Query 018776
Match_columns 350
No_of_seqs 222 out of 1983
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1582 UDP-galactose transpor 100.0 6.6E-55 1.4E-59 383.3 23.2 342 3-350 20-367 (367)
2 PF08449 UAA: UAA transporter 100.0 2.1E-44 4.5E-49 338.9 30.8 291 25-318 1-303 (303)
3 KOG1581 UDP-galactose transpor 100.0 2.4E-44 5.2E-49 322.5 25.9 294 20-316 10-317 (327)
4 KOG1580 UDP-galactose transpor 100.0 4.6E-45 9.9E-50 315.4 17.4 296 17-315 6-316 (337)
5 TIGR00817 tpt Tpt phosphate/ph 100.0 1.3E-32 2.9E-37 258.7 30.0 287 24-319 2-300 (302)
6 PTZ00343 triose or hexose phos 100.0 1.2E-31 2.7E-36 256.7 34.4 286 21-314 46-350 (350)
7 KOG1441 Glucose-6-phosphate/ph 100.0 1.2E-33 2.6E-38 262.2 9.4 294 20-320 13-315 (316)
8 KOG1583 UDP-N-acetylglucosamin 100.0 1.4E-32 3.1E-37 243.1 11.7 287 25-318 4-320 (330)
9 KOG1444 Nucleotide-sugar trans 100.0 1.3E-28 2.8E-33 224.1 24.1 295 20-322 8-310 (314)
10 PF06027 DUF914: Eukaryotic pr 100.0 6.3E-27 1.4E-31 219.9 27.6 292 21-321 8-314 (334)
11 KOG1443 Predicted integral mem 100.0 4.2E-27 9.2E-32 211.4 19.1 281 25-313 17-316 (349)
12 PLN00411 nodulin MtN21 family 99.9 4.1E-24 9E-29 204.5 30.4 300 32-339 21-355 (358)
13 PRK11453 O-acetylserine/cystei 99.9 4.8E-21 1E-25 179.9 33.4 272 35-315 15-290 (299)
14 COG5070 VRG4 Nucleotide-sugar 99.9 2E-23 4.3E-28 179.9 14.2 292 19-319 6-303 (309)
15 PRK11689 aromatic amino acid e 99.9 2.8E-21 6.2E-26 181.2 28.6 257 41-314 21-289 (295)
16 TIGR00950 2A78 Carboxylate/Ami 99.9 2.8E-21 6.1E-26 177.4 26.7 241 53-307 16-259 (260)
17 PRK11272 putative DMT superfam 99.9 1.5E-20 3.3E-25 176.0 30.3 248 54-315 35-288 (292)
18 KOG1442 GDP-fucose transporter 99.9 2.8E-25 6.1E-30 196.6 -1.9 293 30-326 34-341 (347)
19 PRK10532 threonine and homoser 99.9 9.6E-20 2.1E-24 170.7 29.7 279 16-317 5-286 (293)
20 PRK15430 putative chlorampheni 99.9 2.6E-19 5.6E-24 168.0 28.3 257 37-314 21-287 (296)
21 TIGR03340 phn_DUF6 phosphonate 99.8 4E-18 8.7E-23 158.7 25.1 216 84-309 62-280 (281)
22 PF04142 Nuc_sug_transp: Nucle 99.8 1.8E-18 3.9E-23 157.2 18.7 214 83-303 16-244 (244)
23 KOG2234 Predicted UDP-galactos 99.8 1.4E-17 3E-22 154.2 21.8 226 85-317 93-327 (345)
24 COG0697 RhaT Permeases of the 99.8 1.2E-15 2.5E-20 141.4 31.2 214 85-313 70-288 (292)
25 PF03151 TPT: Triose-phosphate 99.7 2E-16 4.3E-21 133.7 16.2 142 171-312 1-153 (153)
26 KOG3912 Predicted integral mem 99.7 6.9E-16 1.5E-20 137.7 19.2 224 87-313 89-335 (372)
27 TIGR00803 nst UDP-galactose tr 99.7 7.5E-17 1.6E-21 145.0 11.1 192 108-310 2-222 (222)
28 KOG2766 Predicted membrane pro 99.7 1.6E-18 3.4E-23 152.5 -4.5 282 49-342 42-330 (336)
29 TIGR00688 rarD rarD protein. T 99.7 6.5E-14 1.4E-18 128.6 25.2 229 36-287 14-255 (256)
30 KOG2765 Predicted membrane pro 99.6 1.1E-15 2.4E-20 141.6 12.0 219 94-315 169-393 (416)
31 TIGR00776 RhaT RhaT L-rhamnose 99.6 5.8E-13 1.2E-17 124.6 26.1 206 92-314 67-290 (290)
32 COG2962 RarD Predicted permeas 99.5 8.7E-12 1.9E-16 112.9 24.0 213 90-320 78-291 (293)
33 COG5006 rhtA Threonine/homoser 99.4 2.2E-10 4.7E-15 101.5 25.3 246 55-318 40-288 (292)
34 KOG4510 Permease of the drug/m 99.4 6.8E-14 1.5E-18 124.3 -0.3 214 90-314 103-327 (346)
35 PF00892 EamA: EamA-like trans 99.0 3.5E-09 7.5E-14 85.4 9.4 123 181-311 2-125 (126)
36 COG2510 Predicted membrane pro 98.9 3.6E-09 7.7E-14 84.4 6.7 134 172-311 5-138 (140)
37 PRK15430 putative chlorampheni 98.8 4.9E-07 1.1E-11 84.9 17.9 140 167-311 5-144 (296)
38 TIGR00688 rarD rarD protein. T 98.7 9.4E-07 2E-11 81.0 17.1 137 170-310 2-140 (256)
39 KOG4314 Predicted carbohydrate 98.6 3.3E-07 7.1E-12 78.7 10.9 215 89-313 58-277 (290)
40 PF00892 EamA: EamA-like trans 98.6 3E-07 6.5E-12 74.0 9.5 116 37-157 4-125 (126)
41 PF13536 EmrE: Multidrug resis 98.6 2.2E-07 4.8E-12 74.5 8.5 79 81-162 31-110 (113)
42 PF06800 Sugar_transport: Suga 98.6 1.7E-05 3.8E-10 72.5 21.3 204 90-309 51-268 (269)
43 PF05653 Mg_trans_NIPA: Magnes 98.6 7.1E-07 1.5E-11 83.7 12.0 215 89-314 54-294 (300)
44 PRK02971 4-amino-4-deoxy-L-ara 98.6 4.3E-06 9.3E-11 68.5 14.9 121 170-314 2-124 (129)
45 TIGR03340 phn_DUF6 phosphonate 98.4 3.7E-06 8.1E-11 78.2 13.3 133 172-312 3-135 (281)
46 PF13536 EmrE: Multidrug resis 98.4 1.6E-05 3.5E-10 63.6 13.5 103 211-315 7-109 (113)
47 COG2962 RarD Predicted permeas 98.2 5.8E-05 1.2E-09 69.0 14.5 141 168-314 5-146 (293)
48 PLN00411 nodulin MtN21 family 98.1 9.6E-05 2.1E-09 71.2 15.4 138 172-314 15-158 (358)
49 TIGR00950 2A78 Carboxylate/Ami 98.1 5.4E-05 1.2E-09 69.2 12.7 116 185-312 4-119 (260)
50 PRK15051 4-amino-4-deoxy-L-ara 98.0 4.7E-05 1E-09 60.8 8.5 65 92-158 45-109 (111)
51 PF03151 TPT: Triose-phosphate 97.9 0.00028 6.1E-09 59.1 13.1 66 90-157 87-152 (153)
52 TIGR00817 tpt Tpt phosphate/ph 97.9 0.00035 7.5E-09 65.7 14.6 128 177-311 9-136 (302)
53 PRK11272 putative DMT superfam 97.9 0.00047 1E-08 64.5 14.6 128 174-312 12-141 (292)
54 COG2510 Predicted membrane pro 97.8 0.00022 4.7E-09 57.3 10.0 103 54-158 30-139 (140)
55 PF08449 UAA: UAA transporter 97.8 0.00049 1.1E-08 64.8 14.0 131 184-321 14-145 (303)
56 PTZ00343 triose or hexose phos 97.8 0.00066 1.4E-08 65.3 14.9 140 168-312 47-186 (350)
57 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00026 5.7E-09 56.5 9.8 62 250-311 47-108 (111)
58 KOG2922 Uncharacterized conser 97.7 9.6E-05 2.1E-09 68.4 7.6 219 89-318 68-312 (335)
59 PRK11453 O-acetylserine/cystei 97.7 0.0013 2.9E-08 61.7 15.5 124 173-312 7-132 (299)
60 PRK11689 aromatic amino acid e 97.7 0.00088 1.9E-08 62.8 13.9 130 170-312 4-137 (295)
61 PRK10532 threonine and homoser 97.6 0.0029 6.4E-08 59.2 15.3 70 89-160 213-283 (293)
62 COG0697 RhaT Permeases of the 97.5 0.0063 1.4E-07 55.9 15.8 143 168-317 5-148 (292)
63 PRK13499 rhamnose-proton sympo 97.5 0.0036 7.7E-08 59.7 14.2 142 167-318 4-159 (345)
64 TIGR00776 RhaT RhaT L-rhamnose 97.4 0.0022 4.7E-08 60.1 12.6 132 171-314 2-138 (290)
65 PF04142 Nuc_sug_transp: Nucle 97.4 0.0017 3.6E-08 59.3 11.0 71 248-318 25-95 (244)
66 PRK10452 multidrug efflux syst 97.4 0.0015 3.3E-08 52.6 9.4 64 251-314 41-105 (120)
67 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.001 2.3E-08 54.4 8.5 72 87-160 50-124 (129)
68 PRK10452 multidrug efflux syst 97.3 0.0019 4.2E-08 52.1 8.5 72 87-160 33-105 (120)
69 PF06027 DUF914: Eukaryotic pr 97.2 0.0075 1.6E-07 57.4 13.8 77 239-316 79-155 (334)
70 PRK09541 emrE multidrug efflux 97.2 0.0039 8.4E-08 49.6 10.0 64 251-314 41-105 (110)
71 COG2076 EmrE Membrane transpor 97.2 0.0022 4.8E-08 50.2 8.1 71 87-159 33-104 (106)
72 PF04657 DUF606: Protein of un 97.1 0.023 5E-07 47.1 13.6 131 172-309 3-138 (138)
73 PRK11431 multidrug efflux syst 97.1 0.0044 9.6E-08 48.8 8.6 69 88-158 33-102 (105)
74 PRK10650 multidrug efflux syst 97.0 0.0053 1.2E-07 48.6 8.3 66 89-156 40-106 (109)
75 PRK11431 multidrug efflux syst 96.9 0.01 2.2E-07 46.8 9.5 62 251-312 40-102 (105)
76 PRK13499 rhamnose-proton sympo 96.9 0.42 9.2E-06 45.7 24.8 219 90-313 79-342 (345)
77 PRK09541 emrE multidrug efflux 96.9 0.0078 1.7E-07 47.8 8.6 69 90-160 36-105 (110)
78 PF07857 DUF1632: CEO family ( 96.9 0.0032 7E-08 57.4 7.1 76 244-319 59-141 (254)
79 PRK10650 multidrug efflux syst 96.8 0.014 3E-07 46.3 9.6 61 251-311 46-107 (109)
80 COG2076 EmrE Membrane transpor 96.8 0.012 2.6E-07 46.1 9.1 62 252-313 42-104 (106)
81 KOG2765 Predicted membrane pro 96.7 0.0027 5.9E-08 60.0 5.6 87 244-330 163-249 (416)
82 PF05653 Mg_trans_NIPA: Magnes 96.6 0.03 6.5E-07 52.7 11.7 121 167-314 4-124 (300)
83 KOG4510 Permease of the drug/m 96.3 0.0011 2.4E-08 59.9 0.5 72 243-314 100-171 (346)
84 PF06800 Sugar_transport: Suga 95.9 0.071 1.5E-06 49.1 10.0 80 240-319 45-129 (269)
85 PF00893 Multi_Drug_Res: Small 95.9 0.034 7.5E-07 42.7 6.8 54 250-303 39-93 (93)
86 KOG2234 Predicted UDP-galactos 95.8 0.53 1.1E-05 44.6 15.6 63 252-314 104-166 (345)
87 COG3238 Uncharacterized protei 95.3 0.53 1.1E-05 39.4 12.3 139 169-313 4-147 (150)
88 TIGR00803 nst UDP-galactose tr 95.2 0.091 2E-06 46.9 8.2 64 90-155 158-221 (222)
89 PF10639 UPF0546: Uncharacteri 95.2 0.026 5.7E-07 44.9 4.0 69 86-156 43-112 (113)
90 PF00893 Multi_Drug_Res: Small 95.2 0.045 9.9E-07 42.0 5.2 55 93-149 38-93 (93)
91 COG5006 rhtA Threonine/homoser 94.9 0.57 1.2E-05 42.5 11.9 62 96-159 222-283 (292)
92 PF06379 RhaT: L-rhamnose-prot 94.8 0.55 1.2E-05 44.5 12.3 143 167-318 4-159 (344)
93 KOG1441 Glucose-6-phosphate/ph 94.8 0.12 2.7E-06 48.7 8.0 137 20-160 160-309 (316)
94 COG4975 GlcU Putative glucose 94.4 0.0099 2.1E-07 53.3 -0.2 207 92-314 67-287 (288)
95 PF10639 UPF0546: Uncharacteri 92.8 0.46 1E-05 37.8 6.7 59 251-309 52-111 (113)
96 PF04657 DUF606: Protein of un 91.4 6.8 0.00015 32.3 12.5 101 54-155 29-138 (138)
97 KOG1580 UDP-galactose transpor 90.8 0.28 6E-06 44.0 3.6 66 252-317 97-162 (337)
98 KOG1581 UDP-galactose transpor 90.5 3.4 7.4E-05 38.5 10.5 127 184-317 28-160 (327)
99 COG4975 GlcU Putative glucose 87.5 0.24 5.2E-06 44.7 0.9 133 171-316 3-140 (288)
100 KOG4314 Predicted carbohydrate 87.2 0.55 1.2E-05 41.0 2.9 64 252-315 65-128 (290)
101 KOG3912 Predicted integral mem 85.6 2.3 4.9E-05 39.3 6.1 66 248-313 94-159 (372)
102 PF05297 Herpes_LMP1: Herpesvi 84.4 0.3 6.5E-06 44.7 0.0 92 112-208 51-143 (381)
103 KOG1583 UDP-N-acetylglucosamin 82.4 6.8 0.00015 36.2 7.7 121 37-159 177-315 (330)
104 PF07168 Ureide_permease: Urei 81.4 0.74 1.6E-05 42.8 1.3 64 247-313 79-147 (336)
105 KOG4831 Unnamed protein [Funct 80.1 2.3 5E-05 33.2 3.4 68 86-156 54-123 (125)
106 PF08507 COPI_assoc: COPI asso 79.3 2 4.4E-05 35.3 3.2 10 298-307 91-100 (136)
107 PRK01637 hypothetical protein; 78.6 3.9 8.4E-05 38.1 5.2 21 294-314 248-268 (286)
108 KOG1582 UDP-galactose transpor 78.1 46 0.00099 30.9 11.5 50 110-161 286-335 (367)
109 PF05684 DUF819: Protein of un 77.8 12 0.00025 36.5 8.3 8 134-141 13-20 (378)
110 KOG1444 Nucleotide-sugar trans 77.2 27 0.00059 32.9 10.1 134 171-313 13-150 (314)
111 PF04971 Lysis_S: Lysis protei 71.8 3.3 7.1E-05 29.6 2.1 25 300-324 42-66 (68)
112 PF03605 DcuA_DcuB: Anaerobic 69.6 1.1E+02 0.0024 29.5 12.8 69 263-342 142-212 (364)
113 KOG2922 Uncharacterized conser 67.9 2.7 6E-05 39.4 1.3 126 166-318 17-142 (335)
114 PF13038 DUF3899: Domain of un 67.1 3.4 7.3E-05 31.4 1.5 21 293-313 3-23 (92)
115 PF14851 FAM176: FAM176 family 65.9 5.2 0.00011 33.6 2.5 11 299-309 33-43 (153)
116 PRK06638 NADH:ubiquinone oxido 65.6 94 0.002 27.2 16.1 32 283-314 135-166 (198)
117 PRK15049 L-asparagine permease 63.0 1.2E+02 0.0026 30.5 12.3 12 338-349 480-491 (499)
118 KOG2592 Tumor differentially e 62.1 7.7 0.00017 37.4 3.2 59 289-348 293-353 (426)
119 PF14283 DUF4366: Domain of un 61.1 3.5 7.5E-05 36.9 0.6 21 303-323 170-190 (218)
120 COG3238 Uncharacterized protei 58.8 1.1E+02 0.0024 25.7 11.4 104 53-158 32-146 (150)
121 PF04342 DUF486: Protein of un 58.2 11 0.00024 29.5 2.8 29 281-309 77-105 (108)
122 COG5070 VRG4 Nucleotide-sugar 57.2 23 0.0005 31.8 5.0 67 90-158 230-296 (309)
123 PF04342 DUF486: Protein of un 56.9 45 0.00098 26.1 6.0 60 94-155 45-105 (108)
124 TIGR00939 2a57 Equilibrative N 55.1 1E+02 0.0022 30.6 10.0 18 295-312 177-194 (437)
125 PLN00028 nitrate transmembrane 55.0 2.2E+02 0.0049 28.1 13.6 19 268-286 384-402 (476)
126 PF14880 COX14: Cytochrome oxi 54.6 1.6 3.5E-05 30.4 -2.0 26 290-315 14-39 (59)
127 PF10066 DUF2304: Uncharacteri 53.3 49 0.0011 26.2 6.1 28 286-314 60-87 (115)
128 TIGR00910 2A0307_GadC glutamat 51.7 2.7E+02 0.0058 28.1 16.6 15 303-317 450-464 (507)
129 TIGR00822 EII-Sor PTS system, 50.4 2.1E+02 0.0045 26.4 16.0 20 327-346 246-265 (265)
130 COG2851 CitM H+/citrate sympor 49.7 7.2 0.00016 37.6 0.8 55 290-348 176-230 (433)
131 PF05545 FixQ: Cbb3-type cytoc 47.5 11 0.00023 25.0 1.2 20 299-318 17-36 (49)
132 PRK02237 hypothetical protein; 46.7 36 0.00079 26.8 4.1 34 125-160 74-107 (109)
133 cd01324 cbb3_Oxidase_CcoQ Cyto 46.4 15 0.00032 24.5 1.7 24 298-321 17-40 (48)
134 PF02694 UPF0060: Uncharacteri 45.5 1.5E+02 0.0032 23.3 7.7 47 268-314 59-105 (107)
135 PF02694 UPF0060: Uncharacteri 43.5 37 0.00079 26.7 3.7 34 124-159 71-104 (107)
136 COG3169 Uncharacterized protei 43.4 84 0.0018 24.3 5.5 31 280-310 83-113 (116)
137 PF10587 EF-1_beta_acid: Eukar 38.9 12 0.00025 21.9 0.2 12 336-347 3-14 (28)
138 PF06123 CreD: Inner membrane 37.9 4.2E+02 0.0091 26.3 12.9 56 135-196 320-377 (430)
139 PF05961 Chordopox_A13L: Chord 37.7 40 0.00086 24.0 2.8 23 295-317 5-27 (68)
140 PF06963 FPN1: Ferroportin1 (F 37.6 4.2E+02 0.0092 26.3 12.3 45 244-288 300-344 (432)
141 KOG1287 Amino acid transporter 37.5 4.5E+02 0.0097 26.5 14.5 50 290-339 416-471 (479)
142 KOG4112 Signal peptidase subun 37.1 95 0.0021 23.8 4.9 25 20-46 25-49 (101)
143 PF15102 TMEM154: TMEM154 prot 36.3 27 0.00058 29.0 2.1 29 297-325 66-94 (146)
144 COG4736 CcoQ Cbb3-type cytochr 36.3 21 0.00047 24.9 1.3 25 297-321 15-39 (60)
145 PF00873 ACR_tran: AcrB/AcrD/A 36.3 5E+02 0.011 28.8 12.6 61 122-184 342-403 (1021)
146 PF15345 TMEM51: Transmembrane 35.5 17 0.00037 32.5 0.9 26 297-322 66-91 (233)
147 PF00558 Vpu: Vpu protein; In 35.1 16 0.00034 27.2 0.5 13 333-345 51-63 (81)
148 PF06422 PDR_CDR: CDR ABC tran 34.9 25 0.00055 27.3 1.7 10 336-345 94-103 (103)
149 PRK13108 prolipoprotein diacyl 33.9 33 0.00072 34.3 2.7 31 292-322 254-284 (460)
150 TIGR02840 spore_YtaF putative 33.8 55 0.0012 28.9 3.8 45 264-308 31-77 (206)
151 PF06570 DUF1129: Protein of u 32.4 3.4E+02 0.0074 23.7 9.9 15 80-94 142-156 (206)
152 PRK09109 motC flagellar motor 32.2 55 0.0012 29.8 3.7 43 270-312 5-48 (246)
153 PF06679 DUF1180: Protein of u 31.9 35 0.00077 29.0 2.2 8 336-343 145-152 (163)
154 COG3715 ManY Phosphotransferas 31.9 4.2E+02 0.009 24.5 14.5 22 171-192 103-124 (265)
155 COG2116 FocA Formate/nitrite f 31.7 4.1E+02 0.0089 24.5 9.2 26 136-161 58-83 (265)
156 PRK02237 hypothetical protein; 31.5 2.6E+02 0.0057 22.0 9.4 47 268-314 61-107 (109)
157 COG2978 AbgT Putative p-aminob 30.9 38 0.00083 33.7 2.5 97 249-349 173-269 (516)
158 PRK11469 hypothetical protein; 30.8 55 0.0012 28.5 3.3 37 266-302 40-76 (188)
159 PF12606 RELT: Tumour necrosis 30.5 50 0.0011 22.2 2.3 14 302-315 13-26 (50)
160 PF14002 YniB: YniB-like prote 30.3 1.8E+02 0.004 24.6 6.0 54 295-348 76-132 (166)
161 COG5336 Uncharacterized protei 29.1 1.6E+02 0.0034 23.3 5.1 8 279-286 58-65 (116)
162 PRK11715 inner membrane protei 29.0 5.9E+02 0.013 25.4 12.7 56 135-196 326-383 (436)
163 PF01102 Glycophorin_A: Glycop 28.8 19 0.00041 29.1 0.0 8 327-334 98-105 (122)
164 PF07444 Ycf66_N: Ycf66 protei 28.6 39 0.00085 25.4 1.7 26 291-316 4-29 (84)
165 PF09656 PGPGW: Putative trans 28.4 1.9E+02 0.0042 19.6 5.9 44 142-194 5-48 (53)
166 KOG0847 Transcription factor, 28.4 26 0.00057 31.0 0.8 52 294-345 200-256 (288)
167 PF06084 Cytomega_TRL10: Cytom 27.6 35 0.00076 27.0 1.3 9 337-345 139-147 (150)
168 COG5505 Predicted integral mem 26.1 2.2E+02 0.0048 27.0 6.4 10 339-348 198-207 (384)
169 COG4298 Uncharacterized protei 26.1 52 0.0011 24.6 1.9 57 284-340 34-93 (95)
170 KOG2766 Predicted membrane pro 25.7 20 0.00043 32.9 -0.4 68 249-316 87-154 (336)
171 KOG3733 Mucolipidin and relate 25.7 51 0.0011 32.4 2.3 23 18-40 410-432 (566)
172 PF03348 Serinc: Serine incorp 25.7 71 0.0015 31.7 3.4 25 290-314 281-305 (429)
173 PHA03049 IMV membrane protein; 25.4 74 0.0016 22.6 2.5 21 296-316 6-26 (68)
174 PRK11246 hypothetical protein; 24.9 62 0.0013 28.9 2.5 6 328-333 199-204 (218)
175 PF11044 TMEMspv1-c74-12: Plec 24.9 69 0.0015 20.8 2.0 9 305-313 21-29 (49)
176 COG3162 Predicted membrane pro 24.8 2.4E+02 0.0052 21.9 5.3 44 26-69 30-77 (102)
177 TIGR00892 2A0113 monocarboxyla 24.4 6.7E+02 0.015 24.5 10.3 14 22-35 18-31 (455)
178 PRK11357 frlA putative fructos 24.0 6.8E+02 0.015 24.4 14.9 21 298-318 419-439 (445)
179 COG3274 Predicted O-acyltransf 23.8 5.9E+02 0.013 24.3 8.8 61 96-158 158-220 (332)
180 KOG1623 Multitransmembrane pro 23.7 2E+02 0.0043 26.2 5.6 17 294-310 188-204 (243)
181 PF06946 Phage_holin_5: Phage 23.5 3E+02 0.0065 21.1 5.6 26 294-319 62-87 (93)
182 PF04478 Mid2: Mid2 like cell 23.0 51 0.0011 27.7 1.5 18 331-348 102-119 (154)
183 PF05297 Herpes_LMP1: Herpesvi 22.5 27 0.00059 32.3 -0.1 65 251-315 119-187 (381)
184 PRK12437 prolipoprotein diacyl 22.4 61 0.0013 29.9 2.2 23 292-314 235-257 (269)
185 PF15108 TMEM37: Voltage-depen 22.4 4.4E+02 0.0096 22.3 6.9 47 168-214 120-166 (184)
186 PF08627 CRT-like: CRT-like; 22.3 1.7E+02 0.0036 23.8 4.2 44 22-66 55-98 (130)
187 KOG4639 RNase P/RNase MRP subu 22.0 32 0.00069 28.6 0.1 23 324-346 132-154 (154)
188 PRK08456 flagellar motor prote 21.5 1.2E+02 0.0025 27.8 3.8 43 270-312 5-48 (257)
189 COG1971 Predicted membrane pro 21.5 1.3E+02 0.0029 26.2 3.9 40 268-307 42-82 (190)
190 PF04306 DUF456: Protein of un 21.4 4.6E+02 0.01 21.5 7.6 55 253-317 47-102 (140)
191 COG2271 UhpC Sugar phosphate p 21.3 1.5E+02 0.0032 29.5 4.6 25 294-318 187-211 (448)
192 PRK13021 secF preprotein trans 21.2 5.8E+02 0.013 23.9 8.4 42 268-310 153-194 (297)
193 PF10225 DUF2215: Uncharacteri 20.5 6.5E+02 0.014 22.9 15.5 39 257-295 112-150 (249)
194 PF11022 DUF2611: Protein of u 20.4 71 0.0015 23.2 1.7 31 285-315 5-36 (71)
195 KOG2927 Membrane component of 20.3 86 0.0019 30.0 2.6 41 298-338 266-306 (372)
No 1
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-55 Score=383.32 Aligned_cols=342 Identities=46% Similarity=0.792 Sum_probs=307.4
Q ss_pred Cccccc--ccEEeeecCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-hhhHHHHHHHHHHHHHH--HHhcccC
Q 018776 3 KNEEQT--RSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFS-YGWYFTFIQGFVYLVLI--YLQGFTT 77 (350)
Q Consensus 3 ~~~~~~--~~~~~~~~~~~p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~-~p~~lt~~q~~~~~~~~--~~~~~~~ 77 (350)
++|||+ +|++|+++++.|+|+|+++|.+|+++.|+.||++||.|++..+|+ ++|.+|++|++++..+. .+++++.
