Query 018775
Match_columns 350
No_of_seqs 186 out of 1972
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.6E-57 1.2E-61 418.8 31.1 334 1-349 1-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.2E-53 1.1E-57 393.9 34.4 344 4-349 14-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 5.1E-52 1.8E-56 386.5 32.9 343 6-350 17-367 (368)
4 3lst_A CALO1 methyltransferase 100.0 9.7E-52 3.3E-56 382.3 34.3 326 6-350 18-348 (348)
5 3gwz_A MMCR; methyltransferase 100.0 9E-51 3.1E-55 378.5 31.6 324 8-350 36-369 (369)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 8.3E-51 2.8E-55 377.5 30.1 342 4-349 4-358 (358)
7 1fp2_A Isoflavone O-methyltran 100.0 1E-50 3.5E-55 376.0 30.0 337 3-349 9-352 (352)
8 3i53_A O-methyltransferase; CO 100.0 5.8E-51 2E-55 374.9 24.3 319 10-350 5-332 (332)
9 2ip2_A Probable phenazine-spec 100.0 2.3E-49 7.8E-54 364.6 32.1 319 9-349 7-333 (334)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.5E-49 8.7E-54 369.3 30.0 340 4-349 16-372 (372)
11 3dp7_A SAM-dependent methyltra 100.0 2E-47 6.8E-52 355.1 23.4 327 3-349 8-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 2.5E-46 8.5E-51 349.5 24.4 326 7-350 13-356 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 8E-46 2.7E-50 344.4 26.0 323 10-350 19-356 (360)
14 2r3s_A Uncharacterized protein 100.0 7.9E-45 2.7E-49 334.4 27.9 316 11-349 7-334 (335)
15 1x19_A CRTF-related protein; m 100.0 1.8E-44 6.2E-49 335.0 29.8 314 4-349 24-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 4.3E-44 1.5E-48 331.7 27.5 314 7-349 21-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 2.4E-22 8.3E-27 177.4 13.2 165 184-349 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 2.2E-20 7.6E-25 162.3 14.0 165 184-349 42-225 (234)
19 1ve3_A Hypothetical protein PH 99.8 1.8E-19 6.2E-24 155.6 10.1 161 186-350 38-227 (227)
20 3hnr_A Probable methyltransfer 99.8 2.1E-18 7.2E-23 148.2 16.6 163 176-350 37-212 (220)
21 3dh0_A SAM dependent methyltra 99.8 1.2E-18 4.2E-23 149.6 14.6 155 174-349 27-192 (219)
22 3ou2_A SAM-dependent methyltra 99.8 6.8E-18 2.3E-22 144.6 15.6 161 184-349 44-215 (218)
23 3ujc_A Phosphoethanolamine N-m 99.8 3.2E-18 1.1E-22 151.3 13.9 155 174-339 45-207 (266)
24 3bus_A REBM, methyltransferase 99.8 5.9E-18 2E-22 150.4 15.5 157 173-339 50-217 (273)
25 3dlc_A Putative S-adenosyl-L-m 99.8 2.8E-19 9.7E-24 153.3 6.4 169 173-349 33-214 (219)
26 1kpg_A CFA synthase;, cyclopro 99.8 9E-18 3.1E-22 150.4 16.5 161 174-339 54-229 (287)
27 2o57_A Putative sarcosine dime 99.8 9.2E-18 3.1E-22 151.1 15.6 153 174-339 68-235 (297)
28 3pfg_A N-methyltransferase; N, 99.8 2.2E-18 7.5E-23 152.4 11.1 162 185-349 49-248 (263)
29 1vl5_A Unknown conserved prote 99.8 2.8E-18 9.6E-23 151.4 11.5 154 173-338 26-190 (260)
30 3vc1_A Geranyl diphosphate 2-C 99.8 2.6E-17 9E-22 149.2 17.4 163 165-339 97-270 (312)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.7 2.7E-18 9.2E-23 150.8 10.1 149 174-339 83-239 (254)
32 1nkv_A Hypothetical protein YJ 99.7 1.2E-17 4E-22 147.0 14.0 152 174-338 26-187 (256)
33 3hem_A Cyclopropane-fatty-acyl 99.7 1.2E-17 4E-22 150.9 14.2 163 174-340 62-245 (302)
34 3h2b_A SAM-dependent methyltra 99.7 5.6E-18 1.9E-22 143.8 10.2 146 187-348 42-193 (203)
35 3dli_A Methyltransferase; PSI- 99.7 4.3E-17 1.5E-21 142.1 15.9 141 184-339 39-185 (240)
36 2fk8_A Methoxy mycolic acid sy 99.7 4.2E-17 1.4E-21 148.3 16.0 163 173-339 79-255 (318)
37 3ocj_A Putative exported prote 99.7 6.6E-18 2.3E-22 152.7 10.5 165 184-349 116-303 (305)
38 3bxo_A N,N-dimethyltransferase 99.7 1.4E-17 4.7E-22 144.9 12.1 163 185-350 39-239 (239)
39 1xxl_A YCGJ protein; structura 99.7 1.4E-17 4.9E-22 145.1 11.7 153 174-338 11-174 (239)
40 3f4k_A Putative methyltransfer 99.7 4E-17 1.4E-21 143.6 14.6 143 184-339 44-197 (257)
41 3kkz_A Uncharacterized protein 99.7 4.9E-17 1.7E-21 144.1 13.6 143 184-339 44-197 (267)
42 3g2m_A PCZA361.24; SAM-depende 99.7 3.5E-17 1.2E-21 147.5 12.7 171 173-349 72-291 (299)
43 3mgg_A Methyltransferase; NYSG 99.7 2.4E-17 8.3E-22 146.7 11.3 151 184-338 35-198 (276)
44 1pjz_A Thiopurine S-methyltran 99.7 3E-17 1E-21 139.4 11.1 134 184-338 20-176 (203)
45 3lcc_A Putative methyl chlorid 99.7 3.5E-17 1.2E-21 142.2 11.5 132 187-339 67-208 (235)
46 2qm3_A Predicted methyltransfe 99.7 2.7E-16 9.1E-21 146.0 17.9 214 34-286 47-279 (373)
47 3i9f_A Putative type 11 methyl 99.7 2.3E-17 7.8E-22 135.9 9.5 142 184-349 15-159 (170)
48 3jwg_A HEN1, methyltransferase 99.7 7.5E-17 2.6E-21 138.5 13.0 144 184-335 27-189 (219)
49 2qe6_A Uncharacterized protein 99.7 1.1E-16 3.7E-21 142.3 14.0 141 185-334 76-238 (274)
50 3l8d_A Methyltransferase; stru 99.7 7E-17 2.4E-21 140.7 12.5 142 185-338 52-200 (242)
51 2ex4_A Adrenal gland protein A 99.7 2.6E-17 9E-22 143.5 9.3 138 186-339 79-226 (241)
52 4fsd_A Arsenic methyltransfera 99.7 9.6E-17 3.3E-21 149.6 13.4 144 185-337 82-250 (383)
53 3g5l_A Putative S-adenosylmeth 99.7 6.3E-17 2.2E-21 142.1 11.1 157 175-338 35-216 (253)
54 3e23_A Uncharacterized protein 99.7 8.1E-17 2.8E-21 137.5 10.7 138 184-338 41-182 (211)
55 3ege_A Putative methyltransfer 99.7 5E-16 1.7E-20 137.1 15.8 151 174-338 24-178 (261)
56 3gu3_A Methyltransferase; alph 99.7 1.4E-16 4.7E-21 142.5 11.9 151 184-338 20-190 (284)
57 3bkw_A MLL3908 protein, S-aden 99.7 3.3E-16 1.1E-20 136.4 13.8 157 175-338 34-214 (243)
58 3jwh_A HEN1; methyltransferase 99.7 1.4E-16 4.7E-21 136.7 11.0 143 184-334 27-188 (217)
59 2p7i_A Hypothetical protein; p 99.7 1.7E-16 5.9E-21 138.5 11.7 147 185-338 41-199 (250)
60 3sm3_A SAM-dependent methyltra 99.7 2.9E-16 9.9E-21 135.9 12.0 149 184-337 28-206 (235)
61 1y8c_A S-adenosylmethionine-de 99.7 3.1E-16 1.1E-20 136.7 11.9 162 186-350 37-245 (246)
62 2xvm_A Tellurite resistance pr 99.7 5.7E-16 1.9E-20 130.6 12.8 140 176-337 24-172 (199)
63 3cgg_A SAM-dependent methyltra 99.7 8E-16 2.7E-20 129.1 13.5 136 185-349 45-194 (195)
64 3ccf_A Cyclopropane-fatty-acyl 99.7 2.7E-16 9.1E-21 140.2 11.1 153 175-338 48-210 (279)
65 3bkx_A SAM-dependent methyltra 99.7 5.1E-16 1.8E-20 137.9 12.7 160 174-338 33-219 (275)
66 2p35_A Trans-aconitate 2-methy 99.7 5.9E-16 2E-20 136.2 12.3 148 175-332 24-184 (259)
67 3g07_A 7SK snRNA methylphospha 99.7 6.4E-17 2.2E-21 145.3 5.6 146 185-338 45-269 (292)
68 3d2l_A SAM-dependent methyltra 99.7 7.3E-16 2.5E-20 134.2 12.1 161 185-349 32-242 (243)
69 3ggd_A SAM-dependent methyltra 99.6 9.5E-16 3.2E-20 133.9 11.7 149 184-338 54-219 (245)
70 3e8s_A Putative SAM dependent 99.6 2.5E-16 8.7E-21 135.5 7.8 165 175-349 43-226 (227)
71 4htf_A S-adenosylmethionine-de 99.6 4.8E-16 1.6E-20 139.0 9.8 156 175-340 60-234 (285)
72 1vlm_A SAM-dependent methyltra 99.6 1.4E-15 4.9E-20 130.6 11.3 135 187-338 48-188 (219)
73 2a14_A Indolethylamine N-methy 99.6 2.6E-16 8.9E-21 139.1 6.8 151 184-349 53-259 (263)
74 2i62_A Nicotinamide N-methyltr 99.6 8.3E-16 2.8E-20 135.7 9.6 151 184-349 54-260 (265)
75 2gb4_A Thiopurine S-methyltran 99.6 2.3E-15 7.9E-20 131.9 11.6 132 185-337 67-226 (252)
76 2yqz_A Hypothetical protein TT 99.6 2.4E-15 8.3E-20 132.5 11.1 146 184-336 37-194 (263)
77 3cc8_A Putative methyltransfer 99.6 3.5E-15 1.2E-19 128.5 11.5 148 174-338 23-185 (230)
78 2zfu_A Nucleomethylin, cerebra 99.6 7.6E-15 2.6E-19 125.5 12.6 131 175-349 57-190 (215)
79 3g5t_A Trans-aconitate 3-methy 99.6 8E-15 2.7E-19 132.0 12.6 140 185-331 35-197 (299)
80 4hg2_A Methyltransferase type 99.6 3.7E-15 1.3E-19 130.9 10.1 97 186-288 39-139 (257)
81 1ri5_A MRNA capping enzyme; me 99.6 6.2E-15 2.1E-19 132.3 11.1 153 185-339 63-251 (298)
82 3m70_A Tellurite resistance pr 99.6 1.3E-14 4.3E-19 129.8 12.8 139 176-336 112-258 (286)
83 2p8j_A S-adenosylmethionine-de 99.6 3.3E-15 1.1E-19 127.0 7.9 149 184-335 21-180 (209)
84 2aot_A HMT, histamine N-methyl 99.6 8.8E-15 3E-19 131.3 10.8 140 185-335 51-218 (292)
85 4e2x_A TCAB9; kijanose, tetron 99.6 1.2E-14 4.1E-19 136.9 12.2 151 172-339 95-254 (416)
86 3giw_A Protein of unknown func 99.6 2.4E-14 8.2E-19 125.3 11.8 142 185-334 77-243 (277)
87 1fbn_A MJ fibrillarin homologu 99.5 3.2E-14 1.1E-18 123.1 11.8 142 184-350 72-228 (230)
88 1wzn_A SAM-dependent methyltra 99.5 6.4E-14 2.2E-18 122.7 13.9 104 175-283 32-144 (252)
89 2kw5_A SLR1183 protein; struct 99.5 4.3E-14 1.5E-18 119.5 12.4 133 186-338 30-171 (202)
90 2g72_A Phenylethanolamine N-me 99.5 5.3E-15 1.8E-19 132.5 6.8 139 185-338 70-256 (289)
91 3thr_A Glycine N-methyltransfe 99.5 8.5E-15 2.9E-19 131.3 8.2 100 184-286 55-177 (293)
92 3e05_A Precorrin-6Y C5,15-meth 99.5 1.1E-13 3.6E-18 117.4 14.3 124 175-335 31-164 (204)
93 3ofk_A Nodulation protein S; N 99.5 5.8E-15 2E-19 126.3 5.6 100 184-286 49-156 (216)
94 3grz_A L11 mtase, ribosomal pr 99.5 5.5E-14 1.9E-18 119.2 11.0 130 185-349 59-196 (205)
95 2b3t_A Protein methyltransfera 99.5 2E-13 6.7E-18 121.4 14.6 135 185-349 108-275 (276)
96 4dzr_A Protein-(glutamine-N5) 99.5 2.7E-14 9.2E-19 121.6 8.0 136 185-349 29-204 (215)
97 3q87_B N6 adenine specific DNA 99.5 3.3E-13 1.1E-17 111.1 14.2 128 185-348 22-160 (170)
98 3mq2_A 16S rRNA methyltransfer 99.5 9.8E-14 3.3E-18 118.9 11.2 142 184-339 25-185 (218)
99 3uwp_A Histone-lysine N-methyl 99.5 7.1E-14 2.4E-18 128.3 9.5 113 174-292 163-296 (438)
100 3p2e_A 16S rRNA methylase; met 99.5 7.2E-14 2.5E-18 120.4 9.1 146 185-339 23-186 (225)
101 1dus_A MJ0882; hypothetical pr 99.5 2.1E-13 7.3E-18 114.0 11.8 141 174-349 42-193 (194)
102 3hm2_A Precorrin-6Y C5,15-meth 99.5 2E-13 6.9E-18 112.8 10.7 122 176-335 17-150 (178)
103 3fzg_A 16S rRNA methylase; met 99.5 9.8E-14 3.4E-18 114.0 8.2 131 185-340 48-189 (200)
104 3bgv_A MRNA CAP guanine-N7 met 99.5 4.5E-13 1.6E-17 121.3 13.5 151 185-338 33-232 (313)
105 2gs9_A Hypothetical protein TT 99.5 2.4E-13 8.2E-18 115.7 11.0 127 186-329 36-171 (211)
106 2vdw_A Vaccinia virus capping 99.5 3.3E-13 1.1E-17 121.4 11.5 151 186-338 48-246 (302)
107 3orh_A Guanidinoacetate N-meth 99.5 2.4E-14 8.2E-19 124.4 3.9 133 185-335 59-207 (236)
108 1nt2_A Fibrillarin-like PRE-rR 99.4 1.3E-12 4.3E-17 111.4 13.3 137 184-349 55-209 (210)
109 3htx_A HEN1; HEN1, small RNA m 99.4 5.6E-13 1.9E-17 131.1 12.5 101 184-286 719-836 (950)
110 4df3_A Fibrillarin-like rRNA/T 99.4 3.2E-13 1.1E-17 115.9 9.5 142 184-349 75-231 (233)
111 1zx0_A Guanidinoacetate N-meth 99.4 6.6E-14 2.3E-18 121.5 4.7 100 185-286 59-172 (236)
112 1yb2_A Hypothetical protein TA 99.4 2.4E-13 8.3E-18 120.8 8.3 125 175-337 101-236 (275)
113 1af7_A Chemotaxis receptor met 99.4 1.9E-13 6.4E-18 120.8 7.4 96 186-282 105-250 (274)
114 3njr_A Precorrin-6Y methylase; 99.4 2.5E-12 8.7E-17 109.0 14.1 120 176-335 47-177 (204)
115 2ipx_A RRNA 2'-O-methyltransfe 99.4 3.9E-13 1.3E-17 116.4 8.8 142 184-349 75-231 (233)
116 2pxx_A Uncharacterized protein 99.4 3E-13 1E-17 115.2 7.7 100 185-286 41-161 (215)
117 3mti_A RRNA methylase; SAM-dep 99.4 1.1E-12 3.8E-17 109.2 10.5 133 184-339 20-170 (185)
118 3id6_C Fibrillarin-like rRNA/T 99.4 3.8E-12 1.3E-16 109.5 13.8 142 184-349 74-230 (232)
119 2nxc_A L11 mtase, ribosomal pr 99.4 8.8E-13 3E-17 115.7 9.8 128 185-349 119-254 (254)
120 1g8a_A Fibrillarin-like PRE-rR 99.4 4.3E-12 1.5E-16 109.3 14.0 142 184-350 71-227 (227)
121 3kr9_A SAM-dependent methyltra 99.4 3.4E-12 1.2E-16 108.9 12.7 130 185-349 14-157 (225)
122 1yzh_A TRNA (guanine-N(7)-)-me 99.4 2.5E-12 8.7E-17 109.7 11.8 99 185-284 40-156 (214)
123 1l3i_A Precorrin-6Y methyltran 99.4 1.8E-12 6.3E-17 108.0 10.2 118 177-332 26-154 (192)
124 1xdz_A Methyltransferase GIDB; 99.4 7.3E-13 2.5E-17 115.2 8.0 132 185-349 69-218 (240)
125 3eey_A Putative rRNA methylase 99.4 6.7E-13 2.3E-17 111.7 7.4 134 184-338 20-173 (197)
126 3lec_A NADB-rossmann superfami 99.4 5.3E-12 1.8E-16 107.9 12.7 130 185-349 20-163 (230)
127 2h00_A Methyltransferase 10 do 99.4 7.1E-14 2.4E-18 122.7 1.1 144 186-338 65-238 (254)
128 3fpf_A Mtnas, putative unchara 99.4 1.2E-12 4.3E-17 115.7 9.0 95 184-284 120-222 (298)
129 3iv6_A Putative Zn-dependent a 99.4 1E-12 3.5E-17 115.1 8.3 105 173-285 34-149 (261)
130 3evz_A Methyltransferase; NYSG 99.4 3.1E-12 1.1E-16 110.3 11.3 128 184-340 53-208 (230)
131 3mb5_A SAM-dependent methyltra 99.4 2E-12 6.8E-17 113.4 10.2 126 174-337 83-221 (255)
132 3m33_A Uncharacterized protein 99.4 3.7E-13 1.3E-17 116.0 5.4 114 185-338 47-167 (226)
133 3lpm_A Putative methyltransfer 99.4 5.3E-12 1.8E-16 111.0 12.7 135 184-349 46-218 (259)
134 3g89_A Ribosomal RNA small sub 99.4 8.8E-13 3E-17 115.3 7.2 132 185-349 79-228 (249)
135 3bwc_A Spermidine synthase; SA 99.4 1.6E-12 5.6E-17 117.0 9.2 140 185-349 94-257 (304)
136 2ld4_A Anamorsin; methyltransf 99.3 1.7E-12 5.8E-17 107.2 7.7 114 184-337 10-133 (176)
137 2pwy_A TRNA (adenine-N(1)-)-me 99.3 5E-12 1.7E-16 110.9 10.5 126 174-337 86-223 (258)
138 2pjd_A Ribosomal RNA small sub 99.3 1.1E-12 3.9E-17 120.2 6.6 109 174-285 186-304 (343)
139 4dcm_A Ribosomal RNA large sub 99.3 2.5E-12 8.5E-17 119.0 8.7 107 175-284 213-334 (375)
140 1jsx_A Glucose-inhibited divis 99.3 2.9E-12 1E-16 108.6 8.4 126 186-349 65-204 (207)
141 2fca_A TRNA (guanine-N(7)-)-me 99.3 5.1E-12 1.8E-16 107.8 9.9 97 186-284 38-153 (213)
142 3gnl_A Uncharacterized protein 99.3 1.5E-11 5.2E-16 106.0 11.9 130 185-349 20-163 (244)
143 3hp7_A Hemolysin, putative; st 99.3 1.2E-11 4.1E-16 109.6 10.8 145 176-338 76-232 (291)
144 1u2z_A Histone-lysine N-methyl 99.3 8.4E-12 2.9E-16 116.7 10.1 111 174-290 232-365 (433)
145 2y1w_A Histone-arginine methyl 99.3 5E-12 1.7E-16 116.1 7.7 105 175-283 41-154 (348)
146 2yxd_A Probable cobalt-precorr 99.3 3.3E-11 1.1E-15 99.6 11.4 119 176-335 27-154 (183)
147 3b3j_A Histone-arginine methyl 99.3 6.2E-12 2.1E-16 119.9 7.9 106 173-282 147-261 (480)
148 2avn_A Ubiquinone/menaquinone 99.3 3.5E-12 1.2E-16 112.3 5.4 98 186-287 54-155 (260)
149 1o9g_A RRNA methyltransferase; 99.2 1.5E-11 5E-16 107.6 8.9 100 185-285 50-215 (250)
150 2frn_A Hypothetical protein PH 99.2 3.6E-11 1.2E-15 106.9 11.5 120 185-334 124-253 (278)
151 1o54_A SAM-dependent O-methylt 99.2 1.2E-11 4E-16 109.9 8.3 126 174-337 102-238 (277)
152 3dxy_A TRNA (guanine-N(7)-)-me 99.2 5E-12 1.7E-16 108.2 5.6 97 186-284 34-150 (218)
153 3lbf_A Protein-L-isoaspartate 99.2 1.4E-11 4.9E-16 104.6 8.1 99 175-286 68-176 (210)
154 2yxe_A Protein-L-isoaspartate 99.2 1.5E-11 5.1E-16 104.9 7.8 100 175-285 68-178 (215)
155 3duw_A OMT, O-methyltransferas 99.2 2.3E-11 7.8E-16 104.4 9.0 98 185-288 57-171 (223)
156 3p9n_A Possible methyltransfer 99.2 2.9E-11 9.9E-16 101.0 9.4 100 185-287 43-156 (189)
157 3tfw_A Putative O-methyltransf 99.2 3.7E-11 1.3E-15 104.9 10.1 98 184-287 61-173 (248)
158 3opn_A Putative hemolysin; str 99.2 9.5E-12 3.3E-16 107.4 6.2 155 176-349 28-201 (232)
159 1nv8_A HEMK protein; class I a 99.2 2.6E-11 8.8E-16 108.0 8.8 94 186-282 123-247 (284)
160 1ej0_A FTSJ; methyltransferase 99.2 4.8E-11 1.7E-15 97.9 9.9 97 184-285 20-137 (180)
161 3gjy_A Spermidine synthase; AP 99.2 2.1E-11 7.1E-16 109.3 7.9 98 187-285 90-201 (317)
162 2plw_A Ribosomal RNA methyltra 99.2 6.7E-11 2.3E-15 99.6 10.7 102 176-283 13-153 (201)
163 2bm8_A Cephalosporin hydroxyla 99.2 4E-11 1.4E-15 103.9 9.2 94 186-285 81-188 (236)
164 2ozv_A Hypothetical protein AT 99.2 2.1E-11 7.3E-16 107.3 7.5 99 184-283 34-169 (260)
165 3dmg_A Probable ribosomal RNA 99.2 3.8E-11 1.3E-15 111.2 9.4 97 185-284 232-340 (381)
166 3q7e_A Protein arginine N-meth 99.2 2.2E-11 7.4E-16 111.9 7.4 96 185-282 65-171 (349)
167 3r3h_A O-methyltransferase, SA 99.2 2.9E-11 1E-15 105.2 7.8 99 185-289 59-175 (242)
168 3ntv_A MW1564 protein; rossman 99.2 1.7E-11 6E-16 105.9 6.2 97 185-287 70-179 (232)
169 3lcv_B Sisomicin-gentamicin re 99.2 1.6E-11 5.4E-16 105.5 5.7 135 185-340 131-273 (281)
170 1vbf_A 231AA long hypothetical 99.2 3.8E-11 1.3E-15 103.5 8.2 99 174-285 60-166 (231)
171 2fyt_A Protein arginine N-meth 99.2 5.9E-11 2E-15 108.5 9.8 94 184-281 62-168 (340)
172 3u81_A Catechol O-methyltransf 99.2 2.2E-11 7.4E-16 104.5 6.3 98 185-286 57-172 (221)
173 3ckk_A TRNA (guanine-N(7)-)-me 99.2 4.1E-11 1.4E-15 103.7 8.0 98 185-284 45-168 (235)
174 1jg1_A PIMT;, protein-L-isoasp 99.2 3.3E-11 1.1E-15 104.4 7.1 101 173-285 80-190 (235)
175 3r0q_C Probable protein argini 99.2 2.9E-11 9.8E-16 112.1 7.0 102 184-287 61-172 (376)
176 3dr5_A Putative O-methyltransf 99.2 6.2E-11 2.1E-15 101.6 8.4 95 187-287 57-166 (221)
177 1dl5_A Protein-L-isoaspartate 99.2 4.8E-11 1.7E-15 108.1 7.9 100 175-285 66-176 (317)
178 2gpy_A O-methyltransferase; st 99.2 4.1E-11 1.4E-15 103.5 6.8 96 185-286 53-162 (233)
179 1p91_A Ribosomal RNA large sub 99.1 7.3E-11 2.5E-15 104.2 8.5 93 185-287 84-181 (269)
180 3tr6_A O-methyltransferase; ce 99.1 2.8E-11 9.4E-16 103.9 4.8 98 185-288 63-178 (225)
181 3sso_A Methyltransferase; macr 99.1 6.6E-11 2.2E-15 108.4 7.2 96 185-287 215-327 (419)
182 2b25_A Hypothetical protein; s 99.1 3.7E-11 1.3E-15 109.7 5.5 103 174-286 95-221 (336)
183 1i9g_A Hypothetical protein RV 99.1 2E-10 6.9E-15 101.9 10.1 102 174-285 89-204 (280)
184 3adn_A Spermidine synthase; am 99.1 6E-11 2.1E-15 106.0 6.1 99 185-284 82-198 (294)
185 1g6q_1 HnRNP arginine N-methyl 99.1 8.9E-11 3E-15 106.8 6.8 96 185-282 37-143 (328)
186 1ws6_A Methyltransferase; stru 99.1 4.1E-11 1.4E-15 98.0 4.2 95 186-287 41-150 (171)
187 2vdv_E TRNA (guanine-N(7)-)-me 99.1 7.3E-11 2.5E-15 102.9 5.8 94 184-283 47-172 (246)
188 1ixk_A Methyltransferase; open 99.1 2.2E-10 7.5E-15 103.6 9.1 103 184-287 116-249 (315)
189 2esr_A Methyltransferase; stru 99.1 1.2E-10 4.2E-15 96.0 6.5 98 185-287 30-141 (177)
190 2fhp_A Methylase, putative; al 99.1 1.3E-10 4.5E-15 96.5 6.6 97 185-286 43-156 (187)
191 3c3p_A Methyltransferase; NP_9 99.1 5.6E-11 1.9E-15 101.0 4.3 96 186-287 56-163 (210)
192 2hnk_A SAM-dependent O-methylt 99.1 1.5E-10 5.1E-15 100.4 6.5 97 185-287 59-184 (239)
193 3dou_A Ribosomal RNA large sub 99.1 2.6E-10 8.8E-15 95.4 7.7 103 174-284 14-139 (191)
194 3frh_A 16S rRNA methylase; met 99.1 8.5E-10 2.9E-14 94.0 10.7 95 185-284 104-206 (253)
195 2oxt_A Nucleoside-2'-O-methylt 99.1 4.7E-10 1.6E-14 98.7 9.3 96 184-284 72-185 (265)
196 2ift_A Putative methylase HI07 99.0 9.7E-11 3.3E-15 98.9 4.4 98 186-288 53-167 (201)
197 1zq9_A Probable dimethyladenos 99.0 1.9E-10 6.7E-15 102.4 6.4 103 173-281 17-144 (285)
198 1r18_A Protein-L-isoaspartate( 99.0 1.5E-10 5.2E-15 99.5 5.6 92 184-284 82-194 (227)
199 2pbf_A Protein-L-isoaspartate 99.0 4.9E-10 1.7E-14 96.2 8.8 93 184-285 78-194 (227)
200 1sui_A Caffeoyl-COA O-methyltr 99.0 1.7E-10 6E-15 100.6 6.0 97 185-287 78-193 (247)
201 2avd_A Catechol-O-methyltransf 99.0 1.4E-10 4.9E-15 99.7 5.2 97 185-287 68-182 (229)
202 2p41_A Type II methyltransfera 99.0 4.8E-10 1.7E-14 100.6 8.7 95 184-282 80-189 (305)
203 4hc4_A Protein arginine N-meth 99.0 2.6E-10 8.9E-15 104.8 7.1 95 186-282 83-187 (376)
204 2wa2_A Non-structural protein 99.0 4.7E-10 1.6E-14 99.2 8.5 96 184-284 80-193 (276)
205 3gdh_A Trimethylguanosine synt 99.0 1E-11 3.6E-16 107.8 -2.2 136 186-342 78-223 (241)
206 2nyu_A Putative ribosomal RNA 99.0 8.5E-10 2.9E-14 92.3 9.4 96 184-284 20-145 (196)
207 3tma_A Methyltransferase; thum 99.0 8.1E-10 2.8E-14 101.6 9.9 131 173-338 192-339 (354)
208 3bzb_A Uncharacterized protein 99.0 1.4E-09 4.9E-14 96.6 11.1 97 184-283 77-204 (281)
209 4azs_A Methyltransferase WBDD; 99.0 1.9E-10 6.6E-15 112.3 5.6 102 185-289 65-178 (569)
210 2yvl_A TRMI protein, hypotheti 99.0 8E-10 2.7E-14 96.1 9.0 99 175-285 82-191 (248)
211 2fpo_A Methylase YHHF; structu 99.0 3E-10 1E-14 96.0 5.8 97 186-287 54-163 (202)
212 1i1n_A Protein-L-isoaspartate 99.0 7.6E-10 2.6E-14 95.0 7.9 93 184-285 75-183 (226)
213 2i7c_A Spermidine synthase; tr 99.0 2.4E-10 8.3E-15 101.7 4.6 98 185-283 77-191 (283)
214 3c3y_A Pfomt, O-methyltransfer 99.0 3.4E-10 1.2E-14 98.1 5.1 96 185-286 69-183 (237)
215 3a27_A TYW2, uncharacterized p 99.0 4.7E-10 1.6E-14 99.3 5.6 99 184-289 117-224 (272)
216 1iy9_A Spermidine synthase; ro 99.0 2.2E-10 7.4E-15 101.6 3.4 98 185-283 74-188 (275)
217 3cbg_A O-methyltransferase; cy 99.0 2.3E-10 8E-15 98.8 3.4 97 186-288 72-186 (232)
218 1mjf_A Spermidine synthase; sp 99.0 3.9E-10 1.3E-14 100.3 4.7 97 185-283 74-192 (281)
219 2o07_A Spermidine synthase; st 99.0 3.1E-10 1.1E-14 101.9 4.0 99 185-284 94-209 (304)
220 1uir_A Polyamine aminopropyltr 98.9 4.7E-10 1.6E-14 101.3 5.2 99 185-284 76-195 (314)
221 1xj5_A Spermidine synthase 1; 98.9 3.9E-10 1.3E-14 102.5 4.5 98 185-283 119-234 (334)
222 2b2c_A Spermidine synthase; be 98.9 4E-10 1.4E-14 101.6 4.4 98 185-284 107-222 (314)
223 2pt6_A Spermidine synthase; tr 98.9 4.9E-10 1.7E-14 101.5 4.8 97 185-283 115-229 (321)
224 2cmg_A Spermidine synthase; tr 98.9 1.5E-09 5E-14 95.4 7.6 89 185-283 71-170 (262)
225 1inl_A Spermidine synthase; be 98.9 6.4E-10 2.2E-14 99.6 4.0 97 186-283 90-204 (296)
226 2yxl_A PH0851 protein, 450AA l 98.9 4.6E-09 1.6E-13 99.6 9.2 109 177-288 252-393 (450)
227 2xyq_A Putative 2'-O-methyl tr 98.9 4.3E-09 1.5E-13 93.4 8.3 115 184-336 61-195 (290)
228 3k6r_A Putative transferase PH 98.9 4.7E-09 1.6E-13 92.5 8.4 120 184-333 123-252 (278)
229 3ajd_A Putative methyltransfer 98.9 1.4E-09 4.8E-14 96.3 4.6 104 184-288 81-215 (274)
230 1ne2_A Hypothetical protein TA 98.8 3.1E-09 1.1E-13 89.3 5.8 89 184-273 49-139 (200)
231 2ih2_A Modification methylase 98.8 1E-08 3.6E-13 96.3 9.8 104 175-284 30-164 (421)
232 2f8l_A Hypothetical protein LM 98.8 4.9E-09 1.7E-13 95.9 7.0 99 185-284 129-256 (344)
233 2igt_A SAM dependent methyltra 98.8 6.7E-09 2.3E-13 94.3 7.3 94 186-284 153-272 (332)
234 1wy7_A Hypothetical protein PH 98.8 3.7E-08 1.3E-12 83.1 11.4 90 184-274 47-142 (207)
235 2h1r_A Dimethyladenosine trans 98.8 7.4E-09 2.5E-13 92.8 7.4 99 174-278 32-153 (299)
236 1qam_A ERMC' methyltransferase 98.8 1E-08 3.5E-13 89.1 7.8 104 173-281 19-143 (244)
237 1yub_A Ermam, rRNA methyltrans 98.8 3.4E-09 1.2E-13 92.2 4.0 104 174-284 19-145 (245)
238 3b5i_A S-adenosyl-L-methionine 98.8 1E-07 3.4E-12 87.4 13.7 151 186-338 52-298 (374)
239 1sqg_A SUN protein, FMU protei 98.7 2E-08 6.8E-13 94.6 8.9 103 184-287 244-377 (429)
240 3m6w_A RRNA methylase; rRNA me 98.7 5.2E-09 1.8E-13 98.7 4.6 102 184-287 99-232 (464)
241 3tm4_A TRNA (guanine N2-)-meth 98.7 1.4E-08 4.7E-13 93.9 7.3 120 185-338 216-352 (373)
242 2frx_A Hypothetical protein YE 98.7 2.4E-08 8.1E-13 95.1 8.9 102 186-288 117-250 (479)
243 2b78_A Hypothetical protein SM 98.7 5.2E-09 1.8E-13 97.2 3.4 98 185-284 211-331 (385)
244 3m4x_A NOL1/NOP2/SUN family pr 98.7 1.6E-08 5.4E-13 95.4 5.7 103 184-287 103-237 (456)
245 3gru_A Dimethyladenosine trans 98.6 8.5E-08 2.9E-12 85.3 8.3 83 173-260 39-129 (295)
246 3k0b_A Predicted N6-adenine-sp 98.6 7.8E-08 2.7E-12 89.3 7.7 110 173-285 190-351 (393)
247 2yx1_A Hypothetical protein MJ 98.6 4.1E-08 1.4E-12 89.5 5.6 93 185-287 194-294 (336)
248 3c0k_A UPF0064 protein YCCW; P 98.6 4.1E-08 1.4E-12 91.5 5.5 96 186-284 220-339 (396)
249 3ldg_A Putative uncharacterize 98.6 2.4E-07 8.1E-12 85.6 10.4 110 173-285 183-344 (384)
250 2as0_A Hypothetical protein PH 98.6 4.6E-08 1.6E-12 91.2 5.2 98 186-285 217-336 (396)
251 1wxx_A TT1595, hypothetical pr 98.5 5.7E-08 2E-12 90.1 5.2 96 186-284 209-325 (382)
252 4dmg_A Putative uncharacterize 98.5 1.7E-07 5.8E-12 86.9 8.2 97 185-284 213-326 (393)
253 2okc_A Type I restriction enzy 98.5 5.9E-08 2E-12 91.8 5.1 108 174-284 161-307 (445)
254 3ftd_A Dimethyladenosine trans 98.5 3.1E-07 1.1E-11 79.9 9.1 90 174-266 21-116 (249)
255 3ldu_A Putative methylase; str 98.5 1.4E-07 4.7E-12 87.4 7.0 110 173-285 184-345 (385)
256 4gqb_A Protein arginine N-meth 98.5 1.1E-07 3.8E-12 92.5 5.7 128 146-281 322-464 (637)
257 3fut_A Dimethyladenosine trans 98.5 4E-07 1.4E-11 80.0 8.2 89 174-268 37-133 (271)
258 2efj_A 3,7-dimethylxanthine me 98.4 1.5E-06 5.2E-11 79.7 12.1 149 187-337 53-291 (384)
259 1uwv_A 23S rRNA (uracil-5-)-me 98.4 5E-07 1.7E-11 85.1 9.0 97 175-282 277-387 (433)
260 1m6e_X S-adenosyl-L-methionnin 98.4 5.4E-06 1.8E-10 75.4 14.4 149 185-335 50-277 (359)
261 1m6y_A S-adenosyl-methyltransf 98.4 2.7E-07 9.3E-12 82.3 5.6 77 173-251 15-105 (301)
262 2qfm_A Spermine synthase; sper 98.4 2.3E-07 7.7E-12 84.2 4.8 97 185-283 187-313 (364)
263 1qyr_A KSGA, high level kasuga 98.4 2.7E-07 9.2E-12 80.3 5.1 90 173-266 10-111 (252)
264 3v97_A Ribosomal RNA large sub 98.4 3.6E-07 1.2E-11 91.0 6.6 97 186-284 539-657 (703)
265 3tqs_A Ribosomal RNA small sub 98.4 3.2E-07 1.1E-11 79.9 5.0 67 173-243 18-90 (255)
266 3uzu_A Ribosomal RNA small sub 98.3 1.8E-07 6.3E-12 82.6 3.4 69 174-244 32-106 (279)
267 2jjq_A Uncharacterized RNA met 98.3 7.5E-07 2.6E-11 83.5 7.8 90 185-283 289-386 (425)
268 3o4f_A Spermidine synthase; am 98.3 7.9E-07 2.7E-11 78.5 7.2 98 184-283 81-197 (294)
269 3ua3_A Protein arginine N-meth 98.3 5.3E-07 1.8E-11 87.7 6.5 127 146-281 377-531 (745)
270 3evf_A RNA-directed RNA polyme 98.3 1.7E-06 5.7E-11 75.0 8.8 105 175-282 65-182 (277)
271 2qy6_A UPF0209 protein YFCK; s 98.3 1.1E-06 3.7E-11 76.7 6.7 132 185-349 59-246 (257)
272 1rjd_A PPM1P, carboxy methyl t 98.3 1.7E-05 5.8E-10 71.7 14.6 142 185-331 96-281 (334)
273 3bt7_A TRNA (uracil-5-)-methyl 98.2 6.6E-07 2.3E-11 82.5 2.9 87 187-284 214-326 (369)
274 2r6z_A UPF0341 protein in RSP 98.1 2.6E-06 8.9E-11 74.4 6.2 97 184-285 81-217 (258)
275 3gcz_A Polyprotein; flavivirus 98.1 3.1E-06 1.1E-10 73.4 5.7 106 173-282 79-199 (282)
276 3v97_A Ribosomal RNA large sub 98.0 7.2E-06 2.5E-10 81.7 7.9 110 173-285 179-348 (703)
277 2dul_A N(2),N(2)-dimethylguano 98.0 3.1E-06 1.1E-10 78.0 4.3 92 186-284 47-164 (378)
278 2ar0_A M.ecoki, type I restric 97.9 1E-05 3.5E-10 78.1 6.5 107 175-284 160-312 (541)
279 2k4m_A TR8_protein, UPF0146 pr 97.9 1.7E-05 5.7E-10 61.8 6.4 81 185-283 34-120 (153)
280 3axs_A Probable N(2),N(2)-dime 97.9 2.1E-06 7.1E-11 79.3 1.5 93 185-284 51-158 (392)
281 2b9e_A NOL1/NOP2/SUN domain fa 97.9 2E-05 6.8E-10 70.6 7.5 67 184-250 100-180 (309)
282 3s1s_A Restriction endonucleas 97.9 7E-05 2.4E-09 74.2 10.7 99 185-284 320-465 (878)
283 3khk_A Type I restriction-modi 97.8 1.1E-05 3.7E-10 77.9 4.2 108 173-284 234-395 (544)
284 3eld_A Methyltransferase; flav 97.8 8E-05 2.7E-09 65.0 9.1 97 184-282 79-189 (300)
285 2vz8_A Fatty acid synthase; tr 97.8 9.6E-06 3.3E-10 91.1 3.6 143 185-337 1239-1394(2512)
286 3iei_A Leucine carboxyl methyl 97.7 0.0014 4.7E-08 59.0 16.4 144 186-338 90-281 (334)
287 4auk_A Ribosomal RNA large sub 97.7 0.00013 4.5E-09 66.1 9.6 129 184-338 209-341 (375)
288 2oyr_A UPF0341 protein YHIQ; a 97.7 3.9E-05 1.3E-09 66.7 5.1 71 184-256 84-176 (258)
289 3p8z_A Mtase, non-structural p 97.6 0.00021 7.2E-09 60.0 8.9 105 174-282 68-184 (267)
290 3cvo_A Methyltransferase-like 97.5 0.00033 1.1E-08 58.3 8.5 89 185-285 29-154 (202)
291 3ll7_A Putative methyltransfer 97.5 3.2E-05 1.1E-09 71.6 2.4 64 185-250 92-169 (410)
292 3c6k_A Spermine synthase; sper 97.5 6.4E-05 2.2E-09 68.4 4.1 96 185-282 204-329 (381)
293 2heo_A Z-DNA binding protein 1 97.5 6.3E-05 2.2E-09 50.9 2.7 55 32-95 12-66 (67)
294 2px2_A Genome polyprotein [con 97.4 0.00055 1.9E-08 58.4 8.7 104 174-282 63-181 (269)
295 1wg8_A Predicted S-adenosylmet 97.4 0.00017 5.9E-09 62.8 5.1 76 171-250 9-95 (285)
296 3lkz_A Non-structural protein 97.3 0.001 3.5E-08 57.8 9.4 105 174-282 84-202 (321)
297 3lkd_A Type I restriction-modi 97.3 0.00072 2.5E-08 65.1 9.2 98 186-284 221-358 (542)
298 2uyo_A Hypothetical protein ML 97.3 0.00091 3.1E-08 59.7 9.1 147 186-337 102-277 (310)
299 3b73_A PHIH1 repressor-like pr 97.3 0.00019 6.6E-09 53.6 3.8 62 32-103 15-78 (111)
300 1xmk_A Double-stranded RNA-spe 97.2 0.00029 9.8E-09 49.0 3.6 60 32-99 13-73 (79)
301 1y0u_A Arsenical resistance op 97.1 0.00039 1.3E-08 50.6 4.0 62 25-99 26-87 (96)
302 1qgp_A Protein (double strande 97.0 0.00045 1.5E-08 48.0 3.1 58 32-96 16-75 (77)
303 3vyw_A MNMC2; tRNA wobble urid 96.9 0.0027 9.3E-08 56.1 8.4 131 185-349 95-259 (308)
304 1qbj_A Protein (double-strande 96.9 0.00079 2.7E-08 47.1 3.9 60 32-99 12-74 (81)
305 3mq0_A Transcriptional repress 96.8 0.00074 2.5E-08 59.3 4.0 58 33-99 33-90 (275)
306 2wk1_A NOVP; transferase, O-me 96.8 0.0027 9.4E-08 55.6 7.4 93 185-282 105-242 (282)
307 1oyi_A Double-stranded RNA-bin 96.8 0.00086 2.9E-08 46.7 3.2 60 31-99 18-77 (82)
308 3bdd_A Regulatory protein MARR 96.7 0.0048 1.6E-07 47.7 7.6 68 31-102 32-99 (142)
309 3ech_A MEXR, multidrug resista 96.7 0.0036 1.2E-07 48.7 6.8 95 4-102 6-105 (142)
310 3pqk_A Biofilm growth-associat 96.7 0.0017 5.7E-08 47.7 4.4 64 25-96 18-81 (102)
311 2zwa_A Leucine carboxyl methyl 96.7 0.042 1.4E-06 54.7 15.7 146 186-338 107-309 (695)
312 3jth_A Transcription activator 96.7 0.001 3.5E-08 48.4 3.0 64 25-96 18-81 (98)
313 2jt1_A PEFI protein; solution 96.6 0.00098 3.4E-08 46.1 2.6 37 43-82 22-58 (77)
314 2oqg_A Possible transcriptiona 96.6 0.001 3.4E-08 49.9 2.9 63 29-99 20-82 (114)
315 4fzv_A Putative methyltransfer 96.5 0.0042 1.4E-07 56.4 7.0 105 184-289 146-289 (359)
316 1u2w_A CADC repressor, cadmium 96.5 0.0017 5.9E-08 49.4 3.8 66 24-96 36-101 (122)
317 2k02_A Ferrous iron transport 96.5 0.0015 5.3E-08 46.1 3.0 44 35-82 7-50 (87)
318 1xn7_A Hypothetical protein YH 96.5 0.0016 5.6E-08 45.1 3.1 43 35-81 7-49 (78)
319 3r24_A NSP16, 2'-O-methyl tran 96.5 0.0056 1.9E-07 53.2 6.9 91 184-282 107-215 (344)
320 3r4k_A Transcriptional regulat 96.5 0.0011 3.9E-08 57.6 2.6 61 33-101 9-69 (260)
321 4a5n_A Uncharacterized HTH-typ 96.5 0.0045 1.5E-07 47.6 5.6 80 9-102 14-94 (131)
322 3cuo_A Uncharacterized HTH-typ 96.4 0.0018 6.1E-08 47.0 3.1 65 26-97 20-84 (99)
323 2hzt_A Putative HTH-type trans 96.4 0.0031 1.1E-07 46.7 4.5 76 12-101 5-81 (107)
324 1ub9_A Hypothetical protein PH 96.4 0.0012 4.2E-08 48.0 2.2 71 25-99 11-81 (100)
325 3tka_A Ribosomal RNA small sub 96.4 0.0049 1.7E-07 55.0 6.3 68 171-240 44-115 (347)
326 2xrn_A HTH-type transcriptiona 96.4 0.0022 7.4E-08 55.1 3.8 61 33-101 9-69 (241)
327 2jsc_A Transcriptional regulat 96.4 0.0022 7.5E-08 48.5 3.3 53 25-82 16-68 (118)
328 1mkm_A ICLR transcriptional re 96.3 0.0028 9.6E-08 54.7 4.3 58 33-99 11-68 (249)
329 1r1u_A CZRA, repressor protein 96.3 0.002 6.7E-08 47.7 2.8 52 26-82 22-73 (106)
330 1s3j_A YUSO protein; structura 96.3 0.012 4.2E-07 46.2 7.6 67 32-102 39-105 (155)
331 3fm5_A Transcriptional regulat 96.3 0.0063 2.1E-07 47.7 5.8 69 31-102 40-108 (150)
332 2kko_A Possible transcriptiona 96.2 0.001 3.6E-08 49.4 0.9 52 26-82 21-72 (108)
333 1r7j_A Conserved hypothetical 96.2 0.0048 1.6E-07 44.6 4.4 55 35-102 13-67 (95)
334 2o0y_A Transcriptional regulat 96.2 0.003 1E-07 54.8 3.7 58 33-99 26-83 (260)
335 2htj_A P fimbrial regulatory p 96.2 0.0052 1.8E-07 42.9 4.2 44 34-81 4-47 (81)
336 2g7u_A Transcriptional regulat 96.2 0.0037 1.3E-07 54.2 4.1 60 33-102 17-76 (257)
337 2nyx_A Probable transcriptiona 96.1 0.016 5.4E-07 46.5 7.6 69 30-102 45-113 (168)
338 3f6v_A Possible transcriptiona 96.1 0.0031 1.1E-07 49.9 3.2 69 23-99 51-119 (151)
339 3g3z_A NMB1585, transcriptiona 96.1 0.0059 2E-07 47.6 4.8 68 31-102 32-99 (145)
340 3hsr_A HTH-type transcriptiona 96.1 0.0082 2.8E-07 46.5 5.4 68 31-102 37-104 (140)
341 1on2_A Transcriptional regulat 96.1 0.005 1.7E-07 47.9 4.1 50 44-102 21-70 (142)
342 3df8_A Possible HXLR family tr 96.0 0.0048 1.6E-07 46.0 3.6 75 10-102 16-93 (111)
343 3f6o_A Probable transcriptiona 96.0 0.0035 1.2E-07 47.3 2.7 67 24-98 12-78 (118)
344 2y75_A HTH-type transcriptiona 95.9 0.0095 3.2E-07 45.6 5.1 47 44-97 25-71 (129)
345 2hr3_A Probable transcriptiona 95.9 0.022 7.6E-07 44.2 7.3 69 30-102 35-104 (147)
346 2ia2_A Putative transcriptiona 95.9 0.0039 1.3E-07 54.3 2.9 57 33-99 24-80 (265)
347 1z7u_A Hypothetical protein EF 95.9 0.0052 1.8E-07 45.9 3.2 79 10-102 11-90 (112)
348 2qww_A Transcriptional regulat 95.9 0.059 2E-06 42.1 9.7 68 31-102 42-111 (154)
349 3k0l_A Repressor protein; heli 95.8 0.038 1.3E-06 43.8 8.5 68 31-102 47-114 (162)
350 1i4w_A Mitochondrial replicati 95.8 0.01 3.4E-07 53.8 5.4 83 186-268 58-165 (353)
351 2gxg_A 146AA long hypothetical 95.8 0.05 1.7E-06 42.1 8.9 67 31-102 38-104 (146)
352 1r1t_A Transcriptional repress 95.8 0.0065 2.2E-07 46.2 3.5 52 26-82 42-93 (122)
353 3k69_A Putative transcription 95.8 0.016 5.5E-07 46.3 5.9 48 44-98 27-74 (162)
354 3e6m_A MARR family transcripti 95.7 0.025 8.7E-07 44.8 7.1 68 31-102 54-121 (161)
355 2lnb_A Z-DNA-binding protein 1 95.7 0.006 2E-07 41.2 2.7 56 31-95 20-75 (80)
356 1yyv_A Putative transcriptiona 95.7 0.0073 2.5E-07 46.5 3.7 79 10-102 24-103 (131)
357 2fsw_A PG_0823 protein; alpha- 95.7 0.0063 2.2E-07 45.0 3.2 80 9-102 13-93 (107)
358 3oop_A LIN2960 protein; protei 95.7 0.0091 3.1E-07 46.3 4.2 69 30-102 37-105 (143)
359 2wte_A CSA3; antiviral protein 95.7 0.0068 2.3E-07 52.0 3.7 63 31-102 153-215 (244)
360 4hbl_A Transcriptional regulat 95.7 0.013 4.3E-07 46.0 4.9 69 30-102 41-109 (149)
361 3f3x_A Transcriptional regulat 95.6 0.021 7.1E-07 44.3 6.1 68 30-102 37-104 (144)
362 3s2w_A Transcriptional regulat 95.6 0.012 4.2E-07 46.6 4.7 66 33-102 53-118 (159)
363 2f2e_A PA1607; transcription f 95.6 0.012 4E-07 46.2 4.5 55 44-102 36-90 (146)
364 2bv6_A MGRA, HTH-type transcri 95.6 0.026 8.9E-07 43.6 6.5 68 31-102 38-105 (142)
365 3lwf_A LIN1550 protein, putati 95.6 0.012 4.1E-07 46.9 4.4 46 44-96 43-88 (159)
366 2nnn_A Probable transcriptiona 95.5 0.0097 3.3E-07 45.8 3.7 68 31-102 39-106 (140)
367 3ufb_A Type I restriction-modi 95.5 0.045 1.5E-06 52.5 9.0 110 173-284 206-362 (530)
368 3bja_A Transcriptional regulat 95.5 0.013 4.5E-07 45.0 4.4 68 31-102 34-101 (139)
369 2fu4_A Ferric uptake regulatio 95.5 0.0053 1.8E-07 43.0 2.0 49 31-82 18-72 (83)
370 3cdh_A Transcriptional regulat 95.5 0.033 1.1E-06 43.7 6.8 68 31-102 44-111 (155)
371 3t8r_A Staphylococcus aureus C 95.4 0.013 4.6E-07 45.7 4.2 48 44-98 27-74 (143)
372 1tbx_A ORF F-93, hypothetical 95.4 0.012 4.1E-07 42.6 3.8 64 32-102 10-77 (99)
373 3kp7_A Transcriptional regulat 95.4 0.053 1.8E-06 42.3 7.9 66 32-102 40-107 (151)
374 2rdp_A Putative transcriptiona 95.4 0.05 1.7E-06 42.3 7.6 67 32-102 44-110 (150)
375 2zig_A TTHA0409, putative modi 95.4 0.013 4.5E-07 51.8 4.5 50 173-227 225-275 (297)
376 2x4h_A Hypothetical protein SS 95.4 0.014 4.9E-07 45.1 4.2 48 44-101 30-77 (139)
377 3nrv_A Putative transcriptiona 95.3 0.012 4E-07 46.0 3.5 69 30-102 40-108 (148)
378 3r0a_A Putative transcriptiona 95.2 0.0093 3.2E-07 45.3 2.7 49 31-82 27-76 (123)
379 3boq_A Transcriptional regulat 95.2 0.035 1.2E-06 43.8 6.3 69 31-102 48-116 (160)
380 2fa5_A Transcriptional regulat 95.2 0.037 1.3E-06 43.7 6.2 68 31-102 50-117 (162)
381 3bj6_A Transcriptional regulat 95.1 0.098 3.4E-06 40.7 8.6 68 31-102 41-108 (152)
382 3eco_A MEPR; mutlidrug efflux 95.1 0.014 4.8E-07 45.0 3.4 69 31-102 32-101 (139)
383 1ylf_A RRF2 family protein; st 95.1 0.021 7.3E-07 44.9 4.5 60 25-97 15-74 (149)
384 3cjn_A Transcriptional regulat 95.1 0.027 9.1E-07 44.6 5.2 68 31-102 53-120 (162)
385 2fbh_A Transcriptional regulat 95.1 0.024 8E-07 43.9 4.6 66 32-101 39-105 (146)
386 1lj9_A Transcriptional regulat 95.0 0.015 5.2E-07 45.0 3.3 67 32-102 31-97 (144)
387 1jgs_A Multiple antibiotic res 94.9 0.02 6.7E-07 44.0 3.8 67 32-102 36-102 (138)
388 3deu_A Transcriptional regulat 94.9 0.019 6.6E-07 45.9 3.8 69 31-102 54-122 (166)
389 3tgn_A ADC operon repressor AD 94.8 0.023 7.9E-07 44.1 4.0 67 30-101 38-104 (146)
390 2eth_A Transcriptional regulat 94.8 0.023 7.9E-07 44.7 4.0 68 31-102 45-112 (154)
391 3bro_A Transcriptional regulat 94.8 0.03 1E-06 43.1 4.6 69 31-102 35-104 (141)
392 2h09_A Transcriptional regulat 94.8 0.028 9.4E-07 44.4 4.4 55 38-102 48-102 (155)
393 2pg4_A Uncharacterized protein 94.8 0.022 7.4E-07 40.9 3.4 63 35-102 20-83 (95)
394 1xd7_A YWNA; structural genomi 94.7 0.036 1.2E-06 43.3 4.8 46 44-98 23-68 (145)
395 4aik_A Transcriptional regulat 94.7 0.039 1.3E-06 43.4 5.0 68 32-102 33-100 (151)
396 2pex_A Transcriptional regulat 94.7 0.023 7.7E-07 44.6 3.6 68 31-102 48-115 (153)
397 2lkp_A Transcriptional regulat 94.6 0.018 6.1E-07 43.3 2.7 52 26-82 28-79 (119)
398 3hrs_A Metalloregulator SCAR; 94.6 0.034 1.2E-06 46.6 4.7 50 44-102 19-68 (214)
399 3bpv_A Transcriptional regulat 94.6 0.016 5.6E-07 44.4 2.5 68 31-102 30-97 (138)
400 1z91_A Organic hydroperoxide r 94.6 0.031 1.1E-06 43.3 4.1 69 31-103 41-109 (147)
401 3jw4_A Transcriptional regulat 94.5 0.056 1.9E-06 42.0 5.6 68 32-102 43-111 (148)
402 2qvo_A Uncharacterized protein 94.4 0.025 8.4E-07 40.7 3.0 49 45-102 30-81 (95)
403 2zkz_A Transcriptional repress 94.4 0.02 6.9E-07 41.5 2.5 53 25-82 22-74 (99)
404 1sfx_A Conserved hypothetical 94.3 0.022 7.5E-07 41.6 2.5 48 31-82 21-68 (109)
405 2a61_A Transcriptional regulat 94.3 0.026 8.8E-07 43.7 3.0 68 31-102 34-101 (145)
406 1sfu_A 34L protein; protein/Z- 94.2 0.062 2.1E-06 36.4 4.3 52 36-95 21-72 (75)
407 1bja_A Transcription regulator 94.0 0.054 1.8E-06 38.8 3.9 61 32-103 18-79 (95)
408 3u2r_A Regulatory protein MARR 94.0 0.075 2.6E-06 42.3 5.3 66 31-102 47-116 (168)
409 2fbk_A Transcriptional regulat 94.0 0.066 2.2E-06 43.3 5.0 69 31-102 70-140 (181)
410 2fbi_A Probable transcriptiona 93.9 0.017 5.7E-07 44.6 1.3 68 31-102 37-104 (142)
411 2frh_A SARA, staphylococcal ac 93.9 0.029 9.8E-07 42.7 2.5 68 32-102 39-107 (127)
412 2p4w_A Transcriptional regulat 93.8 0.048 1.6E-06 45.2 3.9 70 24-98 9-80 (202)
413 3i71_A Ethanolamine utilizatio 93.7 0.11 3.9E-06 32.7 4.5 43 44-96 17-59 (68)
414 2o03_A Probable zinc uptake re 93.7 0.05 1.7E-06 41.7 3.6 52 29-83 10-66 (131)
415 2cfx_A HTH-type transcriptiona 93.7 0.051 1.8E-06 42.3 3.7 47 32-82 7-53 (144)
416 1p6r_A Penicillinase repressor 93.6 0.024 8.3E-07 39.4 1.5 48 31-82 10-61 (82)
417 2xvc_A ESCRT-III, SSO0910; cel 93.6 0.038 1.3E-06 34.9 2.2 47 32-81 12-58 (59)
418 3nqo_A MARR-family transcripti 93.5 0.1 3.4E-06 42.6 5.4 71 29-102 40-111 (189)
419 2w25_A Probable transcriptiona 93.5 0.055 1.9E-06 42.4 3.6 47 32-82 9-55 (150)
420 2k4b_A Transcriptional regulat 93.5 0.027 9.3E-07 40.9 1.6 51 31-82 36-87 (99)
421 2qlz_A Transcription factor PF 93.4 0.022 7.5E-07 48.3 1.2 71 24-99 6-79 (232)
422 1uly_A Hypothetical protein PH 93.2 0.073 2.5E-06 43.7 4.0 52 25-81 15-66 (192)
423 2pn6_A ST1022, 150AA long hypo 93.1 0.051 1.7E-06 42.6 2.9 48 31-82 4-51 (150)
424 2p5v_A Transcriptional regulat 93.1 0.068 2.3E-06 42.5 3.6 47 32-82 12-58 (162)
425 1q1h_A TFE, transcription fact 93.1 0.032 1.1E-06 41.2 1.6 47 32-81 20-66 (110)
426 2dk5_A DNA-directed RNA polyme 92.8 0.13 4.3E-06 36.6 4.3 47 33-82 23-70 (91)
427 1v4r_A Transcriptional repress 92.8 0.15 5E-06 37.0 4.8 52 27-82 16-69 (102)
428 1okr_A MECI, methicillin resis 92.7 0.026 9E-07 42.5 0.6 46 33-82 13-62 (123)
429 2ia0_A Putative HTH-type trans 92.7 0.085 2.9E-06 42.4 3.6 48 31-82 18-65 (171)
430 2d1h_A ST1889, 109AA long hypo 92.6 0.068 2.3E-06 38.9 2.8 36 44-82 35-70 (109)
431 2dbb_A Putative HTH-type trans 92.5 0.077 2.6E-06 41.6 3.1 48 31-82 10-57 (151)
432 1j5y_A Transcriptional regulat 92.4 0.084 2.9E-06 43.1 3.4 58 30-97 21-79 (187)
433 2obp_A Putative DNA-binding pr 92.4 0.15 5.2E-06 36.6 4.2 53 44-101 35-87 (96)
434 2fe3_A Peroxide operon regulat 92.4 0.09 3.1E-06 41.0 3.4 52 29-83 21-77 (145)
435 2cg4_A Regulatory protein ASNC 92.3 0.075 2.6E-06 41.7 2.9 47 32-82 10-56 (152)
436 2fxa_A Protease production reg 92.3 0.057 1.9E-06 44.9 2.2 68 31-102 49-116 (207)
437 3i4p_A Transcriptional regulat 92.3 0.078 2.7E-06 42.2 2.9 48 31-82 4-51 (162)
438 3u1d_A Uncharacterized protein 92.2 0.15 5E-06 39.9 4.3 69 31-102 30-105 (151)
439 4b8x_A SCO5413, possible MARR- 92.2 0.063 2.2E-06 41.9 2.3 67 33-102 38-105 (147)
440 2esh_A Conserved hypothetical 92.1 0.25 8.5E-06 36.9 5.5 71 27-102 10-90 (118)
441 2cyy_A Putative HTH-type trans 92.0 0.066 2.3E-06 42.0 2.2 47 32-82 9-55 (151)
442 2e1c_A Putative HTH-type trans 91.9 0.09 3.1E-06 42.3 2.9 48 31-82 28-75 (171)
443 3k2z_A LEXA repressor; winged 91.8 0.097 3.3E-06 43.1 3.1 36 44-82 23-58 (196)
444 1ku9_A Hypothetical protein MJ 91.8 0.084 2.9E-06 40.9 2.6 46 34-82 30-75 (152)
445 1i1g_A Transcriptional regulat 91.8 0.078 2.7E-06 40.9 2.3 47 32-82 6-52 (141)
446 2xig_A Ferric uptake regulatio 91.7 0.14 4.9E-06 40.1 3.9 51 29-82 26-81 (150)
447 2oo3_A Protein involved in cat 91.1 0.31 1.1E-05 42.3 5.5 97 187-288 92-202 (283)
448 1fx7_A Iron-dependent represso 91.0 0.12 4.2E-06 43.6 3.0 47 47-102 26-72 (230)
449 3mwm_A ZUR, putative metal upt 90.8 0.15 5.2E-06 39.4 3.1 51 29-82 13-68 (139)
450 1g60_A Adenine-specific methyl 90.8 0.28 9.6E-06 42.2 5.1 49 173-226 202-251 (260)
451 4fx0_A Probable transcriptiona 90.7 0.13 4.6E-06 40.1 2.7 66 32-101 35-104 (148)
452 1mzb_A Ferric uptake regulatio 90.6 0.12 4.1E-06 39.8 2.3 51 29-82 17-73 (136)
453 2qlz_A Transcription factor PF 90.6 0.65 2.2E-05 39.2 7.0 53 33-96 168-220 (232)
454 4g6q_A Putative uncharacterize 90.5 0.081 2.8E-06 43.0 1.3 73 24-101 17-92 (182)
455 2g9w_A Conserved hypothetical 90.4 0.15 5E-06 39.3 2.7 49 31-82 10-62 (138)
456 3pvc_A TRNA 5-methylaminomethy 90.3 0.12 4.3E-06 51.2 2.8 120 185-337 57-232 (689)
457 1p4x_A Staphylococcal accessor 90.0 0.17 5.9E-06 43.4 3.0 69 31-102 159-228 (250)
458 3g7u_A Cytosine-specific methy 89.9 1.2 4.2E-05 40.5 8.8 118 188-332 3-145 (376)
459 2vn2_A DNAD, chromosome replic 89.6 0.24 8.3E-06 37.6 3.3 35 45-82 51-85 (128)
460 1g55_A DNA cytosine methyltran 89.6 0.98 3.4E-05 40.5 7.9 125 187-334 2-145 (343)
461 3cta_A Riboflavin kinase; stru 89.6 0.2 6.9E-06 42.3 3.1 53 44-102 26-78 (230)
462 4esf_A PADR-like transcription 89.3 0.48 1.6E-05 35.3 4.7 71 27-102 8-86 (117)
463 3elk_A Putative transcriptiona 89.3 0.31 1.1E-05 36.4 3.6 73 25-102 9-89 (117)
464 2o0m_A Transcriptional regulat 89.1 0.074 2.5E-06 48.0 0.0 62 31-103 21-82 (345)
