 7788888775
No 424
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=81.99 E-value=1 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.294 Sum_probs=23.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI 77 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~ 77 (350)
+..+...+.+ +.|..+||+.+|+ +...+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 4455555553 8999999999999 89999999998776664
No 425
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.84 E-value=1.9 Score=37.41 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHhcccCCCCc--ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------C--------CCCeEEEec
Q 018775 175 ALVSHYKDGFDSI--QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------V--------CEGIFHVGG 236 (350)
Q Consensus 175 ~~~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~~i~~~~~ 236 (350)
.+++... ++++ .+|||.-+|-|.-+.-++.. +.++++++. |-+....+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3445554 4443 49999999999999988865 678999998 43322111 1 358999999
Q ss_pred cCCC--CCC--CccEEEecchh
Q 018775 237 DMFD--AIP--KADAVFMKWIL 254 (350)
Q Consensus 237 d~~~--~~p--~~D~i~~~~vl 254 (350)
|..+ ..+ ++|+|.+--++
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9888 332 49999884433
No 426
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=81.19 E-value=1.7 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=25.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHH
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRM 71 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~ 71 (350)
++..|+..|..+ +..|..+||+.+|+ ++..+.+=++.
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lgl---S~~~v~~Ri~r 40 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGL---SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCc---CHHHHHHHHHH
Confidence 456678888875 79999999999999 66655544443
No 427
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.08 E-value=4.2 Score=36.02 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDLPH 220 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~ 220 (350)
+.+...++|+|||.|.++..+.+.. +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5678899999999999999999987 567899999743
No 428
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=81.07 E-value=1.8 Score=31.60 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
-..+.++||+..|-. +++|..|||+.+|+ +...+.|+=+.|.
T Consensus 39 ~~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 39 EDLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 345678999998876 79999999999999 7777777776665
No 429
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.01 E-value=7.1 Score=35.45 Aligned_cols=90 Identities=16% Similarity=-0.003 Sum_probs=50.4
Q ss_pred cceEEEecCCc-hH-HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHH
Q 018775 187 IQSLADVGGGT-GG-ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 187 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~ 263 (350)
..+|.=||+|. |. ++..+.+.....+++++|. ++..+.+++..-......+..+....+|+|+..- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 45788899885 32 3333444332246888888 6666655432111111112211234589888743 334455
Q ss_pred HHHHHHHhhCCCCCceEEE
Q 018775 264 KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli 282 (350)
.+++++...++ ||..++.
T Consensus 81 ~v~~~l~~~l~-~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLK-PGAIVTD 98 (307)
T ss_pred HHHHHHHhhCC-CCCEEEe
Confidence 67888888888 8875543
No 430
>PF13518 HTH_28: Helix-turn-helix domain
Probab=80.96 E-value=1.8 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGI 77 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~ 77 (350)
+.|+.++|+.+|+ +...+.+|++.....|+
T Consensus 12 g~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 12 GESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 3499999999999 88999999999988775
No 431
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.59 E-value=10 Score=34.93 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCCcceEEEecCC-chHHHHHHHHH-CCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKS-YPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~ 260 (350)
..++.+||=+||| .|.++..++++ ....+++++|. ++-.+.++..... +...+.. ....+|+|+=.-- . .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~-~~~g~d~viD~~G-~----~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIP-EDLAVDHAFECVG-G----R 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhh-hccCCcEEEECCC-C----C
Confidence 3567889989976 55666677775 55567888887 6555655532211 1111111 1114788874221 1 0
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEee
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.....+....+.++ +||+++++-.
T Consensus 234 ~~~~~~~~~~~~l~-~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIR-PQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCc-CCcEEEEEee
Confidence 01245788889999 9999998764
No 432
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=80.35 E-value=2 Score=34.75 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-CCCeE-EEeccCCCCC----CCccEEEecchhccCC--
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-CEGIF-HVGGDMFDAI----PKADAVFMKWILHDWD-- 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~i~-~~~~d~~~~~----p~~D~i~~~~vlh~~~-- 258 (350)
+.+.+-+|...=+.= .++-++...++..++... ++.-.+ .+|++ +.+.|+.++. ..||.+.+.+++.|..
T Consensus 2 ~~~g~V~GS~~PwvE-v~aL~~GA~~iltveyn~-L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVE-VMALQHGAAKILTVEYNK-LEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhh-HHHHHcCCceEEEEeecc-cccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 345666666543332 233333344555555311 111111 23333 3334554421 2499999999887752
Q ss_pred --------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 259 --------DEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 259 --------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.-+ ...+.+++.+|| |||.|++.-++-.+.
T Consensus 80 RYGDPidp~Gd-l~~m~~i~~vLK-~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 80 RYGDPIDPIGD-LRAMAKIKCVLK-PGGLLFLGVPVGTDA 117 (177)
T ss_pred ccCCCCCcccc-HHHHHHHHHhhc-cCCeEEEEeecCCcc
Confidence 222 356788999999 999999988777654
No 433
>PRK12423 LexA repressor; Provisional
Probab=79.43 E-value=2.1 Score=36.37 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-|..|||+.+|+. +...++..|++|+..|+|+...
T Consensus 25 ~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 56999999999952 5677899999999999999986
No 434
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=79.24 E-value=1.8 Score=29.10 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=34.2
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
|++.|-.. |..|+.+|++.+++ +.+.++.-|-.|...|++...