T Consensus 20 ~s~e~p~ki~llg~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~ 99 (367)
T KOG1582|consen 20 ISEEQPSKIKLLGFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQT 99 (367)
T ss_pred ccccCCcceeEEeeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecc
Confidence 568899 569999999999999999999999999999999999999999996 99999999999986554 4567888
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHh
Q 018776 78 KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 157 (350)
Q Consensus 78 ~~~~~~~~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~ 157 (350)
+++..|||.|..++++..+++.++|-|+.|+|+|+++++|+|+.+|||+.+.++ -++||++.++.+..++++|.+++.
T Consensus 100 k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifI--qGkRY~v~d~~aA~lm~lGli~FT 177 (367)
T KOG1582|consen 100 KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFI--QGKRYGVHDYIAAMLMSLGLIWFT 177 (367)
T ss_pred cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeee--ccccccHHHHHHHHHHHHHHHhhh
Confidence 888999999999999999999999999999999999999999999999999999 579999999999999999999999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhch
Q 018776 158 LADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL 237 (350)
Q Consensus 158 ~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 237 (350)
..|.+.+++++..|+.++..|.++||+.+..||+.++.++. +..||++|+..++.++++.++..+||+.++|.+...||
T Consensus 178 LADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp 256 (367)
T KOG1582|consen 178 LADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHP 256 (367)
T ss_pred hcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCc
Confidence 99999889999999999999999999999999999998763 56899999999999999888899999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 238 Y-VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 238 ~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
. .+.+.++.+..+++|+.+....++.+||.+++.+++.|+.+++++|+++|.+|+|.++.-|..+++.|+++..+.|+.
T Consensus 257 ~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 257 VRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 7 677777778889999999999999999999999999999999999999999999999999999999999999998832
Q ss_pred CccccccccchhhhhhhccccchhhhhhhhcCCC
Q 018776 317 KPIKRTATSSFKVNIRKLSFSEREEADEEKRAPV 350 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (350)
+..+.. .+...+.+-. ++.|+++|+|++++|
T Consensus 337 k~~~~~--~~~r~~~~~~-g~~~~~~~r~~~~~V 367 (367)
T KOG1582|consen 337 KIPLAS--LIRRIVARAA-GKVDRSVDRKDPMLV 367 (367)
T ss_pred CCchhh--HHhhhhhhhc-cccccccccccccCC
Confidence 222111 1222233333 567788889988876
No 2
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.1e-44 Score=338.91 Aligned_cols=291 Identities=33% Similarity=0.557 Sum_probs=260.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCC-hhhHHHHHHHHHHHHHHHH--hcc-cCCCCCChhHHHHHHHHHHHhhHHH
Q 018776 25 FLICSSGFFFGYLVNGVCEEYVYNRLQFS-YGWYFTFIQGFVYLVLIYL--QGF-TTKQMMNPWKTYVKLSAVLMGSHGL 100 (350)
Q Consensus 25 l~~~~~gi~~~~~~~~~~~e~i~~~~~f~-~p~~lt~~q~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ls~~~~~~~~l 100 (350)
+++|++|+|++|+.++++||+++++.... +|++++++|++++.+.... ... ++++++.|+++|+++++++.++..+
T Consensus 1 ~~~~~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF08449_consen 1 FLICVAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVL 80 (303)
T ss_pred CEeeHHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999876555 9999999999987765443 222 2456688999999999999999999
Q ss_pred HHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCC------chHHHHHH
Q 018776 101 TKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPN------FSMIGVIM 174 (350)
Q Consensus 101 ~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~------~~~~G~~~ 174 (350)
+|.|++|+|+|+++++|+++|++||+++.++ +|||++++++++++++++|++++...|.+.+.+ ....|+++
T Consensus 81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~l 158 (303)
T PF08449_consen 81 SNAALKYISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIIL 158 (303)
T ss_pred HHHHHHhCChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999887643211 12349999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhc--cchHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 018776 175 ISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFKAWNSCSQHLYVYGVLVFEAMATFI 252 (350)
Q Consensus 175 ~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l 252 (350)
+++|.++||+++++|||++++++ .++.|+++|++++++|+.++..+. .+|..+..++...+|+.+..+++.++++++
T Consensus 159 l~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~ 237 (303)
T PF08449_consen 159 LLLSLLLDAFTGVYQEKLFKKYG-KSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGAL 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 468999999999999999887766 788888888888899888888888999999
Q ss_pred HHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCc
Q 018776 253 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 253 ~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
++.+++.+++++||++.++++++|+++++++|+++|||++++.||+|+++++.|+.+|.+.|+|+|
T Consensus 238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 3
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=322.47 Aligned_cols=294 Identities=27% Similarity=0.456 Sum_probs=267.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhcc------CCCChhhHHHHHHHHHHHHHHHH--hccc-CCCCCChhHHHHHH
Q 018776 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYNR------LQFSYGWYFTFIQGFVYLVLIYL--QGFT-TKQMMNPWKTYVKL 90 (350)
Q Consensus 20 p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~------~~f~~p~~lt~~q~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l 90 (350)
.+-.++++|+.|||++|++||++||+++++ .+|.++.++.++|.+++.++.+. ..++ +.+.++||++|..+
T Consensus 10 ~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~i 89 (327)
T KOG1581|consen 10 NKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLI 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHH
Confidence 456789999999999999999999999764 47999999999999998776543 3332 24557899999999
Q ss_pred HHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCC-----C
Q 018776 91 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS-----P 165 (350)
Q Consensus 91 s~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~-----~ 165 (350)
|+.+..+..++++||+|+|+|++++.|+|+.+|||+++.++ .|+|++..++++.+++.+||.++...+.+++ .
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~ 167 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGR 167 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCC
Confidence 99999999999999999999999999999999999999999 8999999999999999999999988754331 2
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHH
Q 018776 166 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVF 245 (350)
Q Consensus 166 ~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l 245 (350)
++++.|+.++..+.++||+.+..|+++.+++ +.+++++|++.|+++++.....++..|.+.++.++...||+.+..+++
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHH
Confidence 4789999999999999999999999999965 478999999999999998888778888888899999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 246 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 246 ~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.+.|+++||.++|+.++++||++.+++++.|+++++++|.+.|||+++..||+|+.++++|+.+-.+.|.|
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999988766
No 4
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-45 Score=315.35 Aligned_cols=296 Identities=27% Similarity=0.451 Sum_probs=262.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------CCCChhhHHHHHHHHHHHHHHHH-hcccC--CCCCChh
Q 018776 17 TDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNR---------LQFSYGWYFTFIQGFVYLVLIYL-QGFTT--KQMMNPW 84 (350)
Q Consensus 17 ~~~p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~---------~~f~~p~~lt~~q~~~~~~~~~~-~~~~~--~~~~~~~ 84 (350)
+-.|...|+++|+.||++||..||+.||+|.+. ++|++.+.+.++|+.++.++.-+ ...++ +..+.|-
T Consensus 6 s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~ 85 (337)
T KOG1580|consen 6 SWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPT 85 (337)
T ss_pred cccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcc
Confidence 446888899999999999999999999999652 36899999999999998776533 22332 2345677
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCC
Q 018776 85 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS 164 (350)
Q Consensus 85 ~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~ 164 (350)
+.|...++.|.++++.+|.|++|+|+|++++.|||+|||||+++.++ .+|+|+|+++.+++++++||+++.+.+.+..
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 88999999999999999999999999999999999999999999999 8999999999999999999999999876432
Q ss_pred ---CCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHH
Q 018776 165 ---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYG 241 (350)
Q Consensus 165 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 241 (350)
.+...+|-++.++|..+|++.+..|||+.+.+. .+..+||+|+|+++...+-..++.+||+++...|..+||..|.
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq-~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~ 242 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ-RTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFW 242 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhc-cCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHH
Confidence 234578999999999999999999999987765 3456899999999998887778889999999889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 242 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 242 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
.+.+.++++++||.++|..+..+||++.|++++.|+.++++.|+++|++|++..||+|.++++.|...-....+
T Consensus 243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 88888899999999999999999999999999999999999999999999999999999999999998876554
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.3e-32 Score=258.67 Aligned_cols=287 Identities=18% Similarity=0.188 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHHh---cccC--CCCCChhHHHHHHHHHHHhhH
Q 018776 24 QFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYLQ---GFTT--KQMMNPWKTYVKLSAVLMGSH 98 (350)
Q Consensus 24 ~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~~---~~~~--~~~~~~~~~~~~ls~~~~~~~ 98 (350)
+....+..||..+..+.++||++++ .|++|.++++.|++++.+...+. +.++ +.+++.++.+++.|++++.+.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999985 48999999999988865443321 2222 122345677788899988889
Q ss_pred HHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHH
Q 018776 99 GLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGA 178 (350)
Q Consensus 99 ~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s 178 (350)
.++|.|++|++++++++++++.|++++++++++ +|||++++++++++++++|+++....+. +++..|++++++|
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----~~~~~G~~~~l~a 153 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTEL----SFNWAGFLSAMIS 153 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCcc----cccHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999999999999999999988754332 4567899999999
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHH-HHHH----hchH-HHHHH-HHHHHHHH
Q 018776 179 LIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAW-NSCS----QHLY-VYGVL-VFEAMATF 251 (350)
Q Consensus 179 ~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~-~~~~----~~~~-~~~~l-~l~~~~~~ 251 (350)
+++++++.++.||..++. +.++.+.+.|++.+++++++|.....++..... +... ..+. .+... ..+..+..
T Consensus 154 ~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 154 NITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999987632 246788899999998888888655433221111 1101 0111 22212 22222333
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCcc
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 319 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~ 319 (350)
+.+..++.+++++||+++++.++++|++++++|++++||++|+.+++|.++++.|+++|++.|.+|++
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 45567788999999999999999999999999999999999999999999999999999987755543
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.2e-31 Score=256.66 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=222.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHH---HHhcccCCCC----CChhHHHHHHHHH
Q 018776 21 KWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI---YLQGFTTKQM----MNPWKTYVKLSAV 93 (350)
Q Consensus 21 ~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~---~~~~~~~~~~----~~~~~~~~~ls~~ 93 (350)
...+++..+..||.....+...+|++++ .+|+|++++++|++++.++. +..+.++.++ +..+++.+++|++
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLC 123 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3567888999999999999999999985 47899999999998864432 2223332211 2346678889999
Q ss_pred HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHH
Q 018776 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVI 173 (350)
Q Consensus 94 ~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~ 173 (350)
+.......+.|+++++++.++++|++.|++++++++++ +|||++++++++++++++|+.+.+.+|. +++..|++
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----~~~~~G~~ 197 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKEL----HFTWLAFW 197 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheecccc----hhHHHHHH
Confidence 87777778999999999999999999999999999999 8999999999999999999999886553 45788999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCC----CCChHhHHHHHHHhHHHHHHHHhh-ccch-HHHHHHHH----Hhch--HHHH
Q 018776 174 MISGALIMDSFLGNLQEAIFTMNP----ETTQMEMLFCSTVVGLPMLIPPML-LTGE-LFKAWNSC----SQHL--YVYG 241 (350)
Q Consensus 174 ~~l~s~~~~a~~~v~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~-~~g~-~~~~~~~~----~~~~--~~~~ 241 (350)
++++|++++++++++.|+.+++.+ +.++.+...++.+++.++++|..+ .++. ....+... .... ..+.
T Consensus 198 ~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 198 CAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH
Confidence 999999999999999999887542 234555666678888888887654 3331 11111100 0111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 242 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 242 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.++.++++.++.+...|.+++++||+++++.+++||++++++|+++|||++|+.+++|.+++++|+++|++.|
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 2233334443444555679999999999999999999999999999999999999999999999999999864
No 7
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=262.20 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=245.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHH---hcccCC---CCCChhHHHHHHHHH
Q 018776 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL---QGFTTK---QMMNPWKTYVKLSAV 93 (350)
Q Consensus 20 p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~---~~~~~~---~~~~~~~~~~~ls~~ 93 (350)
++..+..++..-||.+...+..+|++++++++|++|.++|.+|+.++.+.... .+..++ +++.++++.+++|+.
T Consensus 13 ~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~ 92 (316)
T KOG1441|consen 13 KKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLV 92 (316)
T ss_pred chhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Confidence 35667777888899999999999999998889999999999998886554332 222222 235789999999999
Q ss_pred HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHH
Q 018776 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVI 173 (350)
Q Consensus 94 ~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~ 173 (350)
++.+.+++|.|++|+++++++++|+++|+++.++++++ .+|++++..++++++++.||.+.+.+|. ++++.|++
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e~----~fn~~G~i 166 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTEL----SFNLFGFI 166 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeeccc----cccHHHHH
Confidence 99999999999999999999999999999999999999 8999999999999999999999999874 68999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh-CCCCChHhHHHHHHHhHHHHHH-HHhh-ccchHHHHHHHHHhchHHHHHHHHHHHHH
Q 018776 174 MISGALIMDSFLGNLQEAIFTM-NPETTQMEMLFCSTVVGLPMLI-PPML-LTGELFKAWNSCSQHLYVYGVLVFEAMAT 250 (350)
Q Consensus 174 ~~l~s~~~~a~~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~g~~~~~~~~~~~~~~~~~~l~l~~~~~ 250 (350)
.++++.+..++++++.|+++++ ..+.++++++.|++++++.+++ |... .+++....+.....+-..+. ..+..++.
T Consensus 167 ~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~ 245 (316)
T KOG1441|consen 167 SAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-LLLNSVLA 245 (316)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-HHHHHHHH
Confidence 9999999999999999999863 3446889999999999998888 6543 23332200000000111222 23334888
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccc
Q 018776 251 FIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 320 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~ 320 (350)
+..|+..|.+++++||+|.++.+++|.++.++.|+++|++++|+.|..|+++.+.|+++|++.|.++|++
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 8889999999999999999999999999999999999999999999999999999999999999877754
No 8
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=243.12 Aligned_cols=287 Identities=24% Similarity=0.377 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHH--HHHhcccCCCCCChhHHHHHHHHHHHhhHHHHH
Q 018776 25 FLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVL--IYLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTK 102 (350)
Q Consensus 25 l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~~ 102 (350)
-+..+++++.+||.+.+..|.+.+. .....+.+|+.|+++-..- .+-..+...+++.|.|.|+..-..+...++++|
T Consensus 4 a~~ai~~vf~GCcsnvv~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN 82 (330)
T KOG1583|consen 4 AAAAISLVFGGCCSNVVFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNN 82 (330)
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeecc
Confidence 3456788999999999999999754 4467899999998764321 222334445578999999988777888999999
Q ss_pred hhhhc-CchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCC---C------CC----C--
Q 018776 103 GSLAF-LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ---T------SP----N-- 166 (350)
Q Consensus 103 ~al~~-~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~---~------~~----~-- 166 (350)
+++++ ++.|.++++|+.+++.+|++++++ .||||+.+|+.+++++++|+++..+.... . .+ +
T Consensus 83 ~al~f~I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~ 160 (330)
T KOG1583|consen 83 YALKFNIPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFF 160 (330)
T ss_pred ceeeecccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccch
Confidence 99999 999999999999999999999999 89999999999999999999998764321 1 01 1
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhc----------
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH---------- 236 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~---------- 236 (350)
....|+.+...+.+.+|..+++||+.++++++ ++.|.+||++..++|.++ +..+++.+.+.....+
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-h~~EalFytH~LsLP~Fl---f~~~div~~~~~~~~se~~~~p~~g~ 236 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGK-HWKEALFYTHFLSLPLFL---FMGDDIVSHWRLAFKSESYLIPLLGF 236 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhccchHH---HhcchHHHHHHHHhcCcceeccccCc
Confidence 24689999999999999999999999999986 588999999999999875 3455666655543322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 237 --LYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 237 --~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
|..|.+++.+++.++++.-..+.+..+++++|++++-++||.+++++|++.|++|+|+++|+|..++++|..+|.-..
T Consensus 237 ~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 237 KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776667888899999999999999999999999999999999999999999999999997654
Q ss_pred CCCc
Q 018776 315 DDKP 318 (350)
Q Consensus 315 ~~~~ 318 (350)
.+.|
T Consensus 317 ~~~~ 320 (330)
T KOG1583|consen 317 NHPK 320 (330)
T ss_pred cCcc
Confidence 4333
No 9
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=224.08 Aligned_cols=295 Identities=18% Similarity=0.233 Sum_probs=244.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHH-h--cc--cCCCCCChhHHHHHHHHHH
Q 018776 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-Q--GF--TTKQMMNPWKTYVKLSAVL 94 (350)
Q Consensus 20 p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~-~--~~--~~~~~~~~~~~~~~ls~~~ 94 (350)
|+..+-+..+++-..+.+.-.+.||.+.++++||...++.+.|.+++++..+. + +. .++-.....|+|+++++++
T Consensus 8 ~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 8 KKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH
Confidence 44444444555555566666788999999999998888889999998766544 2 21 1222345568899999999
Q ss_pred HhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHH
Q 018776 95 MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIM 174 (350)
Q Consensus 95 ~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~ 174 (350)
.++...+..+++|+|+|+++++|+.+|+.|++.+.++ +|+|+++..|.++..+.+|....+.+|. .++..|+.|
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY~w 161 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGYSW 161 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccc----eecchhHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999999988885 467789999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHH---HhchHHHHHHHHHHHHHH
Q 018776 175 ISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSC---SQHLYVYGVLVFEAMATF 251 (350)
Q Consensus 175 ~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~---~~~~~~~~~l~l~~~~~~ 251 (350)
++.++++.+.+.++.|+..+.. +.+.+++++|++++++|.+....+.+||+. ...+. +..+..+..+.+++++++
T Consensus 162 ~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf 239 (314)
T KOG1444|consen 162 ALANCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGF 239 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999998876643 346789999999999999888778888876 33322 122345667888999998
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccccc
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT 322 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~ 322 (350)
.-.++.++|.+..||+|.+++|...+..+.+..++++|+++++.+.+|+.+.+.|..+|++.+.|+|+.++
T Consensus 240 ~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 240 GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 88999999999999999999997777777777777888999999999999999999999999977765544
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=6.3e-27 Score=219.93 Aligned_cols=292 Identities=15% Similarity=0.213 Sum_probs=220.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHhhhhhccCCCChhhHHHHHHHHHHHHHHHH-hcccC------CCCCChhHHHHHHH
Q 018776 21 KWQQFLICSSGFFFGYLVNG--VCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL-QGFTT------KQMMNPWKTYVKLS 91 (350)
Q Consensus 21 ~~~~l~~~~~gi~~~~~~~~--~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~-~~~~~------~~~~~~~~~~~~ls 91 (350)
+|+.+...+.|-..+.+..+ .....+-++ +++.|.+-++..++...++... ..+|+ ...+.+|++|+.++
T Consensus 8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla 86 (334)
T PF06027_consen 8 TRRFWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHH
Confidence 44555556666666655444 444445333 8888987777665543222111 11111 12357899999999
Q ss_pred HHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCC-----CCC
Q 018776 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----SPN 166 (350)
Q Consensus 92 ~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~-----~~~ 166 (350)
++...++.+.+.|++|++++..+++.++..++++++++++ +|+|+++.|+++++++++|+.++...|... +++
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~ 164 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGS 164 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCC
Confidence 9999999999999999999999999999999999999999 999999999999999999999998887532 234
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHh-hccchHHHHHHHHHhchHHHHHHHH
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-LLTGELFKAWNSCSQHLYVYGVLVF 245 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~~~~~~~~~l~l 245 (350)
+...|+++++++++++|++++++|+..++. +..+.+....++++++..+.. +++.+-. +....++.....+..
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~~i---~~~~w~~~~~~~~v~ 238 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERSGI---ESIHWTSQVIGLLVG 238 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehhhh---hccCCChhhHHHHHH
Confidence 679999999999999999999999988764 467777777778877766543 3332211 111223333444444
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCcccc
Q 018776 246 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 321 (350)
Q Consensus 246 ~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~ 321 (350)
.+++.++.+......++..||+..++-.......+++.++++||+++++..++|.++++.|..+|...+.+..+++
T Consensus 239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 4555555566677889999999999988899999999999999999999999999999999999998776554333
No 11
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=4.2e-27 Score=211.36 Aligned_cols=281 Identities=18% Similarity=0.276 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHH----Hhccc--CCCCCChhHHHH----HHHHHH
Q 018776 25 FLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIY----LQGFT--TKQMMNPWKTYV----KLSAVL 94 (350)
Q Consensus 25 l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~----~~~~~--~~~~~~~~~~~~----~ls~~~ 94 (350)
.+.++.++|++.+.-..+|++.- ..|++|++++..|.++-.++.. +...+ +.+.+..|+.|+ +.++..