465 1sd4_A Penicillinase repressor 89.1 0.13 4.5E-06 38.7 1.4 51 31-82 11-62 (126)
466 2pjp_A Selenocysteine-specific 88.7 0.32 1.1E-05 36.5 3.4 53 32-95 9-61 (121)
467 2g1u_A Hypothetical protein TM 88.6 6.9 0.00024 30.1 11.4 91 185-282 17-116 (155)
468 3f8b_A Transcriptional regulat 88.6 0.63 2.2E-05 34.6 4.9 73 25-102 7-89 (116)
469 2c7p_A Modification methylase 88.3 1.6 5.4E-05 38.9 8.2 120 187-335 11-150 (327)
470 2qq9_A Diphtheria toxin repres 88.3 0.28 9.7E-06 41.2 3.1 49 45-102 24-72 (226)
471 1cf7_A Protein (transcription 88.3 0.29 9.8E-06 33.4 2.5 37 44-82 29-65 (76)
472 2w57_A Ferric uptake regulatio 88.1 0.18 6.2E-06 39.5 1.7 51 29-82 16-72 (150)
473 3tos_A CALS11; methyltransfera 87.9 0.58 2E-05 40.1 4.8 92 186-282 69-215 (257)
474 2b0l_A GTP-sensing transcripti 87.9 0.34 1.2E-05 35.2 2.9 45 34-82 32-77 (102)
475 3ggo_A Prephenate dehydrogenas 87.8 1.8 6E-05 38.3 8.1 89 187-281 33-125 (314)
476 1xma_A Predicted transcription 87.7 0.25 8.7E-06 38.4 2.3 71 27-102 38-118 (145)
477 2p8t_A Hypothetical protein PH 87.2 0.52 1.8E-05 38.6 3.9 49 44-102 29-77 (200)
478 1bia_A BIRA bifunctional prote 86.7 0.46 1.6E-05 42.3 3.7 56 33-97 8-63 (321)
479 3tqn_A Transcriptional regulat 86.7 0.53 1.8E-05 34.8 3.5 36 44-82 31-67 (113)
480 3qv2_A 5-cytosine DNA methyltr 86.6 1.7 5.7E-05 38.8 7.3 124 185-335 8-157 (327)
481 3l7w_A Putative uncharacterize 86.4 0.32 1.1E-05 35.7 2.1 68 30-102 9-81 (108)
482 1yg2_A Gene activator APHA; vi 86.0 0.68 2.3E-05 37.3 4.1 63 32-99 4-76 (179)
483 2ek5_A Predicted transcription 86.0 0.93 3.2E-05 34.4 4.6 50 26-82 12-62 (129)
484 3fwz_A Inner membrane protein 86.0 3.1 0.00011 31.6 7.8 87 187-282 7-103 (140)
485 3ps9_A TRNA 5-methylaminomethy 86.0 1.4 4.8E-05 43.4 7.1 121 186-339 66-242 (676)
486 3maj_A DNA processing chain A; 85.5 0.45 1.6E-05 43.2 3.0 52 32-94 330-381 (382)
487 1jhg_A Trp operon repressor; c 85.2 0.67 2.3E-05 33.5 3.2 41 28-73 43-83 (101)
488 2py6_A Methyltransferase FKBM; 85.1 0.77 2.6E-05 42.3 4.4 57 184-240 224-293 (409)
489 1hsj_A Fusion protein consisti 84.9 0.46 1.6E-05 44.7 2.9 64 32-101 406-473 (487)
490 3rkx_A Biotin-[acetyl-COA-carb 84.9 0.5 1.7E-05 42.1 2.9 58 32-97 5-63 (323)
491 1p4x_A Staphylococcal accessor 84.6 0.75 2.6E-05 39.3 3.8 65 32-102 36-104 (250)
492 1zkd_A DUF185; NESG, RPR58, st 83.5 2.1 7.3E-05 38.9 6.5 35 184-218 78-119 (387)
493 3hhh_A Transcriptional regulat 83.2 1.2 4E-05 33.1 3.9 73 25-102 8-88 (116)
494 3by6_A Predicted transcription 82.8 0.97 3.3E-05 34.1 3.4 50 26-82 19-69 (126)
495 3b1f_A Putative prephenate deh 82.7 5.1 0.00018 34.5 8.6 88 188-281 7-98 (290)
496 3eyy_A Putative iron uptake re 82.6 0.46 1.6E-05 36.9 1.5 53 29-82 18-72 (145)
497 2vxz_A Pyrsv_GP04; viral prote 82.5 0.74 2.5E-05 35.4 2.5 45 33-82 14-58 (165)
498 1z6r_A MLC protein; transcript 82.5 0.77 2.6E-05 42.2 3.3 51 28-82 14-64 (406)
499 2hoe_A N-acetylglucosamine kin 82.2 0.53 1.8E-05 42.9 2.0 71 24-99 14-87 (380)
500 1pqw_A Polyketide synthase; ro 81.9 2.6 9E-05 34.0 6.1 88 184-285 36-138 (198)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.6e-57 Score=418.75 Aligned_cols=334 Identities=24% Similarity=0.383 Sum_probs=297.8
Q ss_pred CcchHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee
Q 018775 1 MEVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
|.++++ ++...|++++.||+.+++|++|+++||||.|.+.++|+|++|||+++|+ ++..++|||++|++.|++++
T Consensus 1 M~~~e~--~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~ 75 (353)
T 4a6d_A 1 MGSSED--QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKV 75 (353)
T ss_dssp CCTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE
T ss_pred CCChhH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEE
Confidence 566554 7888999999999999999999999999999875579999999999999 89999999999999999987
Q ss_pred cccCCCCCCCeEecChhch-hhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcC---CChhhhhccCcc
Q 018775 81 HQSSDGGDETLYKMTHISK-WLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHG---CEIWDFASQSPQ 156 (350)
Q Consensus 81 ~~~~~~~~~~~~~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g---~~~~~~~~~~~~ 156 (350)
...++ +++|++|+.+. ++..+++.++..++.+.. ...++.|.+|.++++++.+++...+| .++|+++.++++
T Consensus 76 ~~~~~---~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (353)
T 4a6d_A 76 ETRGG---KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEG 151 (353)
T ss_dssp EEETT---EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHH
T ss_pred eccCc---cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHH
Confidence 54210 35799999887 677778888888887763 45788999999999999888888777 368999999999
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC------CCC
Q 018775 157 FNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------CEG 230 (350)
Q Consensus 157 ~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ 230 (350)
....|.++|..........+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|
T Consensus 152 ~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~r 229 (353)
T 4a6d_A 152 ERLQFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQ 229 (353)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCc
Confidence 9999999999988888888999998 78889999999999999999999999999999999999887653 589
Q ss_pred eEEEeccCCC-CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh
Q 018775 231 IFHVGGDMFD-AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH 309 (350)
Q Consensus 231 i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (350)
|+++.+|+++ +.|++|+|++.++||+|+|+++.++|++++++|+ |||+|+|+|.+.++....+ .....+|+.|+..
T Consensus 230 v~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~~~~~~~~~--~~~~~~dl~ml~~ 306 (353)
T 4a6d_A 230 IDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESLLDEDRRGP--LLTQLYSLNMLVQ 306 (353)
T ss_dssp EEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECCCCTTSCCC--HHHHHHHHHHHHS
T ss_pred eeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEeeeCCCCCCC--HHHHHHHHHHHHh
Confidence 9999999998 5677999999999999999999999999999999 9999999999998765442 2446789999988
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++ |++||.+||+++|+++||+.+++++.++.+++|+|+|
T Consensus 307 ~~-g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TE-GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SS-CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CC-CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 87 9999999999999999999999999999999999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.2e-53 Score=393.88 Aligned_cols=344 Identities=35% Similarity=0.630 Sum_probs=298.0
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCC-CCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceee
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHG-SPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~-~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
..+..+++..+++++.|++.+++|++|+++||||.|.+.+ +|+|++|||+++|+ +|..+..++||||+|++.|+|++
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 4567889999999999999999999999999999998753 59999999999997 44334499999999999999999
Q ss_pred cccCC-CC-CCCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcch
Q 018775 81 HQSSD-GG-DETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQF 157 (350)
Q Consensus 81 ~~~~~-~~-~~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 157 (350)
+..++ .+ .+++|++|+.+++|..++ +.++++++.+..++.+++.|.+|.++++++.+|++..+|.++|+|+.++++.
T Consensus 94 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~ 173 (364)
T 3p9c_A 94 LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRF 173 (364)
T ss_dssp EEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHH
T ss_pred eccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHH
Confidence 72100 00 026899999999887654 5689988887666678899999999999998999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEecc
Q 018775 158 NNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGD 237 (350)
Q Consensus 158 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d 237 (350)
.+.|+++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++..+|+++.+|
T Consensus 174 ~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 174 NRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 999999999888877788888886 3567899999999999999999999999999999999999999988899999999
Q ss_pred CCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHhhhcCCcccC
Q 018775 238 MFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 238 ~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 316 (350)
+++++|..|+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++...... ......+++.|+....+++.|
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 331 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALP-AHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccC
Confidence 9997776799999999999999999999999999999 99999999999877544311 112245788887543338999
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.++|.++|+++||+.++++++++..++|+++|
T Consensus 332 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 332 YEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp BHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=5.1e-52 Score=386.45 Aligned_cols=343 Identities=37% Similarity=0.669 Sum_probs=295.3
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhC---CCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeec
Q 018775 6 ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSH---GSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 6 ~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~---~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+..+.+..+++++.|++.+++|++|+++||||.|.+. ++|+|++|||+++| .+|.++..++||||+|++.|+|++.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5778899999999999999999999999999999873 24799999999998 4333345999999999999999996
Q ss_pred ccCC-CCC-CCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchH
Q 018775 82 QSSD-GGD-ETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFN 158 (350)
Q Consensus 82 ~~~~-~~~-~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (350)
.... .+. +++|++|+.++.|..++ +.++++++.+..++.+++.|.+|.++++++.+|++..+|.++|+|+.++++..
T Consensus 97 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~ 176 (368)
T 3reo_A 97 LRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRIN 176 (368)
T ss_dssp EEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHH
T ss_pred cccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHH
Confidence 2000 000 16899999999777553 67899888877666788899999999999989999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccC
Q 018775 159 NLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDM 238 (350)
Q Consensus 159 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~ 238 (350)
+.|.++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++..+|+++.+|+
T Consensus 177 ~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~ 255 (368)
T 3reo_A 177 KVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDM 255 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCT
T ss_pred HHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCC
Confidence 99999999888877788888776 25678999999999999999999999999999999999999998888999999999
Q ss_pred CCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc-ccccchhhhhhHhhhcCCcccCC
Q 018775 239 FDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHTTGGKERT 317 (350)
Q Consensus 239 ~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s 317 (350)
++++|..|+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++....+ .......+++.|+....+++.|+
T Consensus 256 ~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt 334 (368)
T 3reo_A 256 FDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT 334 (368)
T ss_dssp TTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred CCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence 997776799999999999999999999999999999 9999999999987754432 11123467787876543389999
Q ss_pred HHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 318 EQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 318 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
.++|.++|+++||+.+++++.++..++|+++|.
T Consensus 335 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 335 EKEFQALAMASGFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence 999999999999999999999999999999984
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9.7e-52 Score=382.26 Aligned_cols=326 Identities=25% Similarity=0.434 Sum_probs=292.8
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCC
Q 018775 6 ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSD 85 (350)
Q Consensus 6 ~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 85 (350)
...++...+++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|+|++ +
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c---
Confidence 456788899999999999999999999999999986 79999999999999 89999999999999999999 4
Q ss_pred CCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHH
Q 018775 86 GGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAM 165 (350)
Q Consensus 86 ~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 165 (350)
+++|++|+.+..+.++++.++..++.+..+...++.|.+|+++++++.++++..+|.++|+++.++++....|.+.|
T Consensus 89 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 165 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGM 165 (348)
T ss_dssp ---TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHH
Confidence 58999999999888777778888887765665789999999999999888998899999999999999999999999
Q ss_pred hhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-----CCCeEEEeccCCC
Q 018775 166 ACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
..........+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+++++...+. .++|+++.+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 166 ETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 9988888888999998 78899999999999999999999999999999999877763321 5689999999998
Q ss_pred CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 241 AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 241 ~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
++|+||+|++.++||+|+++++.++|++++++|+ |||+|+|.|...++.... .....+++.++...+ ++.++.++
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~~~~~~---~~~~~~d~~~~~~~~-~~~~t~~e 318 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAVVPEGNDA---HQSKEMDFMMLAART-GQERTAAE 318 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECCBCSSSSC---CHHHHHHHHHHHTTS-CCCCBHHH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCc---chhhhcChhhhhcCC-CcCCCHHH
Confidence 7779999999999999999999999999999999 999999999988776432 234567788877666 89999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
|.++|+++||+++++++.++..++|+++|.
T Consensus 319 ~~~ll~~aGf~~~~~~~~~~~~~vie~~pa 348 (348)
T 3lst_A 319 LEPLFTAAGLRLDRVVGTSSVMSIAVGVPA 348 (348)
T ss_dssp HHHHHHHTTEEEEEEEECSSSCEEEEEEEC
T ss_pred HHHHHHHCCCceEEEEECCCCcEEEEEEeC
Confidence 999999999999999997788999999984
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=9e-51 Score=378.48 Aligned_cols=324 Identities=26% Similarity=0.487 Sum_probs=293.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 8 LRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 8 ~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
.....++++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~----- 105 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG----- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-----
Confidence 3667889999999999999999999999999986 79999999999999 8999999999999999999976
Q ss_pred CCCe-EecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHh
Q 018775 88 DETL-YKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMA 166 (350)
Q Consensus 88 ~~~~-~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 166 (350)
+++ |.+|+.++.|.++++.++..++.+..++..++.|.+|.++++++.++|...+|.++|+|+.++++....|.+.|.
T Consensus 106 -~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 184 (369)
T 3gwz_A 106 -HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMG 184 (369)
T ss_dssp -STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred -CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 578 999999998887777778888887666556789999999999999889988999999999999999999999999
Q ss_pred hhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCC
Q 018775 167 CTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMF 239 (350)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~ 239 (350)
.........+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++|+++.+|++
T Consensus 185 ~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 262 (369)
T 3gwz_A 185 SVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF 262 (369)
T ss_dssp HHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence 888887888999888 77889999999999999999999999999999999888887764 478999999999
Q ss_pred CCCC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 240 DAIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 240 ~~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+++| .||+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++.... . ...+++.|+...+ ++.++.
T Consensus 263 ~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~---~-~~~~d~~~~~~~~-g~~~t~ 336 (369)
T 3gwz_A 263 ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNLIDERPAA---S-TLFVDLLLLVLVG-GAERSE 336 (369)
T ss_dssp TCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEBCCSSCCH---H-HHHHHHHHHHHHS-CCCBCH
T ss_pred CCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCC---c-hhHhhHHHHhhcC-CccCCH
Confidence 8777 6999999999999999999999999999999 999999999998776432 1 4567888877766 899999
Q ss_pred HHHHHHHHhcCCceeEEEE-cCCceeEEEEeeC
Q 018775 319 QEWMKLLEQGGFHRCKIIS-MPALYSIIEAYPQ 350 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~~ 350 (350)
++|.++|+++||+++++++ .++..++|+++|.
T Consensus 337 ~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 337 SEFAALLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp HHHHHHHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 9999999999999999999 5788999999983
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=8.3e-51 Score=377.50 Aligned_cols=342 Identities=38% Similarity=0.680 Sum_probs=296.6
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec--
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH-- 81 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~-- 81 (350)
+++++++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++|||++|++.|+|.+.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 467889999999999999999999999999999999873349999999999999766788999999999999999987
Q ss_pred ---ccCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcC--chhhhhhcCCChhhhhccCcc
Q 018775 82 ---QSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEG--GIAFKKAHGCEIWDFASQSPQ 156 (350)
Q Consensus 82 ---~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~~~~g~~~~~~~~~~~~ 156 (350)
+.++ ..+++|++|+.+++|.++++.++++++.+..++..++.|.+|+++++++ .++|+..+|.++|+++.++|+
T Consensus 84 ~~~~~~g-~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~ 162 (358)
T 1zg3_A 84 KGKEGDE-EEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE 162 (358)
T ss_dssp CCSSSSC-CCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred cccccCC-CCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence 2000 0026899999999998888778999988876666788999999999998 688888889999999999999
Q ss_pred hHH--HHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEE
Q 018775 157 FNN--LFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHV 234 (350)
Q Consensus 157 ~~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~ 234 (350)
... .|+..|........ .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+++++
T Consensus 163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 241 (358)
T 1zg3_A 163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 241 (358)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEE
T ss_pred hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEE
Confidence 999 99999988777665 777777212567789999999999999999999999999999999999998876679999
Q ss_pred eccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCC---CceEEEEeeeecCCCCCc-ccccchhhhhhHhhhc
Q 018775 235 GGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDK---SGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHT 310 (350)
Q Consensus 235 ~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~p---gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~ 310 (350)
.+|+++++|.||+|++.++||+|+++++.++|++++++|+ | ||+|+|.|...++....+ .......+++.|+...
T Consensus 242 ~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 242 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred eCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 9999998778999999999999999999999999999999 9 999999999987654321 0113456777777655
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+ ++.++.++|.++|+++||+++++++.++..++|+++|
T Consensus 321 ~-g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 L-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp S-CCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred C-CCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 5 8899999999999999999999999988899999987
No 7
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1e-50 Score=376.04 Aligned_cols=337 Identities=37% Similarity=0.691 Sum_probs=295.6
Q ss_pred chHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec-
Q 018775 3 VHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH- 81 (350)
Q Consensus 3 ~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~- 81 (350)
.++++.++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++|||++|++.|+|++.
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~ 88 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT 88 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec
Confidence 4568899999999999999999999999999999999864359999999999999665688999999999999999998
Q ss_pred -ccCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHh-cCchhhhhhcCCChhhhhccCcchHH
Q 018775 82 -QSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVK-EGGIAFKKAHGCEIWDFASQSPQFNN 159 (350)
Q Consensus 82 -~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (350)
+ +++|++|+.+.+|.++++.++++++.+..++..++.|.+|+++++ ++.++++..+|.++|+++.++++...
T Consensus 89 ~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 162 (352)
T 1fp2_A 89 KE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNT 162 (352)
T ss_dssp SS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred CC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHH
Confidence 3 489999999999988887789999887766667889999999999 78888988889999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCC
Q 018775 160 LFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMF 239 (350)
Q Consensus 160 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~ 239 (350)
.|...|.......... ++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++..+++++.+|++
T Consensus 163 ~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 241 (352)
T 1fp2_A 163 SFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF 241 (352)
T ss_dssp HHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred HHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecccc
Confidence 9999999877766666 777721266789999999999999999999999999999999999999987667999999999
Q ss_pred CCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCC---CceEEEEeeeecCCCCCc-ccccchhhhhhHhhhcCCccc
Q 018775 240 DAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDK---SGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 240 ~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~p---gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+++|+||+|++.++||||+++++.++|++++++|+ | ||+|+|.|...++....+ .......+++.|+. .+ ++.
T Consensus 242 ~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~-g~~ 318 (352)
T 1fp2_A 242 TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LN-GKE 318 (352)
T ss_dssp TCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GT-CCC
T ss_pred CCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-cc-CCC
Confidence 88778999999999999999999999999999999 9 999999999987654321 01123456776766 55 788
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++|.++|+++||+++++++.++..++|+++|
T Consensus 319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999999888889999987
No 8
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=5.8e-51 Score=374.86 Aligned_cols=319 Identities=25% Similarity=0.392 Sum_probs=283.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDE 89 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~ 89 (350)
+...+++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|++.+++ +
T Consensus 5 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~ 73 (332)
T 3i53_A 5 AAHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------Q 73 (332)
T ss_dssp CCSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------T
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------C
Confidence 34568899999999999999999999999986 79999999999999 8999999999999999999986 5
Q ss_pred CeEecChhchhhhcCCCCChHHHHHHhcCchhh-hhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 90 TLYKMTHISKWLLHDSELSLAPMILVENNQWLL-EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 90 ~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++|.+|+.++.+..+++.++..++.+..+...+ +.|.+|+++++++.++|...+|.++|+++.++++....|...|...
T Consensus 74 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 153 (332)
T 3i53_A 74 GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH 153 (332)
T ss_dssp SBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 899999999988777777788888765433345 7899999999999988988899899999999999999999999988
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .++|+++.+|++++
T Consensus 154 ~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 154 LELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 7766677777777 67789999999999999999999999999999999988887764 47899999999987
Q ss_pred CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 ~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
+| +||+|++.++||+|+++++.++|++++++|+ |||+|+|.|...++. . ....+++.|+...+ ++.++.++
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~-~-----~~~~~d~~~~~~~~-~~~~t~~e 303 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAVAGDE-H-----AGTGMDLRMLTYFG-GKERSLAE 303 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECCCC---------CCHHHHHHHHHHHS-CCCCCHHH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeecCCCC-C-----ccHHHHHHHHhhCC-CCCCCHHH
Confidence 77 6999999999999999999999999999999 999999999988775 2 12467888877766 89999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
|.++|+++||+++++++.++ .++|+++|.
T Consensus 304 ~~~ll~~aGf~~~~~~~~~~-~~vie~r~~ 332 (332)
T 3i53_A 304 LGELAAQAGLAVRAAHPISY-VSIVEMTAL 332 (332)
T ss_dssp HHHHHHHTTEEEEEEEECSS-SEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEECCC-cEEEEEeeC
Confidence 99999999999999999988 999999974
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-49 Score=364.56 Aligned_cols=319 Identities=27% Similarity=0.445 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
.+...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++.+.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 677899999999999999999999999999976 79999999999999 8999999999999999999986
Q ss_pred CCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 89 ETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 89 ~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++.|++|+.+..+. +++.++..++.+..+... +.|.+|+++++++.++++..+|.++|+++.++++....|...| ..
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~ 152 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KA 152 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GG
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HH
Confidence 58999999999888 777788888887765544 8999999999999889988889999999999999999999999 87
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++|+++.+|++++
T Consensus 153 ~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 229 (334)
T 2ip2_A 153 SNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229 (334)
T ss_dssp GHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC
T ss_pred HHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Confidence 7777788888887 666 9999999999999999999999999999999888877764 46899999999987
Q ss_pred CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 ~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
+|. ||+|++.+++|+|+++++..+|++++++|+ |||+++|.|...++.... .....+++.|+...+ ++.++.++
T Consensus 230 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~t~~e 304 (334)
T 2ip2_A 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERTISASEPS---PMSVLWDVHLFMACA-GRHRTTEE 304 (334)
T ss_dssp CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSSCC---HHHHHHHHHHHHHHS-CCCCBHHH
T ss_pred CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCc---chhHHhhhHhHhhCC-CcCCCHHH
Confidence 665 999999999999999999999999999999 999999999988765432 234567777776666 88999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
|.++++++||+++++++.++..++|+++|
T Consensus 305 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 305 VVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999988899999997
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.5e-49 Score=369.28 Aligned_cols=340 Identities=31% Similarity=0.583 Sum_probs=278.9
Q ss_pred hHHhhhHHHHHH--HHHHhHHHHHHHHHHHhcChhhhhhhCCC-C---CCHHHHHhhcCC---CCCCcccHHHHHHHhhc
Q 018775 4 HEELLRGQAEVW--QLMFAFADSMALKSAVELRLADIMHSHGS-P---ITLPQLASRIDS---SCPDIPYLARLMRMLVR 74 (350)
Q Consensus 4 ~~~~~~~~~~l~--~~~~g~~~~~~l~~~~~lglfd~L~~~~~-~---~t~~ela~~~~~---~~~~~~~l~~~L~~L~~ 74 (350)
.++.++++..++ +++.|++.+++|++++++|||+.|.+. + | +|++|||+++|+ +|.+++.++|||++|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 456778889999 999999999999999999999999864 3 6 999999999999 76678999999999999
Q ss_pred CCceeec----ccCCCCCCCeEecChhchhhhcCCC-CChHHHHHHhcCchhhhhhhhhhHhHhcC-chhhhhhcCCChh
Q 018775 75 KGIFAVH----QSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQCVKEG-GIAFKKAHGCEIW 148 (350)
Q Consensus 75 ~g~l~~~----~~~~~~~~~~~~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~~~~~g~~~~ 148 (350)
.|+|++. +. + ..+++|++|+.+.+|.++++ .++++++.+..++.+++.|.+|+++++++ .+|++..+|.++|
T Consensus 95 ~gll~~~~~~~~~-g-~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~ 172 (372)
T 1fp1_D 95 YSVLTSTTRTIED-G-GAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172 (372)
T ss_dssp TTSEEEEEEECTT-S-CEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-------------
T ss_pred CCceEecccccCC-C-CcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHH
Confidence 9999987 20 0 00158999999998888876 67888888776666788999999999998 7889888898999
Q ss_pred hhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCC
Q 018775 149 DFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC 228 (350)
Q Consensus 149 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 228 (350)
+++.++++....|+..|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.
T Consensus 173 ~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~ 251 (372)
T 1fp1_D 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251 (372)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc
Confidence 999999999999999998887777778888875 3567899999999999999999999999999999999999999876
Q ss_pred CCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHh
Q 018775 229 EGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMF 307 (350)
Q Consensus 229 ~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~ 307 (350)
.+++++.+|+++++|.||+|++.++||||+++++..+|++++++|+ |||+|+|.|...++....+. ......+++.|+
T Consensus 252 ~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 330 (372)
T 1fp1_D 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF 330 (372)
T ss_dssp TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCccchHHHHHHHhhHHHH
Confidence 7899999999997777999999999999999999999999999999 99999999999877543211 002345677666
Q ss_pred hhcCCcccCCHHHHHHHHHhcCCceeEEEEc-CCceeEEEEee
Q 018775 308 AHTTGGKERTEQEWMKLLEQGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 308 ~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
...+ ++.++.++|.++|+++||+++++++. ++..+||+++|
T Consensus 331 ~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 331 ITVG-GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHS-CCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hccC-CccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 5445 78899999999999999999999984 55359999987
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2e-47 Score=355.14 Aligned_cols=327 Identities=17% Similarity=0.188 Sum_probs=265.4
Q ss_pred chHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 3 VHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 3 ~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.++++++..+++++.|++.+++|++++++||||.|.+.++|+|++|||+++|+ +++.++|||++|++.|+|++++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~~ 84 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLEE 84 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEET
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEecC
Confidence 3567888999999999999999999999999999999874479999999999999 8999999999999999998864
Q ss_pred cCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcC--CChhhhhccCcchHHH
Q 018775 83 SSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHG--CEIWDFASQSPQFNNL 160 (350)
Q Consensus 83 ~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 160 (350)
++|++|+.+.+|.++++. ..++.+. ....++.|.+|+++++++.+++...+| .++|+++.++++....
T Consensus 85 -------~~y~~t~~s~~L~~~~~~--~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (363)
T 3dp7_A 85 -------DRYVLAKAGWFLLNDKMA--RVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQK 154 (363)
T ss_dssp -------TEEEECHHHHHHHHCHHH--HHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred -------CEEecccchHHhhCCCcc--cchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHH
Confidence 899999999988876632 2223332 345788999999999999877777787 5899999999886653
Q ss_pred ----HHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CC
Q 018775 161 ----FNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CE 229 (350)
Q Consensus 161 ----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ 229 (350)
|+..|.... ...+++.+. ..+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+
T Consensus 155 ~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 155 SWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 555554332 123344443 35678999999999999999999999999999999988887764 35
Q ss_pred CeEEEeccCCCC---CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc--ccchhhh
Q 018775 230 GIFHVGGDMFDA---IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG--DMGLVFD 303 (350)
Q Consensus 230 ~i~~~~~d~~~~---~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~--~~~~~~~ 303 (350)
+|+++.+|++++ +| +||+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++....... ......+
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~ 308 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETLWDRQRYETASYCLTQISLY 308 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECCTTSCSSHHHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeeccCCccccchhhHHHHhhhh
Confidence 899999999984 66 5999999999999999999999999999999 999999999888765432100 0001122
Q ss_pred hhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 304 ~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
+.++...+ ++.++.++|.++|+++||+++++++.. ...++|+++|
T Consensus 309 ~~~~~~~~-~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 309 FTAMANGN-SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHSSCSS-CCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHhhhCCC-CcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 22333333 778899999999999999999999764 4589999987
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=2.5e-46 Score=349.53 Aligned_cols=326 Identities=24% Similarity=0.394 Sum_probs=280.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
..+....+++++.|++.+++|++++++|||+.|.. +|+|++|||+++|+ +++.++|||++|++.|++.+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999975 79999999999999 8999999999999999999965
Q ss_pred CCCC--eEecChhchhhhcCCCCChHHHHHHhcCchhh-hhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHH
Q 018775 87 GDET--LYKMTHISKWLLHDSELSLAPMILVENNQWLL-EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFND 163 (350)
Q Consensus 87 ~~~~--~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 163 (350)
++ .|++|+.+.++.++++.++..++.+..+...+ ..|.+|.+.++++.+++...+|.++|++...+++....|..
T Consensus 84 --~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 161 (374)
T 1qzz_A 84 --KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDA 161 (374)
T ss_dssp --C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred --CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHH
Confidence 46 89999999999888877888888766433455 78999999999998888888899999999999999999999
Q ss_pred HHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEec
Q 018775 164 AMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 164 ~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 236 (350)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++|+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 239 (374)
T 1qzz_A 162 LMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239 (374)
T ss_dssp TCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 998777766778888887 77889999999999999999999999999999999888887764 358999999
Q ss_pred cCCCCCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee--eecCCCCCcccccchhhhhhHhhhcCCc
Q 018775 237 DMFDAIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI--VVQEDGNNIFGDMGLVFDLVMFAHTTGG 313 (350)
Q Consensus 237 d~~~~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (350)
|+++++|. ||+|++.+++|+|+++++..+|++++++|+ |||+++|.|. ..++.... .....+++.++...+ +
T Consensus 240 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~-~ 314 (374)
T 1qzz_A 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADR---FFSTLLDLRMLTFMG-G 314 (374)
T ss_dssp CTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------H---HHHHHHHHHHHHHHS-C
T ss_pred CCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEechhhcCCCCCc---chhhhcchHHHHhCC-C
Confidence 99986665 999999999999999988899999999999 9999999998 76543221 123456777766566 8
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcCCce-----eEEEEeeC
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMPALY-----SIIEAYPQ 350 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~~ 350 (350)
+.++.++|.++|+++||+++++.+.++.. ++|+++|.
T Consensus 315 ~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 315 RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp CCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 89999999999999999999999988777 99999873
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=8e-46 Score=344.37 Aligned_cols=323 Identities=24% Similarity=0.424 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDE 89 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~ 89 (350)
...++++++.|++.+++|.+++++|||+.|.+ +|.|++|||+++|+ ++..++|+|++|++.|+|.+.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 36788999999999999999999999999975 79999999999999 8999999999999999999976 5
Q ss_pred CeEecChhchhhhcCCCCChHHHHHHhcCch-hhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 90 TLYKMTHISKWLLHDSELSLAPMILVENNQW-LLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 90 ~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++|++|+.+.++.++++.++..++.+..... .+..|.+|.+.++++.++++..+|.++|++...+++....|...|...
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~ 167 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACD 167 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHH
Confidence 8999999999999888778888876654333 567899999999999888888889999999998999999999999887
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+|++++
T Consensus 168 ~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 245 (360)
T 1tw3_A 168 QDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245 (360)
T ss_dssp TTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC
Confidence 7777778888888 77889999999999999999999999999999999888877654 35899999999986
Q ss_pred CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee-ecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 242 IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV-VQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 242 ~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
+|. ||+|++.+++|+|+++++..+|++++++|+ |||++++.|.. .++.... .....+++.++...+ ++.++.+
T Consensus 246 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~t~~ 320 (360)
T 1tw3_A 246 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFN---EQFTELDLRMLVFLG-GALRTRE 320 (360)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHS-CCCCBHH
T ss_pred CCCCccEEEEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEeccCCCCCc---chhhhccHHHhhhcC-CcCCCHH
Confidence 665 999999999999999998999999999999 99999999988 6544321 123456777766555 8899999
Q ss_pred HHHHHHHhcCCceeEEEEcCCc-----eeEEEEeeC
Q 018775 320 EWMKLLEQGGFHRCKIISMPAL-----YSIIEAYPQ 350 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~~ 350 (350)
+|.++|+++||+++++.+.++. .++|+++|.