T Consensus 18 V~~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 45555554 79999999999999 889999999999999998765
No 435
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=78.75 E-value=4.2 Score=37.39 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCCcceEEEec--CCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---CCCeEEEeccCCCC----CC--CccEEEecc
Q 018775 184 FDSIQSLADVG--GGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---CEGIFHVGGDMFDA----IP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---~~~i~~~~~d~~~~----~p--~~D~i~~~~ 252 (350)
++++.+||=.| +|.|.+++.|+++.-...++....++-.+.+++ ..-|.+...|+.+. .. .+|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 66788999988 568899999999875433333333433334433 22344555555542 12 489998522
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
-...+.+..+.|+ ++|+++.+-....
T Consensus 220 ---------G~~~~~~~l~~l~-~~G~lv~ig~~~g 245 (326)
T COG0604 220 ---------GGDTFAASLAALA-PGGRLVSIGALSG 245 (326)
T ss_pred ---------CHHHHHHHHHHhc-cCCEEEEEecCCC
Confidence 2355778888999 9999998776653
No 436
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=78.59 E-value=3.3 Score=36.39 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=51.1
Q ss_pred CcceEEEecCCchHHHHHH---HHHC--CCCcEEEecc-h---hHhh---------------------------hCCC--
Q 018775 186 SIQSLADVGGGTGGALAEI---VKSY--PHIKGINFDL-P---HVVA---------------------------TAPV-- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~-~---~~~~---------------------------~a~~-- 227 (350)
-...|+|.||=-|..++.+ ++.+ ++.++.++|. + +.-. ...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 4679999999999876544 3333 4566777773 2 1110 1111
Q ss_pred --CCCeEEEeccCCCCCCC--cc-EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 --CEGIFHVGGDMFDAIPK--AD-AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 --~~~i~~~~~d~~~~~p~--~D-~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+++.++.|.|.+.+|. -+ +.++ ++=-++ -+.....|..++..|. |||.+++
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll-~lD~Dl-YesT~~aLe~lyprl~-~GGiIi~ 210 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALL-HLDCDL-YESTKDALEFLYPRLS-PGGIIIF 210 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEE-EE---S-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEE-EEeccc-hHHHHHHHHHHHhhcC-CCeEEEE
Confidence 36899999999774442 12 2221 110111 1235678999999999 9998886
No 437
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=78.52 E-value=2.4 Score=36.42 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=38.3
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|++.+.+...+.|.+|||+++++ ++.-+++.+..|+..|++..+-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEEe
Confidence 456666641126899999999999 8899999999999999999874
No 438
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.07 E-value=2.5 Score=33.79 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+-.+..|++.|.+++++.|+++|=+.+.- ++.+..-++|.|+.|+..|+|.+-..
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~ 76 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEF 76 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEe
Confidence 34567889999876678999999887752 33367889999999999999999863
No 439
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=77.99 E-value=3.4 Score=35.57 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=38.7
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
|..++..+||+.+|+ +..-++.-|+.|++.|+|+... ..++...+.+
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~------~~G~~V~~~~ 74 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN------QKGYRVASMS 74 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC------CCceEeCCCC
Confidence 367899999999999 7788999999999999999886 3445555544
No 440
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=77.76 E-value=1.2 Score=37.33 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=40.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+.+.|... +.+++++||+.+++ ++.-+||=|+.|+..|.+.+..
T Consensus 10 ~~Il~~l~~~-~~~~~~~La~~~~v---S~~TiRRDl~~L~~~g~~~r~~ 55 (185)
T PRK04424 10 KALQELIEEN-PFITDEELAEKFGV---SIQTIRLDRMELGIPELRERIK 55 (185)
T ss_pred HHHHHHHHHC-CCEEHHHHHHHHCc---CHHHHHHHHHHHhcchHHHHHH
Confidence 3466777775 79999999999999 8899999999999999999874
No 441
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=77.46 E-value=3.1 Score=35.20 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=33.2
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++|.++||+.+|+ ....+.|.|..|...|++...+
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 8899999999999999999886
No 442
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=77.33 E-value=3.3 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|++.+. .|.|+.|||..+++ +..-++-++.-|...|++....
T Consensus 48 Il~lC~---~~~SVAEiAA~L~l---PlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 48 ILELCR---RPLSVAEIAARLGL---PLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHC---CCccHHHHHHhhCC---CchhhhhhHHHHHhCCCEEEeC
Confidence 455555 59999999999999 8889999999999999999886
No 443
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=77.32 E-value=4.6 Score=31.15 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhh
Q 018775 50 QLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLS 129 (350)
Q Consensus 50 ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 129 (350)
+||+.+++ +-.-|-.+++++.-+||++..+ |...+|+.++.++..+......++.-.. ....+....+.
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~~-------Gdi~LT~~G~~f~~a~~~~rK~if~~~l-~~~~Pl~~~I~ 70 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVEE-------GDIRLTPLGRRFAEADIDERKEIFREQL-LRHVPLAAHIR 70 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeecC-------CcEEeccchHHHHHCChHHHHHHHHHHH-HhcCCHHHHHH
Confidence 47888999 8888999999999999999996 7899999999776544222222222111 11344556677
Q ss_pred HhHhcC
Q 018775 130 QCVKEG 135 (350)
Q Consensus 130 ~~l~~~ 135 (350)
..++..
T Consensus 71 ~~L~~~ 76 (120)
T PF09821_consen 71 RVLRER 76 (120)
T ss_pred HHHHhC
Confidence 777653
No 444
>PRK10736 hypothetical protein; Provisional
Probab=77.30 E-value=3.6 Score=38.39 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=43.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
..|++.|.. .|.++++|+.++|+ +...+...|-.|+-.|++.+.. ++.|+.