T Consensus 17 ~L~lVl~yY~~Si~Ltf~~~~~~--~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat 94 (349)
T KOG1443|consen 17 TLALVLLYYFLSIGLTFYFKWLT--KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT 94 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh
Confidence 44466778887777777777774 3488999999999877433221 22222 223355677776 778888
Q ss_pred HhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHH
Q 018776 95 MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIM 174 (350)
Q Consensus 95 ~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~ 174 (350)
++...++|+|++|++.+.|++.||++++|+.+++.+++ -||++|.-.+.++++.+|++++++.+. +++..|+.+
T Consensus 95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflft~KsT----qf~i~Gf~l 168 (349)
T KOG1443|consen 95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLFTYKST----QFNIEGFFL 168 (349)
T ss_pred hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEEEeccc----ceeehhHHH
Confidence 89999999999999999999999999999999999994 699999999999999999999999864 688999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCC--CCChHhHHHHHHHhHHHHHHHH-hhccchHHHHHH--HH-HhchHHH---HHHHH
Q 018776 175 ISGALIMDSFLGNLQEAIFTMNP--ETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWN--SC-SQHLYVY---GVLVF 245 (350)
Q Consensus 175 ~l~s~~~~a~~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~--~~-~~~~~~~---~~l~l 245 (350)
+++|.++.|+++.+.+.++++++ +.+|..++++..++....++|. +..+|.....+. +. ..+...+ ..+.+
T Consensus 169 v~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l 248 (349)
T KOG1443|consen 169 VLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL 248 (349)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH
Confidence 99999999999999999998764 3578888888877766656554 455664322111 11 1121222 33444
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 246 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 246 ~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
.+..+++--.+.|....+++..+.++++..|.+.+++++.++.+|+++..+|.|..+++.|+..|...
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 44444444466788999999999999999999999999999999999999999999999999999554
No 12
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=4.1e-24 Score=204.48 Aligned_cols=300 Identities=10% Similarity=0.030 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHH----HhcccCCCCCChhHH---HHHHHHHHHhhHHHHHhh
Q 018776 32 FFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIY----LQGFTTKQMMNPWKT---YVKLSAVLMGSHGLTKGS 104 (350)
Q Consensus 32 i~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~----~~~~~~~~~~~~~~~---~~~ls~~~~~~~~l~~~a 104 (350)
+-.+|..+..+.+..++ .+.+ |..+.+..+....++.. .+..+++.++.+|+. +...+++......+.+.+
T Consensus 21 ~q~~~~~~~~~~k~a~~-~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~g 98 (358)
T PLN00411 21 TETSVVGISTLFKVATS-KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIG 98 (358)
T ss_pred HHHHHHHHHHHHHHHHH-CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666676663 3433 44466777666543322 122111122233443 444555544455688999
Q ss_pred hhcCchhHHHHHhhcchHHHHHHHHhhccC------ccccChhhHHHHHHHHHHHHHHhccCCC----------------
Q 018776 105 LAFLNYPAQLMFKSTKVLPVMVMGAFIPGL------RRKYPAHEYVSALLLVVGLILFTLADAQ---------------- 162 (350)
Q Consensus 105 l~~~s~~~~~v~ks~~pi~v~il~~l~~~l------~~r~~~~~~~~v~l~~~Gv~l~~~~~~~---------------- 162 (350)
++|++.+.+.++.++.|++++++++++ + |||.++++++++++.++|+.+....+..
T Consensus 99 l~~tsa~~asll~~~~P~~~~lla~~~--~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~ 176 (358)
T PLN00411 99 IEYSNPTLASAISNITPALTFILAIIF--RMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQL 176 (358)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHH--HhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccc
Confidence 999999999999999999999999988 4 8999999999999999999987653211
Q ss_pred -----CCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHh-HHHHHHHHhhccchHHHHHHHHHhc
Q 018776 163 -----TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVV-GLPMLIPPMLLTGELFKAWNSCSQH 236 (350)
Q Consensus 163 -----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~~~ 236 (350)
....+...|.+++++|++++|++++.+++..++++ +.....++...+ +.+..++....+++-...+. ...+
T Consensus 177 ~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 253 (358)
T PLN00411 177 SPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI-IHFD 253 (358)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHHHHccCCcccce-eccc
Confidence 00112366999999999999999999999887763 233444444433 33333333333321011110 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 237 LYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 237 ~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
...+..++.+ +.+.+++.+|++++++.||.++++..++.|++++++|++++||++++.+++|.++++.|+++..+.+++
T Consensus 254 ~~~~~i~y~~-i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 254 ITLITIVTMA-IITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2233333433 445678899999999999999999999999999999999999999999999999999999999876655
Q ss_pred Cccccccccchhhhhhhccccch
Q 018776 317 KPIKRTATSSFKVNIRKLSFSER 339 (350)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~ 339 (350)
+.+.+....+++|+.|..+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (358)
T PLN00411 333 EEKDQLLSFSGKEKTPLLLNGKN 355 (358)
T ss_pred hhhhcccCccccccchhhhhccc
Confidence 54333333345666666665555
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.91 E-value=4.8e-21 Score=179.94 Aligned_cols=272 Identities=12% Similarity=0.166 Sum_probs=191.4
Q ss_pred HHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHH-HhhHHHHHhhhhc-CchhH
Q 018776 35 GYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLSAVL-MGSHGLTKGSLAF-LNYPA 112 (350)
Q Consensus 35 ~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~-~~~~~l~~~al~~-~s~~~ 112 (350)
.+.......|... .+++ |..+++..+.+..+...+...+ ++.+++.....++.. .....+.+.+++| ++.+.
T Consensus 15 ~Wg~~~~~~k~~~--~~~~-p~~~~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~ 88 (299)
T PRK11453 15 VWGLNFVVIKVGL--HNMP-PLMLAGLRFMLVAFPAIFFVAR---PKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGL 88 (299)
T ss_pred HHhhhHHHHHHHH--hcCC-HHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3334444455444 2343 8888999977643332221121 123444444445543 3455567889988 68888
Q ss_pred HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHH
Q 018776 113 QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAI 192 (350)
Q Consensus 113 ~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l 192 (350)
..++.++.|++++++++++ +|||+++++++++++.++|+.+...++.+ ..+.+..|+++++.++++++.++++++|.
T Consensus 89 a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~~~~~~~G~~l~l~aal~~a~~~v~~~~~ 165 (299)
T PRK11453 89 ASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDSLN-GQHVAMLGFMLTLAAAFSWACGNIFNKKI 165 (299)
T ss_pred HHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhccccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8988999999999999999 99999999999999999999988754322 12335679999999999999999999997
Q ss_pred HhhCCCCChHhHHHHHHHhHHHHHHHH-hhccchHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 018776 193 FTMNPETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLSLIALFGAATTA 270 (350)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~s 270 (350)
.++.+........++...++....... ...+++..........++. ++..++++.+++.+++.+++..+++.++.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s 245 (299)
T PRK11453 166 MSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVA 245 (299)
T ss_pred hcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 654332222333445544443322221 1223321110001111223 34456777889999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 271 MVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 271 v~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
++..++|+++.++|++++||++++.+++|.+++++|+++..+.++
T Consensus 246 ~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 246 PLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999887664
No 14
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.91 E-value=2e-23 Score=179.87 Aligned_cols=292 Identities=15% Similarity=0.192 Sum_probs=225.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHH-HHhcccC-CCCCChhHHHHHHHHHHHh
Q 018776 19 RPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI-YLQGFTT-KQMMNPWKTYVKLSAVLMG 96 (350)
Q Consensus 19 ~p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~-~~~~~~~-~~~~~~~~~~~~ls~~~~~ 96 (350)
.|....+..|.+.|. -...|+++.+..+|+....+.++|.+++++.+ .++..+- .-|....++|++++++...
T Consensus 6 s~~~~~lsYc~sSIl-----mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~ 80 (309)
T COG5070 6 SELTASLSYCFSSIL-----MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVV 80 (309)
T ss_pred ccchHHHHHHHHHHH-----HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHH
Confidence 344445555655544 34668999999999999999999999886543 3332111 1123456778999999989
Q ss_pred hHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCC---CCchHHHHH
Q 018776 97 SHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS---PNFSMIGVI 173 (350)
Q Consensus 97 ~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~---~~~~~~G~~ 173 (350)
..+.+..+++|+++|.|+++|..+.+.++..+.++ +|+|.+-.+..+.+++++.-.+..++|.+.. ...--.|++
T Consensus 81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~ 158 (309)
T COG5070 81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYL 158 (309)
T ss_pred HHHhcccceeeeeeeHHHHhccceeehhHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceE
Confidence 99999999999999999999999999999999999 9999999999999999999999999987432 112346999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHH-hchHHHHHHHHHHHHHHH
Q 018776 174 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAMATFI 252 (350)
Q Consensus 174 ~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~~~~~~~~l~l~~~~~~l 252 (350)
|+..+++.++.+....++..+-.. ...++.++|+|++++|+++...+..+|+.+. +... -.++....+..+++|++.
T Consensus 159 Wm~~NclssaafVL~mrkri~ltN-f~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl~svg 236 (309)
T COG5070 159 WMFTNCLSSAAFVLIMRKRIKLTN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGLCSVG 236 (309)
T ss_pred EEehhhHhHHHHHHHHHHhhcccc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHHHHhh
Confidence 999999999887766554433221 2347899999999999988765554443221 1111 122344456667777765
Q ss_pred HHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCcc
Q 018776 253 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 319 (350)
Q Consensus 253 ~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~ 319 (350)
-.++.-++++.+|+++.+++|.+++....+.|.++||+|.+...+..+.+-+....+|.+.|.++++
T Consensus 237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677789999999999999999999999999999999999999999999999999999998876543
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=2.8e-21 Score=181.16 Aligned_cols=257 Identities=14% Similarity=-0.012 Sum_probs=179.5
Q ss_pred HHhhhhhccCCCChhhHHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHH-HHHHhhHHHHHhhhhc----CchhHHHH
Q 018776 41 VCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLS-AVLMGSHGLTKGSLAF----LNYPAQLM 115 (350)
Q Consensus 41 ~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ls-~~~~~~~~l~~~al~~----~s~~~~~v 115 (350)
...|... ..+ .|..+.+..+....++..+...+++.++.+ +++...+ +.+.....+.+.+++| .+.....+
T Consensus 21 ~~~k~~~--~~~-~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~ 96 (295)
T PRK11689 21 GLIRGVS--ESL-GPVGGAAMIYSVSGLLLLLTVGFPRLRQFP-KRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGM 96 (295)
T ss_pred HHHHHHH--ccC-ChHHHHHHHHHHHHHHHHHHcccccccccc-HHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 4455443 234 388888888777554443322222222233 3344444 3455667777777765 46666778
Q ss_pred HhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCC-------CCchHHHHHHHHHHHHHHHhHHHH
Q 018776 116 FKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS-------PNFSMIGVIMISGALIMDSFLGNL 188 (350)
Q Consensus 116 ~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~-------~~~~~~G~~~~l~s~~~~a~~~v~ 188 (350)
+.++.|++++++++++ +|||+++++++++++.++|++++..++...+ ..++..|+++++.+++++|.++++
T Consensus 97 l~~~~Pi~~~ll~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~ 174 (295)
T PRK11689 97 VNYLWPSLTILFAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNV 174 (295)
T ss_pred HHHHhHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 8999999999999999999998876543110 113457999999999999999999
Q ss_pred HHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 018776 189 QEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAAT 268 (350)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t 268 (350)
.||..++. ++....+ ..+...+.+....+++.. ...++..|..++..++++.++++++++++++.+|.+
T Consensus 175 ~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~ 243 (295)
T PRK11689 175 TRKYARGK---NGITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTL 243 (295)
T ss_pred HhhccCCC---CchhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 99975443 2333221 112222222222222211 112233444444445678889999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 269 TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 269 ~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+++..+++|++++++|++++||++++.+++|.++++.|+.+.....
T Consensus 244 ~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 244 LATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999998886544
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.90 E-value=2.8e-21 Score=177.42 Aligned_cols=241 Identities=15% Similarity=0.115 Sum_probs=186.7
Q ss_pred ChhhHHHHHHHHHHHHHHHH-hcccCCCCCChhHHHHHHHHH-HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHh
Q 018776 53 SYGWYFTFIQGFVYLVLIYL-QGFTTKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF 130 (350)
Q Consensus 53 ~~p~~lt~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~-~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l 130 (350)
..+..+++.++++..+...+ ...+ +++.+++.+...+.+ ..++..+.+.|++|++.+...++.++.|+++++++.+
T Consensus 16 ~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l 93 (260)
T TIGR00950 16 VPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDL 93 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHH
Confidence 45777788887776544332 2122 234455666666655 5678889999999999999999999999999999999
Q ss_pred hccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHH
Q 018776 131 IPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTV 210 (350)
Q Consensus 131 ~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~ 210 (350)
+ +|||++++++.++++.++|+.+....+. .+.+..|+.+.+.++++++.+.++.|+..++.+ .++.....+...
T Consensus 94 ~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~ 167 (260)
T TIGR00950 94 M--GKERPRKLVLLAAVLGLAGAVLLLSDGN---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PELLQFTGWVLL 167 (260)
T ss_pred H--ccCCCcHHHHHHHHHHHHhHHhhccCCc---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chHHHHHHHHHH
Confidence 9 8999999999999999999998875442 234678999999999999999999998776532 223344445566
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcC
Q 018776 211 VGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFT 289 (350)
Q Consensus 211 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfg 289 (350)
++.+++++.....++... .++..+ ..++++.+++.+++.++++++++.++.+.+++..++|+++.+++++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~ 241 (260)
T TIGR00950 168 LGALLLLPFAWFLGPNPQ------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILG 241 (260)
T ss_pred HHHHHHHHHHHhcCCCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 677666665444332111 012223 3455667778889999999999999999999999999999999999999
Q ss_pred CCcchhhhhhHHHHHHHH
Q 018776 290 KPLTEQHGTGLLLIAMGI 307 (350)
Q Consensus 290 e~~t~~~~iG~~lvl~Gv 307 (350)
|++++.+++|.++++.|+
T Consensus 242 E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 242 ETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999986
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=1.5e-20 Score=175.99 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=184.7
Q ss_pred hhhHHHHHHHHHHHHHH--HHhcccC-CCCCChhHHHHHHHHHH-HhhHHHHHhhh-hcCchhHHHHHhhcchHHHHHHH
Q 018776 54 YGWYFTFIQGFVYLVLI--YLQGFTT-KQMMNPWKTYVKLSAVL-MGSHGLTKGSL-AFLNYPAQLMFKSTKVLPVMVMG 128 (350)
Q Consensus 54 ~p~~lt~~q~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ls~~~-~~~~~l~~~al-~~~s~~~~~v~ks~~pi~v~il~ 128 (350)
.|..+++.+++++.++. +....++ .++++.++.....+.+. .....+.+.+. ++++.+..+++.++.|+++++++
T Consensus 35 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla 114 (292)
T PRK11272 35 PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFS 114 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 47888899988754432 2222221 12233455555666654 45677888898 99999999999999999999999
Q ss_pred HhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHH
Q 018776 129 AFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCS 208 (350)
Q Consensus 129 ~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~ 208 (350)
+ + +|||+++++++++++.++|+.+...++. .+.+..|+++.+++++++|.++++.||..++ ++.....+.
T Consensus 115 ~-~--~~e~~~~~~~~~~~la~~Gv~ll~~~~~---~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~----~~~~~~~~~ 184 (292)
T PRK11272 115 R-L--FGIRTRKLEWLGIAIGLAGIVLLNSGGN---LSGNPWGAILILIASASWAFGSVWSSRLPLP----VGMMAGAAE 184 (292)
T ss_pred H-H--hcccCchhHHHHHHHHHHhHHHHhcCcc---cccchHHHHHHHHHHHHHHHHHHHHHhcCCC----cchHHHHHH
Confidence 7 4 5899999999999999999998865422 1345679999999999999999998885432 123344566
Q ss_pred HHhHHHHHHHHhhccchHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHh
Q 018776 209 TVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI 287 (350)
Q Consensus 209 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~l 287 (350)
..++.+.+.+.....++... ...++. +...++++.+++.+++.++++++++.++.+.++...++|+++.++|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~ 260 (292)
T PRK11272 185 MLAAGVVLLIASLLSGERLT----ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGL 260 (292)
T ss_pred HHHHHHHHHHHHHHcCCccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655554333322110 011222 3345566777888999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 288 FTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 288 fge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+||++++.+++|.++++.|+++.++.++
T Consensus 261 l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 261 GGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876543
No 18
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.8e-25 Score=196.62 Aligned_cols=293 Identities=14% Similarity=0.144 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHhhhhhcc--CCCChhhHHHHHHHHHHHHHHHH-h-------cc-cCCC---CCChhHHHHHHHHHHH
Q 018776 30 SGFFFGYLVNGVCEEYVYNR--LQFSYGWYFTFIQGFVYLVLIYL-Q-------GF-TTKQ---MMNPWKTYVKLSAVLM 95 (350)
Q Consensus 30 ~gi~~~~~~~~~~~e~i~~~--~~f~~p~~lt~~q~~~~~~~~~~-~-------~~-~~~~---~~~~~~~~~~ls~~~~ 95 (350)
+-...+.+...+.|+++++. -.-+.|.+.++.|+++...++.. . +. ..+. +-...++..++++.+.
T Consensus 34 s~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi 113 (347)
T KOG1442|consen 34 SLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFI 113 (347)
T ss_pred cceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheee
Confidence 33344445666788888876 34678999999999997554322 1 11 1111 1133466788999999
Q ss_pred hhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHH
Q 018776 96 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMI 175 (350)
Q Consensus 96 ~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~ 175 (350)
+++.++|++|+|+++++|.+-|+.+.+|+.++++++ +|+|-+..-..++++++.|--+-.-.|+. .+..++.|.++.
T Consensus 114 ~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~-~~~ls~~GvifG 190 (347)
T KOG1442|consen 114 LMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGS-TGTLSWIGVIFG 190 (347)
T ss_pred eehhccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheeccccccc-cCccchhhhHHH
Confidence 999999999999999999999999999999999999 99999999999999998887665543322 235689999999
Q ss_pred HHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Q 018776 176 SGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ-HLYVYGVLVFEAMATFIGQ 254 (350)
Q Consensus 176 l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~-~~~~~~~l~l~~~~~~l~~ 254 (350)
+.|.++-|+..++.||.....++ ..+.+.+|+|+.++.+++|.+++.||+.+.+.+.+. ...+|..+.+++++++.-+
T Consensus 191 VlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mg 269 (347)
T KOG1442|consen 191 VLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMG 269 (347)
T ss_pred HHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876654332 357889999999999999998899998776654332 2235667778888877767
Q ss_pred HHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccccccccc
Q 018776 255 VSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSS 326 (350)
Q Consensus 255 ~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~~ 326 (350)
+...+-||.+||+|+++-++.|.+...++++.+++|.-+..-|-|-.+++.|...|++.|.++.+|+...+|
T Consensus 270 yvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s 341 (347)
T KOG1442|consen 270 YVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRS 341 (347)
T ss_pred heeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCC
Confidence 777788999999999999999999999999999999999999999999999999999999877766654443
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=9.6e-20 Score=170.66 Aligned_cols=279 Identities=12% Similarity=0.053 Sum_probs=194.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHH--hcccCCCCCChhHHHHHHHHH
Q 018776 16 LTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL--QGFTTKQMMNPWKTYVKLSAV 93 (350)
Q Consensus 16 ~~~~p~~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~ls~~ 93 (350)
..+.|++.-..+++.+.... ...+...|.... .++ |..+.+.+++...++..+ +..+++.+++.++.....+++
T Consensus 5 ~~~~~~~~~~~~~~la~~~~-~~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (293)
T PRK10532 5 LRKLPVWLPILLLLIAMASI-QSGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS 80 (293)
T ss_pred ccccccchHHHHHHHHHHHH-HhhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH
Confidence 34567766655555554433 344555666653 243 667888898876544332 211111223445556667777
Q ss_pred HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHH
Q 018776 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVI 173 (350)
Q Consensus 94 ~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~ 173 (350)
......+.++|++|+|.+..+++..+.|+++++++ +||.++ ...+.+.++|+.++...+.+ ..+.+..|++
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~--~~~~~i~~~Gv~li~~~~~~-~~~~~~~G~l 151 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVD--FVWVVLAVLGLWFLLPLGQD-VSHVDLTGAA 151 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHH--HHHHHHHHHHHheeeecCCC-cccCChHHHH
Confidence 77778888999999999999999999999988664 345444 44566778998876543221 1234578999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHH-HHHHHHHHHHHH
Q 018776 174 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFI 252 (350)
Q Consensus 174 ~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l 252 (350)
+.++++++++.+.++.||..+++ ++... .+...++...+++.....+... ..++..+ ..++++.+++.+
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAGEA------LWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccCcc------cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543 23333 3444555555555433322100 0122223 235677888889
Q ss_pred HHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 018776 253 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 317 (350)
Q Consensus 253 ~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~ 317 (350)
++.++++++++.+|.++++..+++|++++++|++++||++++.+++|.+++++|++.+.+..+++
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998765443
No 20
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.86 E-value=2.6e-19 Score=168.01 Aligned_cols=257 Identities=10% Similarity=0.085 Sum_probs=175.4
Q ss_pred HHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHH--HH--hcccCC-C-CCChhHHH--HHHH-HHHHhhHHHHHhhhhc
Q 018776 37 LVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--YL--QGFTTK-Q-MMNPWKTY--VKLS-AVLMGSHGLTKGSLAF 107 (350)
Q Consensus 37 ~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~--~~--~~~~~~-~-~~~~~~~~--~~ls-~~~~~~~~l~~~al~~ 107 (350)
...+..-+.. .+.+ |..+++.|++++..+. .. ++..+. + ...+++.+ ...+ +....++.+.++|+++
T Consensus 21 g~~~~~~k~~---~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (296)
T PRK15430 21 GIAPAYFKLI---YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNN 96 (296)
T ss_pred HHHHHHHHHh---cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444543 2344 7888899988764322 11 211000 0 01122322 2243 4456788999999999
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHH
Q 018776 108 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGN 187 (350)
Q Consensus 108 ~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v 187 (350)
+|.+...++.++.|++++++++++ +|||+++++++++++.++|+.++...+. +.. .+.+++++++|++.+
T Consensus 97 ~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~----~~~l~aa~~~a~~~i 166 (296)
T PRK15430 97 HHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP----IIALGLAFSFAFYGL 166 (296)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc----HHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999998864332 111 356778899999999
Q ss_pred HHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 018776 188 LQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLSLIALFGA 266 (350)
Q Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa 266 (350)
++||..++. ..+......+..+++.+..++. ..... . .....+. .+..+++.++++.+++.++++++++.+|
T Consensus 167 ~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~---~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a 239 (296)
T PRK15430 167 VRKKIAVEA-QTGMLIETMWLLPVAAIYLFAI--ADSST-S---HMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRL 239 (296)
T ss_pred HHHhcCCCC-chhHHHHHHHHHHHHHHHHHHH--ccCCc-c---cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 988753321 1112223334444443332211 11110 0 0011222 2333444455677999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 267 ATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 267 ~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.++++..+++|++++++|++++||++++.+++|+++++.|+.+.....
T Consensus 240 ~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 240 STLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888876543
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.82 E-value=4e-18 Score=158.74 Aligned_cols=216 Identities=12% Similarity=0.063 Sum_probs=159.2
Q ss_pred hHHHHHHHH-HHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCC
Q 018776 84 WKTYVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 162 (350)
Q Consensus 84 ~~~~~~ls~-~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~ 162 (350)
++.+...+. .......+.+.|+++.|.+....+.++.|++++++++++ +|||+++++++++++++.|+.+....+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~ 139 (281)
T TIGR03340 62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA 139 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 344444443 466788899999999999999999999999999999999 89999999999999999999988765432
Q ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCC-CChHhHHHHHHHhH-HHHHHHHhhccchHHHHHHHHHhchHHH
Q 018776 163 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPE-TTQMEMLFCSTVVG-LPMLIPPMLLTGELFKAWNSCSQHLYVY 240 (350)
Q Consensus 163 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~l~~~~~~g~~~~~~~~~~~~~~~~ 240 (350)
..+..|+.+.+.++++++.+.+..|+..++.+. .+......+..... .|+..+. ...++.. .. ......+
T Consensus 140 ---~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~~~~~~ 211 (281)
T TIGR03340 140 ---QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-LKRHGRS--MF--PYARQIL 211 (281)
T ss_pred ---ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-HHHhccc--hh--hhHHHHH
Confidence 234578888999999999999987765332211 11111222222222 2322211 1111100 00 0111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 018776 241 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 309 (350)
Q Consensus 241 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~l 309 (350)
..++.+.+++.+++.++++++++.++.+.+...++.|++++++|++++||+++..+++|.++++.|+.+
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 456677788889999999999999999999999999999999999999999999999999999999875
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.81 E-value=1.8e-18 Score=157.18 Aligned_cols=214 Identities=17% Similarity=0.260 Sum_probs=168.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCC
Q 018776 83 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 162 (350)
Q Consensus 83 ~~~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~ 162 (350)
...++.+++++|+..+.+.+.++++++.+++++++++++++|+++++++ +|||.+++||.++++.++|+.++..++..