T Consensus 321 e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 321 KWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp HHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 9999999999999999988765 789999873
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=7.9e-45 Score=334.37 Aligned_cols=316 Identities=20% Similarity=0.250 Sum_probs=275.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 11 QAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 11 ~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|+++ ++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~ 74 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AE 74 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CC
Confidence 3679999999999999999999999999996 79999999999999 899999999999999999985 48
Q ss_pred eEecChhc-hhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhh
Q 018775 91 LYKMTHIS-KWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTA 169 (350)
Q Consensus 91 ~~~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 169 (350)
+|++|+.+ .++.++++.+++.++.+..++..++.|.+|+++++++.++++ . |+++.++++....|...|....
T Consensus 75 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~ 148 (335)
T 2r3s_A 75 GYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMM 148 (335)
T ss_dssp EEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGG
T ss_pred EEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHH
Confidence 99999999 688887777888888877554578899999999999876554 2 7888888888899999998887
Q ss_pred hhhHHHHHHhcccCC--CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC
Q 018775 170 KIVMKALVSHYKDGF--DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD 240 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~ 240 (350)
......+++.++ . .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 149 ~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 149 ANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred hhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 777778888888 5 7889999999999999999999999999999999888877764 3579999999998
Q ss_pred -CCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 241 -AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 241 -~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+.++ ||+|++.+++|+|+++++.++|++++++|+ |||++++.|...++....+ .....+++.|+...++++.++.
T Consensus 227 ~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~ 303 (335)
T 2r3s_A 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRITP--PDAAAFSLVMLATTPNGDAYTF 303 (335)
T ss_dssp SCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSCS--HHHHHHHHHHHHHSSSCCCCCH
T ss_pred CCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCCc--hHHHHHHHHHHeeCCCCCcCCH
Confidence 6665 999999999999999999999999999999 9999999998887643321 2345667777776634889999
Q ss_pred HHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++|.++++++||+.+++++.++..++|++++
T Consensus 304 ~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 304 AEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334 (335)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSSSEEEEEE
T ss_pred HHHHHHHHHCCCCeeeEEECCCCceeEEEec
Confidence 9999999999999999999988888888864
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.8e-44 Score=335.01 Aligned_cols=314 Identities=19% Similarity=0.317 Sum_probs=269.8
Q ss_pred hHHhhhHHHHHHHHHH-hHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 4 HEELLRGQAEVWQLMF-AFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~-g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence 4567888899999996 9999999999999999999986 79999999999999 8999999999999999999986
Q ss_pred cCCCCCCCeEecChh-chhhhcCCC---CChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcc--
Q 018775 83 SSDGGDETLYKMTHI-SKWLLHDSE---LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQ-- 156 (350)
Q Consensus 83 ~~~~~~~~~~~~t~~-s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~-- 156 (350)
++|++|+. +.++.++++ .++++++.+. ....++.|.+|+++++++.+ |+++.++++
T Consensus 99 -------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~ 160 (359)
T 1x19_A 99 -------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVT 160 (359)
T ss_dssp -------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCS
T ss_pred -------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhh
Confidence 69999996 458887777 6888888765 34578899999999998753 667777888
Q ss_pred -hHHHHHHHHhhhhh-hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------
Q 018775 157 -FNNLFNDAMACTAK-IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------- 227 (350)
Q Consensus 157 -~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 227 (350)
....|...|..... .....+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 161 ~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 238 (359)
T 1x19_A 161 REDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC
Confidence 88899999998877 77788888888 77889999999999999999999999999999999888887763
Q ss_pred CCCeEEEeccCCC-CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH
Q 018775 228 CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM 306 (350)
Q Consensus 228 ~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 306 (350)
.++++++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+ |||+++|.|...++... + .....+ .+
T Consensus 239 ~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~-~--~~~~~~--~~ 312 (359)
T 1x19_A 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPEN-P--NFDYLS--HY 312 (359)
T ss_dssp TTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTTS-C--CHHHHH--HH
T ss_pred CCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCCC-c--hHHHHH--HH
Confidence 4679999999998 6777899999999999999989999999999999 99999999998876521 1 112222 33
Q ss_pred hhhcCCccc----CCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 307 FAHTTGGKE----RTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 307 ~~~~~~~~~----~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+...++++. ++.++|.++|+++||+++++.+.+ ..++|+++|
T Consensus 313 ~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 313 ILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 332332566 899999999999999999999988 788999987
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4.3e-44 Score=331.72 Aligned_cols=314 Identities=18% Similarity=0.280 Sum_probs=263.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
.++....+++++.|++.+++|++++++|||+.|. +|+|++|||+++|+ +++.++|||++|++.|++++++
T Consensus 21 ~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~~---- 90 (352)
T 3mcz_A 21 ALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKEG---- 90 (352)
T ss_dssp CCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEecC----
Confidence 3444555999999999999999999999999997 49999999999999 8999999999999999999986
Q ss_pred CCCCeEecChhch-hhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchh-hhhhcCCChhhhhccCcchHHHHHHH
Q 018775 87 GDETLYKMTHISK-WLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIA-FKKAHGCEIWDFASQSPQFNNLFNDA 164 (350)
Q Consensus 87 ~~~~~~~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 164 (350)
++|.+|+.+. ++.++++.+++.++.+. ...++.|.+|+++++++.+. |+.. .++..+++....|..+
T Consensus 91 ---~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 91 ---DAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp ---TEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHH
T ss_pred ---CeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHH
Confidence 7899999997 66677777888887654 34678999999999988632 2221 2345678888889999
Q ss_pred HhhhhhhhHHHHHHhcccCCCC-cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEec
Q 018775 165 MACTAKIVMKALVSHYKDGFDS-IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 165 m~~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 236 (350)
|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++++++.+++ .++++++.+
T Consensus 160 m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 236 (352)
T 3mcz_A 160 MVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEK 236 (352)
T ss_dssp HHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEEC
T ss_pred HHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 8873332 346788888 556 89999999999999999999999999999999888877654 368999999
Q ss_pred cCCC-C--CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 237 DMFD-A--IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 237 d~~~-~--~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
|+++ + .+. ||+|++.++||+|+++++..+|++++++|+ |||+|+|.|...++....+ .....+++.|+....+
T Consensus 237 d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~ 313 (352)
T 3mcz_A 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVTP--ALSADFSLHMMVNTNH 313 (352)
T ss_dssp CTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSSS--HHHHHHHHHHHHHSTT
T ss_pred CcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCC--chHHHhhHHHHhhCCC
Confidence 9998 4 554 999999999999999999999999999999 9999999999988765432 2345678888766645
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++.++|.++|+++||++++.. .+...++.++|
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 314 GELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 889999999999999999999843 35588888887
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.88 E-value=2.4e-22 Score=177.40 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=124.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~ 252 (350)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ..+|+++++|+.+ ++++||+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3678999999999999999999975 6789999999 899988764 4689999999998 788899999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-------------CcccCCHH
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-------------GGKERTEQ 319 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~s~~ 319 (350)
+||++++++...+|++++++|+ |||+|++.|..................++....... .-...+.+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeecCchhHhHHHHHHHHHcC-CCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 9999999888899999999999 999999999877654321000000000110000000 01235789
Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 320 EWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++|+++||+.++++--...+..+.|+|
T Consensus 227 ~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 227 THKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 999999999999999865333445556666
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.84 E-value=2.2e-20 Score=162.27 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=126.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 35678999999999999999999999999999999 888877654 3489999999998 554 5999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---------H---hhhcCCcccCCHHHHHHH
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---------M---FAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~s~~e~~~l 324 (350)
+++++...+|++++++|+ |||++++.+...+............+.... . .........++.+++.++
T Consensus 122 ~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILK-ESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp SCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 999888889999999999 999999999877654211000000000000 0 000111345688999999
Q ss_pred HHhcCCceeEEEEcCCceeEEEEee
Q 018775 325 LEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 325 l~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
|+++||+.++++.....++++...|
T Consensus 201 l~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 201 LKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHcCCCceeeeeeecceeEEEEEe
Confidence 9999999999988877788777765
No 19
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.79 E-value=1.8e-19 Score=155.58 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=118.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 478999999999999999999876 8999999 888887764 3789999999988 554 4999999999877
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh---cC-----------------CcccC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH---TT-----------------GGKER 316 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~~ 316 (350)
+..++...++++++++|+ |||++++.+...+.................+... .. +...+
T Consensus 116 ~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 194 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLK-PSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194 (227)
T ss_dssp CCHHHHHHHHHHHHHHEE-EEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcC-CCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence 777788899999999999 9999999887543221100000000000000000 00 00111
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+ .+|.++|+++||+.+++..++...++|+.+|.
T Consensus 195 ~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 195 G-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp C-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred c-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 2 48999999999999999999888889999884
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.79 E-value=2.1e-18 Score=148.24 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=122.2
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 37 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 37 ILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 344444 456789999999999999999987 678999999 888887765 2489999999998 554 5999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh--------HhhhcCCcccCCHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV--------MFAHTTGGKERTEQEWM 322 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~e~~ 322 (350)
..++||+++++...+|++++++|+ |||.+++.+......... ....... ...... ...++.++|.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTIFADQDAY-----DKTVEAAKQRGFHQLANDLQT-EYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEECBSSHHHH-----HHHHHHHHHTTCHHHHHHHHH-SCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEeccccChHHH-----HHHHHHHHhCCCccchhhcch-hhcCCHHHHH
Confidence 999999999887789999999999 999999998665442211 0000000 000000 1334789999
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
++|+++||+++.+. .....+++.+.|.
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEEC
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehhh
Confidence 99999999866554 4577888888763
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.79 E-value=1.2e-18 Score=149.58 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=126.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 34555555 6778899999999999999999986 8889999999 888887764 2479999999988 554
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.........+ .....++.++|.
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAK-PFAYLAIIDWKKEERDKGP----------------PPEEVYSEWEVG 165 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEE-EEEEEEEEEECSSCCSSSC----------------CGGGSCCHHHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhC-CCeEEEEEEecccccccCC----------------chhcccCHHHHH
Confidence 39999999999998764 578999999999 9999999987665542210 002345789999
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++++++||+++++...+.....+.++|
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 999999999999999888777777776
No 22
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.77 E-value=6.8e-18 Score=144.65 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=113.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCCCC--CccEEEecchhccCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDAIP--KADAVFMKWILHDWD 258 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~ 258 (350)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++||++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 456679999999999999999998 568999999 888888775 3689999999988533 499999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC------cccCCHHHHHHHHHhcCCce
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG------GKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~e~~~ll~~aGf~~ 332 (350)
+++...+|++++++|+ |||++++.+...+......... .............+ ....+.++|.++++++||++
T Consensus 122 ~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVA-PGGVVEFVDVTDHERRLEQQDD-SEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp HHHHHHHHHHHHHHEE-EEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHcC-CCeEEEEEeCCCCccccchhhh-cccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 9888899999999999 9999999987764322110000 00000000000010 12358999999999999995
Q ss_pred eEEEEcCCceeEEEEee
Q 018775 333 CKIISMPALYSIIEAYP 349 (350)
Q Consensus 333 ~~~~~~~~~~~vi~~~~ 349 (350)
.. ......+....++|
T Consensus 200 ~~-~~~~~~~~~~~~~~ 215 (218)
T 3ou2_A 200 SV-DEVHPGFLYATCRP 215 (218)
T ss_dssp EE-EEEETTEEEEEEEE
T ss_pred Ee-eeccccceEeecCC
Confidence 54 44443333333433
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.77 E-value=3.2e-18 Score=151.26 Aligned_cols=155 Identities=18% Similarity=0.287 Sum_probs=123.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 44555665 6778899999999999999999987 679999999 888887764 2689999999998 665 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++||+++++...+|++++++|+ |||++++.+...+..... ...+...... .+ ...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~~-~~-~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCATEKENW-----DDEFKEYVKQ-RK-YTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEESCGGGC-----CHHHHHHHHH-HT-CCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccCCcccc-----hHHHHHHHhc-CC-CCCCCHHHHHHHH
Confidence 99999999999988888999999999999 999999999877652211 1111111111 12 3466899999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999987754
No 24
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.77 E-value=5.9e-18 Score=150.36 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=122.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 355666676 6788999999999999999999987 689999999 888877653 4589999999998 665
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.......... .....+.... ..++...++.++|
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~ 199 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLR-PGGTVAIADFVLLAPVEGA---KKEAVDAFRA-GGGVLSLGGIDEY 199 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEE-EEEEEEEEEEEESSCCCHH---HHHHHHHHHH-HHTCCCCCCHHHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcC-CCeEEEEEEeeccCCCChh---HHHHHHHHHh-hcCccCCCCHHHH
Confidence 49999999999998775 578999999999 9999999998776533210 0111111111 1222567799999
Q ss_pred HHHHHhcCCceeEEEEcC
Q 018775 322 MKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~~ 339 (350)
.++++++||+++++..++
T Consensus 200 ~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHTTCEEEEEEECH
T ss_pred HHHHHHcCCeEEEEEECc
Confidence 999999999999887763
No 25
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.77 E-value=2.8e-19 Score=153.26 Aligned_cols=169 Identities=17% Similarity=0.218 Sum_probs=121.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 33 ~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 33 AENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 344555555 4455 9999999999999999998 8889999999 888887764 3589999999998 665
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc-cc-hhhhhhHhhhcCCcccCCHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD-MG-LVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~s~~ 319 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+......... .. ....+....... ...++.+
T Consensus 109 ~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 184 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDV--ATAFREIYRILK-SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKN-ISQENVE 184 (219)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHH-SSHHHHH
T ss_pred cccccEEEECchHhhccCH--HHHHHHHHHhCC-CCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhc-cccCCHH
Confidence 39999999999998654 578999999999 9999999874443211000000 00 000000000001 2334789
Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 320 EWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+|.++|+++||+++++........++..+|
T Consensus 185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILGDEGFWIIISKT 214 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEETTEEEEEEBCC
T ss_pred HHHHHHHHcCCCeEEEEecCCceEEEEecc
Confidence 999999999999999998877776665544
No 26
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.77 E-value=9e-18 Score=150.37 Aligned_cols=161 Identities=12% Similarity=0.169 Sum_probs=122.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~ 244 (350)
..+++.++ ..++.+|||||||+|.++..++++++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ..
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 129 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP 129 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence 44566666 67788999999999999999997764 49999999 888887654 3589999999976 4 56
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-----ccc-ccchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-----IFG-DMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||+|++..++||+++++...+|++++++|+ |||++++.+......... +.. ......+.......+++..++.
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 999999999999987777899999999999 999999999877543210 000 0001111111223343667799
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
++|.++++++||+++++...+
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHhCCcEEEEEEeCc
Confidence 999999999999999987753
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.76 E-value=9.2e-18 Score=151.07 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=119.5
Q ss_pred HHHHHhc----ccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-
Q 018775 174 KALVSHY----KDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD- 240 (350)
Q Consensus 174 ~~~~~~~----~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~- 240 (350)
..+++.+ . ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4455555 4 6678899999999999999999986 468999999 888887754 3689999999998
Q ss_pred CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 241 AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 241 ~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+++ .||+|++..++||+++ ...+|++++++|+ |||++++.+......... .....+...... ....+.
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~ 214 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLK-PRGVMAITDPMKEDGIDK-----SSIQPILDRIKL--HDMGSL 214 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEEEECTTCCG-----GGGHHHHHHHTC--SSCCCH
T ss_pred CCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcC-CCeEEEEEEeccCCCCch-----HHHHHHHHHhcC--CCCCCH
Confidence 665 3999999999999987 4688999999999 999999999887654321 111111111111 235589
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
++|.++++++||+++++..++
T Consensus 215 ~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHHCCCeEEEEEECc
Confidence 999999999999999987753
No 28
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.76 E-value=2.2e-18 Score=152.40 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=118.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecc-hhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKW-ILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh~~~~ 259 (350)
+++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 456899999999999999999885 47999999 888888875 4589999999998 554 499999998 9999865
Q ss_pred -HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc---------------------ccchhhhhhHhhhcCC-----
Q 018775 260 -EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG---------------------DMGLVFDLVMFAHTTG----- 312 (350)
Q Consensus 260 -~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~----- 312 (350)
++...+|++++++|+ |||++++.+...+........ .....+++.+....++
T Consensus 127 ~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 127 QAELDAALERFAAHVL-PDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 567799999999999 999999865433332211000 0000001111110010
Q ss_pred ------cccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 313 ------GKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 313 ------~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
.+.++.++|.++|+++||+++++........++.++|
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999877777777788877
No 29
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=2.8e-18 Score=151.45 Aligned_cols=154 Identities=18% Similarity=0.332 Sum_probs=117.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p- 243 (350)
...+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 345556665 66789999999999999999999875 8999999 888887764 2579999999998 765
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-HhhhcCCcccCCHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~ 321 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+.... ...++... ......+...++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLK-KGGQLLLVDNSAPENDA-----FDVFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEEEBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcC-CCCEEEEEEcCCCCCHH-----HHHHHHHHHHhcCccccCCCCHHHH
Confidence 49999999999999876 478999999999 99999999877654311 11111111 1111111355689999
Q ss_pred HHHHHhcCCceeEEEEc
Q 018775 322 MKLLEQGGFHRCKIISM 338 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~ 338 (350)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998887654
No 30
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.75 E-value=2.6e-17 Score=149.23 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=123.7
Q ss_pred HhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEec
Q 018775 165 MACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 165 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~ 236 (350)
+..........+++.++ ...++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33334334455666654 24678899999999999999999985 578999999 888887764 358999999
Q ss_pred cCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc
Q 018775 237 DMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG 313 (350)
Q Consensus 237 d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (350)
|+.+ +++ .||+|++..++||++ ...+|++++++|+ |||++++.+......... ............. .
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~--~ 244 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLK-VGGRYVTITGCWNPRYGQ----PSKWVSQINAHFE--C 244 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEE-EEEEEEEEEEEECTTTCS----CCHHHHHHHHHHT--C
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcC-CCcEEEEEEccccccccc----hhHHHHHHHhhhc--C
Confidence 9998 655 499999999999984 5689999999999 999999999887664321 1111222211112 2
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
..++.++|.++++++||+++++..++
T Consensus 245 ~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 245 NIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 36689999999999999999988753
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.75 E-value=2.7e-18 Score=150.84 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=117.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 44555565 5678999999999999999999886 457999998 888887764 2679999999987 554 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++.+++||+++++...+|++++++|+ |||++++.+........ ..+. ... ...++.++|.++|
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~--------~~~~----~~~-~~~~~~~~~~~~l 225 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRF--------LVDK----EDS-SLTRSDIHYKRLF 225 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCE--------EEET----TTT-EEEBCHHHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccc--------eecc----cCC-cccCCHHHHHHHH
Confidence 99999999999998888999999999999 99999998865433211 0110 111 3456899999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||+++++....
T Consensus 226 ~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 226 NESGVRVVKEAFQE 239 (254)
T ss_dssp HHHTCCEEEEEECT
T ss_pred HHCCCEEEEeeecC
Confidence 99999999987754
No 32
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.75 E-value=1.2e-17 Score=146.98 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=117.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p- 243 (350)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34455555 6778999999999999999999987 678999999 888887754 3589999999998 443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.......... ..... ... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~-----~~~~~-~~~-~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLK-PGGIMLIGEPYWRQLPATE-----EIAQA-CGV-SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEE-EEEEEEEEEEEETTCCSSH-----HHHHT-TTC-SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcC-CCeEEEEecCcccCCCChH-----HHHHH-Hhc-ccccccCCHHHHHH
Confidence 49999999999998754 578999999999 9999999998765543210 01100 000 11124568999999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
No 33
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.75 E-value=1.2e-17 Score=150.85 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 45666666 67889999999999999999999876 79999999 888887764 348999999997652359
Q ss_pred cEEEecchhccCCh-------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc------chhhhhhHhhhcCC
Q 018775 246 DAVFMKWILHDWDD-------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM------GLVFDLVMFAHTTG 312 (350)
Q Consensus 246 D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 312 (350)
|+|++..++||+++ ++...++++++++|+ |||++++.+...+.......... ....++.....+++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999944 567799999999999 99999998887664321100000 00112222223444
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
+..++.+++.++++++||+++++..++.
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 6778999999999999999999887653
No 34
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.74 E-value=5.6e-18 Score=143.79 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=117.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCChHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~ 261 (350)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999987 568999999 888888876 5689999999988 554 499999999999998777
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC-
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA- 340 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~- 340 (350)
...+|++++++|+ |||++++.....+.... + .. .... ...++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~--~---~~-------~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVE-DGGGLLMSFFSGPSLEP--M---YH-------PVAT-AYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEE-EEEEEEEEEECCSSCEE--E---CC-------SSSC-EEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcC-CCcEEEEEEccCCchhh--h---hc-------hhhh-hccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 8899999999999 99999998765543110 0 00 0011 3456899999999999999999988754
Q ss_pred ceeEEEEe
Q 018775 341 LYSIIEAY 348 (350)
Q Consensus 341 ~~~vi~~~ 348 (350)
++..+...
T Consensus 186 p~~~l~~~ 193 (203)
T 3h2b_A 186 PHAYLTAE 193 (203)
T ss_dssp SEEEEEEE
T ss_pred cchhhhhh
Confidence 45555443
No 35
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.74 E-value=4.3e-17 Score=142.11 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=111.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~ 257 (350)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999987 557899999 8899888754 8999999876 444 49999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++++...+|++++++|+ |||++++....... .....+.. ....+...++.+++.++++++||+++++..
T Consensus 115 ~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 115 DPERLFELLSLCYSKMK-YSSYIVIESPNPTS--------LYSLINFY--IDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp CGGGHHHHHHHHHHHBC-TTCCEEEEEECTTS--------HHHHHHHT--TSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHcC-CCcEEEEEeCCcch--------hHHHHHHh--cCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 98888899999999999 99999987654211 11111111 111223556899999999999999998876
Q ss_pred cC
Q 018775 338 MP 339 (350)
Q Consensus 338 ~~ 339 (350)
..
T Consensus 184 ~~ 185 (240)
T 3dli_A 184 FE 185 (240)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 36
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.74 E-value=4.2e-17 Score=148.27 Aligned_cols=163 Identities=14% Similarity=0.185 Sum_probs=123.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+....
T Consensus 79 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 155 (318)
T ss_dssp HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence 345666666 6778899999999999999999886 569999999 888887764 25799999998762246
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc------cchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD------MGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||+|++..++||+++++...+|++++++|+ |||++++.+...+......... .....++......+++..++.
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 999999999999987778899999999999 9999999888765522100000 000111211122333567799
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
+++.++++++||+++++..++
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHHhCCCEEEEEEecc
Confidence 999999999999999887653
No 37
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.74 E-value=6.6e-18 Score=152.70 Aligned_cols=165 Identities=17% Similarity=0.120 Sum_probs=121.3
Q ss_pred CCCcceEEEecCCchHHHHHHH-HHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIV-KSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4678899999999999999996 6688999999999 888887764 3569999999998 554 499999999
Q ss_pred hhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc----ccc----hhhhhhHhhhcCC--cccCCHHHH
Q 018775 253 ILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG----DMG----LVFDLVMFAHTTG--GKERTEQEW 321 (350)
Q Consensus 253 vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~--~~~~s~~e~ 321 (350)
++||+++.+ ...++++++++|+ |||++++.+...+........ ... ......+...... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALK-PGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999997554 4579999999999 999999988665543322110 000 0000011111110 134689999
Q ss_pred HHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 322 MKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
.++|+++||+++++.... .....+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999998764 3455677766
No 38
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.73 E-value=1.4e-17 Score=144.85 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=118.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe-cchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM-KWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~-~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999876 8999999 888888775 4679999999988 554 4999995 559999854
Q ss_pred -HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc---------------------cchhhhhhHhhhcCCc----
Q 018775 260 -EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD---------------------MGLVFDLVMFAHTTGG---- 313 (350)
Q Consensus 260 -~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~---- 313 (350)
++...+|++++++|+ |||++++.+...++........ ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T 3bxo_A 117 TEELGAAVASFAEHLE-PGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRH 195 (239)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceE
Confidence 577899999999999 9999998766554432110000 0000011111111101
Q ss_pred -------ccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 314 -------KERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 314 -------~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+.++.++|.++|+++||+++.+....+...++.|+|.
T Consensus 196 ~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 196 FSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3468999999999999977766555566789999873
No 39
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.73 E-value=1.4e-17 Score=145.12 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=116.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 44555566 77889999999999999999998865 8999999 888887764 2579999999987 655
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhcCCcccCCHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+.... ...+... .......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLK-QDGRFLLVDHYAPEDPV-----LDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEECBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcC-CCcEEEEEEcCCCCChh-----HHHHHHHHHHhccccccCCCCHHHHH
Confidence 39999999999999865 578999999999 99999999877654311 1111111 111111113556899999
Q ss_pred HHHHhcCCceeEEEEc
Q 018775 323 KLLEQGGFHRCKIISM 338 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~ 338 (350)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998887654
No 40
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.73 E-value=4e-17 Score=143.64 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=113.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 567789999999999999999999876 9999999 888887654 4579999999987 655 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++||++ ...+|++++++|+ |||++++.+......... ......... .. ....+.++|.++++++||++
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~-~~--~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLK-KGGFIAVSEASWFTSERP-----AEIEDFWMD-AY--PEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEE-EEEEEEEEEEEESSSCCC-----HHHHHHHHH-HC--TTCCBHHHHHHHHHHTTEEE
T ss_pred hHhhcC---HHHHHHHHHHHcC-CCcEEEEEEeeccCCCCh-----HHHHHHHHH-hC--CCCCCHHHHHHHHHHCCCeE
Confidence 999983 3578999999999 999999999875554322 111122111 12 23568999999999999999
Q ss_pred eEEEEcC
Q 018775 333 CKIISMP 339 (350)
Q Consensus 333 ~~~~~~~ 339 (350)
+++...+
T Consensus 191 v~~~~~~ 197 (257)
T 3f4k_A 191 TAHFILP 197 (257)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9988765
No 41
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.72 E-value=4.9e-17 Score=144.06 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=114.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 567899999999999999999998 7889999999 888887764 3679999999988 654 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++|+++ ...+|++++++|+ |||++++.+......... ........ ... ....+.+++.++++++||++
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~~~~~~~~-~~~--~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLK-KGGYLAVSECSWFTDERP-----AEINDFWM-DAY--PEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEE-EEEEEEEEEEEESSSCCC-----HHHHHHHH-HHC--TTCEEHHHHHHHHHHTTEEE
T ss_pred CceecC---HHHHHHHHHHHcC-CCCEEEEEEeeecCCCCh-----HHHHHHHH-HhC--CCCCCHHHHHHHHHHCCCEE
Confidence 999983 3578999999999 999999999876544322 11111111 112 24558999999999999999
Q ss_pred eEEEEcC
Q 018775 333 CKIISMP 339 (350)
Q Consensus 333 ~~~~~~~ 339 (350)
+++..++
T Consensus 191 v~~~~~~ 197 (267)
T 3kkz_A 191 VATFILP 197 (267)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998876
No 42
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.72 E-value=3.5e-17 Score=147.52 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=120.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----C----CCeEEEeccCCC-C
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----C----EGIFHVGGDMFD-A 241 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~~i~~~~~d~~~-~ 241 (350)
...+++.++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +
T Consensus 72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 344555555 2 3449999999999999999987 568999999 888888765 1 689999999998 5
Q ss_pred CC-CccEEEe-cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc-------h------------
Q 018775 242 IP-KADAVFM-KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG-------L------------ 300 (350)
Q Consensus 242 ~p-~~D~i~~-~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~-------~------------ 300 (350)
.+ .||+|++ ..++|++++++...+|++++++|+ |||+|++.....+........... .
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLE-PGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcC-CCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55 4998886 477888888788999999999999 999999977655432110000000 0
Q ss_pred -hhhhhHhh----------hcCCcccCCHHHHHHHHHhcCCceeEEEEcCC------ceeEEEEee
Q 018775 301 -VFDLVMFA----------HTTGGKERTEQEWMKLLEQGGFHRCKIISMPA------LYSIIEAYP 349 (350)
Q Consensus 301 -~~~~~~~~----------~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~~ 349 (350)
...+.+.. .....+.++.++|.++|+++||+++++.+.+. ...++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 00000000 00001245999999999999999999988752 235777654
No 43
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.72 E-value=2.4e-17 Score=146.67 Aligned_cols=151 Identities=15% Similarity=0.280 Sum_probs=114.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56789999999999999999999999999999999 888887754 3579999999998 554 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc-ccchhhhh-h-HhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG-DMGLVFDL-V-MFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
+||+++.. .+|++++++|+ |||.+++.+.........+.. .....+.. . .....+ +..++..++.++|+++||
T Consensus 115 l~~~~~~~--~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLK-PGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMK-GNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEE-EEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTT-CCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCHH--HHHHHHHHHcC-CCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHCCC
Confidence 99998764 78999999999 999999988654322100000 00111111 1 111222 455677899999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
+++++.+.
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99988754
No 44
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.71 E-value=3e-17 Score=139.44 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=106.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------------CCCeEEEeccCCC-CCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~p 243 (350)
..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..+++++++|+.+ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 567889999999999999999997 568999999 889887753 2479999999998 543
Q ss_pred ---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 244 ---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 244 ---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.||+|++..++|++++++...++++++++|+ |||+++++....+.... ..+ ....+.++
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk-pgG~~~l~~~~~~~~~~----------------~~~-~~~~~~~e 159 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLLITLEYDQALL----------------EGP-PFSVPQTW 159 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEEEEESSCSSSS----------------SSC-CCCCCHHH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEecCcccc----------------CCC-CCCCCHHH
Confidence 4999999999999998888889999999999 99996655433321100 001 12347899
Q ss_pred HHHHHHhcCCceeEEEEc
Q 018775 321 WMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~ 338 (350)
+.+++++ ||+++.+...
T Consensus 160 l~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 160 LHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHTSCS-SEEEEEEEES
T ss_pred HHHHhcC-CcEEEEeccc
Confidence 9999999 9998877664
No 45
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.71 E-value=3.5e-17 Score=142.21 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=108.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5678999999 888887764 2469999999998 333 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
+++++...+|++++++|+ |||++++.+......... . ....+.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLK-PDGELITLMYPITDHVGG-----------------P-PYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEE-EEEEEEEEECCCSCCCSC-----------------S-SCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCC-CCcEEEEEEecccccCCC-----------------C-CccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888899999999999 999999977655432211 0 123578999999999999999988
Q ss_pred EcC
Q 018775 337 SMP 339 (350)
Q Consensus 337 ~~~ 339 (350)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
No 46
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.71 E-value=2.7e-16 Score=146.01 Aligned_cols=214 Identities=10% Similarity=0.007 Sum_probs=140.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCCCChHHH
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSELSLAPM 112 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~~~~~~~ 112 (350)
++|..| . +|.|.+|||+.+++ +++.+++||++|.+.|+++..+ + |++|+.+. ++...+.......
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~~-------~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFED-------G-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECSS-------S-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEECC-------C-EEECHHHHHHHHhcCccccccc
Confidence 789999 4 69999999999999 8999999999999999998864 5 99999776 4443221111111
Q ss_pred HH-Hhc-----CchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCC
Q 018775 113 IL-VEN-----NQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186 (350)
Q Consensus 113 ~~-~~~-----~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 186 (350)
+. ... ...+...|..+.+.++....+.. .|+.....+.. .....+ .... .. ..+
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~l---------~~~~-~~--~~~ 172 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRPEPLH------EFDQAYVTPET--TVARVI---------LMHT-RG--DLE 172 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCCCCCG------GGTCCCBCHHH--HHHHHH---------HHHH-TT--CST
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCCccch------hcCCeecCHHH--HHHHHH---------HHhh-cC--CCC
Confidence 10 000 01112234555555554321111 11110011111 111111 0011 11 235
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-----CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-----KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-----~~D~i~~~~vl 254 (350)
+.+||||| |+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.+++| .||+|++...+
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 68999999 99999999999988889999999 899888765 2389999999988432 49999998766
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+.. ....++++++++|+ |||++++++..
T Consensus 252 ~~~---~~~~~l~~~~~~Lk-pgG~~~~~~~~ 279 (373)
T 2qm3_A 252 TLE---AIRAFVGRGIATLK-GPRCAGYFGIT 279 (373)
T ss_dssp SHH---HHHHHHHHHHHTBC-STTCEEEEEEC
T ss_pred chH---HHHHHHHHHHHHcc-cCCeEEEEEEe
Confidence 543 24789999999999 99987665543
No 47
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.3e-17 Score=135.92 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=114.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCCCccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~ 260 (350)
..++.+|||||||+|.++..+++... +++++|+ +.+++.+++ ..++++..+| .. +...||+|++..++||+++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 66788999999999999999999874 8999999 888887765 5789999999 32 22359999999999998754
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
..++++++++|+ |||++++.+.........+ .....++.++|.++++ ||+++++...+.
T Consensus 92 --~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~ 150 (170)
T 3i9f_A 92 --QHVISEVKRILK-DDGRVIIIDWRKENTGIGP----------------PLSIRMDEKDYMGWFS--NFVVEKRFNPTP 150 (170)
T ss_dssp --HHHHHHHHHHEE-EEEEEEEEEECSSCCSSSS----------------CGGGCCCHHHHHHHTT--TEEEEEEECSST
T ss_pred --HHHHHHHHHhcC-CCCEEEEEEcCccccccCc----------------hHhhhcCHHHHHHHHh--CcEEEEccCCCC
Confidence 588999999999 9999999987665433211 0023357999999999 999999999987
Q ss_pred ceeEEEEee
Q 018775 341 LYSIIEAYP 349 (350)
Q Consensus 341 ~~~vi~~~~ 349 (350)
....+.+.+
T Consensus 151 ~~~~l~~~~ 159 (170)
T 3i9f_A 151 YHFGLVLKR 159 (170)
T ss_dssp TEEEEEEEE
T ss_pred ceEEEEEec
Confidence 777666654
No 48
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.71 E-value=7.5e-17 Score=138.50 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=105.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C----CCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C----EGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~i~~~~~d~~~-~~p--~~D~i 248 (350)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34678999999999999999999988899999999 888887764 1 289999999976 432 49999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~l 324 (350)
++..++||+++++...+|++++++|+ |||.+++........... ......... ..+...++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVSTPNKEYNFHYG------NLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEBGGGGGCCC------CT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEccchhhhhhhc------ccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 99999999999888899999999999 999655443321111100 000001111 1113445788888 88
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (219)
T 3jwg_A 179 AEKYGYSVRFL 189 (219)
T ss_dssp HHHHTEEEEEE
T ss_pred HHHCCcEEEEE
Confidence 99999976543
No 49
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.71 E-value=1.1e-16 Score=142.26 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=111.2
Q ss_pred CCcceEEEecCCc---hHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCC------------C--
Q 018775 185 DSIQSLADVGGGT---GGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDA------------I-- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~------------~-- 242 (350)
.+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..+++++.+|+.++ +
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3458999999999 998888888899999999999 899888764 46899999999762 2
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
..||+|++..+|||+++++...+|++++++|+ |||+|++.+...+. .. ......+.......+ ...++.+++.
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~~~~~--~~---~~~~~~~~~~~~~~~-~~~~s~~ei~ 228 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSLVDTG--LP---AQQKLARITRENLGE-GWARTPEEIE 228 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEEBCSS--CH---HHHHHHHHHHHHHSC-CCCBCHHHHH
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEecCcc--hH---HHHHHHHHHHhcCCC-CccCCHHHHH
Confidence 35999999999999998878899999999999 99999999876532 11 011222322222233 5678999999
Q ss_pred HHHHhcCCceeE
Q 018775 323 KLLEQGGFHRCK 334 (350)
Q Consensus 323 ~ll~~aGf~~~~ 334 (350)
++| .||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5998775
No 50
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.71 E-value=7e-17 Score=140.71 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=109.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999997 568999999 888887765 5789999999998 654 49999999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++. ..+|++++++|+ |||++++.+......... ..+......... ...++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLK-SDGYACIAILGPTAKPRE------NSYPRLYGKDVV-CNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEE-EEEEEEEEEECTTCGGGG------GGGGGGGTCCCS-SCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhC-CCeEEEEEEcCCcchhhh------hhhhhhcccccc-ccCCCHHHHHHHHHHcCCEEEEeec
Confidence 765 478999999999 999999987543322110 111111111111 3456899999999999999999875
Q ss_pred c
Q 018775 338 M 338 (350)
Q Consensus 338 ~ 338 (350)
+
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 51
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.70 E-value=2.6e-17 Score=143.54 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=112.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999876 568999999 888887764 2358999999887 444 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
|+++++...+|++++++|+ |||++++.+....... .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGV---------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSE---------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCCCcc---------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9999888899999999999 9999999988765410 0110 11134458999999999999999999
Q ss_pred EEcC
Q 018775 336 ISMP 339 (350)
Q Consensus 336 ~~~~ 339 (350)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 8764
No 52
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.70 E-value=9.6e-17 Score=149.62 Aligned_cols=144 Identities=17% Similarity=0.291 Sum_probs=113.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCCC--------------CCeEEEeccCCC-------C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPVC--------------EGIFHVGGDMFD-------A 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d~~~-------~ 241 (350)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999986 7889999999 8888877641 689999999987 4
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
++ .||+|++..++|++++. ..+|++++++|+ |||+|++.+......... ............. +..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLR-DGGELYFSDVYADRRLSE-----AAQQDPILYGECL-GGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEEEESSCCCH-----HHHHCHHHHHTTC-TTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcC-CCCEEEEEEeccccccCH-----hHhhhHHHhhccc-ccCCCHH
Confidence 44 39999999999998875 588999999999 999999998877653321 1111222222222 4567899
Q ss_pred HHHHHHHhcCCceeEEEE
Q 018775 320 EWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~ 337 (350)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
No 53
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.70 E-value=6.3e-17 Score=142.09 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=111.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~ 247 (350)
.+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3455555 457899999999999999999998654 8999999 888887765 4689999999987 654 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC------------CCCCcccccchhhhh-----hHh-hh
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE------------DGNNIFGDMGLVFDL-----VMF-AH 309 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~------------~~~~~~~~~~~~~~~-----~~~-~~ 309 (350)
|++..++||+++ ...+|++++++|+ |||++++....... ............++- ... ..
T Consensus 112 v~~~~~l~~~~~--~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYIAS--FDDICKKVYINLK-SSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhhhh--HHHHHHHHHHHcC-CCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecccc
Confidence 999999999865 4688999999999 99999986533210 000000000000000 000 00
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.. ...++.++|.++|+++||+++++...
T Consensus 189 ~~-~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 189 VQ-KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EE-EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred Cc-cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 01 12348999999999999999998754
No 54
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.69 E-value=8.1e-17 Score=137.47 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC-CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~ 260 (350)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..+++++.+|+.+ +.+ .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 346789999999999999999987 568999999 8888888754467888899887 533 49999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC-CceeEEEEc
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG-FHRCKIISM 338 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG-f~~~~~~~~ 338 (350)
+...+|++++++|+ |||++++............ . ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALK-PGGLFYASYKSGEGEGRDK-------L-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEE-EEEEEEEEEECCSSCEECT-------T-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcC-CCcEEEEEEcCCCcccccc-------c-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88899999999999 9999998754333211100 0 00023458999999999999 999998764
No 55
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.69 E-value=5e-16 Score=137.15 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=114.3
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVF 249 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~ 249 (350)
..+.+.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34455555 56789999999999999999997 6789999999 8999998876699999999988 665 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+.+++||+++. ..+|++++++|+ ||++++.+...+...... ....+... ..... ...++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk--gG~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR--DGTIVLLTFDIRLAQRIW---LYDYFPFL-WEDAL-RFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC--SSCEEEEEECGGGCCCCG---GGGTCHHH-HHHHH-TSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC--CcEEEEEEcCCchhHHHH---HHHHHHHH-hhhhh-hhCCCHHHHH-HHHHcC
Confidence 99999998664 588999999999 899999887654332210 00111111 11111 2344678888 999999
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 999988765
No 56
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.69 E-value=1.4e-16 Score=142.53 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=111.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCC-ccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPK-ADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~-~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.++ ||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 567899999999999999999999984 89999999 888877654 3489999999998 5554 9999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec--------CCCCC-cccccchhhhhhH--hhhcCCcccCCHHHHHH
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ--------EDGNN-IFGDMGLVFDLVM--FAHTTGGKERTEQEWMK 323 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~--------~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~ 323 (350)
|++++. ..++++++++|+ |||++++.++... ++... .......+..+.. ....+ ....+.+++.+
T Consensus 100 ~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 175 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVK-KGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG-KDGNIGMKIPI 175 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEE-EEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC-CCTTGGGTHHH
T ss_pred hcCCCH--HHHHHHHHHHcC-CCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc-ccccHHHHHHH
Confidence 999876 488999999999 9999999887611 11100 0000111111111 11122 34456778999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+|+++||+.+++...
T Consensus 176 ~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 176 YLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHcCCCeEEEEEc
Confidence 999999999987543
No 57
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.68 E-value=3.3e-16 Score=136.40 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=110.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~ 247 (350)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444455 45688999999999999999998732 38999999 888887764 3479999999988 554 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC--CCCCcc--cc-------cchhh-----hhhHhh-hc
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE--DGNNIF--GD-------MGLVF-----DLVMFA-HT 310 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~--~~~~~~--~~-------~~~~~-----~~~~~~-~~ 310 (350)
|++..++||+++ ...+|++++++|+ |||++++....... ...... .. ....+ ...... ..
T Consensus 111 v~~~~~l~~~~~--~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3bkw_A 111 AYSSLALHYVED--VARLFRTVHQALS-PGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV 187 (243)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSC
T ss_pred EEEeccccccch--HHHHHHHHHHhcC-cCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCce
Confidence 999999999875 4588999999999 99999997743211 000000 00 00000 000000 11
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
. ...++.++|.++|+++||+++++...
T Consensus 188 ~-~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 188 V-KHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp C-EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred E-EEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1 23468999999999999999998764
No 58
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.68 E-value=1.4e-16 Score=136.70 Aligned_cols=143 Identities=13% Similarity=0.018 Sum_probs=104.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C----CCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C----EGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~i~~~~~d~~~-~~p--~~D~i 248 (350)
..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 35678999999999999999999988889999999 888887754 1 279999999976 433 59999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~l 324 (350)
++..++||+++++...+|++++++|+ |||.+++........... ........ ...+...++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTPNIEYNVKFA------NLPAGKLR-HKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEBHHHHHHTC------------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEccCcccchhhc------cccccccc-ccccccccCHHHHHHHHHHH
Confidence 99999999999888899999999999 999766654321100000 00000000 01113445888888 99
Q ss_pred HHhcCCceeE
Q 018775 325 LEQGGFHRCK 334 (350)
Q Consensus 325 l~~aGf~~~~ 334 (350)
++++||++..
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998654
No 59
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.68 E-value=1.7e-16 Score=138.55 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=107.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCCCC--CccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDAIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998866 6899999 888887765 2289999999987433 4999999999999987
Q ss_pred HHHHHHHHHHH-hhCCCCCceEEEEeeeecCCCC------CcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 260 EACVKILKNCR-QAIPDKSGKLVLVEIVVQEDGN------NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 260 ~~~~~~L~~~~-~~L~~pgG~lli~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
. ..+|++++ ++|+ |||++++.++....... ........+..... ...+...++.+++.++|+++||++
T Consensus 119 ~--~~~l~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 119 P--VALLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF--AHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp H--HHHHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHH--HTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred H--HHHHHHHHHHhcC-CCCEEEEEcCChHHHHHHHHHHcCccccchhcccccc--cccccccCCHHHHHHHHHHCCCeE
Confidence 6 58899999 9999 99999998754322100 00000000000000 112245679999999999999999
Q ss_pred eEEEEc
Q 018775 333 CKIISM 338 (350)
Q Consensus 333 ~~~~~~ 338 (350)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 988653
No 60
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.67 E-value=2.9e-16 Score=135.93 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=109.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~-~~p--~~D~i 248 (350)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999987 668999999 888776653 2368999999998 554 49999
Q ss_pred EecchhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC--------------Cc
Q 018775 249 FMKWILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT--------------GG 313 (350)
Q Consensus 249 ~~~~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 313 (350)
++..++|++++. +...+|++++++|+ |||++++.+......... . .......+......+ ..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVEFGQNWHLKL-Y-RKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCTTSHH-H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEECCcchhHHH-H-HHHhhhhccchhhhcceEecccccCCcceee
Confidence 999999999764 46689999999999 999999998765432210 0 000000000000000 01
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEE
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
..++.++|.++|+++||+++++..
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEe
Confidence 356899999999999999998864
No 61
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.67 E-value=3.1e-16 Score=136.68 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=113.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecc-hhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKW-ILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh~ 256 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999987 468999999 888887765 2279999999987 554 499999998 9999
Q ss_pred CCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCC----CCCcc----cccc-----------hhhhhhHhhhcC-----
Q 018775 257 WDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQED----GNNIF----GDMG-----------LVFDLVMFAHTT----- 311 (350)
Q Consensus 257 ~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~----~~~~~----~~~~-----------~~~~~~~~~~~~----- 311 (350)
+++ ++...+|++++++|+ |||++++........ ....+ .... ....+.++...+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLK-EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred cCCHHHHHHHHHHHHHhcC-CCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 853 677899999999999 999999733221100 00000 0000 000000000001
Q ss_pred -----CcccCCHHHHHHHHHhcCCceeEEEEc--------CCceeEEEEeeC
Q 018775 312 -----GGKERTEQEWMKLLEQGGFHRCKIISM--------PALYSIIEAYPQ 350 (350)
Q Consensus 312 -----~~~~~s~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~~ 350 (350)
+.+.++.++|.++|+++||+++++... .....++.|+|.
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 013458999999999999999999754 224557888873
No 62
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.67 E-value=5.7e-16 Score=130.64 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D 246 (350)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 344444 456779999999999999999987 568999999 888887764 2379999999988 544 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..++||+++++...++++++++|+ |||++++.+.........+ .+....++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHHHhc
Confidence 9999999999998788899999999999 9999999887665432110 01123457899999998
Q ss_pred hcCCceeEEEE
Q 018775 327 QGGFHRCKIIS 337 (350)
Q Consensus 327 ~aGf~~~~~~~ 337 (350)
+ |++++...
T Consensus 164 ~--f~~~~~~~ 172 (199)
T 2xvm_A 164 G--WERVKYNE 172 (199)
T ss_dssp T--SEEEEEEC
T ss_pred C--CeEEEecc
Confidence 7 99888754
No 63
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=8e-16 Score=129.05 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=111.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEec-chhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMK-WILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~-~vlh~~~ 258 (350)
+++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 56789999999999999999987 568999999 888887765 4579999999998 554 49999998 8999998
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+++...+|++++++|+ |||++++.... ...++.+++.++++++||+++++...
T Consensus 123 ~~~~~~~l~~~~~~l~-~~G~l~~~~~~--------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 123 EDGREPALANIHRALG-ADGRAVIGFGA--------------------------GRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp HHHHHHHHHHHHHHEE-EEEEEEEEEET--------------------------TSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred hHHHHHHHHHHHHHhC-CCCEEEEEeCC--------------------------CCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 8888899999999999 99999985421 12246899999999999999988654
Q ss_pred --------CCceeEEEEee
Q 018775 339 --------PALYSIIEAYP 349 (350)
Q Consensus 339 --------~~~~~vi~~~~ 349 (350)
.....++.++|
T Consensus 176 ~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 176 WDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp TTCCBCCTTCSEEEEEEEE
T ss_pred cccCcCCCCCcEEEEEEec
Confidence 23355677766
No 64
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=2.7e-16 Score=140.23 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=112.4
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
.+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++
T Consensus 48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 4455555 56788999999999999999998 7789999999 888887765 4679999999998 555 4999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh------hcCCcccCCHHHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA------HTTGGKERTEQEWMKL 324 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~e~~~l 324 (350)
..++|++++. ..+|++++++|+ |||++++......... .. ...+....... .......++.++|.++
T Consensus 124 ~~~l~~~~d~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 124 NAMLHWVKEP--EAAIASIHQALK-SGGRFVAEFGGKGNIK--YI--LEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp ESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEECTTTTH--HH--HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred cchhhhCcCH--HHHHHHHHHhcC-CCcEEEEEecCCcchH--HH--HHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 9999998865 478999999999 9999998664322210 00 00111110000 0000234589999999
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
|+++||+++++...