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~------g~~~~~ 361 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP------GGYVRL 361 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC------CcEEEE
Confidence 467888865 69999999999999 8899999999999999999997 465654
No 445
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=76.93 E-value=4.7 Score=31.16 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=42.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
-|.|.++||..++- +...++.-|..+...|+++..+ ++.|.++......
T Consensus 52 ipy~~e~LA~~~~~---~~~~V~~AL~~f~k~glIe~~e------d~~i~i~~~~~~~ 100 (121)
T PF09681_consen 52 IPYTAEMLALEFDR---PVDTVRLALAVFQKLGLIEIDE------DGVIYIPNWEKHQ 100 (121)
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCeEEeecHHHHh
Confidence 69999999999999 8999999999999999999987 5778766544433
No 446
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=76.83 E-value=2.7 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.-+|+..||+++++ .-...++.|+.|+..|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 56799999999999 8999999999999999998764
No 447
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=76.62 E-value=2 Score=29.83 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=29.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
...|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 48999999999999 88999999998888877653
No 448
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=76.61 E-value=2.4 Score=34.50 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|+|++||++.+|. +...+..-++-|...|++.+.-
T Consensus 40 ~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 89999999999999 7889999999999999999875
No 449
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=76.60 E-value=3.8 Score=35.75 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.++.-+|||+.++- +|..+|-.+..|-++|+++-.. |+.|.|.-|..+-
T Consensus 24 r~IKgeeIA~~l~r---npGTVRNqmq~LkaLgLVegvp----GPkGGY~PT~kAY 72 (294)
T COG2524 24 RPIKGEEIAEVLNR---NPGTVRNQMQSLKALGLVEGVP----GPKGGYKPTSKAY 72 (294)
T ss_pred CCcchHHHHHHHcc---CcchHHHHHHHHHhcCcccccc----CCCCCccccHHHH
Confidence 79999999999999 8899999999999999999886 3468898887664
No 450
>PRK09462 fur ferric uptake regulator; Provisional
Probab=76.35 E-value=3.5 Score=33.03 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=41.7
Q ss_pred HHHhcChhhhhhhC-CCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSH-GSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~-~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|... +++.|++||-+.+.- +..+..-++|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45567788888653 269999999988732 1226678999999999999999875
No 451
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=76.10 E-value=4.9 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-+...+|.+..+++.+|+.++|+.+|+ .+..+..||+ ..|++.+.+
T Consensus 9 ~PKa~~~d~~~~~~~~~ti~~~AK~L~i---~~~~l~~~Lr---~~g~l~~~~ 55 (111)
T PF03374_consen 9 APKAEFYDAFVDSDGLYTIREAAKLLGI---GRNKLFQWLR---EKGWLYRRG 55 (111)
T ss_pred ChhhHHHHHHHcCCCCccHHHHHHHhCC---CHHHHHHHHH---hCCceEECC
Confidence 3455677877765588999999999999 7766666666 799999963
No 452
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=76.04 E-value=4.6 Score=33.37 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=41.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++|.|...|...|+-+||+++|+ +...+.|-|-.|-..|.|....
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i---~k~~vNr~LY~L~~~~~v~~~~ 53 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI---SKHEANRCLYRLLESDAVSCED 53 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc---cHHHHHHHHHHHhhcCcEecCC
Confidence 356688899887547999999999999 7777999999999999998775
No 453
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=76.00 E-value=4.2 Score=35.19 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.|+-++-.|-|. + |..++-.+||+.+|+ +..-++.-|..|++.|+|.... ..++..++.+.
T Consensus 24 ~Lr~~Il~g~l~--p--G~~l~e~~La~~~gv---SrtPVReAL~rL~~eGlv~~~p------~rG~~V~~~~~ 84 (230)
T COG1802 24 ELREAILSGELA--P--GERLSEEELAEELGV---SRTPVREALRRLEAEGLVEIEP------NRGAFVAPLSL 84 (230)
T ss_pred HHHHHHHhCCCC--C--CCCccHHHHHHHhCC---CCccHHHHHHHHHHCCCeEecC------CCCCeeCCCCH
Confidence 344444444443 2 479999999999999 7788999999999999999996 45666666654
No 454
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=75.99 E-value=3.7 Score=34.14 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|+|-++||+.+|+ ..+.+.|.|..|...|++....
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 8899999999999999999886
No 455
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.93 E-value=4 Score=33.01 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=49.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCCCCCCccEEEecchh
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFDAIPKADAVFMKWIL 254 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~p~~D~i~~~~vl 254 (350)
+|.=+|||.+.++.+..-...+.+++.... ++.++..+. ..++.+ ..|..+-..+.|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 356689998877765443334467777777 555443321 123322 23333223458888763
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.|......+++++...++ ++-.+++
T Consensus 77 --vPs~~~~~~~~~l~~~l~-~~~~ii~ 101 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLK-KGQIIIS 101 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSH-TT-EEEE
T ss_pred --ccHHHHHHHHHHHhhccC-CCCEEEE
Confidence 334445688999999998 7766665
No 456
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=75.81 E-value=3 Score=35.51 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=38.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
|..++-.+||+.+|+ +..-++.-|..|+..|+|+... +.++..++.+
T Consensus 32 G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~------~~G~~V~~~~ 78 (212)
T TIGR03338 32 GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK------NRGVFVREIS 78 (212)
T ss_pred CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec------CCCeEEecCC
Confidence 467899999999999 7888999999999999999886 3445555543
No 457
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.63 E-value=4.4 Score=36.18 Aligned_cols=58 Identities=5% Similarity=0.029 Sum_probs=49.2
Q ss_pred CCCeEEEeccCCC-----CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 228 CEGIFHVGGDMFD-----AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 228 ~~~i~~~~~d~~~-----~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
..||.++++|+.+ |..+.|-+++..+-..+++.+...++.++.+.+. ||.++++-...