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3456788999999999999999999999999999999999999999999 99999999999999999999998776542
Q ss_pred C-----C--------CCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhcc-chHHH
Q 018776 163 T-----S--------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT-GELFK 228 (350)
Q Consensus 163 ~-----~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 228 (350)
. + ......|+++++.+++++|+.+++.||++|+.+ .+.+..+.....++.++.++..... ++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 2 0 123579999999999999999999999999864 4555556666666777666543322 21111
Q ss_pred HHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 018776 229 AWNSCSQ-HLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 303 (350)
Q Consensus 229 ~~~~~~~-~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lv 303 (350)
...+.+. ++..|. ..+..+++-+.....+|+.+...-+....+.-+++.++|+++||.++|....+|..+|
T Consensus 173 ~~g~f~G~~~~~~~----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWI----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 0111111 112222 2344556677788899999999999999999999999999999999999999998764
No 23
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.4e-17 Score=154.21 Aligned_cols=226 Identities=19% Similarity=0.211 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCC--
Q 018776 85 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ-- 162 (350)
Q Consensus 85 ~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~-- 162 (350)
.+..+++++|...+-+.+.++.+.+.+++++....+...|+++..++ ++||.+++||.++++.++|+.++..+..+
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 34667889999988899999999999999999999999999999999 99999999999999999999999843221
Q ss_pred -C----CCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhcc-chHHHHHHHHHhc
Q 018776 163 -T----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT-GELFKAWNSCSQH 236 (350)
Q Consensus 163 -~----~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 236 (350)
. ...+.+.|+..++.+++++++.++|.||++|+.. .+.+-.+.....+|.++.+...+.. ++......+.+.+
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~ 249 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGY 249 (345)
T ss_pred CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccc
Confidence 1 1245789999999999999999999999998743 4444444455556666665554332 2211111223333
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 237 LY-VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 237 ~~-~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
.. .|..++ ..+++-+.....+|+.+...-.....+..+++.+.|+.+||.++|....+|+.+|+..+.+|+..++
T Consensus 250 s~~vw~vVl----~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 250 SSIVWLVVL----LNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred cHHHHHHHH----HHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 33 333333 3445666777889999999999999999999999999999999999999999999999999996666
Q ss_pred CC
Q 018776 316 DK 317 (350)
Q Consensus 316 ~~ 317 (350)
+.
T Consensus 326 ~~ 327 (345)
T KOG2234|consen 326 RD 327 (345)
T ss_pred cc
Confidence 54
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.77 E-value=1.2e-15 Score=141.41 Aligned_cols=214 Identities=15% Similarity=0.163 Sum_probs=162.6
Q ss_pred HHHHHHHH-HHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHH-hhccCccccChhhHHHHHHHHHHHHHHhccCCC
Q 018776 85 KTYVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGA-FIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 162 (350)
Q Consensus 85 ~~~~~ls~-~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~-l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~ 162 (350)
+.....+. .......+.+.++++++.+..+++.++.|+++.++++ ++ +|||++++++.++++.++|+.++...+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 33444444 4567788899999999999999999999999999997 66 69999999999999999999999987653
Q ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHH-HHHHhHHHHH-HHHhhccchHHHHHHHHHhchH-H
Q 018776 163 TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPML-IPPMLLTGELFKAWNSCSQHLY-V 239 (350)
Q Consensus 163 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~~-~ 239 (350)
.... ...|..+.+.+.++++++.+.++++. +. ++..... +... ..... .+......+ ...... .
T Consensus 148 ~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~ 214 (292)
T COG0697 148 GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL---GPVTLALLLQLL-LALLLLLLFFLSGFG-------APILSRAW 214 (292)
T ss_pred chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHHHHHHHHH-HHHHHHHHHHhcccc-------ccCCHHHH
Confidence 2111 47899999999999999999999876 32 2333333 2222 11111 111111100 011112 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 240 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 240 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
...+..+.+++.+++.+++..+++.++...++...++|+.+++++++++||+++..+++|.++++.|+.+....
T Consensus 215 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 215 LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 23344555555579999999999999999999999999999999999999999999999999999999998876
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.72 E-value=2e-16 Score=133.69 Aligned_cols=142 Identities=17% Similarity=0.284 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhC----CCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHH--HHh-----chHH
Q 018776 171 GVIMISGALIMDSFLGNLQEAIFTMN----PETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNS--CSQ-----HLYV 239 (350)
Q Consensus 171 G~~~~l~s~~~~a~~~v~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~--~~~-----~~~~ 239 (350)
|+++++.|.++.|++++++|+++++. .+.++.++++|+++.++++++|..+..++....... ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999999874 456889999999999999998876554443211111 111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 240 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 240 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
+..+..+++.+++.++..+.+++++||++.++++++|++.++++|+++|||++|+.+++|+++.+.|+.+|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5566777888888999999999999999999999999999999999999999999999999999999999986
No 26
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.72 E-value=6.9e-16 Score=137.66 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=176.6
Q ss_pred HHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCC---
Q 018776 87 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT--- 163 (350)
Q Consensus 87 ~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~--- 163 (350)
+++.+++...+..+.|.++.+++.+.++++|.+..+||.+++..+ ++++++.+||++++.+.+|++++...|...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456899999999999999999999999999999999999999999 999999999999999999999998775421
Q ss_pred ---CCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHH----hh-ccc---------hH
Q 018776 164 ---SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP----ML-LTG---------EL 226 (350)
Q Consensus 164 ---~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~-~~g---------~~ 226 (350)
+.+....|+++++++-+.-|++.+++||.++++ +.+|.+...|..++++.++-.. .. ..| .+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~ 245 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL 245 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence 123568999999999999999999999998876 3678888888888775544221 11 111 11
Q ss_pred ---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 018776 227 ---FKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 303 (350)
Q Consensus 227 ---~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lv 303 (350)
.+.+......|.....+....++-++.|+.-....+..||+|..+.-.+|..+..++++....|.+...|+.|.++.
T Consensus 246 eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliL 325 (372)
T KOG3912|consen 246 EDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLIL 325 (372)
T ss_pred hhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 12222233344332222222222223456667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 018776 304 AMGITLKLLP 313 (350)
Q Consensus 304 l~Gv~ly~~~ 313 (350)
+.|+.+|+-.
T Consensus 326 i~Gi~lY~~i 335 (372)
T KOG3912|consen 326 IMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999643
No 27
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.70 E-value=7.5e-17 Score=145.05 Aligned_cols=192 Identities=17% Similarity=0.254 Sum_probs=143.1
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCC-----------------------C
Q 018776 108 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----------------------S 164 (350)
Q Consensus 108 ~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~-----------------------~ 164 (350)
+++|.++.+|+++++++++.++.+ .+||++..++++.++++.|+......|.+. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 578999999999999999999999 899999999999999999998654433210 1
Q ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhcc------chHHHHHHHHHhchH
Q 018776 165 PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT------GELFKAWNSCSQHLY 238 (350)
Q Consensus 165 ~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~~~~~~~~~~~~ 238 (350)
..+...|..+.+.++.++++.++++|+..++++ .++|.+.+++++..+..... ++....+.+...+|.
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD------TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC------CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 135688888899999999999999999866532 22455444444433221111 111111111222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 018776 239 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 310 (350)
Q Consensus 239 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly 310 (350)
....+ .+..+.++.+...++++.|+.+.+++.++|++++.++|+++|||+++..+++|..+++.|+++|
T Consensus 154 ~~~~~---~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIV---GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHH---HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22222 2345577788999999999999999999999999999999999999999999999999998876
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.6e-18 Score=152.52 Aligned_cols=282 Identities=15% Similarity=0.196 Sum_probs=198.7
Q ss_pred cCCCChhhHHHHHHHHHHHHHHH--HhcccCCCCCChhHHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHH
Q 018776 49 RLQFSYGWYFTFIQGFVYLVLIY--LQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMV 126 (350)
Q Consensus 49 ~~~f~~p~~lt~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~i 126 (350)
+.+.+.|..=||..... +.+.+ ...+|++..+..|++|+.+++...-++.+-..|.||++....+++.+...+.+++
T Consensus 42 ~k~iN~Pt~QtFl~Y~L-LalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~ 120 (336)
T KOG2766|consen 42 RKGINAPTSQTFLNYVL-LALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLV 120 (336)
T ss_pred hccCCCccHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHH
Confidence 34467776555544322 11122 1345555556789999999999888888889999999999999999999999999
Q ss_pred HHHhhccCccccChhhHHHHHHHHHHHHHHhccCCC----CCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChH
Q 018776 127 MGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ----TSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQM 202 (350)
Q Consensus 127 l~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~ 202 (350)
++|++ +|.||++.++.++++++.|++++...|-. ..+++...|+.++++.+.++|+.++.+|.+.++ .+..
T Consensus 121 lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn---~d~~ 195 (336)
T KOG2766|consen 121 LSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN---ADRV 195 (336)
T ss_pred HHHHH--HHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhc---CcHH
Confidence 99999 99999999999999999999998877652 224567899999999999999999999988776 3567
Q ss_pred hHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHH
Q 018776 203 EMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLL 282 (350)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ 282 (350)
|++....++++++..+-.+.+..-... .+.+.....++. ..++-++-+.+.-..+|..||+..++--......+++
T Consensus 196 elm~~lgLfGaIIsaIQ~i~~~~~~~t---l~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~ 271 (336)
T KOG2766|consen 196 ELMGFLGLFGAIISAIQFIFERHHVST---LHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLL 271 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccceee---EeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHH
Confidence 888777777776654432211110000 001111111222 2333334444455678999999998888888888888
Q ss_pred HHHHhcCCCcchhhhhhHHHHHHHHHHHhccC-CCCccccccccchhhhhhhccccchhhh
Q 018776 283 LSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA-DDKPIKRTATSSFKVNIRKLSFSEREEA 342 (350)
Q Consensus 283 ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (350)
+ ..||-++++...+..+.+..|.++|.... .++..|+....+...+.||..+.|||.|
T Consensus 272 i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~r~~~v~~~~~~~~~L~~eed~~~ 330 (336)
T KOG2766|consen 272 I--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEELRKGQVVSEVRRPRKLLDEEDEQS 330 (336)
T ss_pred H--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHhhccCccccccccCccccCcccccc
Confidence 7 78898899999999999999999994322 2222233333455555677776655543
No 29
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.66 E-value=6.5e-14 Score=128.58 Aligned_cols=229 Identities=8% Similarity=0.009 Sum_probs=151.0
Q ss_pred HHHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHH--HH--hcccC----C-C--CCCh-hHHHHHHHHHHHhhHHHHHh
Q 018776 36 YLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--YL--QGFTT----K-Q--MMNP-WKTYVKLSAVLMGSHGLTKG 103 (350)
Q Consensus 36 ~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~--~~--~~~~~----~-~--~~~~-~~~~~~ls~~~~~~~~l~~~ 103 (350)
+...+...+.+ . +. .|..+++.+++.+.++. +. ++.++ + + ++.+ +......+++...+..+.++
T Consensus 14 wg~~~~~~k~~-~--~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (256)
T TIGR00688 14 FGYMYYYSKLL-K--PL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIW 89 (256)
T ss_pred HHHHHHHHHHh-c--cC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543 2 23 47888999988765332 22 22110 0 0 0111 11233445667788899999
Q ss_pred hhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHH
Q 018776 104 SLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDS 183 (350)
Q Consensus 104 al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a 183 (350)
|+++++.+.++++.++.|++++++++++ +|||+++++++++++.++|+++...++. +.. .+++.++++++
T Consensus 90 a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~~~----~~~l~aa~~~a 159 (256)
T TIGR00688 90 AVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----SLP----WEALVLAFSFT 159 (256)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----Cch----HHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999998765321 112 34677899999
Q ss_pred hHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018776 184 FLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL-YVYGVLVFEAMATFIGQVSVLSLIA 262 (350)
Q Consensus 184 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-~~~~~l~l~~~~~~l~~~~~~~~i~ 262 (350)
.+.+..||..++ +..+...+ .....|...+.....+. .. .. ..++ ..|..+++.++.+.+++.+++.+++
T Consensus 160 ~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~ 230 (256)
T TIGR00688 160 AYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-AT-VQ--QTNPFPIWLLLVLAGLITGTPLLAFVIAAN 230 (256)
T ss_pred HHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-Cc-cc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875432 12222222 22233333221111111 00 00 0111 1344444444568899999999999
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHh
Q 018776 263 LFGAATTAMVTTARKAVTLLLSYLI 287 (350)
Q Consensus 263 ~~sa~t~sv~~~l~~v~~i~ls~~l 287 (350)
+.+|.+.++..+++|+++.+++.+.
T Consensus 231 ~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 231 RLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 30
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=1.1e-15 Score=141.57 Aligned_cols=219 Identities=11% Similarity=0.168 Sum_probs=176.1
Q ss_pred HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCC----CCCchH
Q 018776 94 LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT----SPNFSM 169 (350)
Q Consensus 94 ~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~----~~~~~~ 169 (350)
...++.+.|.||.|++++..+++.+++-.||.+++.++ .+||+++.+.+++++.+.|++++..+|.++ .+....
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~l 246 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPL 246 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchh
Confidence 45788899999999999999999999999999999999 689999999999999999999999987632 234569
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCC-CCChHhHHHHHHHhHHHHHHHHhhccchH-HHHHHHHHhchHHHHHHHHHH
Q 018776 170 IGVIMISGALIMDSFLGNLQEAIFTMNP-ETTQMEMLFCSTVVGLPMLIPPMLLTGEL-FKAWNSCSQHLYVYGVLVFEA 247 (350)
Q Consensus 170 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~~~~~~~~~l~l~~ 247 (350)
.|.++++++++.+|.|.++.||-..+++ +.+.-.+..|..++.+.++.|.+++-.-. .+.++ .........+++.++
T Consensus 247 lG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~-lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 247 LGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE-LPSSTQFSLVVFNNL 325 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc-CCCCceeEeeeHhhH
Confidence 9999999999999999999988666653 44433344477777777777654321110 00000 011122333456678
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+.++++-++|..+.-.++|++.++-.++..-.+++.-+++=|+++|+.+++|.+.+++|.+..++...
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 88889999999999999999999999999999999999999999999999999999999999888754
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.61 E-value=5.8e-13 Score=124.61 Aligned_cols=206 Identities=13% Similarity=0.154 Sum_probs=154.7
Q ss_pred HHHHhhHHHHHhhhhcCchhHHHHHhh-cchHHHHHHHHhhccCccccChhh----HHHHHHHHHHHHHHhccCCCCCC-
Q 018776 92 AVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHE----YVSALLLVVGLILFTLADAQTSP- 165 (350)
Q Consensus 92 ~~~~~~~~l~~~al~~~s~~~~~v~ks-~~pi~v~il~~l~~~l~~r~~~~~----~~~v~l~~~Gv~l~~~~~~~~~~- 165 (350)
+.....+.+.+.|.+++++++...+-+ ..++.+.+.+.++ +|||.++++ +++++++++|+++....+.+...
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~ 144 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI 144 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence 346677899999999999999977777 7788889999999 899999999 99999999999998765433211
Q ss_pred ---CchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHH---Hh-HHHHHHHHhhccchHHHHHHHHHhchH
Q 018776 166 ---NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCST---VV-GLPMLIPPMLLTGELFKAWNSCSQHLY 238 (350)
Q Consensus 166 ---~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~~~~g~~~~~~~~~~~~~~ 238 (350)
.+...|+++.++|.++++.+.+..|+. + .++.+..+.+. .+ +..+..+. ....+ + ....
T Consensus 145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----~----~~~~ 210 (290)
T TIGR00776 145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF--G---VDGLSVLLPQAIGMVIGGIIFNLGH-ILAKP----L----KKYA 210 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHc--C---CCcceehhHHHHHHHHHHHHHHHHH-hcccc----h----HHHH
Confidence 223689999999999999999988864 2 24555433222 22 22222211 00010 0 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHHHhcc
Q 018776 239 VYGVLVFEAMATFIGQVSVLSLIA-LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLP 313 (350)
Q Consensus 239 ~~~~l~l~~~~~~l~~~~~~~~i~-~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~----iG~~lvl~Gv~ly~~~ 313 (350)
.+..++ .++...+++.+++...+ +.++.+.++..+++|+.++++|++++||+.++.++ +|.++++.|+.+-...
T Consensus 211 ~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 211 ILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 233333 44446788999989999 99999999999999999999999999999999999 9999999999987655
Q ss_pred C
Q 018776 314 A 314 (350)
Q Consensus 314 k 314 (350)
|
T Consensus 290 ~ 290 (290)
T TIGR00776 290 K 290 (290)
T ss_pred C
Confidence 3
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.52 E-value=8.7e-12 Score=112.91 Aligned_cols=213 Identities=13% Similarity=0.141 Sum_probs=155.1
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchH
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSM 169 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~ 169 (350)
-++....+....-+|.+.=..--+.+-....|++.++++.++ +|||+++.|++++++..+||..-.+..+ +.++
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpw 151 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPW 151 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcH
Confidence 344455566666777777555555667777899999999999 9999999999999999999998877653 4456
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHH-hchHHHHHHHHHHH
Q 018776 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAM 248 (350)
Q Consensus 170 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~-~~~~~~~~l~l~~~ 248 (350)
..+.++ +.+++|....|++ + .++.+-+..-.++-+|..+..++..++-.+ +.. +++..+..+.+++.
T Consensus 152 val~la----~sf~~Ygl~RK~~-~----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 152 VALALA----LSFGLYGLLRKKL-K----VDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGL 219 (293)
T ss_pred HHHHHH----HHHHHHHHHHHhc-C----CchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhH
Confidence 555443 4667788765543 1 234444433444444444333222111111 122 34445666667777
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccc
Q 018776 249 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 320 (350)
Q Consensus 249 ~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~ 320 (350)
.|.+.-.++...-++.+=.+.++..+++|....+++++++||+++..+++..+++-.|+.+|+...-+++||
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888888899999999999999999999999999999999999999999999999999999887655444
No 33
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.42 E-value=2.2e-10 Score=101.50 Aligned_cols=246 Identities=12% Similarity=0.053 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHHHHH--HHhcccCCCCCChhHHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhc
Q 018776 55 GWYFTFIQGFVYLVLI--YLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIP 132 (350)
Q Consensus 55 p~~lt~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~ 132 (350)
+.-.|........++. ..+-++++..+..|+.....+.+..+.|.+.|.|++.+|.++++.+..+.|+.+.+++
T Consensus 40 ~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~---- 115 (292)
T COG5006 40 AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS---- 115 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----
Confidence 4555666644433322 2232222223445666667788888999999999999999999999999999877653
Q ss_pred cCccccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhH
Q 018776 133 GLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVG 212 (350)
Q Consensus 133 ~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 212 (350)
-|| .++.+.+.+.+.|..+..-.+.+ ..+.+..|..+.+.+..|++.|-+..+|.-+..+ .-+-+.....++
T Consensus 116 --sRr--~~d~vwvaLAvlGi~lL~p~~~~-~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~---g~~g~a~gm~vA 187 (292)
T COG5006 116 --SRR--LRDFVWVALAVLGIWLLLPLGQS-VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH---GTAGVAVGMLVA 187 (292)
T ss_pred --ccc--hhhHHHHHHHHHHHHhheeccCC-cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC---CchHHHHHHHHH
Confidence 343 34555566777887776544322 1245799999999999999999999998875322 223333444555
Q ss_pred HHHHHHHhhccchHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCC
Q 018776 213 LPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKP 291 (350)
Q Consensus 213 ~~~~l~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~ 291 (350)
..+.+|+-....+ . . ..+|... .-+..+.+++++.|.+-...+++.++.+.++..+++|.++.+.|++++||+
T Consensus 188 aviv~Pig~~~ag-~---~--l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ 261 (292)
T COG5006 188 ALIVLPIGAAQAG-P---A--LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET 261 (292)
T ss_pred HHHHhhhhhhhcc-h---h--hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 5555554221111 0 0 1234432 234566677778888889999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHhccCCCCc
Q 018776 292 LTEQHGTGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 292 ~t~~~~iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
+|+.||+|++.++.+..-.++.-+|+.
T Consensus 262 ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 262 LTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred CCHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999999999887776655444
No 34
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.37 E-value=6.8e-14 Score=124.28 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=158.3
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc-----CCCC-
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA-----DAQT- 163 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~-----~~~~- 163 (350)
.++....+..+.++|++|++.+-++++..++|++|.+++|.+ +||+++..+.++..+.+.||+++.-. |...
T Consensus 103 Rg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g 180 (346)
T KOG4510|consen 103 RGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEG 180 (346)
T ss_pred ehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccc
Confidence 366666677889999999999999999999999999999999 99999999999999999999987532 2111
Q ss_pred --C--CCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhch-H
Q 018776 164 --S--PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL-Y 238 (350)
Q Consensus 164 --~--~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-~ 238 (350)
+ .+.+..|....+.+++..|-..+..+++.|+. +..-.+.|...++++..++.+..-|++ . ..|. .
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig~~----~--lP~cgk 251 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIGAV----Q--LPHCGK 251 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhccce----e--cCcccc
Confidence 1 12356777777777777666666666665542 222234455566666655543322321 1 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 239 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 239 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
-+..+...++.++++|++....++.=-|-..++..+..-+++.+.-+++|||..|++.|+|+++++....+....|
T Consensus 252 dr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 252 DRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred ceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 1222333356678999999999998888889999999999999999999999999999999999998888776544
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.97 E-value=3.5e-09 Score=85.43 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=93.5
Q ss_pred HHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHH
Q 018776 181 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLS 259 (350)
Q Consensus 181 ~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~ 259 (350)
++|.+.++.|+..++ .++.+..++....+.+ .++.....+... ....++. ....+..+.+++.+++.+++.
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 567788888887776 4678888888888776 444333222111 0111222 233445555656789999999
Q ss_pred HHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 260 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 260 ~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
++++.++...++...+.|+++.++++++++|+++..+++|+++++.|+.+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.90 E-value=3.6e-09 Score=84.40 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHH
Q 018776 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 251 (350)
Q Consensus 172 ~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 251 (350)
.+++++|+++.++..++.|--.++ .+|.-..+--+++...++...++..|+....- .-++..|..+.++++.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHH
Confidence 457788999999999887754443 23433344444444444544455566532210 124456777888889998
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
++-+++|++++.-.+.....+.-..+++++++|++++||++|..+|+|++++.+|..+-+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999999987654
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.78 E-value=4.9e-07 Score=84.86 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHH
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 246 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~ 246 (350)
....|.++++++.++++...++.|.. . +.++.+..++...++.+++++.....++..+.... ..++..+......
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL-IQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-HcCHHHHHHHHHH
Confidence 45789999999999999999988643 2 25788999999999887776654433332211110 1122222223344
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 247 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 247 ~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
+++....+.++++.+++.++...++.....|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 55555677899999999999999999999999999999999999999999999999999998754
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.70 E-value=9.4e-07 Score=81.04 Aligned_cols=137 Identities=7% Similarity=0.057 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHh-ch-HHHHHHHHHH
Q 018776 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ-HL-YVYGVLVFEA 247 (350)
Q Consensus 170 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~-~~-~~~~~l~l~~ 247 (350)
.|..++++++++++...+..|. ..+ .++.++.++-.+++.+++++.....++.......... +. +.+..+.+.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 3888999999999999999886 332 5789999999998887766543333322111111111 11 1222344444
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 310 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly 310 (350)
+.....+.+++.+++++++.+.++.....|+++.+++.++++|+++..+++|+++.+.|+.+-
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 555567788999999999999999999999999999999999999999999999999998754
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.64 E-value=3.3e-07 Score=78.66 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=143.0
Q ss_pred HHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCch
Q 018776 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFS 168 (350)
Q Consensus 89 ~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~ 168 (350)
+.+++..+.++....|++.++.+.++-+-+|.-.||.+++++. +|+|+...+++++++.+.|++++++.|... .+.