T Consensus 197 l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999887654
No 65
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.66 E-value=5.1e-16 Score=137.94 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=114.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hh------HhhhCCC-------CCCeEEEecc-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PH------VVATAPV-------CEGIFHVGGD- 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~~i~~~~~d- 237 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..+++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34566666 6788999999999999999999985 7789999999 54 6766653 2689999998
Q ss_pred CCC---CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc-chhhhhhHhhh--
Q 018775 238 MFD---AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM-GLVFDLVMFAH-- 309 (350)
Q Consensus 238 ~~~---~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~-- 309 (350)
+.. +++ .||+|++..++||+++.+ .+++.++.+++ |||++++.+...+.......... ..+....+...
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAA-VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTT-TCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhC-CCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 443 333 499999999999998875 47888888888 89999999988765432110000 00000001000
Q ss_pred --cC-CcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 --TT-GGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 --~~-~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.. ....++.++|.++++++||+++++..+
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 013568999999999999999988765
No 66
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=5.9e-16 Score=136.19 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=110.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
.+++.+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4555565 56788999999999999999999999999999999 888888765 5689999999988 522 4999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH----hhhc-----CCcccCCHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM----FAHT-----TGGKERTEQEW 321 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~s~~e~ 321 (350)
..++|++++. ..+|++++++|+ |||++++.......... ...+..+.. .... .+...++.++|
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLE-SGGVLAVQMPDNLQEPT-----HIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY 173 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEE-EEEEEEEEEECCTTSHH-----HHHHHHHHHHSTTGGGC-------CCCCCHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcC-CCeEEEEEeCCCCCcHH-----HHHHHHHhcCcchHHHhccccccccCCCCHHHH
Confidence 9999998654 578999999999 99999998753221100 000111100 0000 11345689999
Q ss_pred HHHHHhcCCce
Q 018775 322 MKLLEQGGFHR 332 (350)
Q Consensus 322 ~~ll~~aGf~~ 332 (350)
.++|+++||.+
T Consensus 174 ~~~l~~aGf~v 184 (259)
T 2p35_A 174 FNALSPKSSRV 184 (259)
T ss_dssp HHHHGGGEEEE
T ss_pred HHHHHhcCCce
Confidence 99999999974
No 67
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.65 E-value=6.4e-17 Score=145.26 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=106.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCC-----------------------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVC----------------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 228 (350)
.++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999 8888766430
Q ss_pred -----------------------------CCeEEEeccCCCCC--------CCccEEEecchhccC----ChHHHHHHHH
Q 018775 229 -----------------------------EGIFHVGGDMFDAI--------PKADAVFMKWILHDW----DDEACVKILK 267 (350)
Q Consensus 229 -----------------------------~~i~~~~~d~~~~~--------p~~D~i~~~~vlh~~----~~~~~~~~L~ 267 (350)
.+|+|+.+|+.... +.||+|++..+++++ +++....+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 249999999999665 6678889999
Q ss_pred HHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh--cCCceeEEEEc
Q 018775 268 NCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ--GGFHRCKIISM 338 (350)
Q Consensus 268 ~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~--aGf~~~~~~~~ 338 (350)
+++++|+ |||+|++.......... ......... .... ......+++.++|.+ +||+.++++..
T Consensus 205 ~~~~~Lk-pGG~lil~~~~~~~y~~-----~~~~~~~~~-~~~~-~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLR-PGGILVLEPQPWSSYGK-----RKTLTETIY-KNYY-RIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEE-EEEEEEEECCCHHHHHT-----TTTSCHHHH-HHHH-HCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhC-CCcEEEEecCCchhhhh-----hhcccHHHH-hhhh-cEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999 99999885332221100 000000000 0111 223347899999999 99998887654
No 68
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.65 E-value=7.3e-16 Score=134.23 Aligned_cols=161 Identities=18% Similarity=0.263 Sum_probs=112.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecc-hhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKW-ILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh 255 (350)
.++.+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34689999999999999998886 68999999 888887764 3579999999987 554 499999986 999
Q ss_pred cC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecC---CCCC-cc----c-------------ccchhhhhhHhhhcCC-
Q 018775 256 DW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQE---DGNN-IF----G-------------DMGLVFDLVMFAHTTG- 312 (350)
Q Consensus 256 ~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~---~~~~-~~----~-------------~~~~~~~~~~~~~~~~- 312 (350)
|+ +.++...+|++++++|+ |||++++.-..... .... .+ . .......+.+....++
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLT-DGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDG 187 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEE-EEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTS
T ss_pred hcCCHHHHHHHHHHHHHhcC-CCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCC
Confidence 98 45677899999999999 99999873221100 0000 00 0 0000000111100010
Q ss_pred ----------cccCCHHHHHHHHHhcCCceeEEEEc--------CCceeEEEEee
Q 018775 313 ----------GKERTEQEWMKLLEQGGFHRCKIISM--------PALYSIIEAYP 349 (350)
Q Consensus 313 ----------~~~~s~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~ 349 (350)
.+.++.+++.++|+++||+++++... .....++.|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 188 RYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp CEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred ceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 13469999999999999999999764 12355888887
No 69
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.64 E-value=9.5e-16 Score=133.90 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=109.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC-------CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP-------KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p-------~~D~i~~~ 251 (350)
..++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999987 7999999 888887754 4589999999998 332 28999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc-c----cccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI-F----GDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
.++|++++++...+|++++++|+ |||++++.+...++..... . ..........+..... ...++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLG-KQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIR-PGIFTAEDIELYF- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCC-CCCCCHHHHHHHC-
T ss_pred chhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCC-CCccCHHHHHHHh-
Confidence 99999998888899999999999 9999999987654311000 0 0000000001111111 1235899999999
Q ss_pred hcCCceeEEEEc
Q 018775 327 QGGFHRCKIISM 338 (350)
Q Consensus 327 ~aGf~~~~~~~~ 338 (350)
+||+++....+
T Consensus 209 -aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 -PDFEILSQGEG 219 (245)
T ss_dssp -TTEEEEEEECC
T ss_pred -CCCEEEecccc
Confidence 99999886543
No 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.64 E-value=2.5e-16 Score=135.49 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-----C-CC-cc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-----I-PK-AD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-----~-p~-~D 246 (350)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. . .. ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444444 445689999999999999999987 568999999 88998887667788888876651 1 23 99
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-----CcccCCHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-----GGKERTEQEW 321 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~e~ 321 (350)
+|++..++| .++ ...+|++++++|+ |||++++.+..........+.. .+.......... ....++.++|
T Consensus 119 ~v~~~~~l~-~~~--~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 119 LICANFALL-HQD--IIELLSAMRTLLV-PGGALVIQTLHPWSVADGDYQD--GWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp EEEEESCCC-SSC--CHHHHHHHHHTEE-EEEEEEEEECCTTTTCTTCCSC--EEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred EEEECchhh-hhh--HHHHHHHHHHHhC-CCeEEEEEecCccccCcccccc--ccchhhhhccccCcccceEEEecHHHH
Confidence 999999999 444 3578999999999 9999999886654433211100 000000000000 0234589999
Q ss_pred HHHHHhcCCceeEEEEc--CC----ceeEEEEee
Q 018775 322 MKLLEQGGFHRCKIISM--PA----LYSIIEAYP 349 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~--~~----~~~vi~~~~ 349 (350)
.++|+++||+++++... +. ...++.++|
T Consensus 193 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp HHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred HHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 99999999999998763 11 134666665
No 71
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.64 E-value=4.8e-16 Score=138.97 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p- 243 (350)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 3444454 34689999999999999999987 678999999 888887764 2689999999988 4 33
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------hcCCccc
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------HTTGGKE 315 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 315 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+........... ....+...... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLR-PGGVLSLMFYNAHGLLMHNM--VAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEE-EEEEEEEEEEBHHHHHHHHH--HTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcC-CCeEEEEEEeCCchHHHHHH--HhcCHHHHhhhccccccccCCCCCC
Confidence 49999999999999875 578999999999 99999998765432110000 00000000000 0111245
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
++.+++.++|+++||+++++..+..
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCHHHHHHHHHHCCCceeeeeeEEE
Confidence 6899999999999999999887643
No 72
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.63 E-value=1.4e-15 Score=130.56 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=102.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChHHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~ 262 (350)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++ .||+|++..++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 88998 8888887744 79999999987 554 49999999999998765
Q ss_pred HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-H-hhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 263 VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-M-FAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
..+|++++++|+ |||.+++.+...... ....+... . .....+...++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~-pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILK-KGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEE-EEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcC-CCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 578999999999 999999977543211 00000000 0 00011134568999999999999999988664
No 73
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.63 E-value=2.6e-16 Score=139.15 Aligned_cols=151 Identities=15% Similarity=0.025 Sum_probs=106.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C------------------------------ 228 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------------------------------ 228 (350)
..++.+|||||||+|.++..++.... .+++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 45678999999999988776555432 26899999 888886542 0
Q ss_pred -CCeE-EEeccCCC--CC-----CCccEEEecchhccCC--hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc
Q 018775 229 -EGIF-HVGGDMFD--AI-----PKADAVFMKWILHDWD--DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD 297 (350)
Q Consensus 229 -~~i~-~~~~d~~~--~~-----p~~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~ 297 (350)
.++. ++.+|+.+ ++ +.||+|+++.+||+.. .++...+|++++++|| |||+|++.+...... +
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK-PGG~li~~~~~~~~~----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLRLPS----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCE----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEeecCcc----c--
Confidence 1243 88999987 22 3599999999999853 3567789999999999 999999986532110 0
Q ss_pred cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC----------CceeEEEEee
Q 018775 298 MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP----------ALYSIIEAYP 349 (350)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~~~~ 349 (350)
... ..... ...++.+++.++|+++||+++++...+ ....++.|+|
T Consensus 205 ---~~g---~~~~~-~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K 259 (263)
T 2a14_A 205 ---MVG---KREFS-CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 259 (263)
T ss_dssp ---EET---TEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred ---eeC---CeEee-ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence 000 00011 223589999999999999999887643 1345677877
No 74
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.62 E-value=8.3e-16 Score=135.66 Aligned_cols=151 Identities=15% Similarity=0.054 Sum_probs=110.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CC------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CE------------------------------ 229 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------ 229 (350)
..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 35678999999999999998888765 58999999 888887753 11
Q ss_pred --Ce-EEEeccCCC-CC------CCccEEEecchhccCCh--HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc
Q 018775 230 --GI-FHVGGDMFD-AI------PKADAVFMKWILHDWDD--EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD 297 (350)
Q Consensus 230 --~i-~~~~~d~~~-~~------p~~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~ 297 (350)
++ +++.+|+.+ +. ..||+|++..++|+++. ++...+|++++++|+ |||+|++.+..... . +
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~---~-~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDALKSS---Y-Y-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCC---E-E--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEecCCCc---e-E--
Confidence 27 899999987 22 24999999999995433 367789999999999 99999998843221 0 0
Q ss_pred cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC----------ceeEEEEee
Q 018775 298 MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA----------LYSIIEAYP 349 (350)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~----------~~~vi~~~~ 349 (350)
...+ .... ....+.+++.++|+++||+++++...+. ...++.|+|
T Consensus 206 --~~~~----~~~~-~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K 260 (265)
T 2i62_A 206 --MIGE----QKFS-SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK 260 (265)
T ss_dssp --EETT----EEEE-CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred --EcCC----cccc-ccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence 0000 0001 2345789999999999999999876541 345677776
No 75
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.62 E-value=2.3e-15 Score=131.93 Aligned_cols=132 Identities=8% Similarity=-0.061 Sum_probs=105.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------------------CCCeEEEeccCCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------------------CEGIFHVGGDMFD 240 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~ 240 (350)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 568999999 888887632 2579999999998
Q ss_pred -CC---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC
Q 018775 241 -AI---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 241 -~~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (350)
+. ..||+|++..++|++++++...++++++++|+ |||+++++....+..... .+ ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk-pGG~l~l~~~~~~~~~~~----------------g~-~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLR-KEFQYLVAVLSYDPTKHA----------------GP-PFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEEEECCTTSCC----------------CS-SCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC-CCeEEEEEEEecCCccCC----------------CC-CCCC
Confidence 43 35999999999999998888899999999999 999998766554321100 01 1235
Q ss_pred CHHHHHHHHHhcCCceeEEEE
Q 018775 317 TEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+.+++.++|++ +|+++.+..
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999988 599877654
No 76
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.61 E-value=2.4e-15 Score=132.50 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=104.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567889999999999999999987 568999999 888877653 4689999999987 654 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC---CcccCCHHHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT---GGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~e~~~ll~~aGf~ 331 (350)
|++++. ..++++++++|+ |||++++. ...++... .......+..+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~-pgG~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLK-PGGALLEG-WDQAEASP-EWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEE-EEEEEEEE-EEEECCCH-HHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCC-CCcEEEEE-ecCCCccH-HHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 998764 578999999999 99999987 22221110 000000111111111011 12345789999999999999
Q ss_pred eeEEE
Q 018775 332 RCKII 336 (350)
Q Consensus 332 ~~~~~ 336 (350)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 87653
No 77
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.60 E-value=3.5e-15 Score=128.53 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=108.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADA 247 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~ 247 (350)
..+++.++ .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++ .||+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCE
Confidence 34444443 46789999999999999999988 4 89999999 8888887742 24788899875 333 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh---------hcCCcccCCH
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA---------HTTGGKERTE 318 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~ 318 (350)
|++..++||+++. ..+|++++++|+ |||.+++..+...... ......... ...+...++.
T Consensus 97 v~~~~~l~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (230)
T 3cc8_A 97 VIFGDVLEHLFDP--WAVIEKVKPYIK-QNGVILASIPNVSHIS--------VLAPLLAGNWTYTEYGLLDKTHIRFFTF 165 (230)
T ss_dssp EEEESCGGGSSCH--HHHHHHTGGGEE-EEEEEEEEEECTTSHH--------HHHHHHTTCCCCBSSSTTBTTCCCCCCH
T ss_pred EEECChhhhcCCH--HHHHHHHHHHcC-CCCEEEEEeCCcchHH--------HHHHHhcCCceeccCCCCCcceEEEecH
Confidence 9999999998876 488999999999 9999999765432110 000000000 0011245689
Q ss_pred HHHHHHHHhcCCceeEEEEc
Q 018775 319 QEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~ 338 (350)
++|.++++++||+++++...
T Consensus 166 ~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 166 NEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEec
Confidence 99999999999999988775
No 78
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.60 E-value=7.6e-15 Score=125.50 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=102.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEec
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMK 251 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~ 251 (350)
.+++.+. ...++.+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3444443 13467899999999999998773 57899998322 57789999988 654 39999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.++|+ + +...+|++++++|+ |||++++.+... ...+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~-~gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLK-PGGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEE-EEEEEEEEECGG--------------------------GCSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCC-CCeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCCCE
Confidence 99984 3 34688999999999 999999986321 111689999999999999
Q ss_pred eeEEEEcCCceeEEEEee
Q 018775 332 RCKIISMPALYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~~~~vi~~~~ 349 (350)
++++...++.+.++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 998777677778888877
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.59 E-value=8e-15 Score=131.98 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=103.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-CC--------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-AI--------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~~--------p~~ 245 (350)
.++.+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578999999999999999999987 8899999999 888887754 4689999999998 43 249
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh--hcCCccc--CCHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA--HTTGGKE--RTEQEW 321 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~s~~e~ 321 (350)
|+|++..++|++ +...++++++++|+ |||.|++.+...+.....+ .....+.-.... ..+ ... ...+.+
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~w~~p~~~~~ 187 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLR-KDGTIAIWGYADPIFPDYP--EFDDLMIEVPYGKQGLG-PYWEQPGRSRL 187 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEE-EEEEEEEEEEEEEECTTCG--GGTTHHHHHHHCTTTTG-GGSCTTHHHHH
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcC-CCcEEEEEecCCccccCcH--HHHHHHHHhccCccccc-chhhchhhHHH
Confidence 999999999998 35689999999999 9999999665543222111 011111111110 011 111 346677
Q ss_pred HHHHHhcCCc
Q 018775 322 MKLLEQGGFH 331 (350)
Q Consensus 322 ~~ll~~aGf~ 331 (350)
.++++++||.
T Consensus 188 ~~~l~~~gfp 197 (299)
T 3g5t_A 188 RNMLKDSHLD 197 (299)
T ss_dssp HTTTTTCCCC
T ss_pred HHhhhccCCC
Confidence 9999999993
No 80
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.59 E-value=3.7e-15 Score=130.88 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=85.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~ 261 (350)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+|+++.+|+.+ ++++ ||+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 46799999999999999999875 47899999 9999999988899999999998 7763 9999999999987643
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+++++++++|| |||+|+++....+
T Consensus 116 --~~~~e~~rvLk-pgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 --RFWAELRRVAR-PGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHEE-EEEEEEEEEECCC
T ss_pred --HHHHHHHHHcC-CCCEEEEEECCCC
Confidence 67999999999 9999999876543
No 81
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.58 E-value=6.2e-15 Score=132.33 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=109.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-C--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-P--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p--~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 4568999999 888887764 2479999999998 55 3 399999999
Q ss_pred hhcc--CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC---------CCc----c------cc-cchhhhhhHhhhc
Q 018775 253 ILHD--WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG---------NNI----F------GD-MGLVFDLVMFAHT 310 (350)
Q Consensus 253 vlh~--~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~---------~~~----~------~~-~~~~~~~~~~~~~ 310 (350)
++|+ .+.++...+|++++++|+ |||++++..+...... ... + .. ....+.+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 9998 667778899999999999 9999999775432100 000 0 00 0000000000000
Q ss_pred C--CcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 311 T--GGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 311 ~--~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
. ....++.++|.++++++||+++++..++
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0 0234589999999999999999987653
No 82
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.58 E-value=1.3e-14 Score=129.79 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=108.1
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccE
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADA 247 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~ 247 (350)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 112 ~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 112 VVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 344444 346889999999999999999987 568999999 888887764 2389999999998 444 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
|++..++||+++++...++++++++|+ |||.++++..........+ ... ...++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~--------------~~~-~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVAAMSTDDVPCP--------------LPF-SFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEEBCCSSSCCS--------------SCC-SCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCCCCCC--------------CCc-cccCCHHHHHHHhcC
Confidence 999999999999888999999999999 9999888776554432210 001 234467888888865
Q ss_pred cCCceeEEE
Q 018775 328 GGFHRCKII 336 (350)
Q Consensus 328 aGf~~~~~~ 336 (350)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
No 83
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.57 E-value=3.3e-15 Score=127.01 Aligned_cols=149 Identities=9% Similarity=-0.002 Sum_probs=108.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
..++.+|||||||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999986555544 5679999999 888887764 3679999999988 654 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc-chhhhhhHhhhcC-CcccCCHHHHHHHHHhcCCce
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM-GLVFDLVMFAHTT-GGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~e~~~ll~~aGf~~ 332 (350)
||++.++...++++++++|+ |||++++.+...++......... ...+.. .....+ ....++.+++.++|+++||..
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLK-PGGLACINFLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcC-CCcEEEEEEecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99987888899999999999 99999998887655332100000 000000 000000 024558999999999999876
Q ss_pred eEE
Q 018775 333 CKI 335 (350)
Q Consensus 333 ~~~ 335 (350)
.+.
T Consensus 178 ~~~ 180 (209)
T 2p8j_A 178 KED 180 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 84
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.57 E-value=8.8e-15 Score=131.26 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=96.1
Q ss_pred CCcceEEEecCCchHHHHH----HHHHCCCCcE--EEecc-hhHhhhCCC-------CCCeEE--EeccCCC-C------
Q 018775 185 DSIQSLADVGGGTGGALAE----IVKSYPHIKG--INFDL-PHVVATAPV-------CEGIFH--VGGDMFD-A------ 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~~-~------ 241 (350)
.++.+|||||||+|.++.. ++.++|+.++ +++|. ++|++.+++ ..++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4578999999999986654 4556688754 99999 888886653 134444 4555443 2
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC---CcccC
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT---GGKER 316 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 316 (350)
++ .||+|++.++|||+++. .+.|++++++|| |||++++.+.... . . ....+.- .....+ ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~--~--~---~~~~~~~-~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLG-TNAKMLIIVVSGS--S--G---WDKLWKK-YGSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEE-EEEEEEEEEECTT--S--H---HHHHHHH-HGGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcC-CCcEEEEEEecCC--c--c---HHHHHHH-HHHhccCCCcccCC
Confidence 22 49999999999999876 468999999999 9999999864321 1 0 0011111 111111 12456
Q ss_pred CHHHHHHHHHhcCCceeEE
Q 018775 317 TEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~ 335 (350)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
No 85
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.57 E-value=1.2e-14 Score=136.94 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=108.4
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCC-----C-CC--
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMF-----D-AI-- 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~-----~-~~-- 242 (350)
.+..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+. . ++
T Consensus 95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 3456667776 677899999999999999999986 458999999 8888888753 2333332222 1 22
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
..||+|++.+++||+++. ..+|++++++|+ |||++++......... ....+... ...+...++.++|.
T Consensus 170 ~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~--------~~~~~~~~-~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYV--QSVLEGVDALLA-PDGVFVFEDPYLGDIV--------AKTSFDQI-FDEHFFLFSATSVQ 237 (416)
T ss_dssp CCEEEEEEESCGGGCTTH--HHHHHHHHHHEE-EEEEEEEEEECHHHHH--------HHTCGGGC-STTCCEECCHHHHH
T ss_pred CCEEEEEECChHHhcCCH--HHHHHHHHHHcC-CCeEEEEEeCChHHhh--------hhcchhhh-hhhhhhcCCHHHHH
Confidence 249999999999999854 688999999999 9999998654432110 00000000 01224557899999
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998865
No 86
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.55 E-value=2.4e-14 Score=125.27 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=104.0
Q ss_pred CCcceEEEecCCc--hHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-----C----Cc
Q 018775 185 DSIQSLADVGGGT--GGALAEIVK-SYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI-----P----KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-----p----~~ 245 (350)
.+..+|||||||+ +..+..+++ ..|+.+++++|. |.|++.++. ..+++|+.+|+.++. | .+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 444555554 589999999999 999998875 247999999998731 1 25
Q ss_pred c-----EEEecchhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 246 D-----AVFMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 246 D-----~i~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
| +++++.+|||+++.+ ...+|++++++|+ |||+|++.+...+.... ....+.+.......+ ...||.+
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~-PGG~Lvls~~~~d~~p~----~~~~~~~~~~~~g~p-~~~rs~~ 230 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP-SGSYLAMSIGTAEFAPQ----EVGRVAREYAARNMP-MRLRTHA 230 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC-TTCEEEEEEECCTTSHH----HHHHHHHHHHHTTCC-CCCCCHH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC-CCcEEEEEeccCCCCHH----HHHHHHHHHHhcCCC-CccCCHH
Confidence 5 688999999999876 5789999999999 99999998876542211 011222222222223 4568999
Q ss_pred HHHHHHHhcCCceeE
Q 018775 320 EWMKLLEQGGFHRCK 334 (350)
Q Consensus 320 e~~~ll~~aGf~~~~ 334 (350)
|+..+|. ||..++
T Consensus 231 ei~~~f~--Glelve 243 (277)
T 3giw_A 231 EAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTTT--TSEECT
T ss_pred HHHHHhC--CCcccC
Confidence 9999995 998655
No 87
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.54 E-value=3.2e-14 Score=123.08 Aligned_cols=142 Identities=17% Similarity=0.228 Sum_probs=104.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC----CCCCCeEEEeccCCCC-----C-CCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA----PVCEGIFHVGGDMFDA-----I-PKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~-p~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++.++..+++++|. +.+++.+ +...++.++.+|+.++ + ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 56788999999999999999999988789999999 8777654 3357899999999862 2 2499998
Q ss_pred hhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 253 ILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 253 vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
|++++. ....++++++++|+ |||++++. .........+ . ......+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~-~~~~~~~~~~--------~---------~~~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLK-KGGYGMIA-IKARSIDVTK--------D---------PKEIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEE-EEEEEEEE-EEGGGTCSSS--------C---------HHHHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCC-CCcEEEEE-EecCCCCCCC--------C---------HHHhhHHHHH-HHHHCCCE
Confidence 555443 34567999999999 99999997 2211111100 0 0011137777 89999999
Q ss_pred eeEEEEcCCc---eeEEEEeeC
Q 018775 332 RCKIISMPAL---YSIIEAYPQ 350 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~~ 350 (350)
.+++..+..+ +.++.++|.
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEEC
T ss_pred EEEEEccCCCccceEEEEEEeC
Confidence 9999887654 677777763
No 88
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.54 E-value=6.4e-14 Score=122.68 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=85.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 3344444 456789999999999999999986 568999999 888887764 3479999999988 554 499
Q ss_pred EEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++. ..+++++.++...+|++++++|+ |||.+++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 99986 56677777788899999999999 99998864
No 89
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.54 E-value=4.3e-14 Score=119.51 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=101.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
++ +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++. ++|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 45 9999999999999999886 568999999 888887765 2489999999998 554 49999985 345
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
++.++...+|++++++|+ |||++++.+......... ... .... ...++.+++.++|+ ||+++++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~--------~~~---~~~~-~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLK-PGGVFILEGFAPEQLQYN--------TGG---PKDL-DLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCC-SSEEEEEEEECTTTGGGT--------SCC---SSSG-GGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcC-CCcEEEEEEeccccccCC--------CCC---CCcc-eeecCHHHHHHHhc--CceEEEEE
Confidence 677778899999999999 999999987654332100 000 0001 24568999999999 99998875
Q ss_pred Ec
Q 018775 337 SM 338 (350)
Q Consensus 337 ~~ 338 (350)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 90
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.54 E-value=5.3e-15 Score=132.51 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=97.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--C---------------------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--C--------------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~--------------------------------- 228 (350)
.++.+|||||||+|.+.. ++...+..+++++|+ +.+++.+++ .
T Consensus 70 ~~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 367899999999999543 343334569999999 888876543 0
Q ss_pred -CCeEEEeccCCC--C-----CCC--ccEEEecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc
Q 018775 229 -EGIFHVGGDMFD--A-----IPK--ADAVFMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG 296 (350)
Q Consensus 229 -~~i~~~~~d~~~--~-----~p~--~D~i~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~ 296 (350)
..++++.+|+.+ + +++ ||+|++..+||+++.+ +...+|++++++|+ |||+|++.+.....
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~~~~~------- 220 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEES------- 220 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCC-------
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCcc-------
Confidence 014566678876 2 222 9999999999996533 67789999999999 99999998633211
Q ss_pred ccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 297 DMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.....+ .... ...++.++|.++|+++||+++++...
T Consensus 221 -~~~~~~----~~~~-~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 221 -WYLAGE----ARLT-VVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -EEEETT----EEEE-CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eEEcCC----eeee-eccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 000000 0011 23458999999999999999887654
No 91
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.54 E-value=8.5e-15 Score=131.28 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=84.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC-C---CC--Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD-A---IP--KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~p--~~D 246 (350)
..++.+|||||||+|..+..+++.. .+++++|+ +.+++.+++ ..++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 3467899999999999999999984 48999999 888887743 2578899999887 5 44 499
Q ss_pred EEEec-chhccCCh-----HHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMK-WILHDWDD-----EACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~-~vlh~~~~-----~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++. +++||+++ ++...+|++++++|+ |||++++....
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 99998 99999988 677899999999999 99999987643
No 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.54 E-value=1.1e-13 Score=117.43 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=99.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 67789999999999999999999999999999999 888887764 368999999997732 45
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++...++ +...++++++++|+ |||++++...... +.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lk-pgG~l~~~~~~~~----------------------------~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLK-SEGVIVLNAVTLD----------------------------TLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCC-TTCEEEEEECBHH----------------------------HHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcC-CCeEEEEEecccc----------------------------cHHHHHHH
Confidence 99999988776 34578999999999 9999998542210 25778889
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++++|| .+++
T Consensus 155 l~~~g~-~~~~ 164 (204)
T 3e05_A 155 LEDHGY-MVEV 164 (204)
T ss_dssp HHHTTC-EEEE
T ss_pred HHHCCC-ceeE
Confidence 999998 4443
No 93
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.53 E-value=5.8e-15 Score=126.30 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5678899999999999999999885 48999999 888877654 4589999999998 422 4999999999999
Q ss_pred CCh-HHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 257 WDD-EACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 257 ~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+++ +....+|++++++|+ |||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLA-PGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCEEEEEecC
Confidence 986 456689999999999 99999986653
No 94
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.52 E-value=5.5e-14 Score=119.24 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=105.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-CCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI-PKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-p~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4678999999999999999776 46679999999 888887764 223999999998843 35999999887775
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++++++++|+ |||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLN-EDGQVIFSGIDYL----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcC-CCCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceEEee
Confidence 4678999999999 9999998543321 26788899999999999988
Q ss_pred EcCCceeEEEEee
Q 018775 337 SMPALYSIIEAYP 349 (350)
Q Consensus 337 ~~~~~~~vi~~~~ 349 (350)
..+....++.-+|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8777777766554
No 95
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.51 E-value=2e-13 Score=121.44 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=107.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC--CCccEEEec----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--PKADAVFMK---- 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--p~~D~i~~~---- 251 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++. ..||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 888887764 247999999999854 259999997
Q ss_pred ---------chhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 252 ---------WILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 252 ---------~vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
.+++|.|. .....+++++++.|+ |||++++.. +
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~--------------------------~- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEH--------------------------G- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC--------------------------C-
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE--------------------------C-
Confidence 35554442 345789999999999 999998741 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
..+.+++.++++++||+.++++. ..+...++.+++
T Consensus 240 --~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 --WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp --SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred --chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 11368899999999999888766 466677777765
No 96
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.50 E-value=2.7e-14 Score=121.64 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=91.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCC-------CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAI-------PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~-------p~~D~i~~~ 251 (350)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+++ ..||+|+++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5788999999999999999999999999999999 889988875 116889999988732 359999995
Q ss_pred chh------ccCChHHH------------------HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHh
Q 018775 252 WIL------HDWDDEAC------------------VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMF 307 (350)
Q Consensus 252 ~vl------h~~~~~~~------------------~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 307 (350)
... ++++.+.. ..++++++++|+ |||++++++..
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~--------------------- 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA-RGRAGVFLEVG--------------------- 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBC-SSSEEEEEECT---------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc-CCCeEEEEEEC---------------------
Confidence 333 33332222 688999999999 99996654421
Q ss_pred hhcCCcccCCHHHHHHHHH--hcCCceeEEEEc-CCceeEEEEee
Q 018775 308 AHTTGGKERTEQEWMKLLE--QGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 308 ~~~~~~~~~s~~e~~~ll~--~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
....+++.++++ +.||..+++.+. .+...++.++|
T Consensus 167 -------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 167 -------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTR 204 (215)
T ss_dssp -------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEE
T ss_pred -------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEE
Confidence 112577888899 999999888775 44556666665
No 97
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.50 E-value=3.3e-13 Score=111.09 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=100.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC--CccEEEecchhccCChH-
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP--KADAVFMKWILHDWDDE- 260 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~~- 260 (350)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 346699999999999999999986 8999999 888887 5679999999998654 49999998888865443
Q ss_pred ------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 261 ------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 261 ------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l--pgG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV--TVGMLYLLVIEA----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC--CSSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC--CCCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457888888888 799998866211 1368889999999999988
Q ss_pred EEEc-CCceeEEEEe
Q 018775 335 IISM-PALYSIIEAY 348 (350)
Q Consensus 335 ~~~~-~~~~~vi~~~ 348 (350)
+... .+...++..+
T Consensus 146 ~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 146 LKVRKILGETVYIIK 160 (170)
T ss_dssp EEEEECSSSEEEEEE
T ss_pred EEeeccCCceEEEEE
Confidence 8765 3334444433
No 98
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.50 E-value=9.8e-14 Score=118.86 Aligned_cols=142 Identities=8% Similarity=0.027 Sum_probs=96.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh----CCC------CCCeEEEeccCCC-CCCC-ccEEE-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT----APV------CEGIFHVGGDMFD-AIPK-ADAVF- 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~i~~~~~d~~~-~~p~-~D~i~- 249 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..+++++.+|+.+ +++. .|.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 56788999999999999999999999999999999 776664 221 3489999999998 5541 25554
Q ss_pred --ecchhc--cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-CcccCCHHHHHHH
Q 018775 250 --MKWILH--DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-GGKERTEQEWMKL 324 (350)
Q Consensus 250 --~~~vlh--~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~l 324 (350)
....+| |+++. ..+|++++++|+ |||++++......-.... . ... ..+ ....+..+++.++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~---~~~---~~~~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCR-PGASFLVALNLHAWRPSV-----P---EVG---EHPEPTPDSADEWLAPR 170 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEE-EEEEEEEEEEGGGBTTBC-----G---GGT---TCCCCCHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcC-CCcEEEEEeccccccccc-----c---ccc---cCCccchHHHHHHHHHH
Confidence 223332 44433 578999999999 999999833221111100 0 000 000 0111234568889
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||++.++..+.
T Consensus 171 l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 171 YAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCCceeeeccc
Confidence 999999999887653
No 99
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.48 E-value=7.1e-14 Score=128.27 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=91.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEecc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGD 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 237 (350)
..+++.+. ..++.+|||||||+|.+++.++...+..+++++|+ +.+++.|+. ..+|+++.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555565 77889999999999999999998887667999999 776665542 2689999999
Q ss_pred CCC-CC----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCC
Q 018775 238 MFD-AI----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN 292 (350)
Q Consensus 238 ~~~-~~----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~ 292 (350)
+.+ ++ +.+|+|+++++++ .++....|++++++|+ |||+|++.|.+.+.+..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F---~pdl~~aL~Ei~RvLK-PGGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKERFANMK-EGGRIVSSKPFAPLNFR 296 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC---CHHHHHHHHHHHTTSC-TTCEEEESSCSSCTTCC
T ss_pred ccCCccccccCCccEEEEccccc---CchHHHHHHHHHHcCC-CCcEEEEeecccCCCCC
Confidence 998 55 3599999988775 2455678899999999 99999999998887553
No 100
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.48 E-value=7.2e-14 Score=120.39 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hh-HhhhC---CC------CCCeEEEeccCCC-CCCCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PH-VVATA---PV------CEGIFHVGGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~------~~~i~~~~~d~~~-~~p~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..++++.|+.+++++|+ ++ +++.| ++ ..+++++.+|+.+ +...+|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999998 34 44443 43 3579999999887 322246665555
Q ss_pred hhccCChH------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 253 ILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 253 vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+.+.|+.. +...+|++++++|| |||++++...........++ ..... .... ......+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~----~~~~~---~~~~-~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAK-KEAHFEFVTTYSDSYEEAEI----KKRGL---PLLS-KAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEE-EEEEEEEEECCCC---------------------CC-HHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcC-CCcEEEEEEeccccchhchh----hhcCC---CCCC-hhhcchHHHHHHHH
Confidence 44444321 11368999999999 99999984433222110000 00000 0000 00111235999999
Q ss_pred hcCCceeEEEEcC
Q 018775 327 QGGFHRCKIISMP 339 (350)
Q Consensus 327 ~aGf~~~~~~~~~ 339 (350)
++||++..+...+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999998887654
No 101
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.48 E-value=2.1e-13 Score=114.02 Aligned_cols=141 Identities=16% Similarity=0.246 Sum_probs=108.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CC--CeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CE--GIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~~p- 243 (350)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++++.+|+.++.+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34455555 567889999999999999999987 679999999 888877664 22 49999999988543
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++...+|+ ..+....++++++++|+ |||++++...... ...++.
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~ 167 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLK-DNGEIWVVIQTKQ----------------------------GAKSLA 167 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEE-EEEEEEEEEESTH----------------------------HHHHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcC-CCCEEEEEECCCC----------------------------ChHHHH
Confidence 4999999888774 45567789999999999 9999998653221 124566
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.+++. |..+++......+.++.++|
T Consensus 168 ~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 168 KYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHH-hcceEEEecCCcEEEEEEee
Confidence 777777 77777777777778887776
No 102
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.47 E-value=2e-13 Score=112.82 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=94.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC--C--C
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA--I--P 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~--p 243 (350)
+++.+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++ ++.+|..+. . +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 444455 56788999999999999999999999999999999 888887763 3378 888888663 2 3
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++...+|+ ..++++++++|+ |||++++.+...+ +...+.+
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~~ 138 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLP-VGGRLVANAVTVE----------------------------SEQMLWA 138 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCC-TTCEEEEEECSHH----------------------------HHHHHHH
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcC-CCCEEEEEeeccc----------------------------cHHHHHH
Confidence 5999999999987 467999999999 9999997553221 1456667
Q ss_pred HHHhcCCceeEE
Q 018775 324 LLEQGGFHRCKI 335 (350)
Q Consensus 324 ll~~aGf~~~~~ 335 (350)
++++.|+...++
T Consensus 139 ~~~~~~~~~~~~ 150 (178)
T 3hm2_A 139 LRKQFGGTISSF 150 (178)
T ss_dssp HHHHHCCEEEEE
T ss_pred HHHHcCCeeEEE
Confidence 778888776554
No 103
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.47 E-value=9.8e-14 Score=113.97 Aligned_cols=131 Identities=12% Similarity=0.033 Sum_probs=94.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|... +.+ +||+|++..+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4688999999999999999999999999999999 899988764 225555 67665 333 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc-cCCHHHHHHHHHhcCCcee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK-ERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~ll~~aGf~~~ 333 (350)
|++ + +....+.++++.|+ |||.++-.+ +..-.+. .. |. ..-...|.+.+ ...+.++
T Consensus 126 HlL-~-~~~~al~~v~~~L~-pggvfISfp-tksl~Gr-----------------~~-gm~~~Y~~~~~~~~-~~~~~~~ 182 (200)
T 3fzg_A 126 PVL-K-QQDVNILDFLQLFH-TQNFVISFP-IKSLSGK-----------------EK-GMEENYQLWFESFT-KGWIKIL 182 (200)
T ss_dssp HHH-H-HTTCCHHHHHHTCE-EEEEEEEEE-CCCCC-------------------CT-TCCCCHHHHHHHHT-TTTSCEE
T ss_pred Hhh-h-hhHHHHHHHHHHhC-CCCEEEEeC-hHHhcCC-----------------Cc-chhhhHHHHHHHhc-cCcceee
Confidence 998 3 33456669999999 998887665 1111111 11 11 12256666666 5556667
Q ss_pred EEEEcCC
Q 018775 334 KIISMPA 340 (350)
Q Consensus 334 ~~~~~~~ 340 (350)
+...+++
T Consensus 183 ~~~~~~n 189 (200)
T 3fzg_A 183 DSKVIGN 189 (200)
T ss_dssp EEEEETT
T ss_pred eeeeeCc
Confidence 7666655
No 104
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.47 E-value=4.5e-13 Score=121.26 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=105.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC-C----C--C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD-A----I--P 243 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~-~----~--p 243 (350)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999999884 5779999999 888877654 1379999999987 4 3 2
Q ss_pred --CccEEEecchhccC--ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC-------CCC----c-----cc------c
Q 018775 244 --KADAVFMKWILHDW--DDEACVKILKNCRQAIPDKSGKLVLVEIVVQED-------GNN----I-----FG------D 297 (350)
Q Consensus 244 --~~D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~-------~~~----~-----~~------~ 297 (350)
.||+|++..++|+. +.++...+|++++++|+ |||.+++.....+.- ... . +. .
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 190 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPL 190 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCC
Confidence 49999999999986 44567799999999999 999999876532110 000 0 00 0
Q ss_pred cchhhhhhH-hh-hcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 298 MGLVFDLVM-FA-HTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 298 ~~~~~~~~~-~~-~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
......+.+ .. ... ....+.+++.+++++.||+++.....
T Consensus 191 ~~~~~~f~l~~~~~~~-~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 191 FGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp SCCEEEEEEC---CCE-EECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred ccceEEEEECCcccCc-ceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 000000000 00 011 12357899999999999999988764
No 105
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.47 E-value=2.4e-13 Score=115.72 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=95.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
++.+|||||||+|.++..+ +. +++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999999877 44 8999999 888887765 3689999999988 655 3999999999999875
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-Hhh--hcCCcccCCHHHHHHHHHhcC
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFA--HTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~s~~e~~~ll~~aG 329 (350)
. .++|++++++|+ |||++++.+...... ........ ... ...+...++.+++.++|+ |
T Consensus 111 ~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 V--ERVLLEARRVLR-PGGALVVGVLEALSP-------WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp H--HHHHHHHHHHEE-EEEEEEEEEECTTSH-------HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred H--HHHHHHHHHHcC-CCCEEEEEecCCcCc-------HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 4 588999999999 999999987543221 00000000 000 001134579999999999 7
No 106
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.45 E-value=3.3e-13 Score=121.38 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=100.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-------CeEEEeccCCC---------CCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-------GIFHVGGDMFD---------AIP 243 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------~i~~~~~d~~~---------~~p 243 (350)
++.+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4789999999999877776664 3468999999 999998875 11 26787887721 223
Q ss_pred --CccEEEecchhccC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC------------cc-cccchhh----h
Q 018775 244 --KADAVFMKWILHDW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN------------IF-GDMGLVF----D 303 (350)
Q Consensus 244 --~~D~i~~~~vlh~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~------------~~-~~~~~~~----~ 303 (350)
.||+|+|..++|+. +.++...+|++++++|+ |||++++.......-... .. ....... +
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 49999999999974 44456799999999999 999998876532211100 00 0000000 0
Q ss_pred ----hhHhhhcCC--cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 304 ----LVMFAHTTG--GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 304 ----~~~~~~~~~--~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
........+ -...+.+++.++++++||+++.....
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000000000 12457899999999999999988664
No 107
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.45 E-value=2.4e-14 Score=124.37 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC---CCC--CccEEEe---
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD---AIP--KADAVFM--- 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~p--~~D~i~~--- 250 (350)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ..+++++.+|... +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 56889999999999999999887664 7899999 999988764 5678888888654 344 3888864
Q ss_pred --cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc
Q 018775 251 --KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG 328 (350)
Q Consensus 251 --~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a 328 (350)
...++|++ +...++++++++|| |||+|++.+......... ..++ . -.....+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLk-PGG~l~f~~~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLK-PGGVLTYCNLTSWGELMK------SKYS-------D-ITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEE-EEEEEEECCHHHHHHHTT------TTCS-------C-HHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeC-CCCEEEEEecCCchhhhh------hhhh-------h-hhhhhHHHHHHHHHHc
Confidence 45556544 45688999999999 999998754222110000 0000 0 0111245667788999
Q ss_pred CCceeEE
Q 018775 329 GFHRCKI 335 (350)
Q Consensus 329 Gf~~~~~ 335 (350)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9986544
No 108
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.44 E-value=1.3e-12 Score=111.37 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=97.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHh----hhCCCCCCeEEEeccCCCC-----CC-CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVV----ATAPVCEGIFHVGGDMFDA-----IP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~-----~p-~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++..++.+++++|+ +.++ +.++...++.++.+|...+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 56788999999999999999999887778999999 7644 4444346788999988763 22 49999986
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HHHHhc
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KLLEQG 328 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~ll~~a 328 (350)
+.+ ..+...++++++++|| |||++++.-...+.. ...+.+++. +.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLK-EKGEVVIMVKARSID-----------------------STAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEE-EEEEEEEEEEHHHHC-----------------------TTSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhC-CCCEEEEEEecCCcc-----------------------ccCCHHHHHHHHHHHHHhh
Confidence 332 2344556999999999 999999873221100 001123321 237888
Q ss_pred CCceeEEEEcCC---ceeEEEEee
Q 018775 329 GFHRCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 329 Gf~~~~~~~~~~---~~~vi~~~~ 349 (350)
|++++...... .+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 99999988733 567788775
No 109
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.44 E-value=5.6e-13 Score=131.13 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=87.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------------CCCeEEEeccCCC-CCC--Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------------CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~~p--~~D 246 (350)
..++.+|||||||+|.++..|++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3468899999999999999999987 5679999999 888887743 2579999999998 554 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++..++||++++....++++++++|+ || .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEecC
Confidence 9999999999999888899999999999 99 77766544
No 110
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.43 E-value=3.2e-13 Score=115.88 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCC----CCCCeEEEeccCCCC--CC----CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAP----VCEGIFHVGGDMFDA--IP----KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~--~p----~~D~i~~~ 251 (350)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 789999999999999999999987 68899999999 88877654 356788898888763 11 38888753
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+++. ++...+++++++.|| |||+++|.......+... + .. ...++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LK-pGG~lvI~ik~r~~d~~~-----------------p-~~-~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLR-DGGYMLMAIKARSIDVTT-----------------E-PS-EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEE-EEEEEEEEEECCHHHHHT-----------------C-CC-HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhcc-CCCEEEEEEecccCCCCC-----------------C-hH-HHHHHHHHHHHHCCCE
Confidence 2221 234578999999999 999999865332221100 0 00 0123345678999999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
.++.+.+.. .+.++.++.
T Consensus 211 l~e~i~L~pf~~~H~lv~~~~ 231 (233)
T 4df3_A 211 IKDVVHLDPFDRDHAMIYAVM 231 (233)
T ss_dssp EEEEEECTTTSTTEEEEEECC
T ss_pred EEEEEccCCCCCceEEEEEEE
Confidence 999988754 366766653
No 111
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.43 E-value=6.6e-14 Score=121.52 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC---CCC--CccEEEe-cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD---AIP--KADAVFM-KW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~p--~~D~i~~-~~ 252 (350)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4678999999999999999966443 48999999 888887764 3679999999876 344 3999999 55
Q ss_pred h--hccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 253 I--LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 253 v--lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
. .+++.......++++++++|| |||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcC-CCeEEEEEecC
Confidence 4 344445556688999999999 99999987644
No 112
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.42 E-value=2.4e-13 Score=120.79 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC----C---CCeEEEeccCCCCCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV----C---EGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~i~~~~~d~~~~~p-- 243 (350)
.+++.++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .+++++.+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4455555 677899999999999999999998 78899999999 888876653 2 579999999998554
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++ ++++. ..+|++++++|+ |||++++...... ..+++.+
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~----------------------------~~~~~~~ 222 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMK-PGSVATFYLPNFD----------------------------QSEKTVL 222 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEE-EEEEEEEEESSHH----------------------------HHHHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcC-CCCEEEEEeCCHH----------------------------HHHHHHH
Confidence 3999998 34443 378999999999 9999998652110 1456777
Q ss_pred HHHhcCCceeEEEE
Q 018775 324 LLEQGGFHRCKIIS 337 (350)
Q Consensus 324 ll~~aGf~~~~~~~ 337 (350)
.++++||..+++..