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~-~gA~VifRtaa 368 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAE-AGARVIFRTAA 368 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccC-CCcEEEEeccc
Confidence 5789999999987 2335999999988888899999999999999999 99999885433
No 458
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=75.40 E-value=5.2 Score=28.29 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=43.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+|..+.. .+.|-++||+.+|+ +...+...++.|...|+=..... ...|++.....
T Consensus 11 ll~~~~~--~~~SGe~La~~Lgi---SRtaVwK~Iq~Lr~~G~~I~s~~-----~kGY~L~~~~~ 65 (79)
T COG1654 11 LLLLLTG--NFVSGEKLAEELGI---SRTAVWKHIQQLREEGVDIESVR-----GKGYLLPQLPD 65 (79)
T ss_pred HHHHcCC--CcccHHHHHHHHCc---cHHHHHHHHHHHHHhCCceEecC-----CCceeccCccc
Confidence 4445543 69999999999999 89999999999999999766652 24787765544
No 459
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.94 E-value=11 Score=34.57 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=69.0
Q ss_pred EEEecCCchHHHHHHHHHCCCCcE-EEecc-hhHhhhCCC-CCCeEEEeccCCC-C---CCCccEEEecchhccCC----
Q 018775 190 LADVGGGTGGALAEIVKSYPHIKG-INFDL-PHVVATAPV-CEGIFHVGGDMFD-A---IPKADAVFMKWILHDWD---- 258 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~p~~D~i~~~~vlh~~~---- 258 (350)
|+|+=||.|.++..+.+.. .++ ..+|. +.+++..+. ... .+..+|+.+ . .|+.|+++...-...++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999999988764 444 45676 555554332 111 445677776 2 45689998764444443
Q ss_pred ----hHHHHHHHHHHHhh---CCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 259 ----DEACVKILKNCRQA---IPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 259 ----~~~~~~~L~~~~~~---L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
++....++.+..++ ++ | +++++|.+..-.. . .......+|.+.|++.||.
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~-P--~~~v~ENV~~l~~------------------~--~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKK-P--KFFLLENVKGLVS------------------H--DKGRTFKVIIETLEELGYK 134 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcC-C--CEEEeeccHHHHh------------------c--ccchHHHHHHHHHHhCCCE
Confidence 11122333434333 35 5 5666665442110 0 1112467888889999998
Q ss_pred eeE
Q 018775 332 RCK 334 (350)
Q Consensus 332 ~~~ 334 (350)
+..
T Consensus 135 v~~ 137 (315)
T TIGR00675 135 VYY 137 (315)
T ss_pred EEE
Confidence 644
No 460
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=74.83 E-value=9.7 Score=28.19 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=43.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeeccc-CCCC-CCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQS-SDGG-DETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~-~~~~~~~t~~s~~l~ 102 (350)
|+-.|.. +|.+--||++.+ .+ ++..+.+.|+.|+..|+++.... +.++ ..-.|++|+.++...
T Consensus 9 iL~~L~~--~~~~GYei~~~l~~~~~~~~~i---~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 9 ILKTLSL--GPLHGYGIAQRIQQISEDVLQV---EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHcCCcccc---CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 4445554 688888888775 34 77889999999999999998421 1111 124699998887444
No 461
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.92 E-value=37 Score=25.90 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCC----CCccEEEecchhccCChH
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI----PKADAVFMKWILHDWDDE 260 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~----p~~D~i~~~~vlh~~~~~ 260 (350)
....+|++||-|.=......++++ +..++..|+.+- .+ ...++++.-|+++|- .++|+|.+-. |++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 345699999888665554444443 367788887333 33 367899999999963 3588887743 455
Q ss_pred HHHHHHHHHHhhCCCCCceEEE
Q 018775 261 ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli 282 (350)
+....+-++.++.+ ..++|
T Consensus 82 El~~~ildva~aVg---a~l~I 100 (129)
T COG1255 82 ELQSAILDVAKAVG---APLYI 100 (129)
T ss_pred HHHHHHHHHHHhhC---CCEEE
Confidence 66666666666655 44444
No 462
>PRK11642 exoribonuclease R; Provisional
Probab=73.83 E-value=4.7 Score=41.90 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=37.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCC-cccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPD-IPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~-~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|++.|...+.|++..+|++.+++++.. ...|.+.|++|...|.|.+..
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 556665434799999999999994312 356999999999999999876
No 463
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=73.65 E-value=12 Score=30.05 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHHHhcCh-------hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 18 MFAFADSMALKSAVELRL-------ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 18 ~~g~~~~~~l~~~~~lgl-------fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
+++-|...|+.++.+.++ +-.+.-.+-|+++.+|+..++.. +...+..-|+-|...|+++..+. +..-
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~---gkev 138 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS---GKEV 138 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC---CceE
Confidence 346677788888866443 33443344799999999999995 56778888999999999999872 2234
Q ss_pred eEecChhch
Q 018775 91 LYKMTHISK 99 (350)
Q Consensus 91 ~~~~t~~s~ 99 (350)
+|..|+.+.