T Consensus 58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~--a~e 133 (290)
T KOG4314|consen 58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH--ADE 133 (290)
T ss_pred ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--hhh
Confidence 4455666788888999999999999999999999999999999 999999999999999999999999887642 457
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhC--CCCCh-HhHHHHHHH--hHHHHHHHHhhccchHHHHHHHHHhchHHHHHH
Q 018776 169 MIGVIMISGALIMDSFLGNLQEAIFTMN--PETTQ-MEMLFCSTV--VGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVL 243 (350)
Q Consensus 169 ~~G~~~~l~s~~~~a~~~v~~~~l~~~~--~~~~~-~~~~~~~~~--~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l 243 (350)
+.|+.++..|+++.++|-+..|+..... ++... +..+.+.++ .+.|.++ +.++| .+.++.....| |.-+
T Consensus 134 ~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lI--L~~T~--VE~~qsFA~~P--WG~l 207 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALI--LAFTG--VEHLQSFAAAP--WGCL 207 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHH--HHHhc--hHHHHHHhhCC--chhh
Confidence 9999999999999999999998876532 11111 111112221 1111111 11222 12222111122 3322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 244 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 244 ~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
.-.+..+..-++.....+..+.|...|+-.....-.......++-+-.++.....|..++..|..+-...
T Consensus 208 ~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 208 CGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 2112222223345556666677777666555544444555555555677889999999999998876544
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.61 E-value=3e-07 Score=73.97 Aligned_cols=116 Identities=13% Similarity=0.207 Sum_probs=85.8
Q ss_pred HHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHH--H-Hhccc--CCCCCChhHHHHHHHHH-HHhhHHHHHhhhhcCch
Q 018776 37 LVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLI--Y-LQGFT--TKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLNY 110 (350)
Q Consensus 37 ~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~--~-~~~~~--~~~~~~~~~~~~~ls~~-~~~~~~l~~~al~~~s~ 110 (350)
..+.+++++..++ ++ |...++.++..+.+.. . ....+ +..+...+......+.+ ...+..+.+.++++++.
T Consensus 4 a~~~~~~k~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 80 (126)
T PF00892_consen 4 AIYSVFSKKLLKK--IS-PLSITFWRFLIAGILLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISA 80 (126)
T ss_pred eeHHHHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcch
Confidence 3556777777644 33 6777888877755311 1 12221 11222333444555665 46788899999999999
Q ss_pred hHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHh
Q 018776 111 PAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 157 (350)
Q Consensus 111 ~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~ 157 (350)
+..+++.++.|++++++++++ +||++++++++++++++.|+.++.
T Consensus 81 ~~~~~~~~~~pv~~~i~~~~~--~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 81 SIVSILQYLSPVFAAILGWLF--LGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999998864
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.60 E-value=2.2e-07 Score=74.46 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=67.8
Q ss_pred CChhHHHHHHHHHHH-hhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc
Q 018776 81 MNPWKTYVKLSAVLM-GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (350)
Q Consensus 81 ~~~~~~~~~ls~~~~-~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~ 159 (350)
++++......+++.. .++.+.++|+++.+ +....+.++.|++++++++++ +|||++++++.+++++++|++++.++
T Consensus 31 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 31 RKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWS 107 (113)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 345555555566654 78889999999999 577799999999999999999 99999999999999999999999998
Q ss_pred CCC
Q 018776 160 DAQ 162 (350)
Q Consensus 160 ~~~ 162 (350)
|.+
T Consensus 108 ~~~ 110 (113)
T PF13536_consen 108 DLT 110 (113)
T ss_pred hcc
Confidence 754
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.58 E-value=1.7e-05 Score=72.52 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=140.0
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHH-HHhhcchHHHHHHHHhhccCccccChhhH----HHHHHHHHHHHHHhccCCCCC
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQTS 164 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~-v~ks~~pi~v~il~~l~~~l~~r~~~~~~----~~v~l~~~Gv~l~~~~~~~~~ 164 (350)
-+++.......++.|++++.++... +--....+.+.+.+.++ |+|--+..++ ++++++++|+.+.+..|.++.
T Consensus 51 sG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 51 SGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4566778899999999997765443 22234566788899999 8998887775 478899999999999887543
Q ss_pred ----CCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHH-HhhccchHHHHHHHHHhchHH
Q 018776 165 ----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIP-PMLLTGELFKAWNSCSQHLYV 239 (350)
Q Consensus 165 ----~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~~~~~~~~~~~~~~~ 239 (350)
..+...|+..++++.+.+..|.+..+- . +.++++..+=++ ++..+... ..+...+. ..+...
T Consensus 129 ~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~----~~~~~~~~lPqa-iGm~i~a~i~~~~~~~~-------~~~k~~ 195 (269)
T PF06800_consen 129 KSSSKSNMKKGILALLISTIGYWIYSVIPKA-F----HVSGWSAFLPQA-IGMLIGAFIFNLFSKKP-------FFEKKS 195 (269)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHh-c----CCChhHhHHHHH-HHHHHHHHHHhhccccc-------ccccch
Confidence 224577999999999999888887543 1 235555544322 22222111 11111110 001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchh----hhhhHHHHHHHHHH
Q 018776 240 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITL 309 (350)
Q Consensus 240 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~----~~iG~~lvl~Gv~l 309 (350)
|.-+ +.++.-.+++.+++...++.|..+.=..+.+..+++.+.|++++||+=+.. .++|.++++.|..+
T Consensus 196 ~~ni-l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 196 WKNI-LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhh-HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 2222 234444589999999999999999999999999999999999999987754 56788888777654
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.56 E-value=7.1e-07 Score=83.73 Aligned_cols=215 Identities=14% Similarity=0.148 Sum_probs=122.0
Q ss_pred HHHHH-HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCCCc
Q 018776 89 KLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNF 167 (350)
Q Consensus 89 ~ls~~-~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~ 167 (350)
..|+. +..+..+++.|+.+.|.+..+=+-+...++.++++..+ +|||++++++.|+.++++|..++....++..+..
T Consensus 54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~ 131 (300)
T PF05653_consen 54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH 131 (300)
T ss_pred HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCCCCCCcC
Confidence 44543 56777899999999999999988999999999999999 9999999999999999999987665443322111
Q ss_pred ------------hHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHH---HHhHHHHHHHHhhccchHHHHHH-
Q 018776 168 ------------SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCS---TVVGLPMLIPPMLLTGELFKAWN- 231 (350)
Q Consensus 168 ------------~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~g~~~~~~~- 231 (350)
....+........ ..+.-...+++++.+ ++.|. ++++....+..=....-+.+...
T Consensus 132 t~~~l~~~~~~~~fl~y~~~~~~~~-----~~L~~~~~~r~g~~~---i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g 203 (300)
T PF05653_consen 132 TLDELIALLSQPGFLVYFILVLVLI-----LILIFFIKPRYGRRN---ILVYISICSLIGSFTVLSAKAISILIKLTFSG 203 (300)
T ss_pred CHHHHHHHhcCcceehhHHHHHHHH-----HHHHHhhcchhcccc---eEEEEEEeccccchhhhHHHHHHHHHHHHhcC
Confidence 1111211111111 111111111221111 11121 11111111000000000000000
Q ss_pred -HHHhchHHHHHHHHHHHHHHHHH-HHHHHHHHhhcHHHHHHHH-hHHHHHHHHHHHHhcCC--Ccch----hhhhhHHH
Q 018776 232 -SCSQHLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTAMVT-TARKAVTLLLSYLIFTK--PLTE----QHGTGLLL 302 (350)
Q Consensus 232 -~~~~~~~~~~~l~l~~~~~~l~~-~~~~~~i~~~sa~t~sv~~-~l~~v~~i~ls~~lfge--~~t~----~~~iG~~l 302 (350)
....+|..|..++.... +.+.| ...+.+++++++.....+. ..-...+++.|.++|+| +.++ ....|..+
T Consensus 204 ~~~f~~~~~y~l~~~~v~-~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ 282 (300)
T PF05653_consen 204 DNQFTYPLTYLLLLVLVV-TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLI 282 (300)
T ss_pred chhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 01134444544444333 44566 4567899999987644433 33456788888999996 5555 45667888
Q ss_pred HHHHHHHHhccC
Q 018776 303 IAMGITLKLLPA 314 (350)
Q Consensus 303 vl~Gv~ly~~~k 314 (350)
++.|+++-+..|
T Consensus 283 ii~GV~lL~~~~ 294 (300)
T PF05653_consen 283 IIIGVFLLSSSK 294 (300)
T ss_pred HHHhhheeeccC
Confidence 888888865444
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.55 E-value=4.3e-06 Score=68.51 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHH
Q 018776 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 249 (350)
Q Consensus 170 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~ 249 (350)
.|+++++.+.++.+...++.|+=+++.++.+. ... .. ... . ...+| +..++++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~---~~~-~~---~~~----~-----------~~~~p--~~~i~lgl~~ 57 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH---AWD-FI---AAL----L-----------AFGLA--LRAVLLGLAG 57 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc---hhH-HH---HHH----H-----------HHhcc--HHHHHHHHHH
Confidence 48889999999998888888876555332111 000 00 000 0 00122 1135566677
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHH--hcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 250 TFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYL--IFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 250 ~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~--lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
..+++++|..++++.+...+..+.++..+...+.++. +|||++|+.+++|++++++|+.+.+..+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 7789999999999999999999988888888888885 8999999999999999999999977543
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.44 E-value=3.7e-06 Score=78.23 Aligned_cols=133 Identities=12% Similarity=0.144 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHH
Q 018776 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 251 (350)
Q Consensus 172 ~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 251 (350)
+.+.+.++++++...+..||..+++ ++ ..++....+.+.++|........ ..+. ....+.+..+.+.++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQ-VGWS--RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhccc-CCCC--CcchhhHHHHHHHHHHHH
Confidence 4567889999999999988765542 23 23455555555555543321100 0000 011123444555566666
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
.++.+.+.+.++.++...+++....|+++.+++++++||+++..+++|+++++.|+.+-..
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999999999999999999999999999999999999987653
No 46
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.36 E-value=1.6e-05 Score=63.57 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCC
Q 018776 211 VGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTK 290 (350)
Q Consensus 211 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge 290 (350)
++.+..+......++..+......+++..+ .+..+.++...++..++...++.++ ..++...+.|+++.++|.++|+|
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~e 84 (113)
T PF13536_consen 7 FSVLFLLIILLIRGRLRDLFRALRRKPWLW-LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKE 84 (113)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444555544444333443333 2222333333677888899999995 77799999999999999999999
Q ss_pred CcchhhhhhHHHHHHHHHHHhccCC
Q 018776 291 PLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 291 ~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+++..+++|++++++|+.+-.+...
T Consensus 85 r~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 85 RLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999887654
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.18 E-value=5.8e-05 Score=69.01 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHH
Q 018776 168 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 247 (350)
Q Consensus 168 ~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 247 (350)
+..|+++.+.|-+.+++.-.|.|-+ +. .++.|+..+-.+++.|+++..+...++..+.++ ...+|..+..+.+.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH
Confidence 4579999999999999988887754 32 467899999999999988776655555555444 445666554444433
Q ss_pred HHHHHHHH-HHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 248 MATFIGQV-SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 248 ~~~~l~~~-~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.. ...|. .+.++..+-....+|.--.++|.+.+++|.++++|+++..|++..++..+|+..-.+..
T Consensus 80 ~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 80 LL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 32 13454 44578888899999999999999999999999999999999999999999998876653
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.11 E-value=9.6e-05 Score=71.20 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHH
Q 018776 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 251 (350)
Q Consensus 172 ~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 251 (350)
++.+++.-++++...++.|..++. ..++....+|-..++.+++++..+..+.. ..+. ..+...+..+.+.++++.
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~--G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~--~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSK--GLNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLP--PLSVSILSKIGLLGFLGS 89 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHHHHHHHHHHHHh-cccC--cchHHHHHHHHHHHHHHH
Confidence 344555667777778888877754 25677788888888877776654332110 0000 001112223333344444
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHh------cCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI------FTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~l------fge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+.+.+.+..+++++|...+++.+..|+++.++++++ ++|+++..+++|+++.++|+.+-...+
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 555678899999999999999999999999999999 699999999999999999998866543
No 49
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.09 E-value=5.4e-05 Score=69.24 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018776 185 LGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALF 264 (350)
Q Consensus 185 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~ 264 (350)
..+..|...++. .++.+..++-.+.+.+++.+..... . ...+....+..+.++..+.+.+++.++++.
T Consensus 4 ~~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~---~-------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 4 TGVVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR---P-------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc---c-------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555544432 4677788877777766655532221 0 011122334555556567778899999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 265 GAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 265 sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
++...+++..+.|+++.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988653
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.96 E-value=4.7e-05 Score=60.75 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=59.0
Q ss_pred HHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhc
Q 018776 92 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (350)
Q Consensus 92 ~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~ 158 (350)
.++..+..+...+++.+|.+.+-.+-+..++.+++.++++ +|||+++++++++.++++|+++.+.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3466788899999999999998888889999999999999 9999999999999999999998764
No 51
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.92 E-value=0.00028 Score=59.06 Aligned_cols=66 Identities=9% Similarity=0.137 Sum_probs=60.3
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHh
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 157 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~ 157 (350)
.+++....+...+..+++++.-+++++...+.+.+.++++++ ++|+++..++.|+++.++|+.+.+
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheee
Confidence 355566888899999999999999999999999999999999 899999999999999999998754
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.90 E-value=0.00035 Score=65.66 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=87.8
Q ss_pred HHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 018776 177 GALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVS 256 (350)
Q Consensus 177 ~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~ 256 (350)
..-+++...++++|..+++. ..|..+.+....++.....+. ...+.. +.. ....+.+..+...+++..+.+.+
T Consensus 9 ~w~~~~~~~~~~NK~~l~~~--~~P~~~~~~~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNVF--PYPYFKTLISLAVGSLYCLLS-WSSGLP-KRL---KISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHHH-HHhCCC-CCC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667888887753 346777766665554443322 101100 000 00112333344444555667778
Q ss_pred HHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 257 VLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 257 ~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
.+.+++++++...+++..+.|+++.+++.++++|+++..+++|++++++|+.+..
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999999998754
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.85 E-value=0.00047 Score=64.49 Aligned_cols=128 Identities=16% Similarity=0.051 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHH-HHHHHHHHHHH
Q 018776 174 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYG-VLVFEAMATFI 252 (350)
Q Consensus 174 ~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~-~l~l~~~~~~l 252 (350)
..++-.+++|...+..|...++ .+|.+..++-..++.+++++.....+.... ....+. .+..+.+....
T Consensus 12 ~~~~~~~iWg~~~~~~K~~~~~---~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 12 ALFALYIIWGSTYLVIRIGVES---WPPLMMAGVRFLIAGILLLAFLLLRGHPLP-------TLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHhhHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------cHHHHHHHHHHHHHHHHH
Confidence 3455677788888887755442 578889888888887776665433221100 111122 22333333334
Q ss_pred HHHHHHHHH-HhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 253 GQVSVLSLI-ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 253 ~~~~~~~~i-~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
++.+.+... ++.++...++...+.|+++.+++.+ ++|+++..+++|+++.+.|+.+-..
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 556666777 8899999999999999999999985 7999999999999999999988654
No 54
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.83 E-value=0.00022 Score=57.34 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHHHHH----HHhcccCCC--CCChhHHHHHHHH-HHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHH
Q 018776 54 YGWYFTFIQGFVYLVLI----YLQGFTTKQ--MMNPWKTYVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMV 126 (350)
Q Consensus 54 ~p~~lt~~q~~~~~~~~----~~~~~~~~~--~~~~~~~~~~ls~-~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~i 126 (350)
-|.+-|++..++...++ ...+..+.. ...+-+.|+.+|. ....+..+.+.|++-=++|-..=+..++|+++.+
T Consensus 30 dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~l 109 (140)
T COG2510 30 DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVL 109 (140)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHH
Confidence 36777777766644332 222332221 1112234555654 4567888999999998887777778899999999
Q ss_pred HHHhhccCccccChhhHHHHHHHHHHHHHHhc
Q 018776 127 MGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (350)
Q Consensus 127 l~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~ 158 (350)
+++++ +|||++..+|++++++++|+++++.
T Consensus 110 ls~lf--L~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 110 LSILF--LGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHH--hcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999 9999999999999999999987653
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.81 E-value=0.00049 Score=64.77 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhCCCC-ChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018776 184 FLGNLQEAIFTMNPET-TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIA 262 (350)
Q Consensus 184 ~~~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~ 262 (350)
.++++||++.++.... .+.-+.+.+....+....+.....+. ......| +......+++..++..+.+.+++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----PKSRKIP--LKKYAILSFLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----cCCCcCh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899998875433 34445555554444443332222220 0001111 22222234555677788889999
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCcccc
Q 018776 263 LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKR 321 (350)
Q Consensus 263 ~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~ 321 (350)
+.+-.+..+.-..+++.+.++|++++|++.+..++++.+++.+|+.+..+.+.+.++..
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 99999999999999999999999999999999999999999999999998876554433
No 56
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.80 E-value=0.00066 Score=65.31 Aligned_cols=140 Identities=15% Similarity=0.073 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHH
Q 018776 168 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 247 (350)
Q Consensus 168 ~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 247 (350)
++.-..+.+..-.++..+++++|.+++..+ -|+.+..+..+++..+..+... .+- .+.... ......+..++..+
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~--~P~~l~~~~~~~~~l~~~~~~~-~~~-~~~~~~-~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLP--LPWTISSLQLFVGWLFALLYWA-TGF-RKIPRI-KSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHHHHHH-hCC-CCCCCC-CCHHHHHHHHHHHH
Confidence 444445555666677777888998887642 2777777777666554333221 110 000000 00011233344445
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
+++..++...+.+++..++..++++..+.|+++++++.++++|+++..+++|++++++|+.+-..
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 56656666677899999999999999999999999999999999999999999999999998654
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.78 E-value=0.00026 Score=56.45 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 250 TFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 250 ~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
-.++++++..++++.+...+.....+.++.+.++|+++|||++|+.+++|+++++.|+.+-.
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34577788899999999998888889999999999999999999999999999999997754
No 58
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=9.6e-05 Score=68.37 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=126.2
Q ss_pred HHHHH-HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCCCCCC--
Q 018776 89 KLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP-- 165 (350)
Q Consensus 89 ~ls~~-~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~-- 165 (350)
..|.+ +..+-..++.|+.|.|.+..+=+-+.+.+..++++..+ ++||+++...++.+++++|-.+.....++...
T Consensus 68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 34543 66788899999999999988888889999999999999 99999999999999999998877666543321
Q ss_pred ----------CchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhh--ccchHH-HHHH-
Q 018776 166 ----------NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML--LTGELF-KAWN- 231 (350)
Q Consensus 166 ----------~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~-~~~~- 231 (350)
+.....+.....-.++ +..-....+++. ..++.|..+.++.-.+-.+- .-|... ...+
T Consensus 146 t~~el~~~~~~~~Fliy~~~iil~~~-----il~~~~~p~~g~---tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g 217 (335)
T KOG2922|consen 146 SVEEVWELATEPGFLVYVIIIILIVL-----ILIFFYAPRYGQ---TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG 217 (335)
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHH-----HHheeecccccc---cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence 1111222111111111 000001112221 12334544433321110000 001111 1100
Q ss_pred -HHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHhhcHHHHHHHHhH-HHHHHHHHHHHhcCC--Ccch----hhhhhHHH
Q 018776 232 -SCSQHLYVYGVLVFEAMATFIGQV-SVLSLIALFGAATTAMVTTA-RKAVTLLLSYLIFTK--PLTE----QHGTGLLL 302 (350)
Q Consensus 232 -~~~~~~~~~~~l~l~~~~~~l~~~-~~~~~i~~~sa~t~sv~~~l-~~v~~i~ls~~lfge--~~t~----~~~iG~~l 302 (350)
....+|..|..++....| ..-|. ..+.+++.+++...+.+.++ -..++++.|.++|+| ..+. ....|...
T Consensus 218 ~~ql~~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~t 296 (335)
T KOG2922|consen 218 NNQLFYPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVT 296 (335)
T ss_pred CcccccHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHH
Confidence 001234444433333333 23443 45788998888876666554 567888899999985 4444 45678888
Q ss_pred HHHHHHHHhccCCCCc
Q 018776 303 IAMGITLKLLPADDKP 318 (350)
Q Consensus 303 vl~Gv~ly~~~k~~~~ 318 (350)
++.|+++-...|..+.
T Consensus 297 i~~G~flL~~~kd~~~ 312 (335)
T KOG2922|consen 297 IFLGIFLLHRTKDMEI 312 (335)
T ss_pred hhheeeEeeeeccccc
Confidence 8889888755544433
No 59
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.73 E-value=0.0013 Score=61.66 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 018776 173 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFI 252 (350)
Q Consensus 173 ~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l 252 (350)
++.+++.++++...+..|...++ .+|.+..++-..++.+.+++...... .+ +..+...++....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~~~~~-----------~~--~~~~~~~g~~~~~ 70 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFVARPK-----------VP--LNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhcCCC-----------Cc--hHHHHHHHHHHHH
Confidence 44677889999999988866543 57888888877765544443221111 00 1112222222223
Q ss_pred HH-HHHHHHHHh-hcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 253 GQ-VSVLSLIAL-FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 253 ~~-~~~~~~i~~-~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
++ .+++...++ .++...+++....|+++.++++++++|+++..+++|.++.+.|+.+-..
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 33 345666776 5778889899999999999999999999999999999999999887653
No 60
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.71 E-value=0.00088 Score=62.80 Aligned_cols=130 Identities=15% Similarity=0.019 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHH
Q 018776 170 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 249 (350)
Q Consensus 170 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~ 249 (350)
.++++++.++++++...+..|...+. .+|....++-..++.+++++.. .. +. . ..+ .+..+.++++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~---~~P~~~~~~R~~~a~l~l~~~~--~~--~~-~---~~~--~~~~~~~~~l~ 70 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES---LGPVGGAAMIYSVSGLLLLLTV--GF--PR-L---RQF--PKRYLLAGGLL 70 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHHHHc--cc--cc-c---ccc--cHHHHHHHhHH
Confidence 35667888999999998888865554 4677777777666666655431 10 11 0 111 11122333332
Q ss_pred HHHHHHHHHHHHH----hhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 250 TFIGQVSVLSLIA----LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 250 ~~l~~~~~~~~i~----~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
....+.+.+..++ ..++...+++..+.|+++.++++++++|+++..+++|+++.+.|+.+-..
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2233334444443 46778889999999999999999999999999999999999999987653
No 61
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.57 E-value=0.0029 Score=59.18 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=61.7
Q ss_pred HHHHH-HHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 89 KLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 89 ~ls~~-~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
.++++ ..+...+.|+++++++.+...++-...|++..++++++ ++|++++.++++.+++++|++......
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 34544 44677788999999999999999999999999999999 999999999999999999999886554
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.46 E-value=0.0063 Score=55.89 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHH
Q 018776 168 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 247 (350)
Q Consensus 168 ~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 247 (350)
...+....+...+.++......+..... ..+.....++....+.+..++...... ... .......+..+....