T Consensus 223 ~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 223 SLSASGMHHLETVE 236 (275)
T ss_dssp HSGGGTEEEEEEEE
T ss_pred HHHHCCCeEEEEEE
Confidence 78889998887765
No 113
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.42 E-value=1.9e-13 Score=120.80 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred CcceEEEecCCchH----HHHHHHHHCC----CCcEEEecc-hhHhhhCCCC----------------------------
Q 018775 186 SIQSLADVGGGTGG----ALAEIVKSYP----HIKGINFDL-PHVVATAPVC---------------------------- 228 (350)
Q Consensus 186 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 228 (350)
+..+|+|+|||+|. +++.|++..+ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5566666644 468999999 8888876531
Q ss_pred ---------CCeEEEeccCCC-CCC---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 229 ---------EGIFHVGGDMFD-AIP---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 229 ---------~~i~~~~~d~~~-~~p---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+|+|..+|+.+ +++ .||+|+|.++|++++++...+++++++++|+ |||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 269999999998 554 4999999999999999888899999999999 9999987
No 114
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.42 E-value=2.5e-12 Score=108.98 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=93.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---CCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---IPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~p~ 244 (350)
++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344445 667889999999999999999987 779999999 888887764 23899999999882 346
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++...+ + .. ++++++++|+ |||++++..... .+..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lk-pgG~lv~~~~~~----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLA-PGTRIVANAVTL----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSC-TTCEEEEEECSH----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcC-CCcEEEEEecCc----------------------------ccHHHHHHH
Confidence 9999987644 1 23 8999999999 999998744211 025677788
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
+++.||.+.++
T Consensus 167 l~~~g~~i~~i 177 (204)
T 3njr_A 167 HARHGGQLLRI 177 (204)
T ss_dssp HHHHCSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 89999887775
No 115
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.41 E-value=3.9e-13 Score=116.39 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=98.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhh----hCCCCCCeEEEeccCCCC--C----CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVA----TAPVCEGIFHVGGDMFDA--I----PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~--~----p~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999999999999986 7789999999 66443 343347899999999872 2 249999984
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. ..+....++++++++|+ |||++++.- ........ . .. ..+-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lk-pgG~l~i~~-~~~~~~~~------~--~~---------~~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLR-NGGHFVISI-KANCIDST------A--SA---------EAVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEE-EEEEEEEEE-EHHHHCSS------S--CH---------HHHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcC-CCeEEEEEE-cccccccC------C--CH---------HHHHHHH-HHHHHHCCCc
Confidence 43 23344567999999999 999999832 21100000 0 00 0000123 5889999999
Q ss_pred eeEEEEcCCc---eeEEEEee
Q 018775 332 RCKIISMPAL---YSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~ 349 (350)
++++.++..+ +.++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEEe
Confidence 9998776433 66666654
No 116
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=115.16 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56789999999999999999998654 8999999 888877654 3689999999988 655 4999999999887
Q ss_pred CC-------------hHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 257 WD-------------DEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 257 ~~-------------~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+. .++...+|++++++|+ |||++++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence 65 4466799999999999 99999997744
No 117
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.40 E-value=1.1e-12 Score=109.18 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-C-C-CccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-I-P-KADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-p-~~D~i~~~- 251 (350)
..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..|... + . + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 457889999999999999999987 779999999 889888765 2689999977665 1 2 3 39999876
Q ss_pred chhccC------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 252 WILHDW------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 252 ~vlh~~------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
..+++- ..+....+|++++++|+ |||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~--------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLE-VGGRLAIMIYYGHDGGD--------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEE-EEEEEEEEEC------C--------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcC-CCcEEEEEEeCCCCCCH--------------------HHHHHHHHHHHhC
Confidence 333320 23456688999999999 99999987644322111 0011245666666
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 77789988877763
No 118
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.40 E-value=3.8e-12 Score=109.50 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHh----hhCCCCCCeEEEeccCCCCC------CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVV----ATAPVCEGIFHVGGDMFDAI------PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~ 251 (350)
+.++.+|||+|||+|.++..+++. .|..+++++|+ +.++ +.+++..++.++.+|...+. +.||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 678899999999999999999986 56789999999 7664 33333468999999998631 249999886
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
... + .....+++.+++.|+ |||+|++.......+.. . ......++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~Lk-pGG~lvisik~~~~d~t------------------~-~~~e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLK-VNGDMLLVIKARSIDVT------------------K-DPKEIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEE-EEEEEEEEEC-------------------------C-CSSSSTTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCC-CCeEEEEEEccCCcccC------------------C-CHHHHHHHHHHHHHHCCCE
Confidence 433 2 233344566777999 99999987322211100 0 0111123344677889999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
+++...+.. .+.++.+++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEEe
Confidence 999998844 477888776
No 119
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.39 E-value=8.8e-13 Score=115.73 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCC--CCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAI--PKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--p~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++..+|+.+++ ..||+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4678999999999999999888755 8999999 888887764 112899999987743 3599999865544
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
....++++++++|+ |||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~Lk-pgG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALV-PGGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcC-CCCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999 9999998653221 26889999999999999987
Q ss_pred EcCCceeEEEEee
Q 018775 337 SMPALYSIIEAYP 349 (350)
Q Consensus 337 ~~~~~~~vi~~~~ 349 (350)
..++- ..+.++|
T Consensus 243 ~~~~W-~~l~~~k 254 (254)
T 2nxc_A 243 AEGEW-VLLAYGR 254 (254)
T ss_dssp EETTE-EEEEEEC
T ss_pred ccCCe-EEEEEEC
Confidence 76553 3344443
No 120
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.39 E-value=4.3e-12 Score=109.30 Aligned_cols=142 Identities=11% Similarity=0.122 Sum_probs=100.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhC----CCCCCeEEEeccCCCC-----CC-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATA----PVCEGIFHVGGDMFDA-----IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~p-~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+ +...+++++.+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5578899999999999999999884 6679999999 7555543 3346899999999872 23 49999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. .......++++++++|+ |||++++. .........+ + ......+++.++ +++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lk-pgG~l~~~-~~~~~~~~~~----------------~-~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLK-RGGYGMIA-VKSRSIDVTK----------------E-PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEE-EEEEEEEE-EEGGGTCTTS----------------C-HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcC-CCCEEEEE-EecCCCCCCC----------------C-hhhhhHHHHHHH-Hhh-ce
Confidence 43 22334456999999999 99999987 2221111100 0 011125677777 777 99
Q ss_pred eeEEEEcCCc---eeEEEEeeC
Q 018775 332 RCKIISMPAL---YSIIEAYPQ 350 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~~ 350 (350)
.++...++.. +.++.++|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred eeeEeccCcccCCCEEEEEEeC
Confidence 9999888654 778887763
No 121
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.39 E-value=3.4e-12 Score=108.93 Aligned_cols=130 Identities=16% Similarity=0.117 Sum_probs=103.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC---CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP---KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p---~~D~i~~~~v 253 (350)
+++.+|+|||||+|.+++.+++..|..+++++|. +.+++.|++ .++|+++.+|.+++++ .||+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4678999999999999999999999889999999 888887764 4689999999998554 4999987654
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|..+.+.|+ |+|++++.- . ...+..+++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~-~~~~lVlq~-~-----------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLA-NVERLILQP-N-----------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCT-TCCEEEEEE-S-----------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhC-CCCEEEEEC-C-----------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 3446789999999999 999987621 1 126788899999999998
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-.-+ +-++.+|.+.+
T Consensus 139 ~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 86543 33566777764
No 122
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.38 E-value=2.5e-12 Score=109.73 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3689999999987 4 44 399999875
Q ss_pred hhccCChH------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+..... ....++++++++|+ |||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEe
Confidence 43221100 12478999999999 999998743
No 123
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.38 E-value=1.8e-12 Score=108.05 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=93.1
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC---CCc
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI---PKA 245 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---p~~ 245 (350)
++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.++. +.|
T Consensus 26 ~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 26 MCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 33444 5678899999999999999999887 78999999 888877654 268999999987622 469
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++++ ...++++++++|+ |||++++..... .+..++.+++
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~-~gG~l~~~~~~~----------------------------~~~~~~~~~l 147 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLK-PGGRIIVTAILL----------------------------ETKFEAMECL 147 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEE-EEEEEEEEECBH----------------------------HHHHHHHHHH
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcC-CCcEEEEEecCc----------------------------chHHHHHHHH
Confidence 99999888765 3578999999999 999998854211 0246778889
Q ss_pred HhcCCce
Q 018775 326 EQGGFHR 332 (350)
Q Consensus 326 ~~aGf~~ 332 (350)
++.||.+
T Consensus 148 ~~~g~~~ 154 (192)
T 1l3i_A 148 RDLGFDV 154 (192)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 9999943
No 124
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.38 E-value=7.3e-13 Score=115.23 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=99.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888887764 2469999999877 43 249999987
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.+ . +...++++++++|+ |||++++..... .....+++.+.+++.||.
T Consensus 149 ~~----~--~~~~~l~~~~~~Lk-pgG~l~~~~g~~--------------------------~~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVK-KNGLFVALKAAS--------------------------AEEELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEE-EEEEEEEEECC---------------------------CHHHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcC-CCCEEEEEeCCC--------------------------chHHHHHHHHHHHHcCCe
Confidence 63 2 24688999999999 999998752100 000145677889999999
Q ss_pred eeEEEEc--C---CceeEEEEee
Q 018775 332 RCKIISM--P---ALYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~--~---~~~~vi~~~~ 349 (350)
++++... + +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k 218 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRK 218 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EeEEEEEecCCCCCceEEEEEEe
Confidence 8887553 3 3345555554
No 125
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.37 E-value=6.7e-13 Score=111.72 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=97.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CC--CccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IP--KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p--~~D~i~~ 250 (350)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..+++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999985 6779999999 888887764 2689999999876 3 32 4999998
Q ss_pred cchhc-------cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 251 KWILH-------DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 251 ~~vlh-------~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
...+. ....++...+++++.++|+ |||++++.......... .......+|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~ 158 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLV-TGGIITVVIYYGGDTGF--------------------EEKEKVLEFLK 158 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-EEEEEEEEECCBTTTBS--------------------HHHHHHHHHHT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCc-CCCEEEEEEccCCCCcH--------------------HHHHHHHHHHH
Confidence 76441 1123345679999999999 99999987644322110 00111344555
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
.+.+.+|++.+...+
T Consensus 159 ~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 159 GVDQKKFIVQRTDFI 173 (197)
T ss_dssp TSCTTTEEEEEEEET
T ss_pred hCCCCcEEEEEEEec
Confidence 556678888887665
No 126
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.37 E-value=5.3e-12 Score=107.91 Aligned_cols=130 Identities=16% Similarity=0.048 Sum_probs=104.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p--~~D~i~~~~v 253 (350)
+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.. + +||+|+...+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4678999999999999999999988889999999 888887764 568999999999943 3 4999987664
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|.+..+.|+ ++|+|++.- .. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~-~~~~lIlqp------------------------~~------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQ-HVKTLVLQP------------------------NN------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGT-TCCEEEEEE------------------------SS------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhC-cCCEEEEEC------------------------CC------ChHHHHHHHHHCCCEEE
Confidence 4 3457789999999999 999887622 01 26888999999999998
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-.-+ +-++.+|.+.+
T Consensus 145 ~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 145 AEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 86544 34567887765
No 127
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.37 E-value=7.1e-14 Score=122.69 Aligned_cols=144 Identities=12% Similarity=0.050 Sum_probs=95.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC----CCC-----CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD----AIP-----KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~p-----~~D~i 248 (350)
++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 888887764 3579999999543 333 49999
Q ss_pred EecchhccCCh-------------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 249 FMKWILHDWDD-------------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 249 ~~~~vlh~~~~-------------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+++-..|.... +....++++++++|+ |||.+.+++.+..... .......+..... +..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lk-pgG~l~~~~~~~~~~~-------~~l~~~g~~~~~~-~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA-EGGELEFVKRIIHDSL-------QLKKRLRWYSCML-GKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHH-HHTHHHHHHHHHHHHH-------HHGGGBSCEEEEE-SST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEe-cCCEEEEEHHHHHHHH-------hcccceEEEEECC-CCh
Confidence 99855554320 112356789999999 9999988764432200 0000000000011 233
Q ss_pred CCHHHHHHHHHhcCCceeEEEEc
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.+++.++++++||+.+++..+
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEE
Confidence 45688999999999999988776
No 128
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.37 E-value=1.2e-12 Score=115.73 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=79.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh 255 (350)
..++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++ .++|+++.+|..+ +..+||+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67899999999999988776666778999999999 999998875 3789999999988 53459999986542
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ +..+++++++++|+ |||+|++.+
T Consensus 199 --~--d~~~~l~el~r~Lk-PGG~Lvv~~ 222 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVD-TETRIIYRT 222 (298)
T ss_dssp --S--CHHHHHHHHHHHCC-TTCEEEEEE
T ss_pred --c--CHHHHHHHHHHHcC-CCcEEEEEc
Confidence 2 34588999999999 999999865
No 129
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.37 E-value=1e-12 Score=115.07 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CC------
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AI------ 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~------ 242 (350)
...+++.++ ..++.+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ... ++..++.+ +.
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGG
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccccccc
Confidence 345556666 678899999999999999999987 468999999 889988765 111 23333332 11
Q ss_pred -CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 -PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++..++||++.++...++++++++| |||++++...
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL--PGG~l~lS~~ 149 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV--GSGTVRASVK 149 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC--cCcEEEEEec
Confidence 2599999999999999888889999999987 7999998654
No 130
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.37 E-value=3.1e-12 Score=110.32 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=95.8
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCC--CCCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMF--DAIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~--~~~p--~~D~i~~~~ 252 (350)
.+++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|.. .+++ .||+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4578999999999 999999999986 678999999 888887764 237999999964 3443 499999986
Q ss_pred hhccCChH-----------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 253 ILHDWDDE-----------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 253 vlh~~~~~-----------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
..++.++. ....+++++.++|+ |||++++.-... .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~---------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPDK---------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEESC---------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEeccc---------------------------H
Confidence 66554332 13689999999999 999999852110 0
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
...+++.+++++.||.+..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1257888999999998777655444
No 131
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.36 E-value=2e-12 Score=113.41 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=99.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p- 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+.++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555565 678899999999999999999998 88999999999 888887764 4569999999998654
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++ +.++. ..++++++++|+ |||++++...... ..+++.
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALK-PGGFFVAYTPCSN----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEE-EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcC-CCCEEEEEECCHH----------------------------HHHHHH
Confidence 3999997 33443 467999999999 9999998642110 146677
Q ss_pred HHHHhcC--CceeEEEE
Q 018775 323 KLLEQGG--FHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aG--f~~~~~~~ 337 (350)
+.+++.| |..+++..
T Consensus 205 ~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHTGGGBSCCEEEC
T ss_pred HHHHHcCCCccccEEEE
Confidence 8888999 88777643
No 132
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.36 E-value=3.7e-13 Score=115.99 Aligned_cols=114 Identities=10% Similarity=0.063 Sum_probs=90.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC--CCC---CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD--AIP---KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~p---~~D~i~~~~vlh~~ 257 (350)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 46789999999999999999998 568999999 888888765 5689999999965 444 499999871
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+...+|++++++|+ |||+++. . +...+.+++.++++++||..+++..
T Consensus 120 ---~~~~~l~~~~~~Lk-pgG~l~~---------------------------~--~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAA-PDAHFLY---------------------------V--GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEE-EEEEEEE---------------------------E--ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcC-CCcEEEE---------------------------e--CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 22467999999999 9999980 0 1122356788899999999887654
Q ss_pred c
Q 018775 338 M 338 (350)
Q Consensus 338 ~ 338 (350)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
No 133
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.36 E-value=5.3e-12 Score=111.05 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=101.5
Q ss_pred CC-CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEE
Q 018775 184 FD-SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVF 249 (350)
Q Consensus 184 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~ 249 (350)
.. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 7889999999999999999998765 9999999 888887764 4579999999988 3 32 499999
Q ss_pred ecchhccC------------------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC
Q 018775 250 MKWILHDW------------------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT 311 (350)
Q Consensus 250 ~~~vlh~~------------------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (350)
++-..+.. .......+++.+.++|+ |||+++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~---~~---------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVH---RP---------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEE---CT----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEE---cH----------------------
Confidence 96433221 11345679999999999 999999831 11
Q ss_pred CcccCCHHHHHHHHHhcCCceeEEEEc---C---CceeEEEEee
Q 018775 312 GGKERTEQEWMKLLEQGGFHRCKIISM---P---ALYSIIEAYP 349 (350)
Q Consensus 312 ~~~~~s~~e~~~ll~~aGf~~~~~~~~---~---~~~~vi~~~~ 349 (350)
....++.+.+++.||...++.++ + ....+++++|
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 12567888899999998887665 1 2355777776
No 134
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.35 E-value=8.8e-13 Score=115.32 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=100.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+|+++++|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888887764 3459999999887 43 249999986
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.+- +...+++.+.++|+ |||++++..... ......++.+.+++.||.
T Consensus 159 a~~------~~~~ll~~~~~~Lk-pgG~l~~~~g~~--------------------------~~~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLE-VGGAAVAMKGPR--------------------------VEEELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEE-EEEEEEEEECSC--------------------------CHHHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcC-CCeEEEEEeCCC--------------------------cHHHHHHHHHHHHHcCCe
Confidence 542 23578999999999 999998754110 000134566778889999
Q ss_pred eeEEEEc--CC---ceeEEEEee
Q 018775 332 RCKIISM--PA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~--~~---~~~vi~~~~ 349 (350)
..++.+. ++ ...++...|
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEEeeCCCCCCcEEEEEEEe
Confidence 9888764 32 345666655
No 135
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.35 E-value=1.6e-12 Score=116.99 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC-C---CC-CccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD-A---IP-KADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~p-~~D~i 248 (350)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888876653 3689999999887 2 12 49999
Q ss_pred EecchhccCChHHH--HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 249 FMKWILHDWDDEAC--VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 249 ~~~~vlh~~~~~~~--~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
++....+..+.... .+++++++++|+ |||.+++.... . .. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~----~---------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGES----I---------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEE-EEEEEEEEECC----T---------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCC----c---------cc-----------chHHHHHHHHHHH
Confidence 99776665544332 588999999999 99999886311 0 00 0113678889999
Q ss_pred hcCCceeEEEEc--C----CceeEEEEee
Q 018775 327 QGGFHRCKIISM--P----ALYSIIEAYP 349 (350)
Q Consensus 327 ~aGf~~~~~~~~--~----~~~~vi~~~~ 349 (350)
++||..+++... | +....+.|.|
T Consensus 229 ~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 229 ETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred hCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 999999888764 3 2344555554
No 136
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.34 E-value=1.7e-12 Score=107.24 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=87.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CC---C--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AI---P--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~---p--~~D~i~~~~vl 254 (350)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56889999999996 23787 888887765 3469999999987 54 4 39999999999
Q ss_pred ccC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 255 HDW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
||+ ++. ..+|++++++|+ |||++++.+........ . ...++.++|.++|+++|| +.
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~------------------~-~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILR-PGGCLFLKEPVETAVDN------------------N-SKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEE-EEEEEEEEEEEESSSCS------------------S-SSSCCHHHHHHHHHHTTC-EE
T ss_pred hhcccCH--HHHHHHHHHHCC-CCEEEEEEccccccccc------------------c-cccCCHHHHHHHHHHCCC-cE
Confidence 998 554 578999999999 99999996654332110 1 234578999999999999 43
Q ss_pred EEEE
Q 018775 334 KIIS 337 (350)
Q Consensus 334 ~~~~ 337 (350)
+..
T Consensus 131 -~~~ 133 (176)
T 2ld4_A 131 -VKE 133 (176)
T ss_dssp -EEE
T ss_pred -eec
Confidence 444
No 137
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.33 E-value=5e-12 Score=110.90 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34566666 678899999999999999999998 67889999998 888877654 2689999999988 465
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.||+|++ ++++. ..++++++++|+ |||++++...... ...++
T Consensus 164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~ 207 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEP--WKVLEKAALALK-PDRFLVAYLPNIT----------------------------QVLEL 207 (258)
T ss_dssp TTCEEEEEE-----ESSCG--GGGHHHHHHHEE-EEEEEEEEESCHH----------------------------HHHHH
T ss_pred CCCcCEEEE-----CCcCH--HHHHHHHHHhCC-CCCEEEEEeCCHH----------------------------HHHHH
Confidence 3999997 33443 367999999999 9999998662110 13566
Q ss_pred HHHHHhcCCceeEEEE
Q 018775 322 MKLLEQGGFHRCKIIS 337 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~ 337 (350)
.+.++++||..+++..
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 6778888998766543
No 138
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.33 E-value=1.1e-12 Score=120.20 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=88.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-Ccc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-KAD 246 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-~~D 246 (350)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44556664 34567999999999999999999999999999999 888887764 3346788999987333 599
Q ss_pred EEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 247 AVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 247 ~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+|+++..+|+ ++.+....++++++++|+ |||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLN-SGGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEE-EEEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 9999999986 245567899999999999 9999998764
No 139
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.32 E-value=2.5e-12 Score=119.04 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=86.5
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C--CCeEEEeccCCCCCC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C--EGIFHVGGDMFDAIP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~--~~i~~~~~d~~~~~p- 243 (350)
.+++.++ ...+.+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ . .+++++.+|+.++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4556666 45568999999999999999999999999999999 888887764 1 258889999999655
Q ss_pred -CccEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++..+|+ ..+.....++++++++|+ |||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 4999999988885 334455689999999999 999999854
No 140
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.32 E-value=2.9e-12 Score=108.60 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=94.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC--CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--p~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+.. ..||+|++..+ ++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 367999999999999999999999999999999 888877654 235999999999833 25999997542 22
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++++++++|+ |||.+++... . ...+++.+++. ||+.+++.
T Consensus 144 -----~~~~l~~~~~~L~-~gG~l~~~~~----------------------------~-~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPG-EQGRFYALKG----------------------------Q-MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -----HHHHHHHHTTSEE-EEEEEEEEES----------------------------S-CCHHHHHTSCT--TEEEEEEE
T ss_pred -----HHHHHHHHHHhcC-CCcEEEEEeC----------------------------C-CchHHHHHHhc--CCceeeee
Confidence 3578999999999 9999997521 0 12455555554 99988754
Q ss_pred --EcC---CceeEEEEee
Q 018775 337 --SMP---ALYSIIEAYP 349 (350)
Q Consensus 337 --~~~---~~~~vi~~~~ 349 (350)
..+ +...++.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~k 204 (207)
T 1jsx_A 187 KLQVPALDGERHLVVIKA 204 (207)
T ss_dssp EEECC--CCEEEEEEEEE
T ss_pred eeccCCCCCceEEEEEEe
Confidence 222 3455666665
No 141
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.32 E-value=5.1e-12 Score=107.82 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=77.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 567999999999999999999999999999999 888887654 3579999999987 3 44 4999887543
Q ss_pred hccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.. |+... ...+|++++++|+ |||.|++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcC-CCCEEEEEe
Confidence 22 22110 2478999999999 999998754
No 142
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.31 E-value=1.5e-11 Score=105.96 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p--~~D~i~~~~v 253 (350)
+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++.. + .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4678999999999999999999988889999999 888887764 468999999999843 3 3999987654
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|.+..+.|+ ++++|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~-~~~~lIlq~~------------------------~------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLA-GVTKLILQPN------------------------I------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGT-TCCEEEEEES------------------------S------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhC-CCCEEEEEcC------------------------C------ChHHHHHHHHHCCCEEE
Confidence 3 4557789999999999 9999886320 1 26888899999999987
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-..+ +-++.+|.+.+
T Consensus 145 ~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 65433 34566777765
No 143
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.29 E-value=1.2e-11 Score=109.61 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=94.9
Q ss_pred HHHhcccCC-CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh-CCCCCCeEEEe-ccCCC----CCC--Cc
Q 018775 176 LVSHYKDGF-DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT-APVCEGIFHVG-GDMFD----AIP--KA 245 (350)
Q Consensus 176 ~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~i~~~~-~d~~~----~~p--~~ 245 (350)
+++.+. . ..+.+|||||||+|.++..+++. +..+++++|. +.|++. ++...++.... .|+.. .+| .|
T Consensus 76 ~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 76 ALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 444454 3 35679999999999999998886 4558999999 888876 33345554432 34322 133 39
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC--cccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN--IFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
|++++...+|++ ..+|++++++|+ |||+++++- .|.-... .......+.+... ..++.+++.+
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLk-pGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~~-------~~~~~~~v~~ 217 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILV-DGGQVVALV--KPQFEAGREQIGKNGIVRESSI-------HEKVLETVTA 217 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSC-TTCEEEEEE--CGGGTSCGGGCC-CCCCCCHHH-------HHHHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcC-cCCEEEEEE--CcccccChhhcCCCCccCCHHH-------HHHHHHHHHH
Confidence 999998888753 468999999999 999999862 2211100 0000001111110 1225789999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+++++||.+..+...
T Consensus 218 ~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEC
Confidence 999999999888664
No 144
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.29 E-value=8.4e-12 Score=116.68 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=87.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC-------CC--------CCCeEEEecc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA-------PV--------CEGIFHVGGD 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~i~~~~~d 237 (350)
..+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 44555565 67889999999999999999999887778999999 7776665 32 2689999876
Q ss_pred CCC-C--C----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 238 MFD-A--I----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 238 ~~~-~--~----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.+. + + ..||+|+++++++. ++....|+++.+.|+ |||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LK-pGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAK-VGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCC-TTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCC-CCeEEEEeeccCCcc
Confidence 543 2 2 35999999877742 456678999999999 999999988776654
No 145
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.28 E-value=5e-12 Score=116.08 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=85.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-Cc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP-KA 245 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~ 245 (350)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 4455555 456789999999999999988885 5568999998546665543 3789999999998 555 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+|++..+++|+..+.....+.++++.|+ |||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEE-EEEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcC-CCeEEEEe
Confidence 99999999998887777788999999999 99999854
No 146
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=3.3e-11 Score=99.62 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=91.5
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D 246 (350)
+++.+. ..++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++ ..+++++.+|+.++++ .||
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 56778999999999999999998 7889999999 888887764 2579999999987444 599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..+ + ....++++++++ |||++++...... +..++.+.++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~---~gG~l~~~~~~~~----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK---KINHIVANTIVLE----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT---TCCEEEEEESCHH----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC---CCCEEEEEecccc----------------------------cHHHHHHHHH
Confidence 9999887 2 245788999888 6899887652110 1466788899
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
No 147
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.26 E-value=6.2e-12 Score=119.93 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p- 243 (350)
...+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.|++ .++|+++.+|+.+ +.+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 345556555 45678999999999999998887 57779999999447766653 3789999999998 665
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.||+|++..++|++..++....+.+++++|+ |||.+++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk-pgG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEE-EEEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcC-CCCEEEE
Confidence 4999999988888887777888999999999 9999985
No 148
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.26 E-value=3.5e-12 Score=112.27 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=78.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~ 261 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6789999999999999999987 568999999 8888877651111288899987 654 49999998876666433
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
...+|++++++|+ |||++++.....
T Consensus 131 ~~~~l~~~~~~Lk-pgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLV-PDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcC-CCeEEEEEeCCh
Confidence 5789999999999 999999876543
No 149
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.25 E-value=1.5e-11 Score=107.62 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC---CC-------C---------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV---CE-------G--------------------- 230 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------~--------------------- 230 (350)
.+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++. .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 45789999999999999999998 77789999999 888887763 22 2
Q ss_pred ----eE-------------EEeccCCCCC-------C-CccEEEecchhccCCh-------HHHHHHHHHHHhhCCCCCc
Q 018775 231 ----IF-------------HVGGDMFDAI-------P-KADAVFMKWILHDWDD-------EACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 231 ----i~-------------~~~~d~~~~~-------p-~~D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~~pgG 278 (350)
++ ++.+|++++. . .||+|+++..+++... +....++++++++|+ |||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG 208 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP-AHA 208 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC-TTC
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC-CCc
Confidence 67 9999999843 3 5999999876655432 556789999999999 999
Q ss_pred eEEEEee
Q 018775 279 KLVLVEI 285 (350)
Q Consensus 279 ~lli~e~ 285 (350)
+++++..
T Consensus 209 ~l~~~~~ 215 (250)
T 1o9g_A 209 VIAVTDR 215 (250)
T ss_dssp EEEEEES
T ss_pred EEEEeCc
Confidence 9998543
No 150
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.25 E-value=3.6e-11 Score=106.87 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=94.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
.++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 46789999999999999999998776 8999999 888887764 4569999999998 333 4999998432
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
.....+++++.++|+ |||.+++.+....... .....+++.+.++++||+...
T Consensus 202 -----~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAK-DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEE-EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCC-CCeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCeeEE
Confidence 122468999999999 9999998876542211 112367888999999998766
No 151
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.25 E-value=1.2e-11 Score=109.94 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=96.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p- 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34555666 677889999999999999999998 67899999999 888887764 2589999999988544
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++ +.++. ..+++++.++|+ |||++++...... ..+++.
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALK-GGGRFATVCPTTN----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEE-EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcC-CCCEEEEEeCCHH----------------------------HHHHHH
Confidence 4999998 33433 367999999999 9999998662110 135566
Q ss_pred HHHHhcCCceeEEEE
Q 018775 323 KLLEQGGFHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~ 337 (350)
+.+++.||..+++..
T Consensus 224 ~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 224 KKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCCceeEEEE
Confidence 677778888776643
No 152
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.24 E-value=5e-12 Score=108.25 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=77.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C--CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A--IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~--~p--~~D~i~~~~ 252 (350)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 578999999999999999999999999999999 888877653 3579999999876 2 44 399998864
Q ss_pred hhccCChH-HH------HHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDE-AC------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~-~~------~~~L~~~~~~L~~pgG~lli~e 284 (350)
... |+.. .. ..++++++++|+ |||.|++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEe
Confidence 433 2221 11 258999999999 999998865
No 153
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.24 E-value=1.4e-11 Score=104.60 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|..+.. ..
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3444555 677899999999999999999998 578999999 888887764 357999999998832 24
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
||+|++..++|++++ ++++.|+ |||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~-pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLD-EGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEE-EEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcc-cCcEEEEEEcC
Confidence 999999999999875 4788999 99999986543
No 154
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=1.5e-11 Score=104.85 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=82.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC---
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--- 243 (350)
.+++.+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..+++++.+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444454 5678899999999999999999987 6689999999 888887764 2569999999876443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..++|++++ ++++.|+ |||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~-pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLK-DGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEE-EEEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcC-CCcEEEEEEC
Confidence 4999999999998773 7889999 9999998653
No 155
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.23 E-value=2.3e-11 Score=104.35 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=79.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C-----CCccE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I-----PKADA 247 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-----p~~D~ 247 (350)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+. . ..||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999988 789999999 888877653 46799999998762 1 34999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
|++... ......+++++.++|+ |||.+++-+...+
T Consensus 137 v~~d~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~~ 171 (223)
T 3duw_A 137 IFIDAD-----KQNNPAYFEWALKLSR-PGTVIIGDNVVRE 171 (223)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCC-TTCEEEEESCSGG
T ss_pred EEEcCC-----cHHHHHHHHHHHHhcC-CCcEEEEeCCCcC
Confidence 997544 2345688999999999 9998887655443
No 156
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.23 E-value=2.9e-11 Score=101.01 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=80.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C--CCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I--PKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~--p~~D~i~~~~ 252 (350)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 45789999999999999988774 4568999999 888888765 2589999999987 2 3 2499999987
Q ss_pred hhccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
.+|+ ..++...+++++.+ +|+ |||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTR-EGTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCC-TTCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccC-CCeEEEEEecCC
Confidence 7664 33567789999999 999 999999865443
No 157
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=3.7e-11 Score=104.92 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C---CCccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---PKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---p~~D~i 248 (350)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34678999999999999999999988 889999999 888887764 4689999999876 2 2 159999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
++.. +......+++++.++|+ |||.|++.+...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSR-PGTLIIGDNVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCC-TTCEEEEECCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcC-CCeEEEEeCCCc
Confidence 9854 23445678999999999 999888765544
No 158
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.22 E-value=9.5e-12 Score=107.45 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEE--------Ee-ccCCCCCCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFH--------VG-GDMFDAIPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~--------~~-~d~~~~~p~ 244 (350)
.++.+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+.+ ..++.. .. .|+..+ .
T Consensus 28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 103 (232)
T 3opn_A 28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG--R 103 (232)
T ss_dssp HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC--C
T ss_pred HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC--C
Confidence 344444 12346799999999999999999873 348999999 888777543 233332 22 222221 1
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC--cccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN--IFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
+|.+.+..++.++ ..+|++++++|+ |||++++.. .+..... .........+.. ....+.+++.
T Consensus 104 ~d~~~~D~v~~~l-----~~~l~~i~rvLk-pgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l~ 168 (232)
T 3opn_A 104 PSFTSIDVSFISL-----DLILPPLYEILE-KNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKVL 168 (232)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSC-TTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHHH
T ss_pred CCEEEEEEEhhhH-----HHHHHHHHHhcc-CCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHHH
Confidence 3444444444332 468999999999 999999853 1110000 000000000000 0112678999
Q ss_pred HHHHhcCCceeEEEEcC------CceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMP------ALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~------~~~~vi~~~~ 349 (350)
++++++||+++.+...+ ....++.++|
T Consensus 169 ~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 169 KTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 99999999998886543 2345666655
No 159
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.21 E-value=2.6e-11 Score=108.03 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=76.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-Cc---cEEEec--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP-KA---DAVFMK-- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p-~~---D~i~~~-- 251 (350)
++.+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4679999999999999999999 9999999999 888887764 3479999999998543 48 999996
Q ss_pred ----------chhccCChH------HHHHHHHHHH-hhCCCCCceEEE
Q 018775 252 ----------WILHDWDDE------ACVKILKNCR-QAIPDKSGKLVL 282 (350)
Q Consensus 252 ----------~vlh~~~~~------~~~~~L~~~~-~~L~~pgG~lli 282 (350)
.+. |.+.. +...+++++. +.++ |||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~-pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCC-CCCEEEE
Confidence 233 22221 1227899999 9999 9999986
No 160
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.21 E-value=4.8e-11 Score=97.92 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCC-C--------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-A--------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~p--~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.+ |+.+++++|...+++. .+++++.+|+.+ + ++ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----CcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3567899999999999999999984 7789999998444432 579999999988 4 54 49999999
Q ss_pred chhccCChHH---------HHHHHHHHHhhCCCCCceEEEEee
Q 018775 252 WILHDWDDEA---------CVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 252 ~vlh~~~~~~---------~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..+|+.+... ...+++++.++|+ |||++++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 8888765431 1588999999999 9999997653
No 161
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.21 E-value=2.1e-11 Score=109.29 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=78.9
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP--KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p--~~D~i~~~~vl 254 (350)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 899887764 4689999999876 233 49999986544
Q ss_pred ccCChHH--HHHHHHHHHhhCCCCCceEEEEee
Q 018775 255 HDWDDEA--CVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 255 h~~~~~~--~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+...... ..+++++++++|+ |||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lk-pgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLA-PGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcC-CCcEEEEEec
Confidence 4322222 2578999999999 9999987553
No 162
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.21 E-value=6.7e-11 Score=99.63 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC--CCcEEEecchhHhhhCCCCCCeEEEeccCCC-C-----------
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP--HIKGINFDLPHVVATAPVCEGIFHVGGDMFD-A----------- 241 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~----------- 241 (350)
+.+.+. .+.++.+|||||||+|.++..+++.+| +.+++++|+.++. ...+++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 444443 135678999999999999999999988 6899999984431 23579999999987 4
Q ss_pred --------------CC--CccEEEecchhccCC----hHH-----HHHHHHHHHhhCCCCCceEEEE
Q 018775 242 --------------IP--KADAVFMKWILHDWD----DEA-----CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 242 --------------~p--~~D~i~~~~vlh~~~----~~~-----~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++ .||+|++...+|+.. +.. ...++++++++|+ |||++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~ 153 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN-IGGTYIVK 153 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEE
Confidence 34 499999987777532 111 1248999999999 99999873
No 163
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.20 E-value=4e-11 Score=103.93 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC--C---C--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA--I---P--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--~---p--~~D~i~~~~ 252 (350)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. ..+|+++.+|..+. + + +||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 68899999999 888887764 56899999999873 1 2 499998765
Q ss_pred hhccCChHHHHHHHHHHHh-hCCCCCceEEEEee
Q 018775 253 ILHDWDDEACVKILKNCRQ-AIPDKSGKLVLVEI 285 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~-~L~~pgG~lli~e~ 285 (350)
. |. +...+|+++++ .|+ |||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lk-pGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLE-EGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCC-TTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCC-CCCEEEEEeC
Confidence 4 42 34578999997 999 9999998654
No 164
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.20 E-value=2.1e-11 Score=107.25 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC--------CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA--------IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~--------~p- 243 (350)
..++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888776643 13699999999874 22
Q ss_pred -CccEEEecchhc----------------cCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILH----------------DWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh----------------~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|+++--.+ |........+++.+.++|+ |||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEE
Confidence 499999972221 2222235688999999999 99999874
No 165
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.20 E-value=3.8e-11 Score=111.21 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ...++++.+|+.+ ..+ .||+|+++..+|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 35789999999999999999987 568999999 888887765 2358999999998 444 599999998888
Q ss_pred c---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 D---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ ...+....++++++++|+ |||+++++.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~ 340 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLR-PGGVFFLVS 340 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred hcccccHHHHHHHHHHHHHhcC-cCcEEEEEE
Confidence 7 345667799999999999 999999863
No 166
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.19 E-value=2.2e-11 Score=111.85 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
.++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ ++| .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 5669999999557776653 4679999999998 666 49999997654
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++. ......+++++.++|+ |||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lk-pgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLA-PDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence 4432 3345688999999999 9999874
No 167
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.19 E-value=2.9e-11 Score=105.16 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D 246 (350)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3567999999999999999999886 789999999 888777764 4689999999876 2 2 3599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+|++... ......+++++.++|+ |||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lk-pGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVT-PKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEE-EEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcC-CCeEEEEECCccCC
Confidence 9988543 3345678999999999 99999987665544
No 168
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.19 E-value=1.7e-11 Score=105.92 Aligned_cols=97 Identities=9% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4578999999999999999999888999999999 888887764 358999999998732 249999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.. ......+++++.++|+ |||.|++-+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~Lk-pgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLK-HQGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEE-EEEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcC-CCeEEEEeeCCc
Confidence 43 2335678999999999 999998744433
No 169
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.19 E-value=1.6e-11 Score=105.55 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=101.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
.+..+|||||||.|-++..+....|..+++++|+ +.+++.++. ..+.++...|+.. +.+ +||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888887764 4568899999998 433 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
+.++.....+ ++.+.|+ |+|.++-.+.-.=.++. .. | ...-.+.|.+.+.+.|+.+.+ .
T Consensus 211 Le~q~kg~g~-~ll~aL~-~~~vvVSfp~ksl~Grs-------~g----m-------~~~Y~~~~e~~~~~~g~~~~~-~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVN-SPNIVVTFPTKSLGQRS-------KG----M-------FQNYSQSFESQARERSCRIQR-L 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSS-CSEEEEEEECC--------------C----H-------HHHHHHHHHHHHHHHTCCEEE-E
T ss_pred hhhhhhHHHH-HHHHHhC-CCCEEEeccchhhcCCC-------cc----h-------hhHHHHHHHHHHHhcCCceee-e
Confidence 9887766667 8999999 99887765531111100 00 1 111257889999999995544 4
Q ss_pred EcCC
Q 018775 337 SMPA 340 (350)
Q Consensus 337 ~~~~ 340 (350)
.+++
T Consensus 270 ~~~n 273 (281)
T 3lcv_B 270 EIGN 273 (281)
T ss_dssp EETT
T ss_pred eecC
Confidence 4443
No 170
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.19 E-value=3.8e-11 Score=103.53 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCCC---Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAIP---KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~p---~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+..+ .|
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34455555 6678899999999999999999986 68999998 888887764 2289999999987332 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
|+|++..++|++++ +++++|+ |||++++...
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~-pgG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLK-EGGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEE-EEEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHHcC-CCcEEEEEEc
Confidence 99999999999764 5788999 9999998764
No 171
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.18 E-value=5.9e-11 Score=108.51 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ ++| .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999999887 4468999999447776654 3789999999998 665 4999998763
Q ss_pred ---hccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 254 ---LHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 254 ---lh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
+++ ......+|++++++|+ |||+++
T Consensus 141 ~~~l~~--~~~~~~~l~~~~~~Lk-pgG~li 168 (340)
T 2fyt_A 141 GYFLLF--ESMLDSVLYAKNKYLA-KGGSVY 168 (340)
T ss_dssp BTTBTT--TCHHHHHHHHHHHHEE-EEEEEE
T ss_pred hhhccC--HHHHHHHHHHHHhhcC-CCcEEE
Confidence 443 3345678999999999 999987
No 172
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.18 E-value=2.2e-11 Score=104.46 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CC------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AI------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------p~~D 246 (350)
.++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999999864 789999999 888887764 3579999999754 12 3599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++....+++. ....+++.+ ++|+ |||.|++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~Lk-pgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLR-KGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCC-TTCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccC-CCeEEEEeCCC
Confidence 999988777643 334678888 9999 99999874433
No 173
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.18 E-value=4.1e-11 Score=103.74 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------CCCCeEEEeccCCC--C--CC--Cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------VCEGIFHVGGDMFD--A--IP--KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~i~~~~~d~~~--~--~p--~~ 245 (350)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4678999999999999999999999999999999 88876542 24679999999986 3 43 39
Q ss_pred cEEEecchhccCChH---H----HHHHHHHHHhhCCCCCceEEEEe
Q 018775 246 DAVFMKWILHDWDDE---A----CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 246 D~i~~~~vlh~~~~~---~----~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|.|++...-. |... . ...+|++++++|+ |||.|++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lk-pGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLR-VGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCC-CCCEEEEEe
Confidence 9988643221 1110 0 1368999999999 999999864
No 174
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.17 E-value=3.3e-11 Score=104.36 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-- 243 (350)
...+++.+. ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|...+++
T Consensus 80 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 344555555 67788999999999999999999987 89999998 888887764 2469999999855543
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..+++++++ ++.+.|+ |||++++...
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~-pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLK-IGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEE-EEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcC-CCcEEEEEEe
Confidence 3999999999998764 5788999 9999998553
No 175
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.17 E-value=2.9e-11 Score=112.14 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=81.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..++++. ..+++++|...+++.+++ .++|+++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5678899999999999999999873 348999998766666653 4679999999998 555 49999997766
Q ss_pred ccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 255 HDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+... .....++++++++|+ |||.+++.+...
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~~~~ 172 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLK-PTGVMYPSHARM 172 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEE-EEEEEESSEEEE
T ss_pred hcccchHHHHHHHHHHHhhCC-CCeEEEEecCeE
Confidence 66543 346678999999999 999998765443
No 176
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.16 E-value=6.2e-11 Score=101.61 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred cceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCC---CC--CCccEEEec
Q 018775 187 IQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFD---AI--PKADAVFMK 251 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~---~~--p~~D~i~~~ 251 (350)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ . ++|+++.+|..+ .. ..||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 45999999999999999999875 789999999 888887764 3 589999999876 23 249999885
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
... .....+++++.++|+ |||.|++-+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~Lk-pGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLR-RGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEE-EEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcC-CCcEEEEeCCCC
Confidence 432 234568999999999 999998754443
No 177
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.16 E-value=4.8e-11 Score=108.09 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p 243 (350)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4445555 66788999999999999999999877 478999999 888887764 246999999998732 2
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..++|+++ +++.+.|+ |||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lk-pgG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLK-EGGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEE-EEEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcC-CCcEEEEEEC
Confidence 499999999999877 46788999 9999999754
No 178
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.15 E-value=4.1e-11 Score=103.52 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=80.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---p~~D~i~~ 250 (350)
.++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ + . ..||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4577999999999999999999999999999999 888887764 3579999999987 2 1 24999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
....+ +...+++++.++|+ |||++++.+..
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~-pgG~lv~~~~~ 162 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVR-PGGLILSDNVL 162 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEE-EEEEEEEETTT
T ss_pred CCCHH-----HHHHHHHHHHHHcC-CCeEEEEEcCC
Confidence 77654 34578999999999 99999886543
No 179
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.15 E-value=7.3e-11 Score=104.18 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~---- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence 4678999999999999999999988889999999 888888765 5678999999987 554 499999866532
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.+++++++|+ |||++++.....
T Consensus 160 -----~l~~~~~~L~-pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -----KAEELARVVK-PGGWVITATPGP 181 (269)
T ss_dssp -----CHHHHHHHEE-EEEEEEEEEECT
T ss_pred -----hHHHHHHhcC-CCcEEEEEEcCH
Confidence 4889999999 999999987654
No 180
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.13 E-value=2.8e-11 Score=103.95 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D 246 (350)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|..+ + . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3567999999999999999999987 789999999 888877754 4679999999865 2 1 4599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+|++... ......++++++++|+ |||.|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLR-EGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEE-EEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcC-CCcEEEEeCCCcC
Confidence 9996442 3345678999999999 9999998665554
No 181
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.13 E-value=6.6e-11 Score=108.42 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=77.0
Q ss_pred CCcceEEEecCC------chHHHHHHHHH-CCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--------CccE
Q 018775 185 DSIQSLADVGGG------TGGALAEIVKS-YPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--------KADA 247 (350)
Q Consensus 185 ~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--------~~D~ 247 (350)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ...+|+++.+|+.+ +++ +||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 77777777765 69999999999 66632 35789999999998 443 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|++.. .|++ .+....|++++++|| |||.+++.|...
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLK-PGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVR-PGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEE-EEEEEEEECGGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcC-CCeEEEEEeccc
Confidence 99864 5654 345688999999999 999999987653
No 182
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.12 E-value=3.7e-11 Score=109.74 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----------------CCCeEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----------------CEGIFHV 234 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~~ 234 (350)
..++..++ ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++
T Consensus 95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34455555 677899999999999999999998 57789999999 888776654 2589999
Q ss_pred eccCCCC---CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 235 GGDMFDA---IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 235 ~~d~~~~---~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+|+.+. ++ .||+|++.. +.+ ..++++++++|+ |||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lk-pgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLK-HGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEE-EEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcC-CCcEEEEEeCC
Confidence 9999872 33 399999843 222 137899999999 99999987643
No 183
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.12 E-value=2e-10 Score=101.93 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-A 241 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~ 241 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555666 677889999999999999999986 57889999999 888776653 2579999999987 4
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
++ .||+|++ +.++. ..+++++.++|+ |||++++...
T Consensus 167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~-pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLV-AGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEE-EEEEEEEEES
T ss_pred CCCCceeEEEE-----CCcCH--HHHHHHHHHhCC-CCCEEEEEeC
Confidence 43 4999998 23333 267999999999 9999998764
No 184
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.11 E-value=6e-11 Score=106.01 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCC--C--CCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDA--I--PKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~--~--p~~D~i 248 (350)
+++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+. . ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877789999999 888887653 35899999998872 2 249999
Q ss_pred EecchhccCChHHH--HHHHHHHHhhCCCCCceEEEEe
Q 018775 249 FMKWILHDWDDEAC--VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 249 ~~~~vlh~~~~~~~--~~~L~~~~~~L~~pgG~lli~e 284 (350)
++...-+.-+.... ..++++++++|+ |||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lk-pgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLN-PGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcC-CCCEEEEec
Confidence 99554433222222 679999999999 999998753
No 185
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.10 E-value=8.9e-11 Score=106.82 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
.++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ +.| .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35689999999999999988886 4558999998557766553 4689999999998 665 49999997654
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++. ......++++++++|+ |||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lk-pgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLV-EGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcC-CCeEEEE
Confidence 4432 3345678999999999 9999874
No 186
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.10 E-value=4.1e-11 Score=98.00 Aligned_cols=95 Identities=16% Similarity=0.036 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-------CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-------KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-------~~D~i~~~~ 252 (350)
++.+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5789999999999999999998765 999999 888887765 2279999999876211 599999987
Q ss_pred hhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~ 287 (350)
.+|. ..+ .+++.+. ++|+ |||.+++.....