T Consensus 139 Ty~vTa~G~ 147 (199)
T COG5631 139 TYEVTALGH 147 (199)
T ss_pred EEEEecchH
Confidence 688887664
No 464
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.64 E-value=19 Score=32.54 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=52.6
Q ss_pred CcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCC-CCccEEEecchhccCChHHH
Q 018775 186 SIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAI-PKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 186 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-p~~D~i~~~~vlh~~~~~~~ 262 (350)
++.++|=+||| .|.++..+++...-..++++|. ++-++.+.... + -|..+.. ..+|+|+-.- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~-----G~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDAS-----GD--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECC-----CC---
Confidence 35577777865 7888888888764334556676 55555554311 1 1111111 2488887532 11
Q ss_pred HHHHHHHHhhCCCCCceEEEEee
Q 018775 263 VKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
...+..+.+.++ |+|+++++-.
T Consensus 211 ~~~~~~~~~~l~-~~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLA-KGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhh-cCcEEEEEee
Confidence 135778889999 9999998764
No 465
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=73.41 E-value=4.4 Score=35.03 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=33.4
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|+|.++||+.+|+ ....+.|.|..|...|++...+
T Consensus 184 ~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 184 TMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred cccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 6899999999999 8899999999999999999996
No 466
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=73.34 E-value=4.6 Score=36.22 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCeEEEeccCCCCCC------C-ccEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc
Q 018775 228 CEGIFHVGGDMFDAIP------K-ADAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299 (350)
Q Consensus 228 ~~~i~~~~~d~~~~~p------~-~D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~ 299 (350)
.-+|.|++.|....++ + ||+|+++ +..|.+.++ +.++++ |++.|++ |...
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a-~~A~Lvv-EtaK------------ 256 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALA-PDAVLVV-ETAK------------ 256 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhC-CCCEEEE-Ecch------------
Confidence 3567788887776332 2 9988664 666665553 667789 9977664 4321
Q ss_pred hhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 300 LVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 300 ~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
.+.++.--.. .--.+.+.++++++||+.+.
T Consensus 257 fmvdLrKEq~-----~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 257 FMVDLRKEQL-----QEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred hheeCCHHHH-----HHHHHHHHHHHHHCCCcccc
Confidence 1122211110 11257888999999998764
No 467
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.32 E-value=17 Score=34.13 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=47.3
Q ss_pred ceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCC------CCCccEEEec
Q 018775 188 QSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDA------IPKADAVFMK 251 (350)
Q Consensus 188 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~------~p~~D~i~~~ 251 (350)
.+||=|||| .|......+.+..+..+++.|+ ++-++++.. ..+++....|..+. +.++|+++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 478889987 6777777666666688999998 677777654 35899999999883 2357887763
No 468
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.09 E-value=16 Score=33.60 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCe-EEEeccCCC---CCCCccEEEecchhcc
Q 018775 185 DSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGI-FHVGGDMFD---AIPKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i-~~~~~d~~~---~~p~~D~i~~~~vlh~ 256 (350)
.++.+||=+||| .|.++..+++.....++++.|. ++-.+.+++ .+.+ .....++.+ ....+|+++-.-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~---- 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS---- 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC----
Confidence 356788878876 6677777787753335777776 666666554 1111 111111111 112378877432
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..+ ..++.+.+.++ |||+++++..
T Consensus 244 -G~~---~~~~~~~~~l~-~~G~iv~~G~ 267 (343)
T PRK09880 244 -GHP---SSINTCLEVTR-AKGVMVQVGM 267 (343)
T ss_pred -CCH---HHHHHHHHHhh-cCCEEEEEcc
Confidence 111 35777888999 9999998764
No 469
>PHA02591 hypothetical protein; Provisional
Probab=73.01 E-value=3.9 Score=28.45 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.4
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHH
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRM 71 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~ 71 (350)
-..|.+ .+.|.++||+.+|+ +.+.+++.|+-
T Consensus 52 A~eL~e--qGlSqeqIA~~LGV---sqetVrKYL~~ 82 (83)
T PHA02591 52 THELAR--KGFTVEKIASLLGV---SVRKVRRYLES 82 (83)
T ss_pred HHHHHH--cCCCHHHHHHHhCC---CHHHHHHHHhc
Confidence 345555 69999999999999 88899888863
No 470
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.84 E-value=6.5 Score=32.49 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=32.4
Q ss_pred CccEEEecchhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 244 KADAVFMKWILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
..|||++++.||+++. +...+++.+++++|+ |...++ .-...|
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp-~~allI-W~tt~P 102 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLP-IECLIV-WNTAMP 102 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCC-CccEEE-EecCCC
Confidence 3799999999999864 456788888999998 885554 444444
No 471
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=72.50 E-value=4.7 Score=34.95 Aligned_cols=46 Identities=11% Similarity=0.259 Sum_probs=40.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+|+.|....+-++..+||+++|+ +...+++=++.|++.|+++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 577788762268999999999999 7889999999999999999885
No 472
>PRK01381 Trp operon repressor; Provisional
Probab=72.35 E-value=4.8 Score=29.72 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
..+.+++|+..|-. |++|.-|||+.+|+ +...+.|-=++|-
T Consensus 40 al~~R~~I~~~L~~--g~~sQREIa~~lGv---SiaTITRgsn~Lk 80 (99)
T PRK01381 40 ALGTRVRIVEELLR--GELSQREIKQELGV---GIATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHhCC---ceeeehhhHHHhc
Confidence 34678999999986 79999999999999 6555655555544
No 473
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=72.27 E-value=25 Score=30.34 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=47.9
Q ss_pred CcceEEEecCCchHHH--HHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCCccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGAL--AEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~--~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~ 261 (350)
.+.+||=||||.-..- ..|++...+++++.-++ +++.+.+. ..+++++..++.. +...+++|++.- +|++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaAT-----dD~~ 97 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIAT-----DDEK 97 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEECC-----CCHH
Confidence 5779999999977654 33455444444444355 45444433 5679999988876 566688777742 3554
Q ss_pred HHHHHHHHH
Q 018775 262 CVKILKNCR 270 (350)
Q Consensus 262 ~~~~L~~~~ 270 (350)
.-+-+.+..