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEP--RGL---RPALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhc--ccc---cccccchHHHHHHHH
Confidence 4556666677777777777776655443 123444444444444443222111100 000 011111223344455
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHH-HhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSY-LIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 317 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~-~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~ 317 (350)
+....++..++..+++.++...++.....|+++.+++. ++++|+++..+++|..+.+.|+.+-.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 56667778889999999999999999999999999996 77799999999999999999999988765543
No 63
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.46 E-value=0.0036 Score=59.69 Aligned_cols=142 Identities=14% Similarity=0.065 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHH--HHHH---HhhccchHHHHHHHHH-hchHHH
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLP--MLIP---PMLLTGELFKAWNSCS-QHLYVY 240 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~l~---~~~~~g~~~~~~~~~~-~~~~~~ 240 (350)
+...|+++.+++.+|++-..+-+|| .++. .+|.. |. ..+.. ++.| ..+..+++.+ ... .++..+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~---~~~~~~~~~~ 73 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW----SWETM-WS-VGGIFSWLILPWLIAALLLPDFWA---YYSSFSGSTL 73 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCC----chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHH---HHHhcCHHHH
Confidence 4578999999999999998888877 3332 24444 32 11111 1112 1122223222 222 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHH-HHHHhHHHHHHHHHHHHhcCCCc---c----hhhhhhHHHHHHHHHHHhc
Q 018776 241 GVLVFEAMATFIGQVSVLSLIALFGAATT-AMVTTARKAVTLLLSYLIFTKPL---T----EQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 241 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~-sv~~~l~~v~~i~ls~~lfge~~---t----~~~~iG~~lvl~Gv~ly~~ 312 (350)
..-+++++.-.++|+.++..+++.|-... .+..-+.-+.+.+.+.+++||-- + ....+|+++++.|+.+..+
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666899999999999997654 44455667788888999998522 2 3578899999999999998
Q ss_pred cCCCCc
Q 018776 313 PADDKP 318 (350)
Q Consensus 313 ~k~~~~ 318 (350)
...++.
T Consensus 154 Ag~~k~ 159 (345)
T PRK13499 154 AGQLKE 159 (345)
T ss_pred hhhhcc
Confidence 655443
No 64
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.45 E-value=0.0022 Score=60.08 Aligned_cols=132 Identities=15% Similarity=0.111 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHH
Q 018776 171 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 250 (350)
Q Consensus 171 G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~ 250 (350)
|++++++++++++...+..|++. + .++.+.+ . ..++..+.........+. . ...+..+..-.++++.-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g-~~~~~~~-~-~~~g~l~~~~~~~~~~~~-~-----~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---G-GPYSQTL-G-TTFGALILSIAIAIFVLP-E-----FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---C-CHHHHHH-H-HHHHHHHHHHHHHHHhCC-c-----ccccHHHHHHHHHHHHH
Confidence 57788999999999999888754 1 2333333 1 222322222111111110 0 01122332223333444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHh-HHHHHHHHHHHHhcCCCcchhh----hhhHHHHHHHHHHHhccC
Q 018776 251 FIGQVSVLSLIALFGAATTAMVTT-ARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t~sv~~~-l~~v~~i~ls~~lfge~~t~~~----~iG~~lvl~Gv~ly~~~k 314 (350)
..+|++++.++++.|....-.+.+ +.+++..+.|.++|||..+..+ ++|+++++.|+.+....+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 578999999999999999877777 7788999999999999999999 999999999999875553
No 65
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.0017 Score=59.26 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCc
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
++-.+.+...+.++++.+|.+..+....|.+++.++++++++++++..||+++.+.+.|+.+........+
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 33456778899999999999999999999999999999999999999999999999999999888765543
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.40 E-value=0.0015 Score=52.63 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhcHHH-HHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 251 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t-~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.++++++..++++.+-.. +++..-+.-+.+.+.|+++|||++|+.+++|+.+++.|+..-....
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 456677778888877654 6666778889999999999999999999999999999998875544
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.38 E-value=0.001 Score=54.43 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHH-HHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHh--hccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 87 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 87 ~~~ls~-~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l--~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
+..+++ ++.++..+.+.+++.+|.+.+.-+-+..++.+.+.++. + ++|+.+++++++++++++|+.++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 444555 47788999999999999998877777777777777774 6 799999999999999999999987654
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.26 E-value=0.0019 Score=52.07 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 87 YVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 87 ~~~ls~~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
+...-+++..++.+...+++++|.+. |.+......+.+.+++.++ ++|++++.+++++.++++|++.....+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34445567788999999999999986 4566678899999999999 999999999999999999999887654
No 69
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.25 E-value=0.0075 Score=57.40 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 239 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 239 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
+|.++++ +++=+.++++...+.++++.+...+......+++.++|++++++++++.|++|+.++++|+.+-......
T Consensus 79 ~w~y~ll-a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 79 WWKYFLL-ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4555555 4566789999999999999999999999999999999999999999999999999999999988777543
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.24 E-value=0.0039 Score=49.58 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhcHHH-HHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 251 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t-~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.+++++...++++.+-.. +++..-+.-+.+.+.|+++|||++|+.+++|+.+++.|+..-+..+
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 355666677788777654 6777778889999999999999999999999999999999986554
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0022 Score=50.17 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc
Q 018776 87 YVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (350)
Q Consensus 87 ~~~ls~~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~ 159 (350)
....-+++..+..+.-.|+|++|.++ |.+--....+-+.+.++++ ++|+.+..+++++.++++|++.....
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 33445567788899999999999986 5777778888999999999 99999999999999999999987654
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.09 E-value=0.023 Score=47.08 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHH
Q 018776 172 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 251 (350)
Q Consensus 172 ~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 251 (350)
.++.+.+-.+-+++..++-++.++.+ +++.-.+.+...++..+....+..++. ........| +| .+++++.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p-~w--~~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVP-WW--AYLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCC-hH--HhccHHHHH
Confidence 34556666677777777777766543 477777778878877776655544432 122122233 22 334666776
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHH-HHHHHHH-hcC---CCcchhhhhhHHHHHHHHHH
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAV-TLLLSYL-IFT---KPLTEQHGTGLLLIAMGITL 309 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~-~i~ls~~-lfg---e~~t~~~~iG~~lvl~Gv~l 309 (350)
+...+....+.+.|+..+......-++. ++++..+ +|| +++++...+|.++++.|+.+
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 6667778889999999888877775554 4444554 343 79999999999999999864
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.06 E-value=0.0044 Score=48.79 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=59.2
Q ss_pred HHHHHHHHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhc
Q 018776 88 VKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (350)
Q Consensus 88 ~~ls~~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~ 158 (350)
...-.++..+..+...+++.+|.++ |.+--....+.+.+.+.++ +||+.++.+++++.++++|++....
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3345567788899999999999886 5677778889999999999 8999999999999999999998754
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.97 E-value=0.0053 Score=48.65 Aligned_cols=66 Identities=8% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHH
Q 018776 89 KLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 156 (350)
Q Consensus 89 ~ls~~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~ 156 (350)
..-..+..+..+...++|++|.++ |.+--....+.+.+.+.++ ++|+.++.+++++.+++.|++..
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence 344567788889999999999986 5677778888999999999 89999999999999999999875
No 75
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.93 E-value=0.01 Score=46.79 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcHH-HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhc
Q 018776 251 FIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~-t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
.+++++...++++.+-. .+++..-+..+.+.+.|+++|||++|+.+++|+.+++.|+..-+.
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 35666677778877764 478888899999999999999999999999999999999987644
No 76
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.91 E-value=0.42 Score=45.69 Aligned_cols=219 Identities=10% Similarity=0.009 Sum_probs=124.1
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHH-HHhhcchHHHHHHHHhhccCcccc---C----hhhHHHHHHHHHHHHHHhc---
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKY---P----AHEYVSALLLVVGLILFTL--- 158 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~-v~ks~~pi~v~il~~l~~~l~~r~---~----~~~~~~v~l~~~Gv~l~~~--- 158 (350)
-+++....+.++..+.+|+.++... +.-....+...++..++ ++|=. + ..-.++++++++|+++.+.
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556678888999999998777554 44445566677777777 55422 1 3346889999999999988
Q ss_pred -cCCCCC-----CCchHHHHHHHHHHHHHHHhHHH-------HHHHHHhhCCCCChHhHHHHHHH---hHHH-HHHHHhh
Q 018776 159 -ADAQTS-----PNFSMIGVIMISGALIMDSFLGN-------LQEAIFTMNPETTQMEMLFCSTV---VGLP-MLIPPML 221 (350)
Q Consensus 159 -~~~~~~-----~~~~~~G~~~~l~s~~~~a~~~v-------~~~~l~~~~~~~~~~~~~~~~~~---~~~~-~~l~~~~ 221 (350)
.|.+.+ ..+...|+++++++.+.++.++. ..+.... .+ .++.....-+.+ ++.. ..+....
T Consensus 157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g-~~~~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LG-VDPLYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred hcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554221 23467999999999999999883 3322111 11 122211111110 1111 1111111
Q ss_pred c---cch-HHHHHHHHHhchHHHHH---HHHHHHHHHHHHHHHHHHHHhhcHHHHHH---HH-hHHHHHHHHHHHHhcCC
Q 018776 222 L---TGE-LFKAWNSCSQHLYVYGV---LVFEAMATFIGQVSVLSLIALFGAATTAM---VT-TARKAVTLLLSYLIFTK 290 (350)
Q Consensus 222 ~---~g~-~~~~~~~~~~~~~~~~~---l~l~~~~~~l~~~~~~~~i~~~sa~t~sv---~~-~l~~v~~i~ls~~lfge 290 (350)
. .++ .....++....+..+.- ..+.++.-.+++.++...-++.|.....+ .+ .+.-+++.+.|++ ++|
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE 313 (345)
T PRK13499 235 IRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKE 313 (345)
T ss_pred HHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhh
Confidence 0 000 00000000000111221 23344444566677777777665443333 33 6666888899984 888
Q ss_pred Ccc------hhhhhhHHHHHHHHHHHhcc
Q 018776 291 PLT------EQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 291 ~~t------~~~~iG~~lvl~Gv~ly~~~ 313 (350)
.=+ ...++|.++++.|..+-.+.
T Consensus 314 ~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 314 WKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred ccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 655 56799999999999887654
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.88 E-value=0.0078 Score=47.85 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHH-HHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~-~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
.-+++..++.+...+++.+|.+.+ .+--....+.+.+.++++ ++|+.++.+++++.++++|++.....+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344577888888999999999865 454557888889999999 999999999999999999999987644
No 78
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.86 E-value=0.0032 Score=57.44 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHhHHHHHHHHHHHH-hcCCC-----cchhhhhhHHHHHHHHHHHhccCCC
Q 018776 244 VFEAMATFIGQVSVLSLIALFGA-ATTAMVTTARKAVTLLLSYL-IFTKP-----LTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 244 ~l~~~~~~l~~~~~~~~i~~~sa-~t~sv~~~l~~v~~i~ls~~-lfge~-----~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.+++..-+.++.+..-+++..|= +-..+.++..-+.....|-+ +||.+ -.+.+++|++++++|..++...|..
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 33444444566666666666663 33555566666677777655 67632 2468999999999999999998876
Q ss_pred Ccc
Q 018776 317 KPI 319 (350)
Q Consensus 317 ~~~ 319 (350)
+++
T Consensus 139 ~~~ 141 (254)
T PF07857_consen 139 EKE 141 (254)
T ss_pred CCC
Confidence 643
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.83 E-value=0.014 Score=46.32 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhcHHH-HHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 251 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t-~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
.+++++...++++.+-.+ +++..-+.-+.+.+.|+++|||++|+.+++|+++++.|+..-.
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 356666677788777654 7888888999999999999999999999999999999998743
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.012 Score=46.07 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhcHH-HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 252 IGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~-t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
+++.+....+|+.+-. .+++.+-+-.+.+.+.|+++|||++++.+++|+.+++.|+..-+..
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 4556666778887754 4888899999999999999999999999999999999999876654
No 81
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.71 E-value=0.0027 Score=60.02 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCcccccc
Q 018776 244 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTA 323 (350)
Q Consensus 244 ~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~ 323 (350)
+..|..-+++++.+..+++.++....+++.+...++++.++.++-+|++|....++..+.++|+.+.+..+.+++....+
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a 242 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence 33455667899999999999999999999999999999999999999999999999999999999999998877665555
Q ss_pred ccchhhh
Q 018776 324 TSSFKVN 330 (350)
Q Consensus 324 ~~~~~~~ 330 (350)
.++..-|
T Consensus 243 ~~~llG~ 249 (416)
T KOG2765|consen 243 SRPLLGN 249 (416)
T ss_pred cchhHHH
Confidence 5555544
No 82
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.59 E-value=0.03 Score=52.68 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHH
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 246 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~ 246 (350)
+..+|..+++.++++.+...++||+-..+.++.+ .. .++ ..... ..+|.+|.=+.+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-~~-------------------~~~--~~~~~-l~~~~W~~G~~~~ 60 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-LR-------------------AGS--GGRSY-LRRPLWWIGLLLM 60 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc-------------------ccc--hhhHH-HhhHHHHHHHHHH
Confidence 4689999999999999999999998766543210 00 000 00000 1223333212221
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 247 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 247 ~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
.+++...+.++...++...+..+.+.-+++.+++.++++|+++...++|.++++.|..+-....
T Consensus 61 ----~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 61 ----VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred ----hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 2455556677888899999999999999999999999999999999999999999998765543
No 83
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.34 E-value=0.0011 Score=59.91 Aligned_cols=72 Identities=18% Similarity=0.422 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 243 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 243 l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+++-++.++.|.+..|++..+.+-.-+++++...|++++++++++++|+.|....+|..+.+.|+.+-....
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 445566777888888999999999999999999999999999999999999999999999999999977654
No 84
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.92 E-value=0.071 Score=49.07 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHH-HHHHHHHhcCCCcchhh----hhhHHHHHHHHHHHhccC
Q 018776 240 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAV-TLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 240 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~-~i~ls~~lfge~~t~~~----~iG~~lvl~Gv~ly~~~k 314 (350)
+..-++++++-.++|...+...++.|-..+..+++--+++ +.+.++++|||--+..+ .+++++++.|+.+.++.+
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 3334556666678999999999999999888888665555 78899999999766544 458889999999998877
Q ss_pred CCCcc
Q 018776 315 DDKPI 319 (350)
Q Consensus 315 ~~~~~ 319 (350)
+++++
T Consensus 125 ~~~~~ 129 (269)
T PF06800_consen 125 KKSDK 129 (269)
T ss_pred ccccc
Confidence 65553
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.90 E-value=0.034 Score=42.72 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhcHHH-HHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 018776 250 TFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 303 (350)
Q Consensus 250 ~~l~~~~~~~~i~~~sa~t-~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lv 303 (350)
-.++.+++..++++.+..+ +.+..-+..+.+.+.|+++|||++|+.+++|+.++
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3456677778888887766 46677788899999999999999999999999875
No 86
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.53 Score=44.65 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+-|...|....+.+|.+..+...+|-..|.+++++++++.++..||...++.+.|+.+.++..
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 445688999999999999999999999999999999999999999999999999999998544
No 87
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.53 Score=39.38 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHH
Q 018776 169 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 248 (350)
Q Consensus 169 ~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~ 248 (350)
...+++.+.+-.+-.++...+.|+.+..+ +|.--.+.+...++..++...+.... .+.+.....+|+ |. +..++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pw-W~--~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPW-WA--WIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCch-HH--HHccc
Confidence 44566667777777778888888766543 46666666777777666554333221 111222233342 22 22233
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhHHHHH-HHHHHHHh-cC---CCcchhhhhhHHHHHHHHHHHhcc
Q 018776 249 ATFIGQVSVLSLIALFGAATTAMVTTARKAV-TLLLSYLI-FT---KPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 249 ~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~-~i~ls~~l-fg---e~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
++++.-...-....+.|+.++..+...-++. +.++..+= || .+++...++|++++++|+++....
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3333333344566788887766665554443 44444442 33 689999999999999997665543
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.25 E-value=0.091 Score=46.92 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=55.2
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHH
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l 155 (350)
+.++......+-++.++|.+..+..+.-+..++++.+++.++ ++++++..++.+..++..|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence 344555666678899999999899999999999999999999 8999999999999999888653
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.20 E-value=0.026 Score=44.87 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHHHHHhhhhcCchhHHH-HHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHH
Q 018776 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 156 (350)
Q Consensus 86 ~~~~ls~~~~~~~~l~~~al~~~s~~~~~-v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~ 156 (350)
+|...=+++..+....++.+...+.+... +..++.-++|++.++++ .+|..+++.+++++++++|+.+.
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence 35544456667777888899998888766 45789999999999998 56777888899999999998754
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.19 E-value=0.045 Score=42.04 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHH
Q 018776 93 VLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLL 149 (350)
Q Consensus 93 ~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~ 149 (350)
++..+..+...+++++|.+. |.+......+.+.+.+.++ ++|+.++.+++++.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence 67788889999999999886 4677778899999999999 8999999999998764
No 91
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.88 E-value=0.57 Score=42.48 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=55.6
Q ss_pred hhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc
Q 018776 96 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (350)
Q Consensus 96 ~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~ 159 (350)
.-..+...+++.+|.++..++-|..|.+-.+.++++ ++|+++..||+++..++.+..=.+++
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhccccc
Confidence 556788999999999999999999999999999999 99999999999999988887755443
No 92
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.84 E-value=0.55 Score=44.46 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHH-HHHhHHHHHHHHh---hccchHHHHHHHHHhch-HHHH
Q 018776 167 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFC-STVVGLPMLIPPM---LLTGELFKAWNSCSQHL-YVYG 241 (350)
Q Consensus 167 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---~~~g~~~~~~~~~~~~~-~~~~ 241 (350)
.-..|+++..+..++++.+.+=.||+.+ . .+|.... ..+++.. .+|.. +...++.+ .....| ..+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~-W----sWEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~---i~~~~~~~~l~ 74 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG-W----SWESYWLVQGIFSWL-IVPWLWALLAIPDFFS---IYSATPASTLF 74 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC-c----cHHHHHHHHHHHHHH-HHHHHHHHHhCCcHHH---HHHhCChhHHH
Confidence 4578999999999999988877776422 2 2443322 2222221 22221 22223322 223333 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHH-HHHHHHhHHHHHHHHHHHHhcC-------CCcchhhhhhHHHHHHHHHHHhcc
Q 018776 242 VLVFEAMATFIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFT-------KPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 242 ~l~l~~~~~~l~~~~~~~~i~~~sa~-t~sv~~~l~~v~~i~ls~~lfg-------e~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
...+.++.--++.+.+-..+++.|-. ..++.--+..++..++--++.| .+-...-++|.++++.|+.+..+.
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 33333444446777777788887743 4555554545555555444322 333457899999999999999888
Q ss_pred CCCCc
Q 018776 314 ADDKP 318 (350)
Q Consensus 314 k~~~~ 318 (350)
..+|.
T Consensus 155 G~~Ke 159 (344)
T PF06379_consen 155 GSMKE 159 (344)
T ss_pred HHhhh
Confidence 65443
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.81 E-value=0.12 Score=48.67 Aligned_cols=137 Identities=8% Similarity=0.041 Sum_probs=91.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCChhhHHHHHHHHHHHHHHH-Hh-----cccC-----CCCCChhHH
Q 018776 20 PKWQQFLICSSGFFFGYLVNGVCEEYVYN--RLQFSYGWYFTFIQGFVYLVLIY-LQ-----GFTT-----KQMMNPWKT 86 (350)
Q Consensus 20 p~~~~l~~~~~gi~~~~~~~~~~~e~i~~--~~~f~~p~~lt~~q~~~~~~~~~-~~-----~~~~-----~~~~~~~~~ 86 (350)
..|..++.+..++ +.+.+..++.|++++ +++.+....+ ..|.-+.++... +. +... .+...+...
T Consensus 160 fn~~G~i~a~~s~-~~~al~~I~~~~ll~~~~~~~~~~~ll-~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~ 237 (316)
T KOG1441|consen 160 FNLFGFISAMISN-LAFALRNILSKKLLTSKGESLNSMNLL-YYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI 237 (316)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHHHhhhccccccCchHHH-HHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH
Confidence 3455665555544 466788899999885 3444432222 223222222222 21 1110 011111222
Q ss_pred HHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 87 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 87 ~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
....++++.+.+...+..+..++.-+++++-..|=+.+.+.++++ ++++.++.+.+|.++.++|+.+.....
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 233466677788899999999999999999999999999999999 899999999999999999999987644
No 94
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.0099 Score=53.31 Aligned_cols=207 Identities=13% Similarity=0.189 Sum_probs=127.1
Q ss_pred HHHHhhHHHHHhhhhcCchhHHH-HHhhcchHHHHHHHHhhccCccccChhhH----HHHHHHHHHHHHHhccCCCC---
Q 018776 92 AVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQT--- 163 (350)
Q Consensus 92 ~~~~~~~~l~~~al~~~s~~~~~-v~ks~~pi~v~il~~l~~~l~~r~~~~~~----~~v~l~~~Gv~l~~~~~~~~--- 163 (350)
+.....-..++.|.+++.++.+. +-..+..+-+-+++.+. ++|-.+..+. .++++++.|+.+-++.|.++
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 34456777889999998776544 22223445566778888 8998887774 56788899999998887522
Q ss_pred -CCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHh-hccchHHHHHHHHHhchHHHH
Q 018776 164 -SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-LLTGELFKAWNSCSQHLYVYG 241 (350)
Q Consensus 164 -~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~~~~~~~~ 241 (350)
++++.-.|+...+.|.+-+-.|.+..+.. + .+.+....-++ ++........ ....|.. .+-..|.
T Consensus 145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f-~----v~g~saiLPqA-iGMv~~ali~~~~~~~~~-------~~K~t~~ 211 (288)
T COG4975 145 ENPSNLKKGIVILLISTLGYVGYVVLFQLF-D----VDGLSAILPQA-IGMVIGALILGFFKMEKR-------FNKYTWL 211 (288)
T ss_pred cChHhhhhheeeeeeeccceeeeEeeeccc-c----ccchhhhhHHH-HHHHHHHHHHhhcccccc-------hHHHHHH
Confidence 23345678877777777766666554321 1 12222222221 2222211110 1111110 0111232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchh----hhhhHHHHHHHHHHHhccC
Q 018776 242 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 242 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~----~~iG~~lvl~Gv~ly~~~k 314 (350)
.++ .++.-..++++++..-++.|-.|.=..+.+.-+++.+.|+++++|+=|.. -++|+++++.|..+-...|
T Consensus 212 nii-~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 212 NII-PGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HHh-hHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 222 23344578888888888888777666667778899999999999988864 4678888888887766554
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.83 E-value=0.46 Score=37.82 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHH-HhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 018776 251 FIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 309 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t~sv~-~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~l 309 (350)
..|...+++.+++.+=+.+..+ +.+.-++|.+.++++.+|..+...++|+++++.|+.+
T Consensus 52 q~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 52 QSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3566777788888887766665 5888999999998888888899999999999999865
No 96
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=91.43 E-value=6.8 Score=32.32 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHH----HHhcccC--CCCCChhHHHHHHHHHHHhhHHHHHhhhhcCchhHHHHHh-hcchHHHHH
Q 018776 54 YGWYFTFIQGFVYLVLI----YLQGFTT--KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFK-STKVLPVMV 126 (350)
Q Consensus 54 ~p~~lt~~q~~~~~~~~----~~~~~~~--~~~~~~~~~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~k-s~~pi~v~i 126 (350)
.|+.-+++.+.+..+.. ...+.+. ..++.||+.|+ =+++-.....+...+...+.++..+++- ....+.-++
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 46666666555543321 1222211 12356777665 3555556666777888888877655433 345555666
Q ss_pred HHHh--hccCccccChhhHHHHHHHHHHHHH
Q 018776 127 MGAF--IPGLRRKYPAHEYVSALLLVVGLIL 155 (350)
Q Consensus 127 l~~l--~~~l~~r~~~~~~~~v~l~~~Gv~l 155 (350)
++.+ ++--++++++++.+++.++++|+.+
T Consensus 108 iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7764 2114789999999999999999864
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.77 E-value=0.28 Score=43.96 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 317 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~ 317 (350)
++....+.+++...=-|..+--+.||+-..++|+.+.++.-.+..+.-..++..|+.++.|...|.
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 345667788888888888888899999999999999999999999999999999999998875443
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.48 E-value=3.4 Score=38.54 Aligned_cols=127 Identities=14% Similarity=0.220 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhhCC--CC----ChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 018776 184 FLGNLQEAIFTMNP--ET----TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSV 257 (350)
Q Consensus 184 ~~~v~~~~l~~~~~--~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~ 257 (350)
.++++|||++.+.- +. ++.-+.+.+.+.+.......+ . .+.-...+...|..-...++...++..+.