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~-~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVE-AGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEE-EEEEEEEEEETT
T ss_pred CCch-hHH---HHHHHHHhhcccC-CCcEEEEEeCCc
Confidence 7662 222 3455555 9999 999998755443
No 187
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.09 E-value=7.3e-11 Score=102.91 Aligned_cols=94 Identities=15% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------CCCeEEEeccCCC--C--CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------------CEGIFHVGGDMFD--A--IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~--~--~p- 243 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999998 777765532 2579999999987 2 32
Q ss_pred -CccEEEecchhccCChHHH-----------HHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILHDWDDEAC-----------VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~-----------~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+|.|++. ++++.. ..+++++.++|+ |||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk-pgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLK-EGGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEE-EEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcC-CCCEEEEE
Confidence 37777642 233211 378999999999 99999984
No 188
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.09 E-value=2.2e-10 Score=103.59 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-CC-CccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-IP-KADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~p-~~D~i~~~- 251 (350)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56788999999999999999999875 478999999 888877654 3479999999987 3 23 49999983
Q ss_pred -----chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 -----WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 -----~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++++ |+.++ ...+|+++.++|+ |||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk-pGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCCC
Confidence 23433 22222 1589999999999 999998866443
No 189
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.08 E-value=1.2e-10 Score=95.97 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-CCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-PKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-p~~D~i~~~~ 252 (350)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45789999999999999999987 5679999999 888887764 2479999999887 2 2 3499999976
Q ss_pred hhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~ 287 (350)
.+|. .....+++.+. ++|+ |||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLS-EQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcC-CCcEEEEEECCc
Confidence 6542 23456677776 9999 999998865443
No 190
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.08 E-value=1.3e-10 Score=96.49 Aligned_cols=97 Identities=19% Similarity=0.021 Sum_probs=75.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-------CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999999887 45678999999 888887764 25799999999872 23599999
Q ss_pred ecchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeee
Q 018775 250 MKWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~ 286 (350)
+...+|.... ..+++.+ .++|+ |||.+++....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~-~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLT-NEAVIVCETDK 156 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred ECCCCCchhH---HHHHHHHHHhcccC-CCCEEEEEeCC
Confidence 9877553223 3455666 88899 99999875433
No 191
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.08 E-value=5.6e-11 Score=100.99 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=77.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CCC-CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AIP-KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~p-~~D~i~~~~v 253 (350)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|..+ +.. +||+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999887 789999999 888887764 3579999999875 321 2999998632
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
......++++++++|+ |||.+++.+...
T Consensus 136 -----~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLA-KNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEE-EEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcC-CCeEEEEECccc
Confidence 2234678999999999 999998755443
No 192
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.06 E-value=1.5e-10 Score=100.44 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C----------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---------- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---------- 242 (350)
.++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++ .++++++.+|..+ + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4578999999999999999999987 689999999 888877654 3569999999865 2 1
Q ss_pred -------CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 -------PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 -------p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..||+|++.... +....+++++.++|+ |||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~-pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLK-PGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEE-EEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcC-CCeEEEEEcccc
Confidence 459999987443 345678999999999 999999865444
No 193
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.06 E-value=2.6e-10 Score=95.45 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCC-----------
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI----------- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~----------- 242 (350)
.++.+.+. .+.++.+|||+|||+|.++..+++. ..+++++|+.++ ....+++++.+|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 34555554 2467899999999999999999987 778999998432 12457999999998731
Q ss_pred ---CCccEEEecchhccC---------ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 ---PKADAVFMKWILHDW---------DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~---------~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..||+|++....... ..+....+++.+.++|+ |||+|++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk-pGG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR-NGGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEEE
Confidence 369999985322111 01224578999999999 999998633
No 194
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.06 E-value=8.5e-10 Score=93.97 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=79.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..+.+|||||||+|-++..+. +..+++++|+ +.+++.++. ..+.++...|... +.| +||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 568899999999999998877 8899999999 888887765 5678899999998 555 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.+.+....+ ++.+.|+ +++.++-.+
T Consensus 181 LE~q~~~~~~-~ll~aL~-~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLN-TPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCB-CSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhc-CCCEEEEcC
Confidence 8777655555 8999999 987666544
No 195
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.05 E-value=4.7e-10 Score=98.68 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC--CC------CeEEE--eccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV--CE------GIFHV--GGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567889999999999999998886 68999999446444332 11 68889 999988 533599999976
Q ss_pred hhccCChHH-----HHHHHHHHHhhCCCCCc--eEEEEe
Q 018775 253 ILHDWDDEA-----CVKILKNCRQAIPDKSG--KLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-----~~~~L~~~~~~L~~pgG--~lli~e 284 (350)
. ++.+... ...+|+.++++|+ ||| .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEe
Confidence 6 4433221 1247999999999 999 888744
No 196
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.05 E-value=9.7e-11 Score=98.92 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------C--CCeEEEeccCCC-C-C---CC-ccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------C--EGIFHVGGDMFD-A-I---PK-ADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~-~-~---p~-~D~i~~ 250 (350)
++.+|||+|||+|.++..++.+.. .+++++|+ +.+++.+++ . ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999998777643 58999999 888887764 2 589999999876 2 1 36 999999
Q ss_pred cchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~~~ 288 (350)
...+| . .....+++.+ .++|+ |||.+++......
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLK-PNALIYVETEKDK 167 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEE-EEEEEEEEEESSS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccC-CCcEEEEEECCCC
Confidence 87755 2 3345778888 66799 9999988665443
No 197
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.04 E-value=1.9e-10 Score=102.41 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=77.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 345566666 6678899999999999999999984 47999998 888876653 1579999999998 777
Q ss_pred CccEEEecchhccCChHHHHHHHHH--------------H--HhhCCCCCceEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKN--------------C--RQAIPDKSGKLV 281 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~--------------~--~~~L~~pgG~ll 281 (350)
.||+|+++ ..++|..+....+|.. + +.+++ |||+++
T Consensus 93 ~fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlk-PGg~~y 144 (285)
T 1zq9_A 93 FFDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAK-PGDKLY 144 (285)
T ss_dssp CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCC-TTCTTC
T ss_pred hhcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcC-CCCccc
Confidence 89999884 3444555444455532 2 46899 999764
No 198
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.04 E-value=1.5e-10 Score=99.53 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=76.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC------CCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCCC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP------HIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~p-- 243 (350)
..++.+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998654 368999998 888887764 2479999999987443
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|++...+|++. +++.+.|+ |||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lk-pgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLA-SGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEE-EEEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhc-CCCEEEEEE
Confidence 499999999998755 57889999 999998854
No 199
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.04 E-value=4.9e-10 Score=96.23 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=77.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC----
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI---- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---- 242 (350)
..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5679999999 888877654 257999999998743
Q ss_pred ---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 ---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++...+|++ ++++.+.|+ |||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lk-pgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLA-ENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEE-EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcC-CCcEEEEEEc
Confidence 249999999988864 467889999 9999998654
No 200
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.04 E-value=1.7e-10 Score=100.57 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=78.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------p~~ 245 (350)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999999 888877664 3589999999875 2 2 359
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+|++... ......+++++.++|+ |||.|++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lk-pGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVK-VGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBC-TTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCC-CCeEEEEecCCc
Confidence 99998543 2235678999999999 999998755443
No 201
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.04 E-value=1.4e-10 Score=99.71 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------p~~D 246 (350)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4578999999999999999999887 789999999 888877654 36899999998651 1 4599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+|++... ......+++++.++|+ |||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLR-PGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEE-EEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcC-CCeEEEEECCCc
Confidence 9998532 3345678999999999 999998866544
No 202
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.03 E-value=4.8e-10 Score=100.64 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=70.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-----hhHhhhCCC----CCCeEEEec-cCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-----PHVVATAPV----CEGIFHVGG-DMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~----~~~i~~~~~-d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..++++ .+++++|. +..++.... .++++++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 466789999999999999999987 47888887 433332221 257999999 9987 444699999966
Q ss_pred hhc---cCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 253 ILH---DWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 vlh---~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
.++ +..+.. ...+|+.++++|+ |||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lk-pGG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 543 211221 2258999999999 9998876
No 203
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=104.83 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=72.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++...+++. ..+++++|..++++.|++ .++|+++.+|+.+ +.|. +|+|++..+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999988766654 347899998556666553 6889999999998 6664 999998544333
Q ss_pred CC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 257 WD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 257 ~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+. ......++....+.|+ |||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lk-p~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLK-EGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEE-EEEEEES
T ss_pred ccccchhhhHHHHHHhhCC-CCceECC
Confidence 22 2246678888889999 9999874
No 204
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.03 E-value=4.7e-10 Score=99.20 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC--CC------CeEEE--eccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV--CE------GIFHV--GGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. +++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 567889999999999999999887 58999999446444432 11 68899 999987 533599999976
Q ss_pred hhccCChH----H-HHHHHHHHHhhCCCCCc--eEEEEe
Q 018775 253 ILHDWDDE----A-CVKILKNCRQAIPDKSG--KLVLVE 284 (350)
Q Consensus 253 vlh~~~~~----~-~~~~L~~~~~~L~~pgG--~lli~e 284 (350)
. +..+.. . ...+|+.++++|+ ||| .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEe
Confidence 6 443221 1 1247999999999 999 888743
No 205
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.03 E-value=1e-11 Score=107.80 Aligned_cols=136 Identities=18% Similarity=0.142 Sum_probs=97.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh 255 (350)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++. ..+++++.+|+.+ +.+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999874 78999999 888887764 1589999999988 422 599999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
+.++.. ..+.+++++|+ |||.+++... ...... .. . .. .+....+++..++...|...+..
T Consensus 156 ~~~~~~--~~~~~~~~~L~-pgG~~i~~~~-~~~~~~-----~~------~--~l--p~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMS-PDGFEIFRLS-KKITNN-----IV------Y--FL--PRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGGG--SSSBCTTTSCS-SCHHHHHHHH-HHHCSC-----EE------E--EE--ETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchhh--hHHHHHHhhcC-CcceeHHHHH-HhhCCc-----eE------E--EC--CCCCCHHHHHHHhccCCCEEEEe
Confidence 866543 36778999999 9998554221 111000 00 0 00 12335788888888888776665
Q ss_pred EEcCCce
Q 018775 336 ISMPALY 342 (350)
Q Consensus 336 ~~~~~~~ 342 (350)
....+..
T Consensus 217 ~~~~~~~ 223 (241)
T 3gdh_A 217 NFLNNKL 223 (241)
T ss_dssp EEETTEE
T ss_pred hhhcCcc
Confidence 5555443
No 206
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.03 E-value=8.5e-10 Score=92.34 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC---------CcEEEecchhHhhhCCCCCCeEEE-eccCCC-C--------CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH---------IKGINFDLPHVVATAPVCEGIFHV-GGDMFD-A--------IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~-~~d~~~-~--------~p- 243 (350)
+.++.+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+.. + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 456889999999999999999999765 789999984421 13468899 999876 2 22
Q ss_pred -CccEEEecchhccC----ChHH-----HHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHDW----DDEA-----CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~~----~~~~-----~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|++...+|.. .+.. ...++++++++|+ |||++++..
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~ 145 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ-PGGTFLCKT 145 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 49999986544421 1211 1478999999999 999998864
No 207
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.02 E-value=8.1e-10 Score=101.59 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=97.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~- 242 (350)
+..++.... ..++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.++. ..+++++.+|+.+ +.
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344555555 5678899999999999999999987 8899999999 888887764 2389999999998 43
Q ss_pred -CCccEEEecchhccC-C-hH----HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 243 -PKADAVFMKWILHDW-D-DE----ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~-~-~~----~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+.||+|+++--.+.. . .. ....++++++++|+ |||+++++.. +
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~t~-------------------------~---- 319 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP-PGGRVALLTL-------------------------R---- 319 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC-TTCEEEEEES-------------------------C----
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC-CCcEEEEEeC-------------------------C----
Confidence 348999995332211 1 11 12678999999999 9999997531 1
Q ss_pred CCHHHHHHHHHhcCCceeEEEEc
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.++++++ .||+..+.+.+
T Consensus 320 --~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 320 --PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp --HHHHHHHCC-TTEEEEEEEEC
T ss_pred --HHHHHHHhh-cCcEEEEEEEE
Confidence 344555555 88888887776
No 208
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.02 E-value=1.4e-09 Score=96.61 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc--hhHhhhCCC------------C----CCeEEEeccCCCC---C
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL--PHVVATAPV------------C----EGIFHVGGDMFDA---I 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~------------~----~~i~~~~~d~~~~---~ 242 (350)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++..|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3467899999999999999888763 348999998 466665432 1 3788886665431 1
Q ss_pred ------CCccEEEecchhccCChHHHHHHHHHHHhhCC---C-CCceEEEE
Q 018775 243 ------PKADAVFMKWILHDWDDEACVKILKNCRQAIP---D-KSGKLVLV 283 (350)
Q Consensus 243 ------p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~---~-pgG~lli~ 283 (350)
..||+|++..++|+. ++...+++.++++|+ + |||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 349999999999984 445688999999887 2 39988763
No 209
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.01 E-value=1.9e-10 Score=112.29 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=83.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p--~~D~i~~~~ 252 (350)
.++.+|||||||.|.++..|++. +.+++++|. +.+++.|+. ...|+|.++++.+ ..+ .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999997 678999999 888887653 2469999998876 232 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+|||+++++...-+.++.+.|+ ++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~-~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLA-DVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHH-HHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhc-cccceeeEEecccc
Confidence 9999988775566677888889 88888887765544
No 210
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.01 E-value=8e-10 Score=96.11 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=79.4
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p-- 243 (350)
.++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 4445555 667889999999999999999998 679999998 888877664 268999999999854 4
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.||+|++ +.++. ..+++++.++|+ |||++++...
T Consensus 158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFV-----DVREP--WHYLEKVHKSLM-EGAPVGFLLP 191 (248)
T ss_dssp CBSEEEE-----CSSCG--GGGHHHHHHHBC-TTCEEEEEES
T ss_pred cccEEEE-----CCcCH--HHHHHHHHHHcC-CCCEEEEEeC
Confidence 4999997 23332 367999999999 9999998664
No 211
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.01 E-value=3e-10 Score=95.96 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=74.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--CCC--CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--AIP--KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~p--~~D~i~~~~vl 254 (350)
++.+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999998887653 38999999 889887764 2589999999876 332 49999997665
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
| .. ....+++.+.+ +|+ |||.+++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~-pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLA-DEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEE-EEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence 4 22 33467777765 599 999998765443
No 212
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.99 E-value=7.6e-10 Score=94.97 Aligned_cols=93 Identities=19% Similarity=0.099 Sum_probs=75.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC---CCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI---PKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---p~~D~ 247 (350)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|..... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999884 6679999999 888877653 247999999988632 24999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
|++...++++. +++++.|+ |||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lk-pgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLK-PGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEE-EEEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcC-CCcEEEEEEe
Confidence 99988887643 57889999 9999998643
No 213
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.98 E-value=2.4e-10 Score=101.68 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=77.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC---CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA---IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~p-~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888876543 36899999998761 23 499999
Q ss_pred ecchhccCChHHH--HHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEAC--VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~~--~~~L~~~~~~L~~pgG~lli~ 283 (350)
+....+.-+.... .+++++++++|+ |||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 8554333222222 589999999999 99999874
No 214
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.97 E-value=3.4e-10 Score=98.09 Aligned_cols=96 Identities=17% Similarity=0.096 Sum_probs=77.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------p~~ 245 (350)
.+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4567999999999999999999987 789999999 888877654 3579999999875 2 2 349
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|++.. +......+++++.++|+ |||.+++-+..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~-pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVK-VGGIVAYDNTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEE-EEEEEEEECTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcC-CCeEEEEecCC
Confidence 9999753 23345789999999999 99998775543
No 215
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.96 E-value=4.7e-10 Score=99.29 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-CC-CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-IP-KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-~p-~~D~i~~~~vl 254 (350)
+.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888887764 25688999999873 32 49999986533
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
....+++++.+.|+ |||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lk-pgG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLK-DRGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEE-EEEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcC-CCCEEEEEEcCccc
Confidence 33467999999999 99999988876644
No 216
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.96 E-value=2.2e-10 Score=101.56 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998767789999999 888876643 4689999999876 2 2 2499999
Q ss_pred ecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...-+..+... ..+++++++++|+ |||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 954433222111 2478999999999 99999874
No 217
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.96 E-value=2.3e-10 Score=98.80 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCccE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKADA 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D~ 247 (350)
++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999887 789999999 888877764 3579999999754 1 1 45999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
|++... ......+++++.++|+ |||.|++.+....
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLR-RGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEE-EEEEEEEECTTGG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcC-CCeEEEEeCCCcC
Confidence 997543 2345678999999999 9999988665443
No 218
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.95 E-value=3.9e-10 Score=100.28 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC----------------CCCCeEEEeccCCCC---CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP----------------VCEGIFHVGGDMFDA---IPK 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~i~~~~~d~~~~---~p~ 244 (350)
..+.+|||||||+|.++..+++. +..+++++|+ +.+++.++ ...+++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999999 88877543 236899999998651 235
Q ss_pred ccEEEecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 245 ADAVFMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
||+|++....+.-+... ..+++++++++|+ |||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 99999865433222122 2678999999999 99999875
No 219
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.95 E-value=3.1e-10 Score=101.93 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--CC--CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--AI--PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~~--p~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ +. ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999878889999999 888876653 4689999999875 22 2499999
Q ss_pred ecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+....+.-+.. ...+++++++++|+ |||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccC-CCeEEEEec
Confidence 85543321111 12478999999999 999998744
No 220
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.95 E-value=4.7e-10 Score=101.30 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC--C--CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD--A--IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~p~~D~i 248 (350)
..+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ + ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888776543 3589999999876 2 2249999
Q ss_pred Eecchhcc---CChHH--HHHHHHHHHhhCCCCCceEEEEe
Q 018775 249 FMKWILHD---WDDEA--CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 249 ~~~~vlh~---~~~~~--~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++....|. -+... ..+++++++++|+ |||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcC-CCcEEEEEc
Confidence 99766543 11111 3588999999999 999999853
No 221
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.95 E-value=3.9e-10 Score=102.49 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC--CccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP--KADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p--~~D~i 248 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999878889999999 888887653 3589999999875 222 49999
Q ss_pred EecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++...-+.-+.+. ...++++++++|+ |||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 9854321111111 3689999999999 99999874
No 222
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.94 E-value=4e-10 Score=101.55 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C--CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A--IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~--~p~~D~i~ 249 (350)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ + ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878889999999 888876543 3589999999876 2 22499999
Q ss_pred ecchhccCChH-HH--HHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDE-AC--VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~-~~--~~~L~~~~~~L~~pgG~lli~e 284 (350)
+...-+ +... .. ..++++++++|+ |||.+++..
T Consensus 187 ~d~~~~-~~~~~~l~t~~~l~~~~~~Lk-pgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDP-VGPAESLFGQSYYELLRDALK-EDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEE-EEEEEEEEC
T ss_pred EcCCCC-CCcchhhhHHHHHHHHHhhcC-CCeEEEEEC
Confidence 855332 3222 21 689999999999 999998743
No 223
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.94 E-value=4.9e-10 Score=101.46 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC---CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA---IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~p-~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998778889999999 888876543 35899999998762 22 499999
Q ss_pred ecchhccCCh-HHH--HHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDD-EAC--VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~-~~~--~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...- .+.. ... .+++++++++|+ |||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALK-PNGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEE-EEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 85432 2221 221 688999999999 99999874
No 224
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.93 E-value=1.5e-09 Score=95.39 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=74.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCCCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
..+.+|||||||+|.++..+++. + .+++++|+ +.+++.+++ .++++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999999 899998875 258999999998733569999985
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+++. .++++++++|+ |||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~-pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLK-EDGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEE-EEEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcC-CCcEEEEE
Confidence 23332 48999999999 99999874
No 225
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.90 E-value=6.4e-10 Score=99.59 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~~ 250 (350)
.+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ + . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 468999999999999999999878889999999 888776543 3689999999765 2 2 24999998
Q ss_pred cchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 251 KWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 251 ~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...-+..... ...+++++++++|+ |||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEE-EEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 4322201111 12578999999999 99999874
No 226
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.87 E-value=4.6e-09 Score=99.58 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=83.7
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-- 243 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-- 243 (350)
...++ ..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++
T Consensus 252 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 252 SIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred HHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence 33444 567889999999999999999999877 79999999 777776543 3479999999987 3 44
Q ss_pred CccEEEe------cchhccCChH-------HH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 244 KADAVFM------KWILHDWDDE-------AC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 244 ~~D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.||+|++ ..+++..++. +. ..+|+++.+.|+ |||+|++.+....
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvy~tcs~~ 393 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK-PGGRLLYTTCSIF 393 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESCCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Confidence 3999996 3455543332 11 578999999999 9999998775543
No 227
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.87 E-value=4.3e-09 Score=93.37 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=82.8
Q ss_pred CCCcceEEEecC------CchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCCCCCeEE-EeccCCC-CCC-CccEEEecc
Q 018775 184 FDSIQSLADVGG------GTGGALAEIVKSYP-HIKGINFDL-PHVVATAPVCEGIFH-VGGDMFD-AIP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~i~~-~~~d~~~-~~p-~~D~i~~~~ 252 (350)
.+++.+|||+|| |+|. ..+++..| +.+++++|+ +. + .++++ +.+|+.+ +++ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 567889999999 5577 44566666 689999999 54 2 36889 9999998 544 499999853
Q ss_pred hhcc--------C-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 253 ILHD--------W-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 253 vlh~--------~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
..+. . .......++++++++|+ |||++++..... + ..+++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~-------------------------~---~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEH-------------------------S---WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSS-------------------------S---CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEecc-------------------------C---CHHHHHH
Confidence 3221 0 01234578999999999 999999743110 0 1257888
Q ss_pred HHHhcCCceeEEE
Q 018775 324 LLEQGGFHRCKII 336 (350)
Q Consensus 324 ll~~aGf~~~~~~ 336 (350)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8999999887776
No 228
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.87 E-value=4.7e-09 Score=92.54 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=91.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-CCccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-PKADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p~~D~i~~~~v 253 (350)
..++.+|||+|||+|.+++.+++. ...+++.+|+ |.+++.+++ .++++++.+|..+ .. ..||.|++..-
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 357899999999999999999887 3568999999 888887664 6789999999988 32 24999987532
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
.....+|..+.++|+ |||.|.+.+....+.. .....+.++++.++.|+.+.
T Consensus 202 ------~~~~~~l~~a~~~lk-~gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAK-DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp ------SSGGGGHHHHHHHEE-EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred ------CcHHHHHHHHHHHcC-CCCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCcEE
Confidence 123467889999999 9999988776553321 11235777888899998753
No 229
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.85 E-value=1.4e-09 Score=96.31 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----C-CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----P-KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p-~~D~i 248 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 567889999999999999999998776 79999999 887776653 3479999999887 32 3 59999
Q ss_pred Eec------chhcc---CCh-------HHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 249 FMK------WILHD---WDD-------EACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 249 ~~~------~vlh~---~~~-------~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
++. .+++. |.. +....+|+++.+.|+ |||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK-KDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE-EEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCC
Confidence 985 22221 111 123588999999999 9999998765443
No 230
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.83 E-value=3.1e-09 Score=89.33 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCCCCCccEEEecchhccCChHH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEA 261 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~ 261 (350)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++...+|++++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCch
Confidence 346789999999999999999887 4457999999 888888765 2379999999987224699999999999887654
Q ss_pred HHHHHHHHHhhC
Q 018775 262 CVKILKNCRQAI 273 (350)
Q Consensus 262 ~~~~L~~~~~~L 273 (350)
...+++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 457888888876
No 231
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.82 E-value=1e-08 Score=96.29 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCC--CCccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAI--PKADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~--p~~D~i~~ 250 (350)
.+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+.. ..||+|++
T Consensus 30 ~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3444444 3345699999999999999999886 6789999999 8888877 57999999999832 35999999
Q ss_pred c--chh--------ccCChHHH-----------------HHHHHHHHhhCCCCCceEEEEe
Q 018775 251 K--WIL--------HDWDDEAC-----------------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 251 ~--~vl--------h~~~~~~~-----------------~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ +.- +|++++.. ..+++++.+.|+ |||+++++-
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~~G~~~~i~ 164 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVV 164 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 5 111 11222221 267999999999 999998765
No 232
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.82 E-value=4.9e-09 Score=95.94 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-----CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-----IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~ 251 (350)
.++.+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.++.+|.+.+.+ .||+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45789999999999999999988764 68999999 888877754 3368999999988433 59999998
Q ss_pred chhccCChHHH----------------HHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDEAC----------------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~~~----------------~~~L~~~~~~L~~pgG~lli~e 284 (350)
--+++++.++. ..+++++.+.|+ |||+++++.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk-~gG~~~~v~ 256 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLV 256 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 77666654432 268999999999 999988755
No 233
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.80 E-value=6.7e-09 Score=94.34 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=73.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CC-CeEEEeccCCCC-------CCCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CE-GIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
++.+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 567999999999999999998643 8999999 888887764 23 599999999872 12599999
Q ss_pred ecch----------hccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWI----------LHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~v----------lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.-- ++. .++...+++++.++|+ |||.+++..
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~Lk-pgG~lli~~ 272 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILS-PKALGLVLT 272 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBC-TTCCEEEEE
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcC-cCcEEEEEE
Confidence 8321 111 2345689999999999 999977654
No 234
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.80 E-value=3.7e-08 Score=83.10 Aligned_cols=90 Identities=17% Similarity=0.014 Sum_probs=71.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~ 257 (350)
..++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.++. ..+++++.+|+.+-...||+|++...+|.+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccc
Confidence 34678999999999999999998733 37999999 888887764 127999999998832369999998888877
Q ss_pred ChHHHHHHHHHHHhhCC
Q 018775 258 DDEACVKILKNCRQAIP 274 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~ 274 (350)
.......+++++.+.+.
T Consensus 126 ~~~~~~~~l~~~~~~l~ 142 (207)
T 1wy7_A 126 RKHADRPFLLKAFEISD 142 (207)
T ss_dssp STTTTHHHHHHHHHHCS
T ss_pred cCCchHHHHHHHHHhcC
Confidence 65555678888888873
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.80 E-value=7.4e-09 Score=92.78 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=72.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~ 245 (350)
..+++.++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 567889999999999999999986 458999999 888877654 3589999999998 66789
Q ss_pred cEEEecchhccCChHHHHHHH---------------HHHHhhCCCCCc
Q 018775 246 DAVFMKWILHDWDDEACVKIL---------------KNCRQAIPDKSG 278 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L---------------~~~~~~L~~pgG 278 (350)
|+|+++ ..+++..+....++ ..+.++++ |+|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla-~~G 153 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLA-NVG 153 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTC-CTT
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhc-CCC
Confidence 999884 45556666666666 34667888 766
No 236
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.79 E-value=1e-08 Score=89.09 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=72.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++.++ ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 345566665 5678899999999999999999986 68999999 888876654 3689999999998 6652 3
Q ss_pred cEEEecchhccCChHHHHHHH--------------HHHHhhCCCCCceEE
Q 018775 246 DAVFMKWILHDWDDEACVKIL--------------KNCRQAIPDKSGKLV 281 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~~pgG~ll 281 (350)
+..+.++..++++.+-...++ ..+.++++ |+|++.
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~-~~G~l~ 143 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLN-TKRSLA 143 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTC-TTSHHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhc-CCcchh
Confidence 334444544444333333333 23667777 777543
No 237
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.77 E-value=3.4e-09 Score=92.21 Aligned_cols=104 Identities=12% Similarity=0.228 Sum_probs=76.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC---C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP---K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p---~ 244 (350)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ +
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 44555665 6678899999999999999999985 78999999 888888876 3579999999998 654 2
Q ss_pred ccEEEecchhccCChHHHHHHH--------------HHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMKWILHDWDDEACVKIL--------------KNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~~pgG~lli~e 284 (350)
| .|+ ++..++.+.+....++ +.+.++|+ |||++.+..
T Consensus 95 f-~vv-~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~-~~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIV-GNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD-IHRTLGLLL 145 (245)
T ss_dssp E-EEE-EECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHC-GGGSHHHHT
T ss_pred c-EEE-EeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhC-CCCchhhhh
Confidence 6 443 3433333333333333 56899999 999987643
No 238
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.76 E-value=1e-07 Score=87.44 Aligned_cols=151 Identities=18% Similarity=0.273 Sum_probs=95.6
Q ss_pred CcceEEEecCCchHHHHHH--------HHHC-------CCCcEEEecchh-H-------hhhCCC--------------C
Q 018775 186 SIQSLADVGGGTGGALAEI--------VKSY-------PHIKGINFDLPH-V-------VATAPV--------------C 228 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~--------------~ 228 (350)
...+|+|+|||+|..+..+ .+++ |..++..-|+|. . +...++ .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3689999999999988776 2233 778888888853 1 122110 0
Q ss_pred CCeEEEeccCCC-CCCC--ccEEEecchhccCCh------------------------------------HHHHHHHHHH
Q 018775 229 EGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDD------------------------------------EACVKILKNC 269 (350)
Q Consensus 229 ~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~------------------------------------~~~~~~L~~~ 269 (350)
--+.-+++.+.. .+|+ +|+|+++.+||-+++ .+...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 113346677777 5664 999999999997661 1445679999
Q ss_pred HhhCCCCCceEEEEeeeecCCCCCcccccchhh-hhh---H--hh-------------hcCCcccCCHHHHHHHHH-hcC
Q 018775 270 RQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF-DLV---M--FA-------------HTTGGKERTEQEWMKLLE-QGG 329 (350)
Q Consensus 270 ~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~-~~~---~--~~-------------~~~~~~~~s~~e~~~ll~-~aG 329 (350)
++.|+ |||++++.-...++............+ +.. . +. ..+ -..++.+|++++++ +.|
T Consensus 212 a~eL~-pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P-~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 212 AAEVK-RGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP-VYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHHEE-EEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC-BCCCCHHHHHHHHHHHCS
T ss_pred HHHhC-CCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc-ccCCCHHHHHHHHHhcCC
Confidence 99999 999999877655543211000000111 110 0 10 011 23358999999998 599
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|++.++...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776543
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.75 E-value=2e-08 Score=94.65 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--CC--CccEEEe--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--IP--KADAVFM-- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~p--~~D~i~~-- 250 (350)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56788999999999999999999998889999998 777766543 3358899999987 3 33 4999996
Q ss_pred ----cchhccCChH-------HH-------HHHHHHHHhhCCCCCceEEEEeeee
Q 018775 251 ----KWILHDWDDE-------AC-------VKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ----~~vlh~~~~~-------~~-------~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..++++.++. +. ..+|+++.+.|+ |||+|++.....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk-pGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence 2455543331 11 488999999999 999999877544
No 240
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.74 E-value=5.2e-09 Score=98.75 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEe-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFM- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~- 250 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|..+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 567899999999999999999998765 68999999 888877654 23 8999999876 3 23 4999996
Q ss_pred -----cchhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeeee
Q 018775 251 -----KWILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 -----~~vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..+++ .|+.++. .++|+++.+.|+ |||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG-PGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeccC
Confidence 12222 2333222 679999999999 999999766444
No 241
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.73 E-value=1.4e-08 Score=93.94 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=89.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||+|||+|.+++.++...+..+++++|+ +.+++.++. .++++++.+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4678999999999999999999887778999999 888887765 2589999999998 544 4999999643
Q ss_pred hccCC-----hHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 254 LHDWD-----DEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~-----~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
.+... ..+ -..+++.++++|. |.++++. . +.+.+.+.+++
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l~---g~~~~i~-------------------------~------~~~~~~~~~~~ 341 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVLE---KRGVFIT-------------------------T------EKKAIEEAIAE 341 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHEE---EEEEEEE-------------------------S------CHHHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHcC---CeEEEEE-------------------------C------CHHHHHHHHHH
Confidence 32211 111 2567788888775 3443321 1 25677788999
Q ss_pred cCCceeEEEEc
Q 018775 328 GGFHRCKIISM 338 (350)
Q Consensus 328 aGf~~~~~~~~ 338 (350)
.||+..+.+++
T Consensus 342 ~G~~~~~~~~~ 352 (373)
T 3tm4_A 342 NGFEIIHHRVI 352 (373)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCEEEEEEEE
Confidence 99999888776
No 242
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.73 E-value=2.4e-08 Score=95.05 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEec--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMK-- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~-- 251 (350)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 788999999999999999999875 478999999 888776654 3579999999987 3 33 49999971
Q ss_pred ----chhc-------cCChHH-------HHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 ----WILH-------DWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 ----~vlh-------~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.+++ +|+.++ -.++|+++.++|+ |||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR-PGGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEecccCC
Confidence 2332 233322 2478999999999 9999998765443
No 243
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.70 E-value=5.2e-09 Score=97.17 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=73.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CC-CeEEEeccCCC--C-C----CCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CE-GIFHVGGDMFD--A-I----PKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~--~-~----p~~D~i 248 (350)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++++.+|+++ + . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 457899999999999999999863 237999999 888887764 22 89999999876 2 1 259999
Q ss_pred Eecchh-----ccCC--hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 249 FMKWIL-----HDWD--DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 249 ~~~~vl-----h~~~--~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++.--. ++.. .+...++++.+.+.|+ |||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEe
Confidence 983211 1211 2234568889999999 999988754
No 244
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.67 E-value=1.6e-08 Score=95.35 Aligned_cols=103 Identities=11% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~ 251 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999987654 68999999 877776654 3569999999876 2 23 49999972
Q ss_pred ------chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 ------WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ------~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++.. |+.++ ...+|+++.+.|+ |||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK-NKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE-EEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEeec
Confidence 12222 21111 1378999999999 999998766544
No 245
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.61 E-value=8.5e-08 Score=85.30 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-- 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-- 244 (350)
...+++.+. ..++.+|||||||+|.++..|++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 345566666 667889999999999999999998 468999998 888887765 4789999999998 6664
Q ss_pred ccEEEecchhccCChH
Q 018775 245 ADAVFMKWILHDWDDE 260 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~ 260 (350)
||+|+++. -++++.+
T Consensus 115 fD~Iv~Nl-Py~is~p 129 (295)
T 3gru_A 115 FNKVVANL-PYQISSP 129 (295)
T ss_dssp CSEEEEEC-CGGGHHH
T ss_pred ccEEEEeC-cccccHH
Confidence 99998653 3344443
No 246
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.59 E-value=7.8e-08 Score=89.26 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++..|||.+||+|.+++..+....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 567889999999999999888765433 5699
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEec--chhccCChHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMK--WILHDWDDEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~--~vlh~~~~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|+++.+|+.+ +.+ .||+|+++ +....-..++...+.+.+.+.|+ + ||++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 346 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK-RMPTWSV 346 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH-TCTTCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHh-cCCCCEE
Confidence 9999 888887764 4579999999998 444 49999996 22221012455667777777776 5 8998
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
+++..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88653
No 247
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.58 E-value=4.1e-08 Score=89.46 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+.+....||+|++.--
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 4678999999 888887764 35899999999984356999998421
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.....+++.+.++|+ |||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVE-EGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEE-EEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcC-CCCEEEEEEeec
Confidence 112378999999999 999999876544
No 248
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.58 E-value=4.1e-08 Score=91.53 Aligned_cols=96 Identities=16% Similarity=0.034 Sum_probs=73.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------C-C-CeEEEeccCCCC-------CCCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------C-E-GIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 57899999999999999999864 458999999 888887764 2 3 799999999872 12599999
Q ss_pred ecchh--------ccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWIL--------HDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vl--------h~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.--. +.. ......++.++.+.|+ |||.+++..
T Consensus 299 ~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~Lk-pgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGA-CRGYKDINMLAIQLLN-EGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred ECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcC-CCcEEEEEe
Confidence 85211 111 1345688999999999 999988754
No 249
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.57 E-value=2.4e-07 Score=85.64 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++..|||.+||+|.+++..+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 567899999999999999988765433 5699
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEec--chhccCChHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMK--WILHDWDDEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~--~vlh~~~~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|+++.+|+.+ +.+ .||+|+++ +-...-..++...+.+++.+.|+ + |+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFA-PLKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT-TCTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh-hCCCcEE
Confidence 9999 888887764 4579999999998 444 59999986 22221123566778888888887 5 8998
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
.++..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87653
No 250
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.55 E-value=4.6e-08 Score=91.21 Aligned_cols=98 Identities=19% Similarity=0.101 Sum_probs=74.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-----CCCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-----IPKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-----~p~~D~i~~ 250 (350)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++ + ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 3458999999 888887764 2289999999887 2 125999998
Q ss_pred cchhccCC-------hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 251 KWILHDWD-------DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 251 ~~vlh~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.--.+..+ ......+++++.+.|+ |||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEC
Confidence 42111111 1445688999999999 9999887653
No 251
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.53 E-value=5.7e-08 Score=90.09 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=73.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-------CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-------IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~p~~D~i~~~ 251 (350)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+++. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 568999999 888887764 23499999999872 1259999983
Q ss_pred chhccCC-------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWD-------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---...+ ......+++++.+.|+ |||.+++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 325 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATAS 325 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 2111111 1345678999999999 999998765
No 252
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.53 E-value=1.7e-07 Score=86.93 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC---CC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA---IP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~p-~~D~i~~~~vl 254 (350)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .-..++..+|+++. .+ .||+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 358899999999999999999874 44999999 888887764 22235678898872 22 39999984221
Q ss_pred ccCC-------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 255 HDWD-------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 255 h~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..-+ ......+++++.++|+ |||.|++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lk-pGG~Lv~~s 326 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLA-EEGFLWLSS 326 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 1111 1233578999999999 999998655
No 253
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.52 E-value=5.9e-08 Score=91.85 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-------------CCCcEEEecc-hhHhhhCCC------C--CCe
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-------------PHIKGINFDL-PHVVATAPV------C--EGI 231 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~--~~i 231 (350)
..+++.+. ...+.+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+. . .++
T Consensus 161 ~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 161 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 34444444 4567799999999999999888753 4568999999 888776643 1 167
Q ss_pred EEEeccCCC-CCC-CccEEEecchhccCChH---------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 232 FHVGGDMFD-AIP-KADAVFMKWILHDWDDE---------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 232 ~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~---------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+.++|.+. +.. .||+|+++--++..... .-..+++++.+.|+ |||++.++-
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~gG~~a~V~ 307 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVVL 307 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc-cCCEEEEEE
Confidence 899999998 433 59999997544432111 12478999999999 999998765
No 254
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.52 E-value=3.1e-07 Score=79.86 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=66.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCCC-c-cE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIPK-A-DA 247 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p~-~-D~ 247 (350)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 45566666 567889999999999999999987 4578999999 888887765 3579999999998 6654 2 45
Q ss_pred EEecchhccCChHHHHHHH
Q 018775 248 VFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L 266 (350)
++..+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666665544333333
No 255
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.51 E-value=1.4e-07 Score=87.40 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=80.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++.+|||.+||+|.+++..+....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555555 567899999999999999998775322 5799
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhc-cCC-hHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILH-DWD-DEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh-~~~-~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|++.++|+.+ +.+ .||+|+++--.. .+. .++...+.+++.+.|+ + |+++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 340 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR-KLKNWSY 340 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH-TSBSCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh-hCCCCEE
Confidence 9999 899988765 3479999999998 444 499999953221 112 3456677887877777 5 8888
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
.++..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87653
No 256
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.48 E-value=1.1e-07 Score=92.53 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhccc--CCCCcceEEEecCCchHHHHHHHH---HC-CCCcEEEecch
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKD--GFDSIQSLADVGGGTGGALAEIVK---SY-PHIKGINFDLP 219 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~D~~ 219 (350)
..|+.+++|+-.-..|.+++... +.+.... ...+...|+|||||+|-++...++ +. ..+++..++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 34677888887766677665432 2222210 023457899999999988544333 32 23467888874
Q ss_pred hHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 220 HVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 220 ~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
++...+++ .++|+++.+|+++ ..|. +|+|++.++=+..-.+-...+|....+.|| |||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LK-PgGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLK-DDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEE-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcC-CCcEEc
Confidence 44444432 7899999999999 7775 999998665444434445577888889999 999875
No 257
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.45 E-value=4e-07 Score=80.00 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC---Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP---KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p---~~ 245 (350)
..+++.+. ..++ +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5667 99999999999999999975 57899998 888877654 4689999999998 655 36
Q ss_pred cEEEecchhccCChHHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKN 268 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~ 268 (350)
|.|+ ++..++++.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6655 455666676655555554
No 258
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.44 E-value=1.5e-06 Score=79.66 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=92.0
Q ss_pred cceEEEecCCchHHHHHHHHH-----------------CCCCcEEEecchh------------HhhhC-----CCCCC--
Q 018775 187 IQSLADVGGGTGGALAEIVKS-----------------YPHIKGINFDLPH------------VVATA-----PVCEG-- 230 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~------------~~~~a-----~~~~~-- 230 (350)
..+|+|+||++|..+..++.. .|.++++.-|+|. ..+.+ .....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 789999999999998887765 4677888888861 11111 11112
Q ss_pred eEEEeccCCC-CCCC--ccEEEecchhccCChHH-------------------------H------------HHHHHHHH
Q 018775 231 IFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA-------------------------C------------VKILKNCR 270 (350)
Q Consensus 231 i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~~~ 270 (350)
+.-++|.|.. .+|+ +|+|+++.+||-+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566766 5664 99999999999654221 1 22377779
Q ss_pred hhCCCCCceEEEEeeeecCC--CCCcc-cccchhhhhhHhhh--------c--CCcccCCHHHHHHHHHhcC-CceeEEE
Q 018775 271 QAIPDKSGKLVLVEIVVQED--GNNIF-GDMGLVFDLVMFAH--------T--TGGKERTEQEWMKLLEQGG-FHRCKII 336 (350)
Q Consensus 271 ~~L~~pgG~lli~e~~~~~~--~~~~~-~~~~~~~~~~~~~~--------~--~~~~~~s~~e~~~ll~~aG-f~~~~~~ 336 (350)
+.|+ |||++++.-...++. ..... .....+.++..... + + -..++.+|+++++++.| |++.++.
T Consensus 213 ~eL~-pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELI-SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEE-EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhc-cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999 999999876665553 21100 00112222211111 1 2 23458999999999985 7777654
Q ss_pred E
Q 018775 337 S 337 (350)
Q Consensus 337 ~ 337 (350)
.
T Consensus 291 ~ 291 (384)
T 2efj_A 291 T 291 (384)
T ss_dssp E
T ss_pred E
Confidence 3
No 259
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.44 E-value=5e-07 Score=85.12 Aligned_cols=97 Identities=7% Similarity=0.114 Sum_probs=70.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-----
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI----- 242 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~----- 242 (350)
.+++.++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..+++|+.+|+.+..
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 556789999999999999999987 568999999 888887764 247999999998732
Q ss_pred C--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 P--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+ .||+|++. -|...+..+++.+.+ ++ |++.+++
T Consensus 353 ~~~~fD~Vv~d-----PPr~g~~~~~~~l~~-~~-p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLD-----PARAGAAGVMQQIIK-LE-PIRIVYV 387 (433)
T ss_dssp GTTCCSEEEEC-----CCTTCCHHHHHHHHH-HC-CSEEEEE
T ss_pred hcCCCCEEEEC-----CCCccHHHHHHHHHh-cC-CCeEEEE
Confidence 1 49999983 222212345665554 57 8776665
No 260
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.40 E-value=5.4e-06 Score=75.40 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=92.0
Q ss_pred CCcceEEEecCCchHHHHHHHHH----------------CCCCcEEEecch-hHhh----hCCC---CCC---eEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS----------------YPHIKGINFDLP-HVVA----TAPV---CEG---IFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~----~a~~---~~~---i~~~~~d 237 (350)
+...+|+|+||++|..+..+... .|..+++.-|+| .... .... ..+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45689999999999776554332 466788888885 2222 2111 112 2335677
Q ss_pred CCC-CCCC--ccEEEecchhccCCh-------------------------------HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 238 MFD-AIPK--ADAVFMKWILHDWDD-------------------------------EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 238 ~~~-~~p~--~D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|.. .+|+ +|+++++..||-+++ ++...+|+..++.|+ |||++++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 777 5664 999999999996543 133456999999999 99999987
Q ss_pred eeeecCCCCCcc--cc-c----chhhhhhHhhh----------cCCcccCCHHHHHHHHHhcCC-ceeEE
Q 018775 284 EIVVQEDGNNIF--GD-M----GLVFDLVMFAH----------TTGGKERTEQEWMKLLEQGGF-HRCKI 335 (350)
Q Consensus 284 e~~~~~~~~~~~--~~-~----~~~~~~~~~~~----------~~~~~~~s~~e~~~ll~~aGf-~~~~~ 335 (350)
-...++...... .. . ..+.++..... .+ -..++.+|+++++++.|. ++.+.
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEE
Confidence 766655421100 00 0 01111111111 11 234589999999999965 66554
No 261
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.39 E-value=2.7e-07 Score=82.32 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=62.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~- 242 (350)
...+++.+. ..++.+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++++|+.+ + .
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 345555565 56788999999999999999999998889999999 888887764 2689999999876 3 1
Q ss_pred ----CCccEEEec
Q 018775 243 ----PKADAVFMK 251 (350)
Q Consensus 243 ----p~~D~i~~~ 251 (350)
..||.|++.
T Consensus 93 ~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 93 TLGIEKVDGILMD 105 (301)
T ss_dssp HTTCSCEEEEEEE
T ss_pred hcCCCCCCEEEEc
Confidence 359999874
No 262
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.38 E-value=2.3e-07 Score=84.16 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------C----CCeEEEeccCCC--C-----C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------C----EGIFHVGGDMFD--A-----I 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~----~~i~~~~~d~~~--~-----~ 242 (350)
+.+.+|||||||+|.++..+++..+ .+++.+|+ +.+++.+++ . ++++++.+|..+ . .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4678999999999999999998765 78999999 888887653 0 279999999987 2 1
Q ss_pred CCccEEEecchh-c-cCChH--HHHHHHHHH----HhhCCCCCceEEEE
Q 018775 243 PKADAVFMKWIL-H-DWDDE--ACVKILKNC----RQAIPDKSGKLVLV 283 (350)
Q Consensus 243 p~~D~i~~~~vl-h-~~~~~--~~~~~L~~~----~~~L~~pgG~lli~ 283 (350)
..||+|++--.- . ..... ....+++.+ +++|+ |||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~-pgGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK-QDGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCC-CCcEEEEE
Confidence 249999985321 1 00010 123555555 99999 99998864
No 263
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.38 E-value=2.7e-07 Score=80.34 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=62.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++.+. ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 345556665 6678899999999999999 64 444444999999 888887765 2489999999998 5543 2
Q ss_pred -----cEEEecchhccCChHHHHHHH
Q 018775 246 -----DAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 246 -----D~i~~~~vlh~~~~~~~~~~L 266 (350)
+.++.++.-++.+.+-..+++
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 355556666665544433444
No 264
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.37 E-value=3.6e-07 Score=90.99 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=73.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCC--C-C-CCccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFD--A-I-PKADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~--~-~-p~~D~i~~~~ 252 (350)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++++|+++ + . ..||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 57899999999999999988853 246999999 888887764 2 489999999987 2 2 2499999842
Q ss_pred hh--------ccCC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 IL--------HDWD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vl--------h~~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-- +.+. ......+++++.++|+ |||.|++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk-pgG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLR-AGGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 11 0111 2345688999999999 999998543
No 265
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.35 E-value=3.2e-07 Score=79.95 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..|+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345566666 6778899999999999999999874 68999998 888887764 4789999999998 553
No 266
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.35 E-value=1.8e-07 Score=82.60 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p~ 244 (350)
..+++.+. ..++.+|||||||+|.++..|+++.+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 34555555 667889999999999999999998653 45999999 888887765 3689999999998 6654
No 267
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.35 E-value=7.5e-07 Score=83.48 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=67.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++ .. ++++.+|+.+..+ .||+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35789999999999999999986 458999999 888888764 23 9999999998433 6999998432111
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.. ..+++.+. .|+ |+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~-p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REK-PGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHC-CSEEEEEE
T ss_pred hH----HHHHHHHH-hcC-CCcEEEEE
Confidence 11 13455554 479 99988874
No 268
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.34 E-value=7.9e-07 Score=78.46 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC----CCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI----PKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~----p~~D~ 247 (350)
.+.+.+||=||+|.|.++..+++..+..+++.+|+ +.+++.+++ ..|++++.+|..+-. ..||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35678999999999999999999777778999999 888886653 579999999999822 24999
Q ss_pred EEecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 248 VFMKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 248 i~~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+.-..= ..... -...+++.++++|+ |||.++..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~-p~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLN-PGGIFVAQ 197 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEE-EEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhC-CCCEEEEe
Confidence 9973211 01111 12468999999999 99998864
No 269
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.33 E-value=5.3e-07 Score=87.73 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=84.4
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH----C---------CCCc
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS----Y---------PHIK 212 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~ 212 (350)
..|+.+.+|+.+-..|.+++.... .+.++ ...+...|||||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al-------~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL-------KDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-------HHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH-------HHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 335667777777667776664421 12121 0134678999999999997533222 1 2347
Q ss_pred EEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC------C-CccEEEecchhccCChHHHHHHHHHHHhhCCCCC
Q 018775 213 GINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI------P-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKS 277 (350)
Q Consensus 213 ~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~------p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg 277 (350)
+++++- +.++..++. .++|+++.+|+.+ .. | .+|+|++...-+....+-..++|..+.+.|+ ||
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk-p~ 527 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK-PT 527 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC-TT
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC-CC
Confidence 888887 544332221 6889999999998 54 4 4999999776554444445678888899999 99
Q ss_pred ceEE
Q 018775 278 GKLV 281 (350)
Q Consensus 278 G~ll 281 (350)
|.++
T Consensus 528 Gi~i 531 (745)
T 3ua3_A 528 TISI 531 (745)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 9765
No 270
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.33 E-value=1.7e-06 Score=74.95 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=65.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D 246 (350)
++.+... +.+..+|||+|||.|.++..+++..+...++++|+ -........ ...+.....++.. .++ .+|
T Consensus 65 ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 4444433 67788999999999999998887655445555555 222111111 1133444454332 333 499
Q ss_pred EEEecchhc---cCChH-HHHHHHHHHHhhCCCCC-ceEEE
Q 018775 247 AVFMKWILH---DWDDE-ACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 247 ~i~~~~vlh---~~~~~-~~~~~L~~~~~~L~~pg-G~lli 282 (350)
+|++....+ ++-|. ....+|+.+.++|+ || |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lk-pG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLA-CGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhC-CCCCeEEE
Confidence 999976554 12122 23356899999999 99 99887
No 271
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.28 E-value=1.1e-06 Score=76.66 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCcceEEEecCCchHHHHHHHHH-------CCC-----CcEEEecc-h---hHhhhC-----------C-----------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS-------YPH-----IKGINFDL-P---HVVATA-----------P----------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~----------- 226 (350)
.+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35689999999999998887654 674 57888886 5 222211 0
Q ss_pred ---------CCCCeEEEeccCCC--C-CC-----CccEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 227 ---------VCEGIFHVGGDMFD--A-IP-----KADAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 227 ---------~~~~i~~~~~d~~~--~-~p-----~~D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
...+++++.+|..+ + .+ .||+|++- +.....|+--...+|+.+++.|+ |||+|+...