T Consensus 98 vN~~I~~~a 106 (223)
T PRK05562 98 LNNKIRKHC 106 (223)
T ss_pred HHHHHHHHH
Confidence 444344333
No 474
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=71.82 E-value=4.7 Score=33.25 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=39.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
..|++.|.+. |.+|=++||+.+|+ ...-++++|.+|...|++...
T Consensus 21 ~~v~~~l~~k-ge~tDeela~~l~i---~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK-GELTDEELAELLGI---KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc-CCcChHHHHHHhCc---cHHHHHHHHHHHHhCCceEEE
Confidence 4467778764 57999999999999 889999999999999999954
No 475
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=71.77 E-value=2.6 Score=27.91 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=30.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
-++.|++.|-+. ++.|++|||+.+|+ +++.++.-+..|-
T Consensus 6 rq~~Ll~~L~~~-~~~~~~ela~~l~~---S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKN-KWITLKELAKKLNI---SERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHH-TSBBHHHHHHHCTS----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCcHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 345677777653 79999999999999 8888888887776
No 476
>PRK00215 LexA repressor; Validated
Probab=71.63 E-value=6.2 Score=33.50 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.|..|||+.+|+. +...+.++|+.|+..|++++..
T Consensus 22 ~~~s~~ela~~~~~~--~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 22 YPPSRREIADALGLR--SPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEeCC
Confidence 578999999999982 3577999999999999999986
No 477
>PRK09954 putative kinase; Provisional
Probab=71.59 E-value=3.6 Score=38.36 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=38.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCcee
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFA 79 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~ 79 (350)
+..|+..|.++ +.+|..|||+.+++ +...+++.|+.|...|++.
T Consensus 5 ~~~il~~l~~~-~~~s~~~la~~l~~---s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN-PLIQQNEIADILQI---SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCcC
Confidence 34577788775 69999999999999 8899999999999999984
No 478
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=71.58 E-value=4.1 Score=32.66 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=35.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
-|++.|-.. +.+|-++||+.+|+ +...++++|..|...+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i---~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGI---KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHhhhcc
Confidence 467777665 69999999999999 899999999999995554
No 479
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.45 E-value=8.3 Score=33.30 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=42.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEecc----CCCC-C---CCccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGD----MFDA-I---PKADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d----~~~~-~---p~~D~i 248 (350)
...++||||-|.--.=--+-.+--+.++++.|+ +..++.|+. ...|+++... ++.. . ..||..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 578999997664322111222223678899888 666665543 3345554332 2221 1 239999
Q ss_pred Eecchhcc
Q 018775 249 FMKWILHD 256 (350)
Q Consensus 249 ~~~~vlh~ 256 (350)
+|+--+|.
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99988886
No 480
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=70.91 E-value=7.1 Score=33.50 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|..++..+||+.+|+ +..-++.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGM---SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCC---CchhHHHHHHHHHHCCCEEecC
Confidence 367788999999999 7788999999999999999876
No 481
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.87 E-value=15 Score=34.94 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=66.8
Q ss_pred CcceEEEecC-CchHH--HHHHHH----HCCCCcEEEecc--hhHhhhCCC---CCCeEEEeccCCC-CC----------
Q 018775 186 SIQSLADVGG-GTGGA--LAEIVK----SYPHIKGINFDL--PHVVATAPV---CEGIFHVGGDMFD-AI---------- 242 (350)
Q Consensus 186 ~~~~vLDvG~-G~G~~--~~~l~~----~~p~~~~~~~D~--~~~~~~a~~---~~~i~~~~~d~~~-~~---------- 242 (350)
++..|+=||= |+|-+ +..|+. +...+-.+..|. |.++++.+. .-.|.|..-+-.+ |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4677887762 45533 233443 223334567775 888887764 4456665543333 32
Q ss_pred --CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 243 --PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 243 --p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
..||+++.--.-.+--|++...=+++++++++ |.-.|+|+|......
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~-P~E~llVvDam~GQd 227 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN-PDETLLVVDAMIGQD 227 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC-CCeEEEEEecccchH
Confidence 12899988433333337778888999999999 999999999877654
No 482
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=70.14 E-value=14 Score=28.63 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=44.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC----CccEEEecchhccCChH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP----KADAVFMKWILHDWDDE 260 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p----~~D~i~~~~vlh~~~~~ 260 (350)
+..+|++||=|.=.-....+++. +..++..|. +. .+ ...+.++.-|+++|-. ++|+|.+.+ |+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 45599999988665555444443 378888888 44 22 2578899999999643 589998855 344
Q ss_pred HHHHHHHHHHhhCCCCCceEEEE
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...-+.++.+... .-++|.