T Consensus 28 ~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l--~-----~~k~~~~~~apl~~y~~is~tn~~s~~~~ 100 (327)
T KOG1581|consen 28 TWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAML--K-----WWKKELSGVAPLYKYSLISFTNTLSSWCG 100 (327)
T ss_pred HHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHH--h-----cccccCCCCCchhHHhHHHHHhhcchHHH
Confidence 45689999987531 11 223344455554443332111 0 01100112222332333456666777888
Q ss_pred HHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCC
Q 018776 258 LSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 317 (350)
Q Consensus 258 ~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~ 317 (350)
+-++++.|=-|..+.-..|-+..++.+.++.+.+.++...+-..++-.|+.+..+.+...
T Consensus 101 yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 101 YEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999886544
No 99
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.50 E-value=0.24 Score=44.68 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHHHHHHH
Q 018776 171 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 250 (350)
Q Consensus 171 G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~ 250 (350)
+++.+++=++.|+.......|. + ..|.+...-+.+=++.+.+...+...+.. ++..+..-++++..-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~----G-G~p~qQ~lGtT~GALifaiiv~~~~~p~~--------T~~~~iv~~isG~~W 69 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF----G-GKPYQQTLGTTLGALIFAIIVFLFVSPEL--------TLTIFIVGFISGAFW 69 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec----C-CChhHhhhhccHHHHHHHHHHheeecCcc--------chhhHHHHHHhhhHh
Confidence 3455666677777665544332 1 24566655554433333332222211110 111222223344444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHhHHH-HHHHHHHHHhcCCCcchhh----hhhHHHHHHHHHHHhccCCC
Q 018776 251 FIGQVSVLSLIALFGAATTAMVTTARK-AVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t~sv~~~l~~-v~~i~ls~~lfge~~t~~~----~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.+||...+..++..|...+..+++-.+ +.+.+.|++.|||--++.+ .+.+++++.|+++.++.++.
T Consensus 70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 578999999999999988888776644 5577899999999777654 45677888898888877653
No 100
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=87.20 E-value=0.55 Score=40.96 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 252 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 252 l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
.+++.+..++++.+|+.++-+...++.+.-+++++.+||++....++..++.+.|+.+-.|...
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 4678888999999999999999999999999999999999999999999999999998877643
No 101
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=85.61 E-value=2.3 Score=39.29 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 248 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 248 ~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
+|-..|....|..+..++|+...+.--..-+++-++|.-+++++++..||+|+..+..|+....+.
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 444456666778888899999988888888999999999999999999999999999999887654
No 102
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=84.43 E-value=0.3 Score=44.70 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHhhcchHHHHHHHHhhccCccccChh-hHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHH
Q 018776 112 AQLMFKSTKVLPVMVMGAFIPGLRRKYPAH-EYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQE 190 (350)
Q Consensus 112 ~~~v~ks~~pi~v~il~~l~~~l~~r~~~~-~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~ 190 (350)
..+++.|...+.++++-.++. ||||.=.. -.+|++++.+-..+.+.-.. ..+.-+.|+++.++.+++.-..+.|.+
T Consensus 51 a~~vl~sfAvvliiIIiIIml-F~RrLLCPLGlLCiilimi~lLv~~L~tL--tGQ~LF~Gi~~l~l~~lLaL~vW~Ym~ 127 (381)
T PF05297_consen 51 ALTVLYSFAVVLIIIIIIIML-FKRRLLCPLGLLCIILIMIVLLVSMLWTL--TGQTLFVGIVILFLCCLLALGVWFYMW 127 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhhcCcchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333322221 56665443 35666655555444443221 123457888776666655544555644
Q ss_pred HHHhhCCCCChHhHHHHH
Q 018776 191 AIFTMNPETTQMEMLFCS 208 (350)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~ 208 (350)
++++++ .+.++++.+.
T Consensus 128 -lLr~~G-As~WtiLaFc 143 (381)
T PF05297_consen 128 -LLRELG-ASFWTILAFC 143 (381)
T ss_dssp ------------------
T ss_pred -HHHHhh-hHHHHHHHHH
Confidence 556654 3456665443
No 103
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=82.39 E-value=6.8 Score=36.18 Aligned_cols=121 Identities=10% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHhhhhhccCCCChhhHHHHHHHHHHHHHHHH---------hcccCCCCCChhHHH-HHHHHHHHh-hHHHHHhhh
Q 018776 37 LVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYL---------QGFTTKQMMNPWKTY-VKLSAVLMG-SHGLTKGSL 105 (350)
Q Consensus 37 ~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~ls~~~~~-~~~l~~~al 105 (350)
..-|++||..+++++-+....+-..|++---.+... ..+..++-..|.... ++....|.+ +...++.+.
T Consensus 177 a~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~Ci 256 (330)
T KOG1583|consen 177 AYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCI 256 (330)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHH
Confidence 345788999999887666666655665442122111 111111111111111 223333433 334566666
Q ss_pred hcCchhHH-------HHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc
Q 018776 106 AFLNYPAQ-------LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (350)
Q Consensus 106 ~~~s~~~~-------~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~ 159 (350)
+.+..=+. ++.-...=....+++.+. ++..+++..|+|..+++.|.++++..
T Consensus 257 kgVy~L~te~~sLTVTlvltlRKFvSLl~Siiy--F~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 257 KGVYILTTETSSLTVTLVLTLRKFVSLLFSIIY--FENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HhhhhhhceecceEEEEeeeHHHHHHHhheeeE--ecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66542111 111112234456778777 89999999999999999999988753
No 104
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=81.44 E-value=0.74 Score=42.80 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHH---hcCCCcc--hhhhhhHHHHHHHHHHHhcc
Q 018776 247 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYL---IFTKPLT--EQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 247 ~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~---lfge~~t--~~~~iG~~lvl~Gv~ly~~~ 313 (350)
++.--+++++.-+.+...|-..+-+++.- +++++|.. +.+.+.+ ..-+.|.+++++++++-...
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~g---lalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~a 147 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIG---LALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAA 147 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecc---eEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHH
Confidence 33334677777777777666554444422 23333333 2345554 35566888888888776543
No 105
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=80.08 E-value=2.3 Score=33.17 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhHHHHHhhhhcCchhHHH-HHhhcchHHHHHHHHhhccCccccChhh-HHHHHHHHHHHHHH
Q 018776 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHE-YVSALLLVVGLILF 156 (350)
Q Consensus 86 ~~~~ls~~~~~~~~l~~~al~~~s~~~~~-v~ks~~pi~v~il~~l~~~l~~r~~~~~-~~~v~l~~~Gv~l~ 156 (350)
+|...-+++-....+.++-++..+.+.++ +..+.+.+++.+.+..+ +|+..-++ .++..++++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L---GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL---GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh---ccccccceeehhhhHHhhhhhhe
Confidence 45555556666777788888888877665 56677889999999887 67776555 68888999998764
No 106
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=79.27 E-value=2 Score=35.29 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q 018776 298 TGLLLIAMGI 307 (350)
Q Consensus 298 iG~~lvl~Gv 307 (350)
+|..+...|+
T Consensus 91 ~g~~~~~~G~ 100 (136)
T PF08507_consen 91 IGLLLFLVGV 100 (136)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 107
>PRK01637 hypothetical protein; Reviewed
Probab=78.58 E-value=3.9 Score=38.13 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHhccC
Q 018776 294 EQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 294 ~~~~iG~~lvl~Gv~ly~~~k 314 (350)
|.++.+.++.+++.+-+.+.+
T Consensus 248 Wlyl~~~ilL~Gaelna~~~~ 268 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLGE 268 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776666543
No 108
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.13 E-value=46 Score=30.87 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=39.1
Q ss_pred hhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccCC
Q 018776 110 YPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 161 (350)
Q Consensus 110 ~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~~ 161 (350)
+.++.++....=..|.++++++ +-|.++....-+.++++.|+.+-.+++.
T Consensus 286 A~~aatvTTaRKavTi~lSfll--FsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 286 ALIAATVTTARKAVTILLSFLL--FSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hhHHHHHHHhHhHHHHHHHHHH--HcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 3444444445556788999999 8999999888899999999999888763
No 109
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=77.80 E-value=12 Score=36.54 Aligned_cols=8 Identities=25% Similarity=0.069 Sum_probs=4.3
Q ss_pred CccccChh
Q 018776 134 LRRKYPAH 141 (350)
Q Consensus 134 l~~r~~~~ 141 (350)
+.||+.++
T Consensus 13 le~~~~~~ 20 (378)
T PF05684_consen 13 LEQKTKWG 20 (378)
T ss_pred Hhcchhhh
Confidence 34555555
No 110
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.17 E-value=27 Score=32.88 Aligned_cols=134 Identities=6% Similarity=0.064 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHh---hccchHHHHHHHHHhchHHHHHHHHHH
Q 018776 171 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM---LLTGELFKAWNSCSQHLYVYGVLVFEA 247 (350)
Q Consensus 171 G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~g~~~~~~~~~~~~~~~~~~l~l~~ 247 (350)
....++..++++.+..+.+|.+...++-...+.++.++++.+.......- +.+.+- +....+..|..+-+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~-----l~~~~~kk~~P~~~-- 85 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP-----LDLRTAKKWFPVSL-- 85 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC-----cChHHHHHHccHHH--
Confidence 34445556666666777888777765422334455678776655443221 111110 00112222321111
Q ss_pred HHHHHHH-HHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhcc
Q 018776 248 MATFIGQ-VSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 248 ~~~~l~~-~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
+ +.++ +.-...+++.+--+..+..++.++.+.+.-.++||...+...|......++|...+...
T Consensus 86 l--f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 86 L--FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred H--HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence 1 1222 33346788888889999999999999999999999999999999999999998887654
No 111
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=71.80 E-value=3.3 Score=29.61 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhccCCCCccccccc
Q 018776 300 LLLIAMGITLKLLPADDKPIKRTAT 324 (350)
Q Consensus 300 ~~lvl~Gv~ly~~~k~~~~~~~~~~ 324 (350)
+++.+.+.+...|.|.|+.||++.+
T Consensus 42 i~~~~lt~ltN~YFK~k~drr~~a~ 66 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRRKAAR 66 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhhHhhc
Confidence 4445556666677888777776644
No 112
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=69.57 E-value=1.1e+02 Score=29.52 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=33.6
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHH--HHHHHHHHhccCCCCccccccccchhhhhhhccccchh
Q 018776 263 LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL--IAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSERE 340 (350)
Q Consensus 263 ~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~l--vl~Gv~ly~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (350)
-.||.++++++.+.+ .+.++..+++.+.+ .+.|+..-.....|+.|..++--..+..+.+...++++
T Consensus 142 PiSAA~~~~~~~l~~-----------~~gv~~~~iL~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~ 210 (364)
T PF03605_consen 142 PISAATVAMIAILAP-----------AHGVSLLQILAVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPI 210 (364)
T ss_pred cHHHHHHHHHHHHcc-----------ccCCCHHHHHHhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhcccccccc
Confidence 345555555554444 15667777776665 56666655444333333222222344444444444443
Q ss_pred hh
Q 018776 341 EA 342 (350)
Q Consensus 341 ~~ 342 (350)
++
T Consensus 211 ~~ 212 (364)
T PF03605_consen 211 KE 212 (364)
T ss_pred cc
Confidence 33
No 113
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.88 E-value=2.7 Score=39.44 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=80.8
Q ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHHHHHHHhhccchHHHHHHHHHhchHHHHHHHH
Q 018776 166 NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVF 245 (350)
Q Consensus 166 ~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~l~l 245 (350)
.++..|..+.+.+.+.-+..-+++||-.++.... ..+ ..+|... .. .++.+|.-++.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~-~~r-----------------a~~gg~~----yl-~~~~Ww~G~lt 73 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGAS-GLR-----------------AGEGGYG----YL-KEPLWWAGMLT 73 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhh-ccc-----------------ccCCCcc----hh-hhHHHHHHHHH
Confidence 4568898888888887777777777655542110 000 0011111 01 12233322222
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCc
Q 018776 246 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 246 ~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
. .+|...-|.+-..-+++-.+..+.+.-+.+.+++..+++|.++....+|.++++.|..+-.....+++
T Consensus 74 m----~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 74 M----IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred H----HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 2 24444445555567777788888899999999999999999999999999999999877665544443
No 114
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=67.06 E-value=3.4 Score=31.44 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=15.6
Q ss_pred chhhhhhHHHHHHHHHHHhcc
Q 018776 293 TEQHGTGLLLIAMGITLKLLP 313 (350)
Q Consensus 293 t~~~~iG~~lvl~Gv~ly~~~ 313 (350)
+...++|+.+.++|.+++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888887664
No 115
>PF14851 FAM176: FAM176 family
Probab=65.91 E-value=5.2 Score=33.60 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=4.6
Q ss_pred hHHHHHHHHHH
Q 018776 299 GLLLIAMGITL 309 (350)
Q Consensus 299 G~~lvl~Gv~l 309 (350)
|+++.++-+..
T Consensus 33 GLlLtLcllV~ 43 (153)
T PF14851_consen 33 GLLLTLCLLVI 43 (153)
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 116
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=65.61 E-value=94 Score=27.24 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 283 LSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 283 ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+|..+|++-.=+...+|..+..+=+..-...+
T Consensus 135 iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 135 IGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666666666788888877544333333343
No 117
>PRK15049 L-asparagine permease; Provisional
Probab=63.00 E-value=1.2e+02 Score=30.52 Aligned_cols=12 Identities=42% Similarity=0.368 Sum_probs=6.4
Q ss_pred chhhhhhhhcCC
Q 018776 338 EREEADEEKRAP 349 (350)
Q Consensus 338 ~~~~~~~~~~~~ 349 (350)
.+-|||||+|..
T Consensus 480 ~~~~~~~~~~~~ 491 (499)
T PRK15049 480 PVVEEDEEKQEI 491 (499)
T ss_pred Ccccccccccce
Confidence 344566666543
No 118
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=62.11 E-value=7.7 Score=37.43 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCCcchhhhhhHHHHHHHHHHHhccC--CCCccccccccchhhhhhhccccchhhhhhhhcC
Q 018776 289 TKPLTEQHGTGLLLIAMGITLKLLPA--DDKPIKRTATSSFKVNIRKLSFSEREEADEEKRA 348 (350)
Q Consensus 289 ge~~t~~~~iG~~lvl~Gv~ly~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (350)
...+...+++|+++.+.-+....... +++-++.++..+.+.-++.+.++| ++.|+||++
T Consensus 293 ~~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k~~~~~~e~~~l~~~dG~~-~~~d~Ek~G 353 (426)
T KOG2592|consen 293 VSTFDATNIIGLIFLLLCILYSALRASSRTQLRKLTRSNEEEPLLPDEDGGG-RANDNEKDG 353 (426)
T ss_pred cccccccchHHHHHHHHHHHHHHhhccccccccccccccccccCccCCCCCc-ccccccCCC
Confidence 34666788999988877766555443 222223333333333355455554 667777765
No 119
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=61.11 E-value=3.5 Score=36.88 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=11.1
Q ss_pred HHHHHHHHhccCCCCcccccc
Q 018776 303 IAMGITLKLLPADDKPIKRTA 323 (350)
Q Consensus 303 vl~Gv~ly~~~k~~~~~~~~~ 323 (350)
+++|...|-|.|.+++|.+..
T Consensus 170 ~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHhhcceEEEEEEeccccccc
Confidence 334446666666655544443
No 120
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.83 E-value=1.1e+02 Score=25.69 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHHHHH---HHHhccc--C--CCCCChhHHHHHHHHHHHhhHHHHHhhhhcCchhH-HHHHhhcchHHH
Q 018776 53 SYGWYFTFIQGFVYLVL---IYLQGFT--T--KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPV 124 (350)
Q Consensus 53 ~~p~~lt~~q~~~~~~~---~~~~~~~--~--~~~~~~~~~~~~ls~~~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v 124 (350)
..|+.-++.-+.++.+. +.+...+ . ..++.||+.|.. +++-......+-.....+...+ ..+.-+...+.-
T Consensus 32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 45666666666664322 1111111 1 224678887752 2222222222233334444443 334444555555
Q ss_pred HHHHHhhcc---CccccChhhHHHHHHHHHHHHHHhc
Q 018776 125 MVMGAFIPG---LRRKYPAHEYVSALLLVVGLILFTL 158 (350)
Q Consensus 125 ~il~~l~~~---l~~r~~~~~~~~v~l~~~Gv~l~~~ 158 (350)
++++.+ ++ -++++++.++++++++++|+.++..
T Consensus 111 lliD~f-G~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 111 LLIDHF-GWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HHHHhh-cccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 665543 21 2589999999999999999665543
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=58.22 E-value=11 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 018776 281 LLLSYLIFTKPLTEQHGTGLLLIAMGITL 309 (350)
Q Consensus 281 i~ls~~lfge~~t~~~~iG~~lvl~Gv~l 309 (350)
...|++.++|++++.+..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999999888754
No 122
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=57.16 E-value=23 Score=31.79 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred HHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhc
Q 018776 90 LSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 158 (350)
Q Consensus 90 ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~ 158 (350)
-|++.++-.+++-|+++-++..++.+.-+..-.+..+-+.++ +++..++....++++..+..++.+.
T Consensus 230 Sgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 230 SGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred HHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 355566667788889999999999998888888888888888 8888888888777766655555443
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=56.89 E-value=45 Score=26.14 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=35.8
Q ss_pred HHhhHHHHHhhhhcCchhH-HHHHhhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHH
Q 018776 94 LMGSHGLTKGSLAFLNYPA-QLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 155 (350)
Q Consensus 94 ~~~~~~l~~~al~~~s~~~-~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l 155 (350)
|+...-.+-++.+..|.+- .++=-..+....+.++.++ +||++++....+.++++.++..
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~--l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFY--LGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHH--hCCCccHHHHHHHHHHHHhhhe
Confidence 4455555555555533321 1111122344445677788 8999999999988888776543
No 124
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=55.11 E-value=1e+02 Score=30.57 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=9.1
Q ss_pred hhhhhHHHHHHHHHHHhc
Q 018776 295 QHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 295 ~~~iG~~lvl~Gv~ly~~ 312 (350)
...++.++.++.+..|.+
T Consensus 177 YF~~a~~v~l~~i~~~~~ 194 (437)
T TIGR00939 177 YFGTPCVVQLICIVCYLL 194 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555533
No 125
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=54.97 E-value=2.2e+02 Score=28.14 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=8.0
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 018776 268 TTAMVTTARKAVTLLLSYL 286 (350)
Q Consensus 268 t~sv~~~l~~v~~i~ls~~ 286 (350)
..++.+..-.+...+.+++
T Consensus 384 ~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 384 ISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred hhhhhhccccHHHHHHHHH
Confidence 3344443333444444443
No 126
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=54.65 E-value=1.6 Score=30.41 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.6
Q ss_pred CCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 290 KPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 290 e~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+..+...++|..++.+|.+.|+....
T Consensus 14 HR~tV~~Lig~T~~~g~~~~~~~y~~ 39 (59)
T PF14880_consen 14 HRTTVLGLIGFTVYGGGLTVYTVYSY 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888888876544
No 127
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=53.29 E-value=49 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=13.1
Q ss_pred HhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 286 LIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 286 ~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+=.+.+.+...++++++. ..+..+.+.+
T Consensus 60 lGi~~~~n~lf~~~i~~l-l~~~~~l~~~ 87 (115)
T PF10066_consen 60 LGIGRPPNLLFYLGILFL-LVIIFSLYVR 87 (115)
T ss_pred HCCCchhHHHHHHHHHHH-HHHHHHHHHH
Confidence 334555555555554443 3444444443
No 128
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=51.74 E-value=2.7e+02 Score=28.10 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.9
Q ss_pred HHHHHHHHhccCCCC
Q 018776 303 IAMGITLKLLPADDK 317 (350)
Q Consensus 303 vl~Gv~ly~~~k~~~ 317 (350)
++.+..+|...|+|.
T Consensus 450 ~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 450 AALPFIIYALHDKKG 464 (507)
T ss_pred HHHHHHHHHHhcccc
Confidence 335556665555443
No 129
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=50.45 E-value=2.1e+02 Score=26.44 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=15.8
Q ss_pred hhhhhhhccccchhhhhhhh
Q 018776 327 FKVNIRKLSFSEREEADEEK 346 (350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~ 346 (350)
.+|+.|++-.+|.||||-++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~ 265 (265)
T TIGR00822 246 RAQAAPSPAASKNELDDYDD 265 (265)
T ss_pred cccCCCCCCCCccccccccC
Confidence 35778899999999998653
No 130
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=49.66 E-value=7.2 Score=37.59 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCcchhhhhhHHHHHHHHHHHhccCCCCccccccccchhhhhhhccccchhhhhhhhcC
Q 018776 290 KPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRA 348 (350)
Q Consensus 290 e~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (350)
.|+=+.+++|+++++. + -+.+. +||+||-.... ...+.+|..+-.+||+|+-+||
T Consensus 176 ~pliP~~i~Gl~~vl~-l-A~~lG-~kErkRlg~~~-~~~~~~~~~~~~~~~~~~~~rp 230 (433)
T COG2851 176 VPLIPIQIIGLVLVLA-L-AWLLG-KKERKRLGVID-LSEELEQLVELSEEDQEELKRP 230 (433)
T ss_pred hhhhHHHHHHHHHHHH-H-HHHhh-HHHHHHhhhcc-CchhhhhccccCCchhhhhhcc
Confidence 4667889999998887 2 22222 22322222111 1112566666666666667776
No 131
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.48 E-value=11 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhccCCCCc
Q 018776 299 GLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 299 G~~lvl~Gv~ly~~~k~~~~ 318 (350)
-+.+++.|+.++.+.+++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHcccchh
Confidence 34567789999998776544
No 132
>PRK02237 hypothetical protein; Provisional
Probab=46.66 E-value=36 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=28.5
Q ss_pred HHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 125 MVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 125 ~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
.+-.+.+ -++|+++.++++..++++|+.++.+.+
T Consensus 74 l~W~w~v--dg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 74 LLWLWVV--DGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHh--cCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4566777 689999999999999999999886543
No 133
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=46.35 E-value=15 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHhccCCCCcccc
Q 018776 298 TGLLLIAMGITLKLLPADDKPIKR 321 (350)
Q Consensus 298 iG~~lvl~Gv~ly~~~k~~~~~~~ 321 (350)
+-+.++++|+.+|.+.++++++-+
T Consensus 17 ~~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 17 LYLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHH
Confidence 335788999999999987665433
No 134
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=45.54 E-value=1.5e+02 Score=23.33 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 268 TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 268 t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
..+..+-+--+.+++.++..-|++++..-++|..+++.|+.+-.+.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 35556666778899999999999999999999999999998876654
No 135
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=43.47 E-value=37 Score=26.68 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHhhccCccccChhhHHHHHHHHHHHHHHhcc
Q 018776 124 VMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 159 (350)
Q Consensus 124 v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~ 159 (350)
..+-.+.+ -++|+++.++++..++++|+.++.+.
T Consensus 71 Sl~W~w~v--dg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 71 SLLWGWLV--DGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHHhhh--cCcCCChHHHHhHHHHHHhHHheEec
Confidence 34566777 68999999999999999999988764
No 136
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.39 E-value=84 Score=24.30 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 018776 280 TLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 310 (350)
Q Consensus 280 ~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly 310 (350)
-+.+|++.++||+.+.++.|..++.+|+..-
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999988653
No 137
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=38.90 E-value=12 Score=21.87 Aligned_cols=12 Identities=50% Similarity=0.515 Sum_probs=7.3
Q ss_pred ccchhhhhhhhc
Q 018776 336 FSEREEADEEKR 347 (350)
Q Consensus 336 ~~~~~~~~~~~~ 347 (350)
++++||||+|..
T Consensus 3 GSddEeed~ea~ 14 (28)
T PF10587_consen 3 GSDDEEEDEEAE 14 (28)
T ss_pred CCccccccHHHH
Confidence 355666777753
No 138
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=37.89 E-value=4.2e+02 Score=26.34 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=40.6
Q ss_pred ccccChhhH--HHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Q 018776 135 RRKYPAHEY--VSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMN 196 (350)
Q Consensus 135 ~~r~~~~~~--~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~ 196 (350)
|+|+++.|| +|+.+++.=+.+.+..|. .-++...++.|+.|-++.+.|...+++..