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~tys---- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATFT---- 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE-EEEEEEESC----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC-CCcEEEEEe----
Confidence 02467789999876 2 22 49999983 22211111112478999999999 999987411
Q ss_pred CCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 289 EDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
. ...+++.|.++||.+.++.-.+.-..++.++|
T Consensus 214 ----------------------a------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 214 ----------------------S------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ----------------------C------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred ----------------------C------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 0 12456778899999776554555556777665
No 272
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.27 E-value=1.7e-05 Score=71.72 Aligned_cols=142 Identities=9% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------------------------CCCeEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------------------------CEGIFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 237 (350)
.+...|+.+|||......+|...+++++++-+|.|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4578999999999999999999888999999999887664321 2689999999
Q ss_pred CCC-CC----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh
Q 018775 238 MFD-AI----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV 305 (350)
Q Consensus 238 ~~~-~~----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~ 305 (350)
+.+ +. ++ ..++++..+|++++.+++.++|+.+.+.++ +|.+++.|.+.+.....+ +...+-..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~--~~~~v~~e~i~~~~~~~~---fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS--HGLWISYDPIGGSQPNDR---FGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS--SEEEEEEEECCCCSTTCC---HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC--CcEEEEEeccCCCCCcch---HHHHHHHH
Confidence 987 22 12 678999999999999999999999999865 678888998877332222 11111111
Q ss_pred Hhh-h---cCC-cccCCHHHHHHHHHhcCCc
Q 018775 306 MFA-H---TTG-GKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 306 ~~~-~---~~~-~~~~s~~e~~~ll~~aGf~ 331 (350)
+.. . ..+ ....+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 110 0 110 1234889999999999997
No 273
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.16 E-value=6.6e-07 Score=82.48 Aligned_cols=87 Identities=8% Similarity=0.149 Sum_probs=64.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC---C--------------
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---I-------------- 242 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-------------- 242 (350)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|..+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999988753 47999999 888887764 35799999998761 1
Q ss_pred --CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 --PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 --p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..||+|++. -|. ..+.+++.+.|+ |+|+++.+.
T Consensus 292 ~~~~fD~Vv~d-----PPr---~g~~~~~~~~l~-~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVD-----PPR---SGLDSETEKMVQ-AYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEEC-----CCT---TCCCHHHHHHHT-TSSEEEEEE
T ss_pred ccCCCCEEEEC-----cCc---cccHHHHHHHHh-CCCEEEEEE
Confidence 158999862 111 134456677778 888888654
No 274
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.14 E-value=2.6e-06 Score=74.36 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-h-------hHhhhCCC-------CCCeEEEeccCCC--C-C---
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-P-------HVVATAPV-------CEGIFHVGGDMFD--A-I--- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~i~~~~~d~~~--~-~--- 242 (350)
..++.+|||+|||+|..+..+++. ..+++++|+ + .+++.++. .++++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345689999999999999999986 568999999 8 77776653 3579999999886 2 3
Q ss_pred -CCccEEEecchhccCC------------------hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 -PKADAVFMKWILHDWD------------------DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++.-.+++-. +.+...+++.+.++.+ .+++|-.+
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~---~~vvvk~p 217 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK---KRVVVKRP 217 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS---SEEEEEEE
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC---cEEEEEcC
Confidence 3599999965444321 1234456667777765 35555443
No 275
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.10 E-value=3.1e-06 Score=73.38 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=69.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCC-eEEEec-cCCC-CCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEG-IFHVGG-DMFD-AIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-i~~~~~-d~~~-~~p~ 244 (350)
..++.+.+. +.+..+|||+|||.|.++...++..+-..++++|+ ......+.. ..+ +.+... |+.. +...
T Consensus 79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 345666665 77888999999999999999887766666777777 333222221 122 333332 4433 2235
Q ss_pred ccEEEecchhccCC----h-HHHHHHHHHHHhhCCCCC--ceEEE
Q 018775 245 ADAVFMKWILHDWD----D-EACVKILKNCRQAIPDKS--GKLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~----~-~~~~~~L~~~~~~L~~pg--G~lli 282 (350)
+|+|++-...+ -+ | .....+|+-+.++|+ || |.+++
T Consensus 157 ~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk-~g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQ-EGNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEE
T ss_pred cCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcC-CCCCCcEEE
Confidence 99999965554 22 2 223357888899999 99 99887
No 276
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.04 E-value=7.2e-06 Score=81.66 Aligned_cols=110 Identities=17% Similarity=0.030 Sum_probs=75.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH------------------------------------------CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS------------------------------------------YPH 210 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------------------------------------~p~ 210 (350)
+..++.... +.++..|||.+||+|.+++..+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344455555 567789999999999999887754 133
Q ss_pred CcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC----CccEEEec--chhccCChHHHHHHHHHHHh---h
Q 018775 211 IKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP----KADAVFMK--WILHDWDDEACVKILKNCRQ---A 272 (350)
Q Consensus 211 ~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p----~~D~i~~~--~vlh~~~~~~~~~~L~~~~~---~ 272 (350)
.+++++|+ +.+++.|+. .+.|++..+|+.+ ..| .||+|+++ +-...-..++...+.+.+.+ .
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 889887764 4569999999987 222 59999996 21111113344455554444 4
Q ss_pred CCCCCceEEEEee
Q 018775 273 IPDKSGKLVLVEI 285 (350)
Q Consensus 273 L~~pgG~lli~e~ 285 (350)
+. |||+++++..
T Consensus 337 ~~-~g~~~~ilt~ 348 (703)
T 3v97_A 337 QF-GGWNLSLFSA 348 (703)
T ss_dssp HC-TTCEEEEEES
T ss_pred hC-CCCeEEEEeC
Confidence 45 7999998754
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.01 E-value=3.1e-06 Score=78.01 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=71.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C-----------------CCeEEEeccCCCC--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C-----------------EGIFHVGGDMFDA-- 241 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~~i~~~~~d~~~~-- 241 (350)
++.+|||+|||+|..++.++++.+..+++++|+ +.+++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367999999999999999999988888999999 877765543 1 2388999998762
Q ss_pred -CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 242 -IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 242 -~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+ .||+|++.- .. ....++..+.+.++ |||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk-~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAK-RRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcC-CCCEEEEEe
Confidence 22 499999632 11 12478999999999 999877754
No 278
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.94 E-value=1e-05 Score=78.13 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=75.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC------------------CCcEEEecc-hhHhhhCCC------CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP------------------HIKGINFDL-PHVVATAPV------CE 229 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 229 (350)
.+++.+. ..++.+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. ..
T Consensus 160 ~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 160 TIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3444444 45678999999999999988776431 247899999 877776542 22
Q ss_pred -----CeEEEeccCCC-C---CCCccEEEecchhccCC------------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 230 -----GIFHVGGDMFD-A---IPKADAVFMKWILHDWD------------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 230 -----~i~~~~~d~~~-~---~p~~D~i~~~~vlh~~~------------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++.+.++|.+. + .+.||+|+++--+.... .+.-..++.++.+.|+ |||++.++-
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~gGr~a~V~ 312 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVV 312 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC-CCCEEEEEe
Confidence 27889999987 3 23599999963322211 1112478999999999 999998764
No 279
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.94 E-value=1.7e-05 Score=61.76 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCcceEEEecCCch-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC----CccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTG-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP----KADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p----~~D~i~~~~vlh~~~ 258 (350)
.++.+|||||||.| ..+..|+++ .+..+++.|+ |..++ ++..|+++|.. +||+|...+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 45679999999999 588888864 3678899998 65554 89999999654 699997754 4
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+.+.+.-+.++.+... .-++|.
T Consensus 99 P~El~~~i~~lA~~v~---adliI~ 120 (153)
T 2k4m_A 99 PAEIHSSLMRVADAVG---ARLIIK 120 (153)
T ss_dssp CTTTHHHHHHHHHHHT---CEEEEE
T ss_pred CHHHHHHHHHHHHHcC---CCEEEE
Confidence 5556666667776644 555553
No 280
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.93 E-value=2.1e-06 Score=79.32 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=72.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-------CCC-eEEEeccCCC--C--CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-------CEG-IFHVGGDMFD--A--IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~--~--~p-~~D~i~ 249 (350)
.++.+|||++||+|.+++.++++.++ .+++.+|+ +..++.+++ .++ ++++.+|..+ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35789999999999999999998655 57899999 888877664 345 9999999866 2 12 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.- .. . ...+++.+.+.|+ |||.|++..
T Consensus 131 lDP--~g--~--~~~~l~~a~~~Lk-~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FG--T--PVPFIESVALSMK-RGGILSLTA 158 (392)
T ss_dssp ECC--SS--C--CHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECC--Cc--C--HHHHHHHHHHHhC-CCCEEEEEe
Confidence 854 11 1 1357899999999 999777755
No 281
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.91 E-value=2e-05 Score=70.59 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~ 249 (350)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|+.+ +. ..||+|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5678899999999999999999874 5578999999 877776653 3579999999876 22 2489998
Q ss_pred e
Q 018775 250 M 250 (350)
Q Consensus 250 ~ 250 (350)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 282
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.85 E-value=7e-05 Score=74.21 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC---CCcEEEecc-hhHhhhC--CC----------CCCeEEEeccCCCC----CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP---HIKGINFDL-PHVVATA--PV----------CEGIFHVGGDMFDA----IPK 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~~i~~~~~d~~~~----~p~ 244 (350)
.++.+|||.|||+|.++..+++..+ ..+++++|+ +.+++.| +. .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4578999999999999999998875 357899999 7776665 10 12235566677662 234
Q ss_pred ccEEEec--chhccCChHH-------------------------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMK--WILHDWDDEA-------------------------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~--~vlh~~~~~~-------------------------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+|+++ +......+.. ...++.++.+.|+ |||++.++-
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLK-pGGrLAfIl 465 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQ-DGTVISAIM 465 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcC-CCcEEEEEE
Confidence 9999995 3221111111 2347889999999 999998744
No 283
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.81 E-value=1.1e-05 Score=77.93 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=72.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC---------------CCcEEEecc-hhHhhhCCC-------CC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP---------------HIKGINFDL-PHVVATAPV-------CE 229 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~ 229 (350)
+..+++.+. ..+ .+|+|.+||+|.++..+.+... ..+++++|+ +.++..|+. ..
T Consensus 234 v~lmv~ll~--p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 234 VTLIVEMLE--PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHC--CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHh--cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 344455454 233 3999999999999988765332 467899999 877776653 23
Q ss_pred CeEEEeccCCC-C-CC--CccEEEec--chhccCChH-------------------------HHHHHHHHHHhhCCCCCc
Q 018775 230 GIFHVGGDMFD-A-IP--KADAVFMK--WILHDWDDE-------------------------ACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 230 ~i~~~~~d~~~-~-~p--~~D~i~~~--~vlh~~~~~-------------------------~~~~~L~~~~~~L~~pgG 278 (350)
++.+..+|.+. + .+ .||+|+++ +....|..+ .-..++.++.+.|+ |||
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~gG 389 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA-PTG 389 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE-EEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc-cCc
Confidence 45558899887 3 22 49999995 322222211 11268999999999 999
Q ss_pred eEEEEe
Q 018775 279 KLVLVE 284 (350)
Q Consensus 279 ~lli~e 284 (350)
++.++-
T Consensus 390 r~aiVl 395 (544)
T 3khk_A 390 SMALLL 395 (544)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 988753
No 284
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.80 E-value=8e-05 Score=64.99 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C-CCeEEEec-cCCC-CCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C-EGIFHVGG-DMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~i~~~~~-d~~~-~~p~~D~i~~~~vlh 255 (350)
+.++.+|||+||++|.++..+++..+-..+.++|+ ......... . +-+.+..+ |+.. +...+|+|++--..+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 57889999999999999999998765556677776 322221111 1 22334433 5444 223599999965544
Q ss_pred cCCh-----HHHHHHHHHHHhhCCCCC-ceEEE
Q 018775 256 DWDD-----EACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 256 ~~~~-----~~~~~~L~~~~~~L~~pg-G~lli 282 (350)
-+. .....+|.-+.+.|+ || |.+++
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~Lk-pG~G~FV~ 189 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKH-VNTENFCV 189 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCC-TTCCEEEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhc-CCCCcEEE
Confidence 221 123456888899999 99 99887
No 285
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.77 E-value=9.6e-06 Score=91.06 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-----CcEEEecc-hhHhhhCCCC---CCeEEEeccCCCC---CC-CccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-----IKGINFDL-PHVVATAPVC---EGIFHVGGDMFDA---IP-KADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~---~p-~~D~i~~~ 251 (350)
.+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.++....|..++ .+ .||+|+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 35789999999999887777766432 25677777 5666666541 1233222233332 12 49999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
++||..+ +....|+++++.|+ |||++++.+......... ...++.-. . ..+....+.++|.++|+++||.
T Consensus 1319 ~vl~~t~--~~~~~l~~~~~lL~-p~G~l~~~e~~~~~~~g~----~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A 1319 CALATLG--DPAVAVGNMAATLK-EGGFLLLHTLLAGHPLGE----MVGFLTSP--E-QGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp CC-----------------------CCEEEEEEC---------------------------------CTTTTSSTTTTEE
T ss_pred ccccccc--cHHHHHHHHHHhcC-CCcEEEEEeccccccccc----cccccccc--c-ccCCcccCHHHHHHHHHhCCCc
Confidence 9999643 34578999999999 999999877543110000 00000000 0 0002334678999999999999
Q ss_pred eeEEEE
Q 018775 332 RCKIIS 337 (350)
Q Consensus 332 ~~~~~~ 337 (350)
.+....
T Consensus 1389 ~~~~~~ 1394 (2512)
T 2vz8_A 1389 LVALKR 1394 (2512)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 877643
No 286
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.73 E-value=0.0014 Score=59.03 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=102.5
Q ss_pred CcceEEEecCCchHHHHHHHHH-CCCCcEEEecchhHhhhCC-----------------------------CCCCeEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKS-YPHIKGINFDLPHVVATAP-----------------------------VCEGIFHVG 235 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~i~~~~ 235 (350)
+...|+-+|||.=....+|... .++++++-+|.|++++.-+ ...+..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5679999999999888888875 3678899999988766311 146889999
Q ss_pred ccCCC--CC---------C-C-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhh
Q 018775 236 GDMFD--AI---------P-K-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF 302 (350)
Q Consensus 236 ~d~~~--~~---------p-~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~ 302 (350)
.|+.+ .. + + .-++++..+|.+++.+++.++|+.+.+..+ +|.+++.|.+.+... +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~--~~~~i~yE~i~p~d~------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE--RAMFINYEQVNMGDR------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS--SEEEEEEEECCTTSH------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC--CceEEEEeccCCCCH------HHHHH
Confidence 99986 11 1 1 458888999999999999999999999876 467778898854321 11111
Q ss_pred hhhHhhhcC---Cc--ccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 303 DLVMFAHTT---GG--KERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 303 ~~~~~~~~~---~~--~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
--++. ..+ .+ ...+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~-~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLR-RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHH-TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHH-HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 11111 111 01 1236788899999999999887765
No 287
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.72 E-value=0.00013 Score=66.07 Aligned_cols=129 Identities=9% Similarity=0.036 Sum_probs=84.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~ 260 (350)
+.++.++||+||++|..+..++++ +.+++++|..++........+|+++.+|.+. ..+ ++|+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 568999999999999999999987 5789999975444444446789999999998 332 499999866553 34
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce-eEEEEc
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR-CKIISM 338 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~-~~~~~~ 338 (350)
....++.+...... .++.++.+...... ...... ...+.+.+.|+..||.. +++.++
T Consensus 284 ~~~~l~~~wl~~~~-~~~aI~~lKL~mk~-------------~~~~l~-------~~~~~i~~~l~~~g~~~~l~akhL 341 (375)
T 4auk_A 284 KVAALMAQWLVNGW-CRETIFNLKLPMKK-------------RYEEVS-------HNLAYIQAQLDEHGINAQIQARQL 341 (375)
T ss_dssp HHHHHHHHHHHTTS-CSEEEEEEECCSSS-------------HHHHHH-------HHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhHHHHHHHHhccc-cceEEEEEEecccc-------------hHHHHH-------HHHHHHHHHHHhcCcchhheehhh
Confidence 44555555555555 55555433322111 000000 01466778888999863 344444
No 288
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.66 E-value=3.9e-05 Score=66.70 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCCc--ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH-------hhhCCC-----C---CCeEEEeccCCC--C-C
Q 018775 184 FDSI--QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV-------VATAPV-----C---EGIFHVGGDMFD--A-I 242 (350)
Q Consensus 184 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-----~---~~i~~~~~d~~~--~-~ 242 (350)
..++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++++|..+ + .
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 89999999999999999998 457999999 654 332221 1 579999999876 2 3
Q ss_pred C-CccEEEecchhcc
Q 018775 243 P-KADAVFMKWILHD 256 (350)
Q Consensus 243 p-~~D~i~~~~vlh~ 256 (350)
+ .||+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 4999999766554
No 289
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.64 E-value=0.00021 Score=60.02 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---C--CCCeEEEec-cCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---V--CEGIFHVGG-DMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~--~~~i~~~~~-d~~~-~~p~~ 245 (350)
..+.+.+. +.++.+|||+||++|.++...+......++.++|+ +.-.+.-. . -+.|+|+.+ |++. +.-++
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 77888999999999999998887765557899998 43333211 1 477999999 9776 33459
Q ss_pred cEEEecchhccCC---hH-HHHHHHHHHHhhCCCCCceEEE
Q 018775 246 DAVFMKWILHDWD---DE-ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~---~~-~~~~~L~~~~~~L~~pgG~lli 282 (350)
|+++|--.=..=+ ++ ....+|.-+.+.|+ + |.++|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~-~-~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLK-N-NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCS-S-CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhcc-c-CCEEE
Confidence 9999832221111 11 22346777789999 8 67766
No 290
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.51 E-value=0.00033 Score=58.29 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=60.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCC-------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDA------------- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~------------- 241 (350)
.+..+|||+||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 357899999986 44455555 45788999987 666665542 45899999995431
Q ss_pred -----------C---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 242 -----------I---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 -----------~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
. .+||+|+.-. + .....+..+.+.|+ |||.|+ +|.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg------~-k~~~~~~~~l~~l~-~GG~Iv-~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDG------R-FRVGCALATAFSIT-RPVTLL-FDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECS------S-SHHHHHHHHHHHCS-SCEEEE-ETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeC------C-CchhHHHHHHHhcC-CCeEEE-EeC
Confidence 1 3499999843 1 12355666779999 999884 444
No 291
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.51 E-value=3.2e-05 Score=71.62 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C----CCeEEEeccCCCC--C---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C----EGIFHVGGDMFDA--I---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~i~~~~~d~~~~--~---p~~D~i~~ 250 (350)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++++|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999998886 468999999 888887654 1 4799999999872 2 25999998
No 292
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.49 E-value=6.4e-05 Score=68.44 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------CCCeEEEeccCCCC-------C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------------CEGIFHVGGDMFDA-------I 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~-------~ 242 (350)
.++.+||=||+|.|..+..+++. |.-+++.+|+ |.+++.+++ .+|++++.+|..+- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999975 5578999999 888886543 25789999998751 1
Q ss_pred CCccEEEecchh-------ccCCh-HHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 PKADAVFMKWIL-------HDWDD-EACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p~~D~i~~~~vl-------h~~~~-~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..||+|+.--.= ..... --...+++.++++|+ |||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~-p~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK-QDGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE-EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 249999974211 11011 113578899999999 9998875
No 293
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.45 E-value=6.3e-05 Score=50.87 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=45.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
+..|++.|..++.++|..|||+.+|+ +...+.+.|..|...|+|.... .++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 45677777654358999999999999 8999999999999999998765 4778754
No 294
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.42 E-value=0.00055 Score=58.43 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=62.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCC-cEEEecchhH--hhhCCC-CCC---eEEEec-cCCCCCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHI-KGINFDLPHV--VATAPV-CEG---IFHVGG-DMFDAIP-K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~--~~~a~~-~~~---i~~~~~-d~~~~~p-~ 244 (350)
.++.+++ .++++.+|||+||+.|..+...++. .++ .+.+.++.-. +..... ... +.+..+ |+++..+ +
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~-~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATM-KNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhh-cCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4555564 3789999999999999999988875 122 2123332111 111110 123 356657 9998333 5
Q ss_pred ccEEEecchhccCC----hH-HHHHHHHHHHhhCCCCCc-eEEE
Q 018775 245 ADAVFMKWILHDWD----DE-ACVKILKNCRQAIPDKSG-KLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~----~~-~~~~~L~~~~~~L~~pgG-~lli 282 (350)
+|+|++-..-. -+ |. .....|.-+.+.|+ ||| .+++
T Consensus 140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk-~gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLS-RGPKEFCI 181 (269)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhh-cCCcEEEE
Confidence 99999833221 11 11 12235667778999 999 7776
No 295
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.36 E-value=0.00017 Score=62.78 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=60.4
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-C--C--
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-A--I-- 242 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~--~-- 242 (350)
.+.+.+++.+. ..++..+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|++++++|+.+ + .
T Consensus 9 VLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 9 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 34566777777 677889999999999999999998 679999999 888765542 2689999999976 2 1
Q ss_pred ---CCccEEEe
Q 018775 243 ---PKADAVFM 250 (350)
Q Consensus 243 ---p~~D~i~~ 250 (350)
..+|.|++
T Consensus 85 ~g~~~vDgIL~ 95 (285)
T 1wg8_A 85 LGVERVDGILA 95 (285)
T ss_dssp TTCSCEEEEEE
T ss_pred cCCCCcCEEEe
Confidence 24888876
No 296
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.33 E-value=0.001 Score=57.80 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC---CC--CCCeEEEec-cCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA---PV--CEGIFHVGG-DMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~--~~~i~~~~~-d~~~-~~p~~ 245 (350)
..+.+.+. +.+..+||||||++|.++...+....-.++.++|+ ..-.+.- +. -+-|.++.+ |++. +..++
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 45555655 67788999999999999998777655557889997 3322211 11 244888888 8776 33459
Q ss_pred cEEEecchhccCChH-----HHHHHHHHHHhhCCCCC-ceEEE
Q 018775 246 DAVFMKWILHDWDDE-----ACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~~~-----~~~~~L~~~~~~L~~pg-G~lli 282 (350)
|+|+|--. .--+.+ ....+|.-+.+.|+ +| |.++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~-~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLH-RGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhc-cCCCcEEE
Confidence 99988322 211221 12346777788898 88 77776
No 297
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.30 E-value=0.00072 Score=65.09 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=69.8
Q ss_pred CcceEEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-CCC-----CccE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-AIP-----KADA 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~~p-----~~D~ 247 (350)
.+.+|+|.+||+|.++..+.+.. +..+++++|+ +.++..++. .+++.+..+|.+. +.| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 57799999999999999988874 3578999999 777776642 2468899999987 322 3999
Q ss_pred EEec--chhccCChH--------------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMK--WILHDWDDE--------------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~--~vlh~~~~~--------------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+++ +. ..|... .-..++.++.+.|+.|||++.++-
T Consensus 301 IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 9985 22 112100 012478888888874688887643
No 298
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.29 E-value=0.00091 Score=59.71 Aligned_cols=147 Identities=13% Similarity=0.048 Sum_probs=94.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------CC-----c
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------PK-----A 245 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p~-----~ 245 (350)
+...||+||||-=....++.. .++++++-+|.|.+++..++ ..+..++..|+.+.. .. .
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999997777655542 12478899999988775432 567889999998621 11 3
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhh-hhh-Hhh-----hcCCccc-CC
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF-DLV-MFA-----HTTGGKE-RT 317 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~s 317 (350)
-++++..+||++++++...+|+.+.+.+. ||+.|+ +|.+.++..... .....+. ... -.. ...+-.. .+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~-~gs~l~-~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIA-VETSPLHGDEWR-EQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEE-EECCCTTCSHHH-HHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCC-CCeEEE-EEecCCCCcchh-HHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 47888999999999999999999999988 887655 565544321000 0000011 000 000 0010122 25
Q ss_pred -HHHHHHHHHhcCCceeEEEE
Q 018775 318 -EQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 318 -~~e~~~ll~~aGf~~~~~~~ 337 (350)
.++..+.|.+.||+.+ ...
T Consensus 258 ~~~~~~~~f~~~G~~~~-~~~ 277 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT-AQS 277 (310)
T ss_dssp TCCCHHHHHTTTTEEEE-EEE
T ss_pred ChHHHHHHHHHCcCccc-cCC
Confidence 7889999999999988 443
No 299
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.27 E-value=0.00019 Score=53.58 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.3
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhc--CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRI--DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
+..|++.|... +++|+.+||+.+ ++ +...+++-|+.|...|+|++.+ .+.|++|+.+..+..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHH
Confidence 45678888654 699999999999 99 8899999999999999999986 468999999874443
No 300
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.18 E-value=0.00029 Score=48.98 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=49.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcc-cHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIP-YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+-.|++.|... +|.|+.+||+.+|+ .+. .+++.|..|+..|+|.+.+. + .-.|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~---g-RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT---T-PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS---S-SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC---C-CCCeEeCHhHH
Confidence 45567777776 79999999999999 777 99999999999999997652 1 23799998775
No 301
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.11 E-value=0.00039 Score=50.57 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=52.4
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.+|..-.+..|++.| . +++++.|||+.+++ +...+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 444555677888888 5 79999999999999 8899999999999999999885 5898887653
No 302
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.98 E-value=0.00045 Score=47.96 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=46.9
Q ss_pred hcChhhhhhhCC--CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 32 ELRLADIMHSHG--SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 32 ~lglfd~L~~~~--~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
+..|++.|...+ +++|+.|||+++|+ +...+.+.|..|...|+|...+.. ++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~~----~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAGT----PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECSS----SCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC----CCceEecC
Confidence 456777776641 27999999999999 889999999999999999998632 57787664
No 303
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.93 E-value=0.0027 Score=56.07 Aligned_cols=131 Identities=22% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHH----HHHHCCCCcE--EEecchhHhhh------------------CCC--CCCe--EEEec
Q 018775 185 DSIQSLADVGGGTGGALAE----IVKSYPHIKG--INFDLPHVVAT------------------APV--CEGI--FHVGG 236 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~~------------------a~~--~~~i--~~~~~ 236 (350)
.+.-+|||+|=|+|..... +.+..|+.+. +.++. ..++. ... ..+| ++.-|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 4567999999999975433 2345676554 44442 11110 000 2344 45678
Q ss_pred cCCC---CCC--CccEEEecc-hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc
Q 018775 237 DMFD---AIP--KADAVFMKW-ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT 310 (350)
Q Consensus 237 d~~~---~~p--~~D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (350)
|+.+ .++ .+|++++-. .-..-|+--...++++++++++ |||++.- .+
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~-pgg~laT--------------------------Yt 226 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERID-EKGYWVS--------------------------YS 226 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEE-EEEEEEE--------------------------SC
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhC-CCcEEEE--------------------------Ee
Confidence 8876 233 389988732 2221122223578999999999 9998762 01
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
. ...+++-|.++||.+.++...++-..++.|.+
T Consensus 227 a------ag~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 227 S------SLSVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp C------CHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred C------cHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 1 35667889999999887766666666776654
No 304
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.91 E-value=0.00079 Score=47.12 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=46.1
Q ss_pred hcChhhhhhhCCC---CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 32 ELRLADIMHSHGS---PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~---~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+..|++.|.+. + ++|+.|||+++|+ +...+++.|..|...|+|...+.. ++.|.+.+...
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~~----~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAGT----PPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESSS----SCEEEEC----
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC----CCeeEEeCcHH
Confidence 44566677654 4 7999999999999 889999999999999999987632 57888776554
No 305
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.83 E-value=0.00074 Score=59.29 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|||.+++ +++|++.+...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHHH
Confidence 4577777765468999999999999 7889999999999999999987 57899987554
No 306
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.81 E-value=0.0027 Score=55.64 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=65.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecc-hhH--------------------------hhhCCC-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDL-PHV--------------------------VATAPV----- 227 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~----- 227 (350)
....+|||+|+..|..++.++... ++.+++++|. +.. .+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999998887654 4778888884 211 111111
Q ss_pred ---CCCeEEEeccCCC--C-CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 ---CEGIFHVGGDMFD--A-IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 ---~~~i~~~~~d~~~--~-~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.++|+++.||+.+ + .+ .+|+|.+=.-.+ +.....|..+...|+ |||.+++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~-pGGiIv~ 242 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVS-VGGYVIV 242 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcC-CCEEEEE
Confidence 3789999999987 2 32 388888743221 234578999999999 9997765
No 307
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.80 E-value=0.00086 Score=46.71 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=47.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
....|++.|.. .+.|+.|||+++|+ +...+++.|..|+..|+|.+...+ +-.|+++....
T Consensus 18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~~ 77 (82)
T 1oyi_A 18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI----PPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS----SCEEESCC---
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC----CCcceeccCcc
Confidence 45567778876 34999999999999 889999999999999999998743 56788776543
No 308
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.72 E-value=0.0048 Score=47.74 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=52.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|++.+.....+.....|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456677788654 68999999999999 889999999999999999987532111123588888887555
No 309
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.70 E-value=0.0036 Score=48.66 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=59.7
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHH-----HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALK-----SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~-----~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
++++...+..+...+.......+-. +..++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv 81 (142)
T 3ech_A 6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLV 81 (142)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCE
Confidence 3445555555555555444433333 35677788888876 69999999999999 889999999999999999
Q ss_pred eecccCCCCCCCeEecChhchhhh
Q 018775 79 AVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.+.....+.-.-.+.+|+.+..+.
T Consensus 82 ~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 82 RRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp EC----------CCEECHHHHHHH
T ss_pred eeccCCCCCCeeeeEECHHHHHHH
Confidence 987521100011356776665443
No 310
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.69 E-value=0.0017 Score=47.65 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|.--.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++.+.... ....|++|+
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l~~ 81 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRNI---KQIFYRLTE 81 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECSS---SCCEEEECS
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEECc
Confidence 34444566677777765 79999999999999 788999999999999999887520 023576664
No 311
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.66 E-value=0.042 Score=54.67 Aligned_cols=146 Identities=13% Similarity=0.177 Sum_probs=102.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCC--------CCcEEEecchhHhhhCCC------------------------------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP--------HIKGINFDLPHVVATAPV------------------------------ 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 227 (350)
+...|+-+|||.=....+|...++ +++++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 578999999999999999987755 678888888887653211
Q ss_pred CCCeEEEeccCCCC--C-----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC
Q 018775 228 CEGIFHVGGDMFDA--I-----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN 293 (350)
Q Consensus 228 ~~~i~~~~~d~~~~--~-----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~ 293 (350)
+++..++..|+.+. . ++ .-++++..+|.+++.+++.++|+.+.+. |++.+++.|.+.+.....
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~---~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM---ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS---SSEEEEEEEECCTTCTTS
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC---CCceEEEEEeecCCCCCC
Confidence 14889999999872 1 11 3478888999999999999999999853 567888889887754433
Q ss_pred cccccchhhhhhHhhhcC----C-cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 294 IFGDMGLVFDLVMFAHTT----G-GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~----~-~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
++ ...+ ...+...+ + ....+.++..+.|.+.||+.+....+
T Consensus 264 ~f---~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 PF---SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HH---HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred hH---HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 22 1111 11111110 0 12236899999999999998776654
No 312
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.66 E-value=0.001 Score=48.44 Aligned_cols=64 Identities=14% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|.--.++.++..|.+ ++.|+.|||+.+|+ +...+.+.|+.|...|++.+... +....|++++
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECH
Confidence 44555567788888876 79999999999999 88999999999999999988752 0123466654
No 313
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.63 E-value=0.00098 Score=46.10 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|+|.|+.|||+.+|+ ++..+++-|++|+..|+|.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 479999999999999 7888999999999999999985
No 314
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.63 E-value=0.001 Score=49.87 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.-.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++.+.... ....|++|+...
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~g---r~~~y~l~~~~~ 82 (114)
T 2oqg_A 20 DETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKVG---REIRYRALGAEL 82 (114)
T ss_dssp CHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECSHHH
T ss_pred ChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEecC---CEEEEEechHHH
Confidence 3455667777754 79999999999999 889999999999999999986510 012377776553
No 315
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.55 E-value=0.0042 Score=56.45 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=73.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------CCCCeEEEeccCCC-C--CC-Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------VCEGIFHVGGDMFD-A--IP-KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~i~~~~~d~~~-~--~p-~~D 246 (350)
..++.+|||+.+|.|.=+..+++..++..++..|. +.-++..+ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 67789999999999999999999877667888887 54433221 13578888888876 2 23 499
Q ss_pred EEEe----cc----hhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 247 AVFM----KW----ILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 247 ~i~~----~~----vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.|++ +. ++. .+..++. .++|+++.+.|| |||+|+-....+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-pGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK-PGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE-EEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCch
Confidence 9986 22 111 1222221 378999999999 99998866555443
No 316
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.54 E-value=0.0017 Score=49.39 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
..+|.--.++.++..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++.....+ ....|++++
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~g---r~~~y~l~~ 101 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKEG---KLALYSLGD 101 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEEC---CEEEEEECH
Confidence 3445555677888888743 79999999999999 889999999999999999987520 012476664
No 317
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.51 E-value=0.0015 Score=46.14 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=39.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.|.+. +.++++|||+.+++ ++..++|.|+.|+..|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 56777765 79999999999999 8999999999999999999984
No 318
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.51 E-value=0.0016 Score=45.11 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
|.+.|.+. +.++++|||+.+++ ++..++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 56777765 79999999999999 899999999999999999998
No 319
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.50 E-value=0.0056 Score=53.20 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=60.8
Q ss_pred CCCcceEEEecC------CchHHHHHHHHHCCC-CcEEEecchhHhhhCCCCCCeEEEeccCCC-C-CCCccEEEecc--
Q 018775 184 FDSIQSLADVGG------GTGGALAEIVKSYPH-IKGINFDLPHVVATAPVCEGIFHVGGDMFD-A-IPKADAVFMKW-- 252 (350)
Q Consensus 184 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~-~p~~D~i~~~~-- 252 (350)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+. .++.||+.+ . ..++|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 567899999996 67773 34445776 6889999855443322 458999876 2 23599998821
Q ss_pred -h-hc---cC--ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 253 -I-LH---DW--DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 -v-lh---~~--~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
. -+ .- ...-+...+.=+.+.|+ |||.|++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lk-pGGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCc-CCCEEEE
Confidence 1 11 10 11135667777889999 9999986
No 320
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.46 E-value=0.0011 Score=57.56 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=50.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..||+.+++. .++|++.+....+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHHHH
Confidence 4567777653368999999999999 88999999999999999999873 3789988755433
No 321
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.46 E-value=0.0045 Score=47.62 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+...+++++.+-|...+|... .. ++.+..||++.+ |+ +...|.+.|+.|+..|+|++.....+.
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3566777777777776666543 22 799999999999 99 889999999999999999987521111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
..-.|++|+.+..+.
T Consensus 80 r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 80 PKVEYSLTEFGRTLE 94 (131)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECHhHHHHH
Confidence 123689998887665
No 322
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.44 E-value=0.0018 Score=47.01 Aligned_cols=65 Identities=9% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++..-.++.++..|... ++.|..|||+.+|+ +...+.+.|+.|...|++.+.... ....|++|+.
T Consensus 20 ~l~~~~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~~---r~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS-PGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRDA---QRILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC-CSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS---SCEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC---CEEEEEEChH
Confidence 44445667788888663 59999999999999 889999999999999999987510 0124666654
No 323
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.43 E-value=0.0031 Score=46.69 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 12 AEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 12 ~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
..+++++.+-|...+| ..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.....+...-
T Consensus 5 ~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVIL---------XHLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHHH---------HHHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 3444544444444443 34443 699999999999 99 899999999999999999987521111113
Q ss_pred eEecChhchhh
Q 018775 91 LYKMTHISKWL 101 (350)
Q Consensus 91 ~~~~t~~s~~l 101 (350)
.|.+|+.+..+
T Consensus 71 ~y~LT~~G~~l 81 (107)
T 2hzt_A 71 EYELSEYGRSL 81 (107)
T ss_dssp EEEECTTGGGG
T ss_pred EEEECccHHHH
Confidence 58888776544
No 324
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.43 E-value=0.0012 Score=47.98 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=52.9
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.++..-.++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....++....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455566677788877543 68999999999999 889999999999999999965311111123578887664
No 325
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.42 E-value=0.0049 Score=54.96 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD 240 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~ 240 (350)
.+..++++.+. ..++..+||..||.|..+..++++. |+.+++++|. +.+++.++. .+|++++.+++.+
T Consensus 44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 34567777777 6788999999999999999999884 7889999999 888887754 5789999888776
No 326
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.38 E-value=0.0022 Score=55.12 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.++.. +++|++++....+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHHH
Confidence 3456667654358999999999999 88999999999999999999862 3789998765444
No 327
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.36 E-value=0.0022 Score=48.48 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++|.--.++.++..|.. ++.++.|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 16 ~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 16 RALADPTRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 34444456677777764 68999999999999 8899999999999999998764
No 328
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.35 E-value=0.0028 Score=54.68 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..|++.++. +++|++++...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHHH
Confidence 4566667654358999999999999 8899999999999999999984 48899887543
No 329
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.32 E-value=0.002 Score=47.69 Aligned_cols=52 Identities=10% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|..-.++.++..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3444456667777775 78999999999999 8899999999999999999875
No 330
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.29 E-value=0.012 Score=46.20 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 34567777654 68999999999999 889999999999999999987521111012467777666443
No 331
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.29 E-value=0.0063 Score=47.75 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=47.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 456677777654457899999999999 899999999999999999987521100001266777666444
No 332
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.24 E-value=0.001 Score=49.42 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|..-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|+|.+..
T Consensus 21 al~~~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHTTSTTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3334445667777765 79999999999999 8899999999999999998765
No 333
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.23 E-value=0.0048 Score=44.63 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..+.. + ++..+||..+|+ +++.+++.++.|...|++++.. +.|.+|+.+..+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHH
Confidence 4445553 5 899999999999 8999999999999999999996 6799999998555
No 334
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.18 E-value=0.003 Score=54.84 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=47.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.++. .++|++++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHHH
Confidence 4456666532368999999999999 8899999999999999999986 35899887543
No 335
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.17 E-value=0.0052 Score=42.88 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=38.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
.|++.|... +++|..|||+.+|+ +...+++.|+.|...|++.+.
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 466677654 68999999999999 889999999999999999964
No 336
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.16 E-value=0.0037 Score=54.16 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=49.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.+++ ++|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~~-------~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGSG-------GRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC-------CEEEEcHHHHHHH
Confidence 3566677543368999999999999 8899999999999999999974 8999998765444
No 337
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.14 E-value=0.016 Score=46.47 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 3456677788664 69999999999999 889999999999999999986421111012377887776444
No 338
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.13 E-value=0.0031 Score=49.94 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
..++|.--.++.|+..|.. +++|+.|||+.+|+ +...+.+.|+.|...|+|.+.... ....|++|+...
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~G---r~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKDG---RFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC---CEEEEEEChHHH
Confidence 3566667788999999985 79999999999999 889999999999999999987510 012577776543
No 339
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0059 Score=47.57 Aligned_cols=68 Identities=9% Similarity=0.124 Sum_probs=51.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 456777888654 68999999999999 889999999999999999986521111112478888776543
No 340
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.08 E-value=0.0082 Score=46.52 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-.+.+|+.+..+.
T Consensus 37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 446667777654 79999999999999 899999999999999999987521110012477887776544
No 341
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.06 E-value=0.005 Score=47.94 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=44.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++|..+||+.+++ ++..+.+.|+.|...|+|.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 8899999999999999999986 47899999876544
No 342
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.01 E-value=0.0048 Score=46.04 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCC--HHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPIT--LPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t--~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 4445566666666555554 4443 6888 99999999 99 88999999999999999999841
Q ss_pred CCCCeEecChhchhhh
Q 018775 87 GDETLYKMTHISKWLL 102 (350)
Q Consensus 87 ~~~~~~~~t~~s~~l~ 102 (350)
....|++|+.+..+.
T Consensus 79 -r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 -QITTYALTEKGMNVR 93 (111)
T ss_dssp -SSEEEEECHHHHHHH
T ss_pred -CcEEEEECccHHHHH
Confidence 125799998887554
No 343
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.96 E-value=0.0035 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.+|.--.++.|+..|.+ +|.++.|||+.+|+ +...+.+.|+.|...|+|...... ....|++++..
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~g---r~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQG---RVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEecC---CEEEEEECHHH
Confidence 345555677788888875 79999999999999 889999999999999999876520 01357777644
No 344
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.94 E-value=0.0095 Score=45.63 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++.|.++||+++++ ++..++++|+.|...|++....+ ..|.|.++..
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g----~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG----AYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC----CCCceEeCCC
Confidence 68999999999999 89999999999999999998741 1367887653
No 345
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.91 E-value=0.022 Score=44.21 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=51.0
Q ss_pred HHhcChhhhhhh-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHS-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|.. . +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 35 ~~~~~iL~~l~~~~-~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG-GDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 455677888876 4 69999999999999 889999999999999999987421111112377887776444
No 346
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.88 E-value=0.0039 Score=54.34 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=47.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..||+.+++ ++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~~-------~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATDG-------SAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEESS-------SEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecC-------CEEEEcHHHH
Confidence 4566777543368999999999999 8899999999999999999974 8999987643
No 347
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.87 E-value=0.0052 Score=45.89 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
+...+++++.+.+...+| ..|.. ++.+..|||+.+ ++ +...+.+.|+.|+..|+|.+.....+..
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 344455555455444443 34444 689999999999 99 8999999999999999999875211111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|++|+.+..+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 12488898876443
No 348
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.86 E-value=0.059 Score=42.13 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=50.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee--cccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV--HQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+ .....+...-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 456677788765 68999999999999 88999999999999999999 4311111112578888776444
No 349
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.84 E-value=0.038 Score=43.84 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=51.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345678888775 69999999999999 889999999999999999987521110012477887776444
No 350
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.81 E-value=0.01 Score=53.78 Aligned_cols=83 Identities=10% Similarity=0.004 Sum_probs=55.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---CCCCeEEEeccCCC-C-C----CC-----------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---VCEGIFHVGGDMFD-A-I----PK----------- 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~i~~~~~d~~~-~-~----p~----------- 244 (350)
++..|||||.|.|.++..|+++....+++++++ +..+...+ ..++++++.+|+++ + + .+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~ 137 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSS 137 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhccccccccccccc
Confidence 358999999999999999998744346777776 55444332 25789999999976 3 1 11
Q ss_pred ----ccEEEecchhccCChHHHHHHHHH
Q 018775 245 ----ADAVFMKWILHDWDDEACVKILKN 268 (350)
Q Consensus 245 ----~D~i~~~~vlh~~~~~~~~~~L~~ 268 (350)
-.+.+..|.-++.+.+-..++|..
T Consensus 138 ~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 138 DHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp TSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 024566676666555444455554
No 351
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.80 E-value=0.05 Score=42.07 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=50.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|. . +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 4566777777 4 79999999999999 889999999999999999987421111012367777766443
No 352
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.79 E-value=0.0065 Score=46.16 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|.--.++.++..|.+ ++.++.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3444456778888875 69999999999999 8899999999999999999765
No 353
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.77 E-value=0.016 Score=46.31 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||+++++ ++..++++|..|...||++-... ..|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG----KNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS----TTCEEECCSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeEecCCh
Confidence 68999999999999 89999999999999999987752 24679877543
No 354
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.75 E-value=0.025 Score=44.81 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 345577777654 69999999999999 889999999999999999987521111112477887776444
No 355
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=95.75 E-value=0.006 Score=41.24 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=49.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
.+-.|++.|.++|.|++..+||+.+|+ +..-+.+.|..|-..|.|.... .-+|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 355678888887799999999999999 8899999999999999999987 5678765
No 356
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.74 E-value=0.0073 Score=46.51 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
+...+++++.+.|...+|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|+..|+|.+.....+..
T Consensus 24 ~~~~~l~~l~~~w~l~IL~---------~L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILV---------ALRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp THHHHHHHHHSHHHHHHHH---------HGGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCcHHHHHH---------HHHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 4455556555555544443 3443 799999999999 79 8999999999999999999875211111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|++|+.+..+.
T Consensus 90 ~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 90 HVEYSLTPLGEQVS 103 (131)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECccHHHHH
Confidence 12699998876554
No 357
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.72 E-value=0.0063 Score=44.97 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+...+++++.+.+...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++.....+.
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 34555666665555554443 3433 6999999999995 9 889999999999999999987521111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
..-.|.+|+.+..+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 113589998876443
No 358
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.71 E-value=0.0091 Score=46.34 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 3456677777654 69999999999999 889999999999999999987521111112477887776444
No 359
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0068 Score=51.99 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=51.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..|||+.+|+ +...+.|.|+.|...|++.+.+. ...|++|+.+..+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHH
Confidence 345566666443 69999999999999 89999999999999999999753 36899999887554
No 360
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.67 E-value=0.013 Score=45.95 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 3456777888765 79999999999999 899999999999999999987421110012477777766443
No 361
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.021 Score=44.30 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 3456788888775 45 99999999999 899999999999999999987521000001478888776444
No 362
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.62 E-value=0.012 Score=46.56 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=49.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 5567777665 69999999999999 889999999999999999987521110012467777766444
No 363
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.61 E-value=0.012 Score=46.23 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.+..||++.+++ +...+.+.|+.|+..|+|++.....+. .-.|++|+.+..+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 69999999999999 889999999999999999987532111 23688898776443
No 364
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.58 E-value=0.026 Score=43.55 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=50.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 456677788765 68999999999999 788999999999999999987521111012467777766443
No 365
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.56 E-value=0.012 Score=46.89 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
+++|.++||+++++ ++..++++|..|...|+|....+ .+|.|+++.
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG----AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS----TTCEEEECS
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC----CCCceEecC
Confidence 68999999999999 89999999999999999998762 247788664
No 366
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.52 E-value=0.0097 Score=45.83 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.....+.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 456678888654 69999999999999 889999999999999999986421000011377787776443
No 367
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.52 E-value=0.045 Score=52.53 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-------------CCCcEEEecc-hhHhhhCCC------CCCeE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-------------PHIKGINFDL-PHVVATAPV------CEGIF 232 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~i~ 232 (350)
+..+++.+. ...+.+|+|-.||+|.++....+.. ....+.++|+ +.+...++- .+.-.