T Consensus 82 El~~~il~lA~~v~---adlii~ 101 (127)
T PF03686_consen 82 ELQPPILELAKKVG---ADLIIR 101 (127)
T ss_dssp TSHHHHHHHHHHHT----EEEEE
T ss_pred HHhHHHHHHHHHhC---CCEEEE
Confidence 45555666666644 455553
No 483
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=70.13 E-value=5.9 Score=33.22 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-++|-++||..+|+ ..+.+.|.|..|...|++...+
T Consensus 148 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 183 (202)
T PRK13918 148 IYATHDELAAAVGS---VRETVTKVIGELSREGYIRSGY 183 (202)
T ss_pred ecCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcCC
Confidence 37899999999999 8899999999999999999764
No 484
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=70.06 E-value=4.4 Score=30.38 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.-+|+..||+++++ .-.+.++.|+.|++.|++....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEE
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEe
Confidence 46899999999999 8899999999999999998875
No 485
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=69.92 E-value=5.9 Score=31.02 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.9
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhc----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRI----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++.|...|=.. ++.|+.+|.+.+ ++ ....+.++|+-|...|+|.+..
T Consensus 6 E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~---~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 6 EWEVMRVVWTL-GETTSRDIIRILAEKKDW---SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHhhccCC---cHHHHHHHHHHHHHCCceeeec
Confidence 44455555333 689999966665 66 6788999999999999999775
No 486
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=69.71 E-value=6 Score=37.99 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=35.6
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+...|.+ +|.|+.||++.+|+ +...+.+.|..| .|+|...+
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~ 45 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFG 45 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEec
Confidence 4456665 89999999999999 899999999999 88888765
No 487
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=69.47 E-value=11 Score=32.63 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-++|-++||..+|+ ....+.|.|..|...|++...+
T Consensus 178 i~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~~ 213 (230)
T PRK09391 178 LPMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLSG 213 (230)
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 37899999999999 8899999999999999998774
No 488
>PHA01634 hypothetical protein
Probab=69.32 E-value=5.1 Score=31.11 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=29.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP 226 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 226 (350)
.+.+|+|||++.|..++.++-+... .++.++. +...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHH
Confidence 5789999999999999999887432 4566665 55544443
No 489
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=69.22 E-value=60 Score=26.35 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=67.3
Q ss_pred cCCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC------CCCccEEEecchhccCChHHHHH
Q 018775 194 GGGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA------IPKADAVFMKWILHDWDDEACVK 264 (350)
Q Consensus 194 G~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~------~p~~D~i~~~~vlh~~~~~~~~~ 264 (350)
=||+|..+..+++.. .+.+++++-+ ++-.+. ..+++++.+|+.++ +.++|+|+....-.. .+ ..
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~-~~---~~ 76 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP-KD---VD 76 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT-TH---HH
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc-cc---cc
Confidence 367777777766643 2367777766 544444 56899999999983 235898887553221 22 33
Q ss_pred HHHHHHhhCCC-CCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 265 ILKNCRQAIPD-KSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 265 ~L~~~~~~L~~-pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
..+++.++++. +-.+++++-...-...... .......-.+ . .......+..+.+++.|+..+-++|.
T Consensus 77 ~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~--~~~~~~~~~~----~-~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 77 AAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG--LFSDEDKPIF----P-EYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTGTTTCTS--EEEGGTCGGG----H-HHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred ccccccccccccccccceeeeccccCCCCCc--ccccccccch----h-hhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 44444444431 1125555443332222110 0000000000 0 11112345567778889987777764
No 490
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=69.19 E-value=8.6 Score=29.56 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
-|.+.+.||..++- +...++.-|..+...|+++..+ ++.+.++....
T Consensus 50 ipy~~e~LA~~~~~---~~~~V~~Al~~f~k~glIe~~d------~g~i~i~~~~~ 96 (119)
T TIGR01714 50 APYNAEMLATMFNR---NVGDIRITLQTLESLGLIEKKN------NGDIFLENWEK 96 (119)
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCcEEehhHHH
Confidence 69999999999999 8899999999999999999997 56676664443
No 491
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=68.92 E-value=5.8 Score=34.15 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=32.8
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|-++||+.+|+ ..+.+.|.|..|...|+++..+
T Consensus 169 ~~t~~~lA~~lG~---sretvsR~L~~L~~~G~I~~~~ 203 (226)
T PRK10402 169 HEKHTQAAEYLGV---SYRHLLYVLAQFIQDGYLKKSK 203 (226)
T ss_pred cchHHHHHHHHCC---cHHHHHHHHHHHHHCCCEEeeC
Confidence 5688999999999 8899999999999999999986
No 492
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=68.81 E-value=30 Score=27.70 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=30.5
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD 240 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~ 240 (350)
..-|+|+|=|.|.+=-.|.+.+|+-++.++|..-.+.-.-..+.-.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999963211111112223466677665
No 493
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=68.80 E-value=6.1 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.+++.+++.++.|.. -.......|..+...|+++.++ +++++|+.+.
T Consensus 19 ~Gi~~~~~~~~~g~~--~~~~~~~~l~~l~~~Gll~~~~-------~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGID--FAEEFQKELEELQEDGLLEIDG-------GRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT----THHH-HHHHHHHHHTTSEEE-S-------SEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcC--HHHHHHHHHHHHHHCCCEEEeC-------CEEEECcccC
Confidence 588999999999982 1344477799999999999996 8999998754
No 494
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.66 E-value=44 Score=27.00 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=44.6
Q ss_pred CcceEEEecCCchHH--HHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCCCccEEEecchhccCChHHH
Q 018775 186 SIQSLADVGGGTGGA--LAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
.+.+||=||||.=.. +..|++. +..+++++ |+..+...+...+++....+.+ ++.++|++++. .++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa-----T~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA-----TNQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC-----CCCHHH
Confidence 578999999995443 3344454 45666665 4443333333456777666666 56679988873 234444
Q ss_pred HHHHHHHH
Q 018775 263 VKILKNCR 270 (350)
Q Consensus 263 ~~~L~~~~ 270 (350)
-..+.+..