T Consensus 206 v~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 206 VRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 344445555 4567799999999999988765432 1356889998 766665542 23345
Q ss_pred EEeccCCC-CC------CCccEEEecchh--cc-------CC-----hHHHHHHHHHHHhhCCC------CCceEEEEe
Q 018775 233 HVGGDMFD-AI------PKADAVFMKWIL--HD-------WD-----DEACVKILKNCRQAIPD------KSGKLVLVE 284 (350)
Q Consensus 233 ~~~~d~~~-~~------p~~D~i~~~~vl--h~-------~~-----~~~~~~~L~~~~~~L~~------pgG~lli~e 284 (350)
+..+|.+. +. ..||+|+++-=+ .. ++ .+....++.++.+.|+. |||++.++-
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 67788775 32 139999985222 11 11 11123456666666641 689988754
No 368
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.52 E-value=0.013 Score=45.01 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.+.|+.|+..|++.+.....+...-.+.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 456677777765 68999999999999 889999999999999999986421111112367777776443
No 369
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.51 E-value=0.0053 Score=43.00 Aligned_cols=49 Identities=14% Similarity=0.359 Sum_probs=42.1
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..|++.|...+ ++.|++||++.+ ++ +..-++|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 4456888887543 589999999999 88 8899999999999999999875
No 370
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.47 E-value=0.033 Score=43.73 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 356677778765 69999999999999 889999999999999999987421110012477887776444
No 371
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.45 E-value=0.013 Score=45.75 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||+++++ ++..++++|..|...|+|....+ .+|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG----AKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS----SSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC----CCCCeeecCCc
Confidence 58999999999999 89999999999999999997652 24788876533
No 372
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.44 E-value=0.012 Score=42.62 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred hcChhhhhhhCCCCCCHHHH----HhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQL----ASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~el----a~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.|..+| |+.+++ +...+.+.|+.|+..|++.+.... ....|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHH
Confidence 34456666554 68999999 999999 889999999999999999986410 024577887776444
No 373
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.44 E-value=0.053 Score=42.30 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=46.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc--cCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ--SSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..| .. +++|..+||+.+++ ++..+.+.++.|+..|+|.+.. ...+.-.-.+.+|+.+..+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 45577888 43 79999999999999 8899999999999999999731 10000012356676665443
No 374
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.41 E-value=0.05 Score=42.32 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.-...+.+|+.+..+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 45567777654 69999999999999 889999999999999999986421110012367777766443
No 375
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.37 E-value=0.013 Score=51.80 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV 227 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 227 (350)
...+++.+. .++..|||++||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS---FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 344454443 46789999999999999998875 468999999 888877653
No 376
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.014 Score=45.06 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=43.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.|..+||+.+++ +...+.+.|+.|+..|+|.+.. ..|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-------DGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-------CeEEEChhHHHH
Confidence 68999999999999 8899999999999999999985 678999877644
No 377
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.28 E-value=0.012 Score=45.97 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 3456677778765 69999999999999 889999999999999999987421111013467777665443
No 378
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.25 E-value=0.0093 Score=45.32 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=41.3
Q ss_pred HhcChhhhhhhCCCC-CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSP-ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|...++| +|+.|||+.+++ +...+.|.|+.|...|+|.+..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 355677777654456 899999999999 8999999999999999999864
No 379
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.24 E-value=0.035 Score=43.78 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=48.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456688888322379999999999999 889999999999999999997521110012367777766443
No 380
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.17 E-value=0.037 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=48.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 356677888764 69999999999999 889999999999999999986421110012466777666443
No 381
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.14 E-value=0.098 Score=40.67 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=50.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 345677778765 69999999999999 889999999999999999997521111112567777766443
No 382
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.13 E-value=0.014 Score=44.96 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4566777776642 49999999999999 889999999999999999987421111012467777776444
No 383
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.12 E-value=0.021 Score=44.88 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
.+|++.+.+... .. +++|.++||+++++ ++..++++|..|...|+|....+ .|.|.++..
T Consensus 15 yAl~~L~~La~~---~~--~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~rG-----~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN---PS--SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-----PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS---CG--GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred HHHHHHHHHHhC---CC--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEccC-----CCceEeCCC
Confidence 455555555432 22 68999999999999 89999999999999999998752 367887654
No 384
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.11 E-value=0.027 Score=44.64 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456678888765 69999999999999 889999999999999999987421111112467777766443
No 385
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.07 E-value=0.024 Score=43.94 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred hcChhhhh-hhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIM-HSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L-~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.++..| ... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+
T Consensus 39 ~~~iL~~l~~~~-~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 39 RWLVLLHLARHR-DSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVL 105 (146)
T ss_dssp HHHHHHHHHHCS-SCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHH
Confidence 45567777 443 79999999999999 88999999999999999998752111001236677666544
No 386
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.97 E-value=0.015 Score=44.99 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=50.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.++.|+..|++.+.....+...-.+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 45567777665 68999999999999 889999999999999999987521111112367787776443
No 387
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.92 E-value=0.02 Score=44.00 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 45566677654 68999999999999 889999999999999999986421111012377887776444
No 388
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.91 E-value=0.019 Score=45.90 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=49.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 456677777653368999999999999 899999999999999999997521110012467777776444
No 389
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.83 E-value=0.023 Score=44.06 Aligned_cols=67 Identities=15% Similarity=0.369 Sum_probs=46.6
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
..++.++..|... ++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+
T Consensus 38 ~~~~~iL~~l~~~--~~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~ 104 (146)
T 3tgn_A 38 NTQEHILMLLSEE--SLTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPI 104 (146)
T ss_dssp HHHHHHHHHHTTC--CCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHH
Confidence 3556677788763 4999999999999 88999999999999999998752111101246666666533
No 390
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.82 E-value=0.023 Score=44.66 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+...-.+.+|+.+..+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 456677777654 68999999999999 889999999999999999986421111012467777766443
No 391
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.79 E-value=0.03 Score=43.05 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++ ++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 34556777766422 8999999999999 889999999999999999987521111012466777665443
No 392
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.78 E-value=0.028 Score=44.36 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred hhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 38 IMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 38 ~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.+... ++.|..+||+.+++ +...+.+.|+.|...|+|.+.. +..+.+|+.+..+.
T Consensus 48 ~l~~~-~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREV-GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHH-SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred HHHhC-CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 44432 68999999999999 8899999999999999999886 46788888776443
No 393
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.77 E-value=0.022 Score=40.95 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=45.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCccc-HHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPY-LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..|...+.++|..|||+.+++ ++.. +.+.++.|+..|+|..+..+ .....+.+|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~d--rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCCC--CCeEEEEECHhHHHHH
Confidence 34444443238999999999999 8899 99999999999999954311 0012467787776443
No 394
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.71 E-value=0.036 Score=43.31 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=39.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++ |.++||+++++ ++..++++|..|...|||....+ .|.|+++...
T Consensus 23 ~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~rG-----~GGy~Lar~p 68 (145)
T 1xd7_A 23 KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG-----VPGASLKKDP 68 (145)
T ss_dssp CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS-----SSSCEESSCG
T ss_pred CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeecC-----CCCceecCCH
Confidence 35 99999999999 89999999999999999998762 3678876543
No 395
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.69 E-value=0.039 Score=43.37 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=48.9
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++-.|...+++.+..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 44566666554456788999999999 899999999999999999987522110011367787776444
No 396
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.68 E-value=0.023 Score=44.59 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=50.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 48 PQYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 345677777665 68999999999999 889999999999999999987421100012477888777554
No 397
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.63 E-value=0.018 Score=43.29 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=44.1
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|....++.++..|.+ ++.|+.+||+.+++ ++..+.+.|+.|...|++.+..
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3444456778888876 58999999999999 8999999999999999998765
No 398
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.62 E-value=0.034 Score=46.62 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++++..+||+.+++ ++..+.+.|+.|...|++.+.. ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 79999999999999 8899999999999999999997 57899999887554
No 399
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.59 E-value=0.016 Score=44.42 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 345567777664 69999999999999 889999999999999999986421000001266777665443
No 400
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.55 E-value=0.031 Score=43.35 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=51.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 456677777654 68999999999999 8999999999999999999875221111224788888775543
No 401
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.53 E-value=0.056 Score=42.01 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 355667776532 69999999999999 889999999999999999987521100012356666665443
No 402
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.41 E-value=0.025 Score=40.68 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
++|..+||+.+++ +...+.++|+.|+..|+|.... ++ .+++|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~------d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL------EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE------ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC------CCCeEEEEEChhHHHHH
Confidence 3899999999999 8899999999999999994332 23 488888776544
No 403
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.41 E-value=0.02 Score=41.53 Aligned_cols=53 Identities=8% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++|.--.++.++..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++....
T Consensus 22 ~aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp HHHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEE
T ss_pred HHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheE
Confidence 334444566677443322 79999999999999 889999999999999 998664
No 404
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.30 E-value=0.022 Score=41.61 Aligned_cols=48 Identities=10% Similarity=0.377 Sum_probs=40.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|+|.+..
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 445566666543 68999999999999 8999999999999999999875
No 405
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.27 E-value=0.026 Score=43.68 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+...-.+.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 456677777654 69999999999999 889999999999999999987421000001467777776444
No 406
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=94.21 E-value=0.062 Score=36.41 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=41.5
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++.|... +..|+.+||+++|+ +...+.|.|--|...|+|.....+ +-.|+.+
T Consensus 21 i~~L~~~-~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~~----PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNTN-DYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPSN----PPKWFKN 72 (75)
T ss_dssp HHTSCTT-CEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECCS----SCEEEEC
T ss_pred HHhCCCC-cchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCCC----CCCccCC
Confidence 4466652 34999999999999 788899999999999999998632 4566654
No 407
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.98 E-value=0.054 Score=38.75 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=49.3
Q ss_pred hcChhhhhhhCCCCCCHHHHHh-hcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 32 ELRLADIMHSHGSPITLPQLAS-RIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~-~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
++.++-.|... ++.|+.+||+ ..++ +...+.|-++.|...|+|+.++ ++ ..+|+.++.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHHH
Confidence 34556667666 5999999999 9999 8899999999999999999444 23 889988875553
No 408
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.96 E-value=0.075 Score=42.34 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred HhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 31 VELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
.++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|.+..... +. .+.+|+.+..+.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeEECHHHHHHH
Confidence 456677777653 159999999999999 8899999999999999999875210 12 467777776444
No 409
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.96 E-value=0.066 Score=43.33 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=48.5
Q ss_pred HhcChhhhhhhCCCC--CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSP--ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++| +|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 356677788664332 999999999999 889999999999999999987421100012367777666443
No 410
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.92 E-value=0.017 Score=44.56 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 456677777654 68999999999999 889999999999999999987421000001367777766443
No 411
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.88 E-value=0.029 Score=42.70 Aligned_cols=68 Identities=9% Similarity=0.216 Sum_probs=49.1
Q ss_pred hcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++++|..+||+.+++ +...+.++|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566666553 158999999999999 889999999999999999986421111112467787776443
No 412
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.81 E-value=0.048 Score=45.23 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-C-CCCCCeEecChhc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-D-GGDETLYKMTHIS 98 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~-~~~~~~~~~t~~s 98 (350)
..+|..-.++.|+..|.. +|.+..+||+.+|+ +...+.+.|+.|...|+|...... . ++..-.|++|+..
T Consensus 9 lkaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 345555566677777765 79999999999999 889999999999999999986421 1 1122357777654
No 413
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=93.73 E-value=0.11 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.++|+.|+|...++ +-+..+.-|+.|-+.|-+.+.. .+|++.|
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-------SRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-------SRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECC
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-------cccccCc
Confidence 69999999999999 8899999999999999999996 7898765
No 414
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.70 E-value=0.05 Score=41.68 Aligned_cols=52 Identities=6% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEe
Confidence 456677888886544799999999998 67 88899999999999999998763
No 415
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.66 E-value=0.051 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=41.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+++.|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 44677788765 69999999999999 8899999999999999998764
No 416
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.60 E-value=0.024 Score=39.42 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=39.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|... ++.|+.||++.++ + +...+.++|+.|+..|+|.+..
T Consensus 10 ~e~~vL~~L~~~-~~~t~~ei~~~l~~~~~~---s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH-SSINTNEVIKELSKTSTW---SPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS-SSEEHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhcCCc---cHHHHHHHHHHHHHCCCeEEEe
Confidence 345566666543 6999999999996 5 6788999999999999999886
No 417
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.59 E-value=0.038 Score=34.88 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=41.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+-.|++.+..+||-+.++.+|+..|+ +..-+..+|+.|++.|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 44678888888788899999999999 889999999999999998754
No 418
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.50 E-value=0.1 Score=42.63 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 29 SAVELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 29 ~~~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+..++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 44566777777642 168999999999999 889999999999999999997522111012478888887544
No 419
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.50 E-value=0.055 Score=42.41 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677777764 69999999999999 8899999999999999998764
No 420
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.46 E-value=0.027 Score=40.89 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=40.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCC-CCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSS-CPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.|+..|-+. +++|+.||++.++.. +.+...+.++|+.|+..|+|.+..
T Consensus 36 ~e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 36 AELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp SCSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 346677777654 699999999999751 015678999999999999999986
No 421
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.44 E-value=0.022 Score=48.35 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee-cccC-CCC-CCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV-HQSS-DGG-DETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~-~~~~-~~~-~~~~~~~t~~s~ 99 (350)
..+|..-.++.|+..|.. +|+|+.+||+.+|+ +...+.+.|+.|...|+|.. .... ..| +.-.|++++...
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 344555566778888875 79999999999999 88999999999999999998 3210 001 012477776554
No 422
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.20 E-value=0.073 Score=43.73 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
.++....+..++..|.+ +++|..|||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34445567778888874 79999999999999 889999999999999999987
No 423
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.13 E-value=0.051 Score=42.57 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEEE
Confidence 355678888764 68999999999999 8899999999999999999754
No 424
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.11 E-value=0.068 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=41.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... +++|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeeec
Confidence 45677777765 69999999999999 8899999999999999999764
No 425
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.10 E-value=0.032 Score=41.19 Aligned_cols=47 Identities=13% Similarity=0.338 Sum_probs=38.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
++.++..|...|.++|..+||+.+|+ +...+++.|..|...|++...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34566666322248999999999999 889999999999999999887
No 426
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=92.82 E-value=0.13 Score=36.65 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=39.3
Q ss_pred cChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|+..|...+ .+++..+||+++++ +...+.+.|+.|+..|||.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44666666521 48999999999999 8899999999999999999664
No 427
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=92.76 E-value=0.15 Score=37.02 Aligned_cols=52 Identities=8% Similarity=0.259 Sum_probs=40.3
Q ss_pred HHHHHhcChhh-hhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 27 LKSAVELRLAD-IMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 27 l~~~~~lglfd-~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.-.++..+.+ .+.. +..+ |..+||+.+|+ +...+++-|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444555555 3433 2456 99999999999 8899999999999999999886
No 428
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=92.71 E-value=0.026 Score=42.48 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.++..|... ++.|..+||+.++ + +...+.++|+.|+..|+|.+..
T Consensus 13 ~~vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEe
Confidence 3344455432 6999999999998 6 6889999999999999999986
No 429
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=92.65 E-value=0.085 Score=42.43 Aligned_cols=48 Identities=8% Similarity=0.271 Sum_probs=41.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec
Confidence 345678888765 68999999999999 8899999999999999998754
No 430
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=92.57 E-value=0.068 Score=38.88 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++.|..|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 69999999999999 8899999999999999999975
No 431
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.50 E-value=0.077 Score=41.59 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 345677888765 69999999999999 8899999999999999998764
No 432
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.44 E-value=0.084 Score=43.14 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc-eeecccCCCCCCCeEecChh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI-FAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~t~~ 97 (350)
--...+++.|.+.++++|..|||+.+|+ +.+.+++-|+.|...|+ +.... ++|.+...
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~~-------~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP-------RGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET-------TEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEC-------CEEEECCc
Confidence 3455677888753357999999999999 89999999999999999 77643 66877653
No 433
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.40 E-value=0.15 Score=36.57 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.+..+||+.+++ +...|.|.|..|...|++.+.... ++ .+...+|+.++.+
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~~-D~-R~~v~LT~~G~~~ 87 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVEA-DG-RGHASLTQEGAAL 87 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT-TS-CEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecCC-CC-ceeEEECHHHHHH
Confidence 67899999999999 899999999999999999986431 11 2345777766543
No 434
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.39 E-value=0.09 Score=41.01 Aligned_cols=52 Identities=6% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEee
Confidence 445566888886644799999999998 66 78899999999999999999763
No 435
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=92.34 E-value=0.075 Score=41.72 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=41.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceEE
Confidence 45677788765 69999999999999 8899999999999999999754
No 436
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.31 E-value=0.057 Score=44.92 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.++|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 49 ~q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 345667777654 69999999999999 889999999999999999997521110012578888877554
No 437
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.29 E-value=0.078 Score=42.22 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=42.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|..+ +++|..+||+++|+ ++..+++-++.|...|++.+..
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeece
Confidence 356788888875 79999999999999 8899999999999999998764
No 438
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.24 E-value=0.15 Score=39.91 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=49.4
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCC----CC-CCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSD----GG-DETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~----~~-~~~~~~~t~~s~~l~ 102 (350)
.+..|+..|-..+ +..|+++|++.++ + +...+++.|+.|+..|+|++..... .+ +-..|.+|+.++...
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 4455555554321 4589999999998 8 8899999999999999999753211 11 123799999887443
No 439
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.22 E-value=0.063 Score=41.89 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=46.9
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-...+|+.+..+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 3445555321 268999999999999 899999999999999999987521100001367787776444
No 440
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.13 E-value=0.25 Score=36.90 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhcC--------CCCCCc-ccHHHHHHHhhcCCceeecccCCCCC-CCeEecCh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRID--------SSCPDI-PYLARLMRMLVRKGIFAVHQSSDGGD-ETLYKMTH 96 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~~--------~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~t~ 96 (350)
+....++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+.|+..|+|+......+++ .-.|++|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 344456666777766 6999999999883 5 78 89999999999999998864211111 23589999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.+....
T Consensus 85 ~G~~~l 90 (118)
T 2esh_A 85 QGKLYL 90 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
No 441
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.02 E-value=0.066 Score=42.00 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=41.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 45677778765 69999999999999 8899999999999999998764
No 442
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.90 E-value=0.09 Score=42.31 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=42.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|..+ +..|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeee
Confidence 456788888765 69999999999999 8899999999999999998764
No 443
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.82 E-value=0.097 Score=43.07 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|.|..|||+.+|+ +...+.+.|+.|+..|++.+..
T Consensus 23 ~~~s~~eia~~lgl---~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 23 YPPSVREIARRFRI---TPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCHHHHHHHcCC---CcHHHHHHHHHHHHCCCEEecC
Confidence 58999999999999 6668999999999999999885
No 444
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.77 E-value=0.084 Score=40.86 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=37.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++..|....+|+|..+||+.+|+ +...+.+.|+.|+..|+|.+..
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 345555311269999999999999 8899999999999999999963
No 445
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.77 E-value=0.078 Score=40.92 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=40.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 34566777654 68999999999999 8899999999999999998764
No 446
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=91.75 E-value=0.14 Score=40.09 Aligned_cols=51 Identities=14% Similarity=0.344 Sum_probs=44.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 566777888887655799999999998 56 7889999999999999999875
No 447
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=91.07 E-value=0.31 Score=42.34 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=66.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC--C--CC---CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD--A--IP---KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~--~--~p---~~D~i~~~~vl 254 (350)
...+||+=+|||.++++.++. .-+++.+|. +..++..++ ..+++++..|.++ . .| .||+|++=--.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 567899999999999999884 468888998 777665554 5689999999765 1 12 49999983211
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEEEeeeec
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~~ 288 (350)
.. ..+..++++.+.+ .+. |+|.++|.=++.+
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~-~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKF-STGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHC-TTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccC-CCeEEEEEEeccc
Confidence 10 1234455554444 234 7888888666554
No 448
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=91.04 E-value=0.12 Score=43.62 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=41.2
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+..+||+.+++ +...+.+.|+.|+..|++.+.. +..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 44999999999 8899999999999999999987 46789999887554
No 449
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=90.83 E-value=0.15 Score=39.40 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=43.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 456677888887655799999999988 45 7889999999999999999975
No 450
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=90.76 E-value=0.28 Score=42.20 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP 226 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 226 (350)
...+++.+. .++..|||..||+|.++.+..+. +.+++++|+ +..++.++
T Consensus 202 ~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 202 IERIIRASS---NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 344554443 56789999999999999988776 568999999 77776554
No 451
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.66 E-value=0.13 Score=40.07 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=39.6
Q ss_pred hcChhhhhhhCC----CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIMHSHG----SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~----~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.++..|...+ +++|..+||+.+++ ++..+.++++.|+..|+|.+..+. +.-.-...+|+.+..+
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~~-DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAGA-DARCKRIELTAKGRAA 104 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCC-CCCeeEEEECHHHHHH
Confidence 344555554321 46899999999999 899999999999999999554321 0000135666666543
No 452
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=90.57 E-value=0.12 Score=39.81 Aligned_cols=51 Identities=10% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 345566888887654 689999999998 56 7889999999999999999876
No 453
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.55 E-value=0.65 Score=39.19 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=44.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.-|.-.|.. ++.|.++||+.+|+ ++.-+...|.-|...|++.+.. ++...+.+
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~------~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN------DNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET------TTEEEECH
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec------CCeEEecH
Confidence 445556665 79999999999999 8899999999999999998776 57766543
No 454
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.52 E-value=0.081 Score=43.03 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccC--CCCCCCeEecChhchh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSS--DGGDETLYKMTHISKW 100 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~~~~t~~s~~ 100 (350)
.++|.--.++.|+..|.+ +|.|+.+||+.++ + +...+.+.|+.|...|+|+...+. .+.....|++++.+..
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 445555678889999976 7999999999996 8 778999999999999999865421 0111235777765543
Q ss_pred h
Q 018775 101 L 101 (350)
Q Consensus 101 l 101 (350)
+
T Consensus 92 ~ 92 (182)
T 4g6q_A 92 A 92 (182)
T ss_dssp S
T ss_pred C
Confidence 3
No 455
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.44 E-value=0.15 Score=39.33 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=40.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.|+..|....+++|..+|++.++ + +...+.++|+-|+..|+|.+..
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34555666654226999999999997 6 7889999999999999999986
No 456
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=90.34 E-value=0.12 Score=51.15 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-------CC-----CcEEEecc-h---hHhhhCC----------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-------PH-----IKGINFDL-P---HVVATAP---------------------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~---------------------- 226 (350)
.+.-+|+|+|-|+|.....+.+.+ |+ ++++.++. | +.+..+.
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 356799999999998887766542 33 56777774 3 2222100
Q ss_pred ---C----C--CCeEEEeccCCC--C-C-----CCccEEEecc-hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 227 ---V----C--EGIFHVGGDMFD--A-I-----PKADAVFMKW-ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 227 ---~----~--~~i~~~~~d~~~--~-~-----p~~D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+ . -++++.-||..+ + + ..+|++++-. .-+.-++--...+++.+.++++ |||++.-.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~----- 210 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR-PGGTFSTF----- 210 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE-EEEEEEES-----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC-CCCEEEec-----
Confidence 0 1 245667788865 2 2 2388887732 1111111112467889999999 98876520
Q ss_pred CCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 289 EDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. .....++.|.++||.+.++..
T Consensus 211 ----------------------~-----~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 211 ----------------------T-----AAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp ----------------------C-----CCHHHHHHHHHTTCEEEEEEC
T ss_pred ----------------------c-----CcHHHHHHHHhCCeEEEeccC
Confidence 0 124667888999998777653
No 457
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.04 E-value=0.17 Score=43.36 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++ ++|..|||+.+++ ++..+.++++-|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 44567777866432 5999999999999 899999999999999999997522110011356777776444
No 458
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=89.94 E-value=1.2 Score=40.50 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=74.0
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC-CCCeEEEeccCCC-C---C-------CCccEEEecch
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---I-------PKADAVFMKWI 253 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~-------p~~D~i~~~~v 253 (350)
.+++|+-||.|.++..+.++. .+ +..+|. +.+++..+. .....++.+|+.+ . + +.+|+++...=
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999999874 44 457787 666654443 3456778888876 2 1 35899998655
Q ss_pred hccCC--------hHHHHHHHH---HHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 254 LHDWD--------DEACVKILK---NCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 254 lh~~~--------~~~~~~~L~---~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
...++ |+ ...++. ++.+.++ | +++++|.+..-... ......+++.
T Consensus 81 CQ~fS~ag~~~~~d~-r~~L~~~~~~~v~~~~-P--~~~v~ENV~gl~s~--------------------~~~~~~~~i~ 136 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDS-RNQLYMHFYRLVSELQ-P--LFFLAENVPGIMQE--------------------KYSGIRNKAF 136 (376)
T ss_dssp CCTTC-------CHH-HHHHHHHHHHHHHHHC-C--SEEEEEECTTTTCG--------------------GGHHHHHHHH
T ss_pred CCCcccccCCCCCCc-hHHHHHHHHHHHHHhC-C--CEEEEecchHhhcc--------------------CcHHHHHHHH
Confidence 44443 22 223333 3334446 6 67777766533110 1111256777
Q ss_pred HHHHhcCCce
Q 018775 323 KLLEQGGFHR 332 (350)
Q Consensus 323 ~ll~~aGf~~ 332 (350)
.|++.||.+
T Consensus 137 -~l~~~GY~v 145 (376)
T 3g7u_A 137 -NLVSGDYDI 145 (376)
T ss_dssp -HHHHTTEEE
T ss_pred -HHHcCCCcc
Confidence 889999987
No 459
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.64 E-value=0.24 Score=37.61 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|.++||+++++ ++..+.+.|+.|+..|+|.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 8999999999999999999985
No 460
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=89.61 E-value=0.98 Score=40.53 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=72.9
Q ss_pred cceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C---CC--CccEEEecchhccC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---IP--KADAVFMKWILHDW 257 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~p--~~D~i~~~~vlh~~ 257 (350)
..+|+|+-||.|.++..+.++.-.. .+..+|. +.+++..+. .....++.+|+.+ . ++ .+|+++...=...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 4689999999999999999874222 4577787 666665543 2344577888887 2 23 58999986544433
Q ss_pred ChH--------HHHHHHHHHHhhCCCCC--ceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 258 DDE--------ACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 258 ~~~--------~~~~~L~~~~~~L~~pg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
+.. ..-.++.++.++++.-. -+++++|.+..-. . + .+.+.+.+.|++
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~--------------------~-~--~~~~~i~~~l~~ 138 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE--------------------V-S--STRDLLIQTIEN 138 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG--------------------G-S--HHHHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc--------------------C-H--HHHHHHHHHHHH
Confidence 311 11123444444443011 3566666554210 0 1 135778888999
Q ss_pred cCCceeE
Q 018775 328 GGFHRCK 334 (350)
Q Consensus 328 aGf~~~~ 334 (350)
.||.+..
T Consensus 139 ~GY~v~~ 145 (343)
T 1g55_A 139 CGFQYQE 145 (343)
T ss_dssp TTEEEEE
T ss_pred CCCeeEE
Confidence 9987654
No 461
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=89.59 E-value=0.2 Score=42.26 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.|..++|+++++ ++..+.+.++.|+..|+|.+.... -...+.+|+.+..+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHH
Confidence 57999999999999 899999999999999999998210 015788998887555
No 462
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.32 E-value=0.48 Score=35.33 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhc------CCCCCCcccHHHHHHHhhcCCceeecccC-CCCC-CCeEecChhc
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRI------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGGD-ETLYKMTHIS 98 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~-~~~~~~t~~s 98 (350)
++-.+++-|+..|.. +|.+.-+|++.+ ++ ++..+...|+.|+..|+|+..... .+++ .-.|++|+.+
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G 82 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHH
Confidence 334444455556665 799999999987 66 889999999999999999986421 1111 2358999988
Q ss_pred hhhh
Q 018775 99 KWLL 102 (350)
Q Consensus 99 ~~l~ 102 (350)
+...
T Consensus 83 ~~~l 86 (117)
T 4esf_A 83 RQEL 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7443
No 463
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.26 E-value=0.31 Score=36.36 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC------CCCCCcccHHHHHHHhhcCCceeeccc-CCCCC-CCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRID------SSCPDIPYLARLMRMLVRKGIFAVHQS-SDGGD-ETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~------~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~~-~~~~~~t~ 96 (350)
.+++-.+++-|+..|.. +|.+.-+|++.+. + ++..+...|+.|+..|+|+.... ..+++ ...|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34455566666777776 7999999998876 6 67899999999999999997642 11111 23599999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
No 464
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=89.12 E-value=0.074 Score=48.05 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
-+..++..|... +++|..|||+.+++ ++..++|.|+.|...|++.+.. ....+|+.+..+..
T Consensus 21 r~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-------SGMTLTERGLEVYQ 82 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHHH
Confidence 346677777665 69999999999999 8899999999999999998553 34678887775553
No 465
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=89.07 E-value=0.13 Score=38.70 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=39.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCC-CCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSS-CPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.++..|-.. +|+|..|||+.++.. +.+...+.++|+-|+..|+|.+..
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345556666554 699999999999731 006789999999999999999986
No 466
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=88.72 E-value=0.32 Score=36.49 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
...|.+.+.. .|.++.++|+.+++ ++..+..+|+.|+..|.+.+-. .+.|.++
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~ 61 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRN 61 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECH
Confidence 3445566654 57799999999999 8899999999999999999987 4666533
No 467
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=88.65 E-value=6.9 Score=30.10 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C------CCCccEEEecchhc
Q 018775 185 DSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A------IPKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~------~p~~D~i~~~~vlh 255 (350)
....+|+=+|||. |......+... +.+++++|. ++.++.++....+.++.+|..+ . ..++|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 4567899999873 54444444443 468889988 7777776622345566677644 1 23488887642
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++.....+..+.+.+. |..+++.
T Consensus 93 --~~~~~~~~~~~~~~~~~-~~~~iv~ 116 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMF-NVENVIA 116 (155)
T ss_dssp --SCHHHHHHHHHHHHHTS-CCSEEEE
T ss_pred --CCcHHHHHHHHHHHHHC-CCCeEEE
Confidence 23333344445555556 6555543
No 468
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=88.57 E-value=0.63 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccC-CCCC-CCeEec
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGGD-ETLYKM 94 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~-~~~~~~ 94 (350)
..++-.+++=|+..|.+ +|.+--+|++.+ ++ ++..+.+.|+.|+..|+|+..... ..++ ...|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34444455556667766 799999999887 56 889999999999999999986311 1111 235899
Q ss_pred Chhchhhh
Q 018775 95 THISKWLL 102 (350)
Q Consensus 95 t~~s~~l~ 102 (350)
|+.++...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98887443
No 469
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=88.32 E-value=1.6 Score=38.89 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC--CCCeEEEeccCCC----CCCCccEEEecchhccCC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV--CEGIFHVGGDMFD----AIPKADAVFMKWILHDWD 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~----~~p~~D~i~~~~vlh~~~ 258 (350)
..+++|+-||.|.++..+.++. .+ +..+|. +.+++..+. .... .+|+.+ ..+.+|+++...=...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence 5799999999999999998864 43 455777 665554432 1111 577776 245699998864443332
Q ss_pred ---------hHH---HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 259 ---------DEA---CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 259 ---------~~~---~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
|+. ...+++ +.+.++ | +++++|.+..-.. . ......+.+.+.|+
T Consensus 86 ~ag~~~g~~d~r~~L~~~~~r-~i~~~~-P--~~~~~ENV~gl~~------------------~--~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 86 ISGKQKGFEDSRGTLFFDIAR-IVREKK-P--KVVFMENVKNFAS------------------H--DNGNTLEVVKNTMN 141 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHH-HHHHHC-C--SEEEEEEEGGGGT------------------G--GGGHHHHHHHHHHH
T ss_pred hhcccCCCcchhhHHHHHHHH-HHHhcc-C--cEEEEeCcHHHHh------------------c--cccHHHHHHHHHHH
Confidence 111 122333 333456 6 5777776653211 0 11224678888999
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
+.||.+...
T Consensus 142 ~~GY~v~~~ 150 (327)
T 2c7p_A 142 ELDYSFHAK 150 (327)
T ss_dssp HTTBCCEEE
T ss_pred hCCCEEEEE
Confidence 999976543
No 470
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.28 E-value=0.28 Score=41.23 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.+..+||+.+++ ++..+.+.|+.|+..|++.+.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHH
Confidence 4456999999999 8899999999999999999986 56799999887554
No 471
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=88.25 E-value=0.29 Score=33.43 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.+++.++|+.+++. ..+++..+++.|++.|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 678999999999992 4689999999999999999986
No 472
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=88.13 E-value=0.18 Score=39.51 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=41.9
Q ss_pred HHHhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 345566788886544 589999999988 56 7889999999999999999875
No 473
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=87.93 E-value=0.58 Score=40.13 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=63.1
Q ss_pred CcceEEEecCCchHHHHHHHHH-------CCCCcEEEecc----hhH------------------------hh-------
Q 018775 186 SIQSLADVGGGTGGALAEIVKS-------YPHIKGINFDL----PHV------------------------VA------- 223 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 223 (350)
-...|+|+|+-.|..+..+++. .++.++.++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3569999999999988886652 46788888882 211 00
Q ss_pred hCCC----CCCeEEEeccCCCCC-------C--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 224 TAPV----CEGIFHVGGDMFDAI-------P--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 224 ~a~~----~~~i~~~~~d~~~~~-------p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+. .++|+++.|++.+.. | .+|++.+=.=. -+.....+..+...|+ |||.+++
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~-~GGvIv~ 215 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLT-KGSIVAF 215 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhC-CCcEEEE
Confidence 0011 378999999998721 2 37888774311 1234577999999999 9998876
No 474
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=87.91 E-value=0.34 Score=35.18 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=36.5
Q ss_pred ChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|+..|.. ++.+ |..+||+.+|+ +...+++-|+.|...|+|....
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444543 2455 99999999999 8899999999999999999875
No 475
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=87.78 E-value=1.8 Score=38.33 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred cceEEEecCCc-h-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCCccEEEecchhccCChHHH
Q 018775 187 IQSLADVGGGT-G-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 187 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
..+|.=||+|. | .++..|.+.....+++++|. ++.++.+.+..-+.-...|..+ .....|+|++. .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 46899999883 3 34445555533337899998 6666655432222112233333 34468999874 345556
Q ss_pred HHHHHHHHhhCCCCCceEE
Q 018775 263 VKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~ll 281 (350)
..+++++...++ |+..++
T Consensus 108 ~~vl~~l~~~l~-~~~iv~ 125 (314)
T 3ggo_A 108 REIAKKLSYILS-EDATVT 125 (314)
T ss_dssp HHHHHHHHHHSC-TTCEEE
T ss_pred HHHHHHHhhccC-CCcEEE
Confidence 788999999999 886443
No 476
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.75 E-value=0.25 Score=38.42 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecCh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTH 96 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~ 96 (350)
+.--.++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+.|+..|+|.+.... ..+ ..-.|++|+
T Consensus 38 ~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344456666777765 689999988887 47 889999999999999999886421 001 123589998
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++.+.
T Consensus 113 ~G~~~l 118 (145)
T 1xma_A 113 EGIKYY 118 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
No 477
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=87.18 E-value=0.52 Score=38.63 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+|++..+||+.+++ .++.++..++-|...|+++.+. +...+|+.+..+.
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-------CCeEECHHHHHHH
Confidence 58999999999999 8899999999999999999986 6788998887544
No 478
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=86.73 E-value=0.46 Score=42.30 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=44.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
..+++.|.+. +++|.+|||+.+++ ++..++|-|+.|...|++.+... +..|++.+.
T Consensus 8 ~~Il~~L~~~-~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~~ 63 (321)
T 1bia_A 8 LKLIALLANG-EFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHTTS-SCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECSSC
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-----CCCcEEeec
Confidence 3466777653 68999999999999 89999999999999999865432 357887643
No 479
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=86.72 E-value=0.53 Score=34.75 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 31 ~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 8899999999999999999886
No 480
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=86.62 E-value=1.7 Score=38.76 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcE--EEecc-hhHhhhCCC--CCCeEEEeccCCC-C---CC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKG--INFDL-PHVVATAPV--CEGIFHVGGDMFD-A---IP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~--~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~---~p--~~D~i~~~~v 253 (350)
....+++|+-||.|.+...+.+..-..++ ..+|. +.+++..+. ... ++.+|+.+ . ++ .+|+++...=
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCC
Confidence 34679999999999999999887432343 57888 666554432 222 56788877 2 23 4899997644
Q ss_pred hccC-----------ChHHHHHHHHHHHh-hCCCC---CceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 254 LHDW-----------DDEACVKILKNCRQ-AIPDK---SGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 254 lh~~-----------~~~~~~~~L~~~~~-~L~~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
...+ .|+. -.++.++.+ +++ - .-+++++|.+..-. . + .+.
T Consensus 86 CQ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~-~~~~~P~~~~lENV~gl~--------------------~-~--~~~ 140 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDPR-AKSVLHLYRDILP-YLINKPKHIFIENVPLFK--------------------E-S--LVF 140 (327)
T ss_dssp CTTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGG-GCSSCCSEEEEEECGGGG--------------------G-S--HHH
T ss_pred ccCcccccCCCCCCCcccc-chhHHHHHHHHHH-HhccCCCEEEEEchhhhc--------------------C-h--HHH
Confidence 4444 2222 234444444 332 1 23677777654210 0 1 135
Q ss_pred HHHHHHHHhcCCceeEE
Q 018775 319 QEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~ 335 (350)
+.+.+.|++.||.+...
T Consensus 141 ~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 141 KEIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 78888899999986544
No 481
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=86.42 E-value=0.32 Score=35.66 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhc----CCCCCCcccHHHHHHHhhcCCceeecccCCCCC-CCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRI----DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD-ETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~t~~s~~l~ 102 (350)
.+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|+..|+|+......++. ...|++|+.++...
T Consensus 9 ~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 9 LIEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 345555666665 688877777764 78 8899999999999999999864211111 12488998887443
No 482
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.03 E-value=0.68 Score=37.27 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=47.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccCC-CC-CCCeEecChhch
Q 018775 32 ELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSSD-GG-DETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~-~~~~~~~t~~s~ 99 (350)
++-|+..|.. +|.+.-||++.+ ++ +...+.+.|+-|+..|+|+...... ++ +...|++|+.++
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 4456677776 799999999998 46 7899999999999999999764321 11 123599999886
No 483
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=86.01 E-value=0.93 Score=34.35 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHHHHhcChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 12 ~i~~~I~~g~l~---~-G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 12 LIEDSIVDGTLS---I-DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHTTSSC---T-TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 344444445443 1 2456 89999999999 8899999999999999999886
No 484
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=86.01 E-value=3.1 Score=31.59 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=53.0
Q ss_pred cceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchhccC
Q 018775 187 IQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWILHDW 257 (350)
Q Consensus 187 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vlh~~ 257 (350)
..+|+=+|||. |......+.+ .+..++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----- 79 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI----- 79 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----
Confidence 45788888873 4444444433 3568999998 777776653 4677889998762 12488877632
Q ss_pred C-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 258 D-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 258 ~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+ +.....+.. ..+.+. |+.+++.
T Consensus 80 ~~~~~n~~~~~-~a~~~~-~~~~iia 103 (140)
T 3fwz_A 80 PNGYEAGEIVA-SARAKN-PDIEIIA 103 (140)
T ss_dssp SCHHHHHHHHH-HHHHHC-SSSEEEE
T ss_pred CChHHHHHHHH-HHHHHC-CCCeEEE
Confidence 2 223333344 444456 7776654
No 485
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=85.98 E-value=1.4 Score=43.41 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=71.2
Q ss_pred CcceEEEecCCchHHHHHHHHHC-------CC-----CcEEEecc-h---hHhhh-CC-----------------C----
Q 018775 186 SIQSLADVGGGTGGALAEIVKSY-------PH-----IKGINFDL-P---HVVAT-AP-----------------V---- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~-a~-----------------~---- 227 (350)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. | +.+.. .. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999998877665532 32 45777764 2 22221 00 0
Q ss_pred ---------CCCeEEEeccCCC--C-C-----CCccEEEecch-hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 228 ---------CEGIFHVGGDMFD--A-I-----PKADAVFMKWI-LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 228 ---------~~~i~~~~~d~~~--~-~-----p~~D~i~~~~v-lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.-++++.-||+.+ + + ..+|++++--+ -..-|+--...++++++++++ |||++.-.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~------ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATF------ 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE-EEEEEEES------
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC-CCCEEEec------
Confidence 1234456677765 1 2 23898887321 111111113468999999999 99887520
Q ss_pred CCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 290 DGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
.. ....++.|.++||.+.+....+
T Consensus 219 --------------------~~------~~~vr~~L~~aGf~v~~~~~~g 242 (676)
T 3ps9_A 219 --------------------TS------AGFVRRGLQDAGFTMQKRKGFG 242 (676)
T ss_dssp --------------------CC------CHHHHHHHHHHTCEEEEEECST
T ss_pred --------------------cC------cHHHHHHHHhCCeEEEeccccc
Confidence 00 2456777889999877655333
No 486
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=85.55 E-value=0.45 Score=43.16 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=45.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
+..|++.|.. +|.++++|++++|+ +...+...|-.|+-.|++.+.. +++|++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~------Gg~~~~ 381 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG------GSLVSL 381 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT------TSEEEC
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC------CceEec
Confidence 4468899975 79999999999999 8899999999999999999997 577775
No 487
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.23 E-value=0.67 Score=33.47 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
..+.++||+..|.. ++.|..|||+.+|+ +...+.|+=++|-
T Consensus 43 ~l~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHH
Confidence 34556999999986 68999999999999 7888888776664
No 488
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=85.08 E-value=0.77 Score=42.32 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCCcceEEEecCCchHHHHHHH-HHCCC-CcEEEecc-hhHhhhCCC---------C-CCeEEEeccCCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIV-KSYPH-IKGINFDL-PHVVATAPV---------C-EGIFHVGGDMFD 240 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~~i~~~~~d~~~ 240 (350)
+.++..|+|||++.|.++..++ +..+. .+++.++. |...+..++ . .++++++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3678999999999999999988 56665 78999997 766554432 2 577777655444
No 489
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=84.92 E-value=0.46 Score=44.74 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l 101 (350)
++.++..|.+.+ +++|..|||+++++ +...+.|+|+.|+..|+|.+..... +. ...+|+.++.+
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~---D~R~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQ---DERTVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCS---SSSCCEEECCSSHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC---CCCeEEEEECHHHHHH
Confidence 356777776531 58999999999999 8999999999999999999875211 22 35666666543
No 490
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=84.87 E-value=0.5 Score=42.10 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=44.5
Q ss_pred hcChhhhhhh-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 32 ELRLADIMHS-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 32 ~lglfd~L~~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
+..+++.|.+ .+.++|.++||+.+|+ +...+.+-++.|...|+..+... +..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv---Sr~aV~k~i~~L~~~G~~i~~~~-----~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI---SRTAVKKVIDQLKLEGCKIDSVN-----HKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEEET-----TTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC---CHHHHHHHHHHHHhcCCeEEEeC-----CCeEEEecC
Confidence 3456777732 1258999999999999 89999999999999999655421 467887754
No 491
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.60 E-value=0.75 Score=39.29 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=48.8
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
++.++..|...+ +++|..|||+.+++ +...+.++|+-|+..|+|.+..... +. ...+|+.+..+.
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~---DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKI---DERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSS---STTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCC---CCCeEEEEECHHHHHHH
Confidence 355667775432 58999999999999 8999999999999999999875211 22 356777776543
No 492
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=83.50 E-value=2.1 Score=38.93 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-------CCCcEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-------PHIKGINFDL 218 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 218 (350)
.+...+|+|+|+|.|.++..+++.. ..+++++++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3456789999999999999887642 3457888988
No 493
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=83.18 E-value=1.2 Score=33.13 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhc------CCCCCCcccHHHHHHHhhcCCceeeccc-CCCCC-CCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRI------DSSCPDIPYLARLMRMLVRKGIFAVHQS-SDGGD-ETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~~-~~~~~~t~ 96 (350)
.+++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|+..|+|+.... ..+++ ...|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34444455556666766 799999999987 56 88999999999999999997632 11111 23589999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++...
T Consensus 83 ~G~~~l 88 (116)
T 3hhh_A 83 SGEAEL 88 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
No 494
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=82.81 E-value=0.97 Score=34.07 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHhcChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 19 ~l~~~I~~g~~~---~-G~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 19 RIKNEVATDVLS---A-NDQLPSVRETALQEKI---NPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp HHHHHHHTTSSC---T-TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 344444444443 1 2456 89999999999 8899999999999999999886
No 495
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=82.72 E-value=5.1 Score=34.52 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=52.2
Q ss_pred ceEEEecCCc-h-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHH
Q 018775 188 QSLADVGGGT-G-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVK 264 (350)
Q Consensus 188 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~ 264 (350)
.+|.=||+|. | .++..|.+..++.+++++|. ++..+.+.+...+.....|..+.....|+|++. .+......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 5788899884 3 33445555544668888997 655554432111111223333333458988874 34555577
Q ss_pred HHHHHHhh-CCCCCceEE
Q 018775 265 ILKNCRQA-IPDKSGKLV 281 (350)
Q Consensus 265 ~L~~~~~~-L~~pgG~ll 281 (350)
+++++... ++ |+..++
T Consensus 82 v~~~l~~~~l~-~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLK-EDVIIT 98 (290)
T ss_dssp HHHHHHTSCCC-TTCEEE
T ss_pred HHHHHHhcCCC-CCCEEE
Confidence 88888888 88 775444
No 496
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=82.63 E-value=0.46 Score=36.92 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+ +.|++||.+.+.- +..+..-+.|.|+.|+..|++.+..
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 345666788887654 8999999988721 1127789999999999999999875
No 497
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=82.54 E-value=0.74 Score=35.39 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=39.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-.+++.|.+ |+.|..+||+.+|+ +-..+.-.|..|+..|.+.+..
T Consensus 14 ~~ILE~Lk~--G~~~t~~Iak~LGl---Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 14 RDILALLAD--GCKTTSLIQQRLGL---SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHh--CCccHHHHHHHhCC---cHHHHHHHHHHHHhcCceEEEE
Confidence 346777773 89999999999999 7889999999999999999986
No 498
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.48 E-value=0.77 Score=42.19 Aligned_cols=51 Identities=6% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..-+..|++.|... +++|..|||+.+|+ +...+.++++.|...|++.+.+
T Consensus 14 r~~n~~~il~~l~~~-~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHhHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence 333444577888765 79999999999999 8899999999999999999865
No 499
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=82.24 E-value=0.53 Score=42.93 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=49.3
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC--CCC-CCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS--DGG-DETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~-~~~~~~~t~~s~ 99 (350)
.+.++..-+..|++.|. . +++|..|||+.+|+ +...+.++++.|...|++.+.+.. ..| +...|++++...
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 45666677788999998 5 79999999999999 889999999999999999987531 111 223466666544
No 500
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=81.94 E-value=2.6 Score=33.98 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=55.8
Q ss_pred CCCcceEEEec--CCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C--------C--CCccEE
Q 018775 184 FDSIQSLADVG--GGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A--------I--PKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~--------~--p~~D~i 248 (350)
..++.+||.+| +|.|..+..+++.. +.++++.+. ++..+.+++ .... .. |..+ + . ..+|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~-~~--d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEY-VG--DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSE-EE--ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCE-Ee--eCCcHHHHHHHHHHhCCCCCeEE
Confidence 56788999999 46788877777754 457888887 555544433 1111 11 2222 1 1 138888
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+.+- .. ..++.+.+.|+ |+|+++++-.
T Consensus 112 i~~~-----g~----~~~~~~~~~l~-~~G~~v~~g~ 138 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILA-PGGRFIELGK 138 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEE-EEEEEEECSC
T ss_pred EECC-----ch----HHHHHHHHHhc-cCCEEEEEcC
Confidence 7532 12 35788889999 9999988654
Done!