T Consensus 84 N~~i~~~a 91 (157)
T PRK06719 84 NMMVKQAA 91 (157)
T ss_pred HHHHHHHH
Confidence 44444443
No 495
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=68.60 E-value=7.3 Score=25.66 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCCHHHHHhhc---CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRI---DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~---~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++-+||.+++ ++ ++.....+|+.|++.|.+..++
T Consensus 16 ~G~~keeLrsrl~~~~l---~~k~~~~ll~~l~~~g~l~~~g 54 (59)
T PF09106_consen 16 PGMPKEELRSRLFKPRL---PPKLFNALLEALVAEGRLKVEG 54 (59)
T ss_dssp S-EEHHHHHHHCST-TS----HCCHHHHHHHHHHTTSEEEES
T ss_pred cCcCHHHHHHHHhhccC---CHHHHHHHHHHHHHCCCeeeEC
Confidence 578899999888 67 8899999999999999999996
No 496
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=68.06 E-value=26 Score=34.22 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=61.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC----CCcEEEecc-hhHhhhCCC------CC-CeEEEeccCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP----HIKGINFDL-PHVVATAPV------CE-GIFHVGGDMFD- 240 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~-~i~~~~~d~~~- 240 (350)
.-+++.+. ..+..+|.|-.||+|++.....+... +..+.|++. +.....++- .+ .+....+|-..
T Consensus 176 ~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 176 ELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 34455555 34566999999999999877555432 367888886 665554432 11 23444555444
Q ss_pred CCC-------CccEEEecchh--ccCC--------------------hHHH-HHHHHHHHhhCCCCCceEEE
Q 018775 241 AIP-------KADAVFMKWIL--HDWD--------------------DEAC-VKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 241 ~~p-------~~D~i~~~~vl--h~~~--------------------~~~~-~~~L~~~~~~L~~pgG~lli 282 (350)
|.. .||.|+.+-=. -.|. .+.. -..+.++...|+ |||+..|
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~-~~g~aai 324 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLK-PGGRAAI 324 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcC-CCceEEE
Confidence 311 27766663111 1111 1112 577888888888 8875544
No 497
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=68.00 E-value=4.9 Score=30.31 Aligned_cols=81 Identities=26% Similarity=0.237 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC--C-----CCccEEEecchhccCChHHHHH
Q 018775 195 GGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA--I-----PKADAVFMKWILHDWDDEACVK 264 (350)
Q Consensus 195 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----p~~D~i~~~~vlh~~~~~~~~~ 264 (350)
||.|.++..+++.+ .+..++++|. ++.++.+++. .+.++.||..++ + ..+|.+++..- ++.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45556666666532 3457899998 7777777643 388999999983 1 24776665321 2333334
Q ss_pred HHHHHHhhCCCCCceEEE
Q 018775 265 ILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 265 ~L~~~~~~L~~pgG~lli 282 (350)
+...+ +.+. |..++++
T Consensus 79 ~~~~~-r~~~-~~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELN-PDIRIIA 94 (116)
T ss_dssp HHHHH-HHHT-TTSEEEE
T ss_pred HHHHH-HHHC-CCCeEEE
Confidence 44444 4445 5666653
No 498
>PRK13239 alkylmercury lyase; Provisional
Probab=67.64 E-value=5.1 Score=33.97 Aligned_cols=36 Identities=14% Similarity=0.364 Sum_probs=28.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
-|+..|.+ |.|.|+++||+.+|+ +...+++.|+.|.
T Consensus 26 ~llr~la~-G~pvt~~~lA~~~~~---~~~~v~~~L~~l~ 61 (206)
T PRK13239 26 PLLRLLAK-GRPVSVTTLAAALGW---PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCC---CHHHHHHHHHhCC
Confidence 34555664 589999999999999 8888888777764
No 499
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=67.60 E-value=17 Score=33.02 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=61.6
Q ss_pred cceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC---CCCCccEEEecchhccCCh
Q 018775 187 IQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD---AIPKADAVFMKWILHDWDD 259 (350)
Q Consensus 187 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~---~~p~~D~i~~~~vlh~~~~ 259 (350)
..+|.=||+| .|..+..++-- -+..++++|+ ..-+.+... ..|+....-+... ..+.+|+++..-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 5678889999 46666666654 3678899998 566666554 4566655443332 4567999887543322122
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+ .-+.+++.+.|+ ||+.++ |...+.
T Consensus 247 P--kLvt~e~vk~Mk-pGsViv--DVAiDq 271 (371)
T COG0686 247 P--KLVTREMVKQMK-PGSVIV--DVAIDQ 271 (371)
T ss_pred c--eehhHHHHHhcC-CCcEEE--EEEEcC
Confidence 2 345778899999 998654 444443
No 500
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=67.53 E-value=6.1 Score=33.64 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA 225 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 225 (350)
.+.++..+. .++..|||-=||+|.++.+..+. +.+++++|+ ++.++.|
T Consensus 181 ~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 181 IERLIKAST---NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHS----TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred HHHHHHhhh---ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHh
Confidence 344555544 56889999999999999887775 567999999 7777655
Done!