T Consensus 320 ~~~iHpiQY~LVGlAl~lFYlLLLSlSEh------i~F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 320 KLRIHPIQYLLVGLALVLFYLLLLSLSEH------IGFNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999997 455556666666676653 34566777888888888888888887754
No 139
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.68 E-value=40 Score=24.05 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHhccCCCC
Q 018776 295 QHGTGLLLIAMGITLKLLPADDK 317 (350)
Q Consensus 295 ~~~iG~~lvl~Gv~ly~~~k~~~ 317 (350)
.-.+++.+++.|..+|....+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34678899999999997765443
No 140
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=37.61 E-value=4.2e+02 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhc
Q 018776 244 VFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIF 288 (350)
Q Consensus 244 ~l~~~~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lf 288 (350)
.++++.+..+.+.+-...+++|...++..+..-....+.+++..+
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~ 344 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF 344 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888999999999999999887776666555443
No 141
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=37.48 E-value=4.5e+02 Score=26.55 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCcchhhhhhHHHHHHHHHHHhccCCCCcccccccc------chhhhhhhccccch
Q 018776 290 KPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATS------SFKVNIRKLSFSER 339 (350)
Q Consensus 290 e~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~------~~~~~~~~~~~~~~ 339 (350)
+.++....+|..+++.|+.+|-...+.++|++--++ -.-|++..+..+|.
T Consensus 416 ~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~~v~~~~ 471 (479)
T KOG1287|consen 416 SDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFNVVPDEK 471 (479)
T ss_pred ecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHHhcCccc
Confidence 444555899999999999999776654443332111 24456666666655
No 142
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.11 E-value=95 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhh
Q 018776 20 PKWQQFLICSSGFFFGYLVNGVCEEYV 46 (350)
Q Consensus 20 p~~~~l~~~~~gi~~~~~~~~~~~e~i 46 (350)
.+|.|+++.++||..+ +||+.++..
T Consensus 25 Er~~q~ilti~aiVg~--i~Gf~~Qql 49 (101)
T KOG4112|consen 25 ERFQQLILTIGAIVGF--IYGFAQQQL 49 (101)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4688999999999876 677777754
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=36.32 E-value=27 Score=29.04 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHhccCCCCcccccccc
Q 018776 297 GTGLLLIAMGITLKLLPADDKPIKRTATS 325 (350)
Q Consensus 297 ~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~ 325 (350)
+++.++.+..+++..+.|+|+.|.+++..
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCCCccc
Confidence 45556666777787777666555543333
No 144
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=21 Score=24.92 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHhccCCCCcccc
Q 018776 297 GTGLLLIAMGITLKLLPADDKPIKR 321 (350)
Q Consensus 297 ~iG~~lvl~Gv~ly~~~k~~~~~~~ 321 (350)
.+-+.+++.|+..+.+.+.++++..
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHH
Confidence 3445678888888888876655433
No 145
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=36.29 E-value=5e+02 Score=28.83 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCc-cccChhhHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHh
Q 018776 122 LPVMVMGAFIPGLR-RKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSF 184 (350)
Q Consensus 122 i~v~il~~l~~~l~-~r~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~ 184 (350)
+.++++-++| +| -|.+....+++-+.+++.+++.+--+-+-..-++.|++++++-.+=+|+
T Consensus 342 ~lv~~vl~lf--l~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaI 403 (1021)
T PF00873_consen 342 ILVVLVLLLF--LRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAI 403 (1021)
T ss_dssp HHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhh--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccce
Confidence 3444455555 54 3666666677777777766654432211112357777776654444443
No 146
>PF15345 TMEM51: Transmembrane protein 51
Probab=35.46 E-value=17 Score=32.51 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHhccCCCCccccc
Q 018776 297 GTGLLLIAMGITLKLLPADDKPIKRT 322 (350)
Q Consensus 297 ~iG~~lvl~Gv~ly~~~k~~~~~~~~ 322 (350)
..|+++.++.+++-...|+|++.+++
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45888899999999988877776666
No 147
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.06 E-value=16 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=8.6
Q ss_pred hccccchhhhhhh
Q 018776 333 KLSFSEREEADEE 345 (350)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (350)
.-+++|++.++||
T Consensus 51 EDSGnES~Gd~Ee 63 (81)
T PF00558_consen 51 EDSGNESDGDEEE 63 (81)
T ss_dssp TCCHCTTTTCCHH
T ss_pred ccCCCCCCCcHHH
Confidence 4566777766666
No 148
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=34.91 E-value=25 Score=27.34 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=6.1
Q ss_pred ccchhhhhhh
Q 018776 336 FSEREEADEE 345 (350)
Q Consensus 336 ~~~~~~~~~~ 345 (350)
.+++++.|||
T Consensus 94 ~~~~~~~Dee 103 (103)
T PF06422_consen 94 KKKKKKNDEE 103 (103)
T ss_pred hhhcccCCCC
Confidence 4455666776
No 149
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.92 E-value=33 Score=34.27 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=23.4
Q ss_pred cchhhhhhHHHHHHHHHHHhccCCCCccccc
Q 018776 292 LTEQHGTGLLLIAMGITLKLLPADDKPIKRT 322 (350)
Q Consensus 292 ~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~ 322 (350)
++..|++++.++++|+.+..+.++++++++.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~~~ 284 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREAPGA 284 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 7889999999999999887766554444333
No 150
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=33.75 E-value=55 Score=28.93 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHhcCCCcc-hhhhhhHH-HHHHHHH
Q 018776 264 FGAATTAMVTTARKAVTLLLSYLIFTKPLT-EQHGTGLL-LIAMGIT 308 (350)
Q Consensus 264 ~sa~t~sv~~~l~~v~~i~ls~~lfge~~t-~~~~iG~~-lvl~Gv~ 308 (350)
..+...+.+..+-+..+..+|..+-+--.. ..+|+|.+ +++.|+.
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 444555555556666666666555432212 34555543 3445543
No 151
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.36 E-value=3.4e+02 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=7.9
Q ss_pred CCChhHHHHHHHHHH
Q 018776 80 MMNPWKTYVKLSAVL 94 (350)
Q Consensus 80 ~~~~~~~~~~ls~~~ 94 (350)
.+.++++++.++...
T Consensus 142 ~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 142 KRPSWWKYILISVLA 156 (206)
T ss_pred cccHHHHHHHHHHHH
Confidence 345666665554443
No 152
>PRK09109 motC flagellar motor protein; Reviewed
Probab=32.24 E-value=55 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=24.2
Q ss_pred HHHHhHHHHHHHHHHHHhcC-CCcchhhhhhHHHHHHHHHHHhc
Q 018776 270 AMVTTARKAVTLLLSYLIFT-KPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 270 sv~~~l~~v~~i~ls~~lfg-e~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
+++|.+--+..++.|+++-| +.-...+.-++.++++|.+....
T Consensus 5 t~iG~~~~~~~v~~~~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~ 48 (246)
T PRK09109 5 SLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVL 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555555555665544 34445677777777766655443
No 153
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.91 E-value=35 Score=29.00 Aligned_cols=8 Identities=25% Similarity=0.406 Sum_probs=3.2
Q ss_pred ccchhhhh
Q 018776 336 FSEREEAD 343 (350)
Q Consensus 336 ~~~~~~~~ 343 (350)
+++|||||
T Consensus 145 ~~ddedeD 152 (163)
T PF06679_consen 145 EEDDEDED 152 (163)
T ss_pred CCCccccc
Confidence 33344444
No 154
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=31.85 E-value=4.2e+02 Score=24.49 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 018776 171 GVIMISGALIMDSFLGNLQEAI 192 (350)
Q Consensus 171 G~~~~l~s~~~~a~~~v~~~~l 192 (350)
+.+...+-.++..+...+++|.
T Consensus 103 A~a~q~l~~~~rt~~~~f~h~a 124 (265)
T COG3715 103 AVAGQFLTTFVRTITVGFVHRA 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555543
No 155
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=31.71 E-value=4.1e+02 Score=24.54 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=16.3
Q ss_pred cccChhhHHHHHHHHHHHHHHhccCC
Q 018776 136 RKYPAHEYVSALLLVVGLILFTLADA 161 (350)
Q Consensus 136 ~r~~~~~~~~v~l~~~Gv~l~~~~~~ 161 (350)
...+..+.++.+.--.|.+++...++
T Consensus 58 ~~~~~~~lvg~~~F~~GLilVv~~g~ 83 (265)
T COG2116 58 APGGLAKLVGGLVFSLGLILVVIAGS 83 (265)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhCc
Confidence 33445666666667777777766554
No 156
>PRK02237 hypothetical protein; Provisional
Probab=31.46 E-value=2.6e+02 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 268 TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 268 t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
..+..+-+--+.+++.++..-|++++..-++|.++++.|+.+-.+..
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 45566667778888999999999999999999999999998876654
No 157
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=30.91 E-value=38 Score=33.66 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccccccccchh
Q 018776 249 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFK 328 (350)
Q Consensus 249 ~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~~~~ 328 (350)
.++.+-++-+......+++-.++.....+++-- -+--+-..+++..++..+++.=+.++.-.|--+.|--...+.+.
T Consensus 173 AgvsgGfsanl~~~~~D~Ll~GfTq~AA~iidp---~~~vnp~~NwyF~~as~~vl~~i~~fvTdKivEPRLg~~~~~~~ 249 (516)
T COG2978 173 AGVSGGFSANLLPGTIDPLLAGFTQPAAQIIDP---SYQVNPLMNWYFIAASVFVLTLIGWFVTDKIIEPRLGPYQGLSS 249 (516)
T ss_pred hhcccccccccccCcchHHHHHhhHHHHHhcCC---ccccCcchhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcch
Confidence 333344555556666777666555544333321 11123345677777778877777777777766665333222222
Q ss_pred hhhhhccccchhhhhhhhcCC
Q 018776 329 VNIRKLSFSEREEADEEKRAP 349 (350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ 349 (350)
++ ++.-+..+|.-|+|||++
T Consensus 250 ~~-~~~~~~~~~~t~~Ekkgl 269 (516)
T COG2978 250 EA-EDDENASQELTALEKKGL 269 (516)
T ss_pred hh-hhhhhhhhhcCHHHhccc
Confidence 22 333334456667888875
No 158
>PRK11469 hypothetical protein; Provisional
Probab=30.83 E-value=55 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHH
Q 018776 266 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL 302 (350)
Q Consensus 266 a~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~l 302 (350)
+...+.+..+-|..+..+|..+-+-.....+|+|..+
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~l 76 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVL 76 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666655443333456777664
No 159
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.52 E-value=50 Score=22.21 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=7.3
Q ss_pred HHHHHHHHHhccCC
Q 018776 302 LIAMGITLKLLPAD 315 (350)
Q Consensus 302 lvl~Gv~ly~~~k~ 315 (350)
+++.|+.+-+..|.
T Consensus 13 ~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 13 MGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHhhc
Confidence 34455555555553
No 160
>PF14002 YniB: YniB-like protein
Probab=30.30 E-value=1.8e+02 Score=24.63 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHHhccCCCCccccccc-c-chhhhhhhccccc-hhhhhhhhcC
Q 018776 295 QHGTGLLLIAMGITLKLLPADDKPIKRTAT-S-SFKVNIRKLSFSE-REEADEEKRA 348 (350)
Q Consensus 295 ~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~ 348 (350)
..|+=..+++.|..+..-..+..++-|..+ + -+|.=+||.-++| +..|+.|+|-
T Consensus 76 ~F~vIy~liFvGlAL~aSG~rm~rqvk~ire~IEdqlIlE~akG~~g~treqlE~~i 132 (166)
T PF14002_consen 76 MFWVIYLLIFVGLALQASGARMSRQVKFIREGIEDQLILEQAKGSEGRTREQLEERI 132 (166)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHhcCCccccHHHHHhcc
Confidence 345556677777777644333222222222 2 4455578877666 6666666663
No 161
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.06 E-value=1.6e+02 Score=23.32 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 018776 279 VTLLLSYL 286 (350)
Q Consensus 279 ~~i~ls~~ 286 (350)
+...+||+
T Consensus 58 VGa~iG~l 65 (116)
T COG5336 58 VGAGIGWL 65 (116)
T ss_pred HHHHHHHH
Confidence 33444443
No 162
>PRK11715 inner membrane protein; Provisional
Probab=29.01 E-value=5.9e+02 Score=25.37 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=40.8
Q ss_pred ccccChhhH--HHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Q 018776 135 RRKYPAHEY--VSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMN 196 (350)
Q Consensus 135 ~~r~~~~~~--~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~ 196 (350)
+.|.++.|| +|+.+++.=+.+.+..|. .-++..+++.|+.|-++.+.|...+++..
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlSEH------igF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLSEH------IGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999997 455556666666676653 34677777888888888888888777754
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.83 E-value=19 Score=29.12 Aligned_cols=8 Identities=0% Similarity=-0.342 Sum_probs=0.0
Q ss_pred hhhhhhhc
Q 018776 327 FKVNIRKL 334 (350)
Q Consensus 327 ~~~~~~~~ 334 (350)
+.++.|.+
T Consensus 98 ~~~p~P~~ 105 (122)
T PF01102_consen 98 DVQPLPEE 105 (122)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 33334433
No 164
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=28.63 E-value=39 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.6
Q ss_pred CcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 291 PLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 291 ~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.+++.+++|++++++|..+|...+.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46789999999999999999765443
No 165
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=28.45 E-value=1.9e+02 Score=19.62 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018776 142 EYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFT 194 (350)
Q Consensus 142 ~~~~v~l~~~Gv~l~~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~ 194 (350)
..++.+++++|+++....++ |.+.+++....-|......++..+
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp---------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP---------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC---------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45788889999998877652 666666666665555555555544
No 166
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=28.42 E-value=26 Score=31.02 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHhccCC-C-Cccccccccchhhhh---hhccccchhhhhhh
Q 018776 294 EQHGTGLLLIAMGITLKLLPAD-D-KPIKRTATSSFKVNI---RKLSFSEREEADEE 345 (350)
Q Consensus 294 ~~~~iG~~lvl~Gv~ly~~~k~-~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 345 (350)
..+-.|+...-.+|+.-+...+ | +...++.....+||= +--.+.++||||+|
T Consensus 200 lA~~lgmteSqvkVWFQNRRTKWRKkhAaEmasakkkqds~ae~~~gg~~~eeeDDe 256 (288)
T KOG0847|consen 200 LAQELNMTESQVKVWFQNRRTKWRKKHAAEMASAKKKQDSGAERGAGGAPSEEEDDE 256 (288)
T ss_pred hhccccccHHHHHHHHhcchhhhhhhhccchhhccccCCCcccccccCCCccccccc
Confidence 3455677777777776654432 2 222345555556652 22344566777666
No 167
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=27.57 E-value=35 Score=26.97 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.7
Q ss_pred cchhhhhhh
Q 018776 337 SEREEADEE 345 (350)
Q Consensus 337 ~~~~~~~~~ 345 (350)
++|+||||+
T Consensus 139 ~~dd~e~ed 147 (150)
T PF06084_consen 139 GTDDEEDED 147 (150)
T ss_pred CCCcccccc
Confidence 344444443
No 168
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=26.07 E-value=2.2e+02 Score=26.97 Aligned_cols=10 Identities=10% Similarity=0.146 Sum_probs=4.3
Q ss_pred hhhhhhhhcC
Q 018776 339 REEADEEKRA 348 (350)
Q Consensus 339 ~~~~~~~~~~ 348 (350)
++|+||.|+|
T Consensus 198 ~~e~ywKrkp 207 (384)
T COG5505 198 SAESYWKRKP 207 (384)
T ss_pred hhhhhhhcCC
Confidence 3444444434
No 169
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.05 E-value=52 Score=24.60 Aligned_cols=57 Identities=11% Similarity=-0.039 Sum_probs=28.8
Q ss_pred HHHhcCCCcchhhhhhHHHHHHHHHHHhccCCCCccccccccchhhh---hhhccccchh
Q 018776 284 SYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVN---IRKLSFSERE 340 (350)
Q Consensus 284 s~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~ 340 (350)
|++...-......+..+.+.+.-....++.|.++.+.+.++-+.+++ -||.++.-++
T Consensus 34 gi~~lPVD~w~KGy~~MG~lfltgSt~tL~K~~rD~he~~rl~ari~~Ar~EkllS~y~g 93 (95)
T COG4298 34 GIWLLPVDLWTKGYWAMGILFLTGSTVTLVKYRRDEHESARLSARIEKARNEKLLSEYVG 93 (95)
T ss_pred HhheechHHHHHHHHHHHHHHHhcchhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444333333444444444444445567777776666555444443 5565554433
No 170
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=25.72 E-value=20 Score=32.87 Aligned_cols=68 Identities=9% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCCC
Q 018776 249 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 249 ~~~l~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.-+=+|++...+-++++-+.......-......++|+++++.+--+.++.|.++++.|+.+.....-.
T Consensus 87 ~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 87 VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 33456777777888888888888888888889999999999999999999999999999887665433
No 171
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=25.72 E-value=51 Score=32.39 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=15.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 018776 18 DRPKWQQFLICSSGFFFGYLVNG 40 (350)
Q Consensus 18 ~~p~~~~l~~~~~gi~~~~~~~~ 40 (350)
.+|+..|+..|++.||.+|+..|
T Consensus 410 alPkVlRFc~ca~mIYlGy~FCG 432 (566)
T KOG3733|consen 410 ALPKVLRFCCCAAMIYLGYCFCG 432 (566)
T ss_pred hhHHHHHHHHHHHHHHHHHhhee
Confidence 45666666666666666666555
No 172
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=25.71 E-value=71 Score=31.69 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=18.6
Q ss_pred CCcchhhhhhHHHHHHHHHHHhccC
Q 018776 290 KPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 290 e~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
..-++..++|.++.+..+...+...
T Consensus 281 ~~~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 281 SWNTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccc
Confidence 3456778899999988887766554
No 173
>PHA03049 IMV membrane protein; Provisional
Probab=25.42 E-value=74 Score=22.61 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHhccCCC
Q 018776 296 HGTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 296 ~~iG~~lvl~Gv~ly~~~k~~ 316 (350)
-.+++.+++.|..+|....++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 457888999999999776543
No 174
>PRK11246 hypothetical protein; Provisional
Probab=24.94 E-value=62 Score=28.85 Aligned_cols=6 Identities=0% Similarity=-0.197 Sum_probs=2.3
Q ss_pred hhhhhh
Q 018776 328 KVNIRK 333 (350)
Q Consensus 328 ~~~~~~ 333 (350)
..|-|+
T Consensus 199 ~~~~~~ 204 (218)
T PRK11246 199 TASKPV 204 (218)
T ss_pred ccCCCC
Confidence 333333
No 175
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.87 E-value=69 Score=20.84 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=4.3
Q ss_pred HHHHHHhcc
Q 018776 305 MGITLKLLP 313 (350)
Q Consensus 305 ~Gv~ly~~~ 313 (350)
.|..+|.-.
T Consensus 21 iGl~IyQki 29 (49)
T PF11044_consen 21 IGLSIYQKI 29 (49)
T ss_pred HHHHHHHHH
Confidence 444555433
No 176
>COG3162 Predicted membrane protein [Function unknown]
Probab=24.82 E-value=2.4e+02 Score=21.89 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccC----CCChhhHHHHHHHHHHHHH
Q 018776 26 LICSSGFFFGYLVNGVCEEYVYNRL----QFSYGWYFTFIQGFVYLVL 69 (350)
Q Consensus 26 ~~~~~gi~~~~~~~~~~~e~i~~~~----~f~~p~~lt~~q~~~~~~~ 69 (350)
.+....+|++|..-..++.-.+... ..+.++.+.+.|++.+.++
T Consensus 30 tl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVl 77 (102)
T COG3162 30 TLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVL 77 (102)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHH
Confidence 3456677777776666665322221 2345666667776665443
No 177
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=24.43 E-value=6.7e+02 Score=24.49 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHH
Q 018776 22 WQQFLICSSGFFFG 35 (350)
Q Consensus 22 ~~~l~~~~~gi~~~ 35 (350)
|..+..+..++...
T Consensus 18 w~i~~~~~~~~~~~ 31 (455)
T TIGR00892 18 WVVLGATFVSIGFS 31 (455)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554433
No 178
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=24.02 E-value=6.8e+02 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHhccCCCCc
Q 018776 298 TGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 298 iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
.|+.+.+.|+.+|-+.++|++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 588888999999987766543
No 179
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=23.79 E-value=5.9e+02 Score=24.25 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=41.8
Q ss_pred hhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChh--hHHHHHHHHHHHHHHhc
Q 018776 96 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAH--EYVSALLLVVGLILFTL 158 (350)
Q Consensus 96 ~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~--~~~~v~l~~~Gv~l~~~ 158 (350)
.+.....-.+.+.+...++--+-+.+++=.++|..++ .++-..+ .+++..+.++|++....
T Consensus 158 ~~l~~~~~~~~~~~~~l~~~~~~f~yi~Y~ilG~~l~--~~~~~~~~~~~~a~~l~~~~~~~t~v 220 (332)
T COG3274 158 STLPFLYGGFSWLPIDLYIYGDTFYYILYYILGRYLG--TRQTQGKKISRLALALFVLGVIFTFV 220 (332)
T ss_pred ccchhhhcccccCCcchhhhCCchHHHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777888777888888888888872 3333333 57778888888876543
No 180
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=23.71 E-value=2e+02 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHHH
Q 018776 294 EQHGTGLLLIAMGITLK 310 (350)
Q Consensus 294 ~~~~iG~~lvl~Gv~ly 310 (350)
..|.+|..+.+.=..+|
T Consensus 188 ipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 188 IPNVLGFLLGLIQLILY 204 (243)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 56778998888888888
No 181
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.55 E-value=3e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=-0.230 Sum_probs=18.0
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCCcc
Q 018776 294 EQHGTGLLLIAMGITLKLLPADDKPI 319 (350)
Q Consensus 294 ~~~~iG~~lvl~Gv~ly~~~k~~~~~ 319 (350)
..-|.|.+--+.+..++....+|.+|
T Consensus 62 ~~~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 62 LMAWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 34578888888888887766555443
No 182
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.99 E-value=51 Score=27.66 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=9.8
Q ss_pred hhhccccchhhhhhhhcC
Q 018776 331 IRKLSFSEREEADEEKRA 348 (350)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (350)
|.+..+++-+++.|-+.|
T Consensus 102 w~~l~Gk~~~~~y~s~sp 119 (154)
T PF04478_consen 102 WYSLLGKKISDKYESNSP 119 (154)
T ss_pred HHHHhCCccccccccCCC
Confidence 666666665444444444
No 183
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.49 E-value=27 Score=32.33 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHhH----HHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccCC
Q 018776 251 FIGQVSVLSLIALFGAATTAMVTTA----RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 251 ~l~~~~~~~~i~~~sa~t~sv~~~l----~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+++.++|.+++++++|+.-++.... -.++-+++++++-..-+|...=+=-.+.+.++.+..|...
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~ 187 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHD 187 (381)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555666678889998776654432 1222333344443444444332333456667666666543
No 184
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.44 E-value=61 Score=29.90 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.2
Q ss_pred cchhhhhhHHHHHHHHHHHhccC
Q 018776 292 LTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 292 ~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+|..|++++.+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999988765443
No 185
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=22.43 E-value=4.4e+02 Score=22.31 Aligned_cols=47 Identities=6% Similarity=0.008 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhCCCCChHhHHHHHHHhHHH
Q 018776 168 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLP 214 (350)
Q Consensus 168 ~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (350)
...|-.+.+.|-+.++......-.+++++.....+.++||.-..+..
T Consensus 120 WamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCeFtAsF 166 (184)
T PF15108_consen 120 WAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCEFTASF 166 (184)
T ss_pred hhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 45566666666555443222222344443323456778877665443
No 186
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=22.25 E-value=1.7e+02 Score=23.81 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChhhHHHHHHHHHH
Q 018776 22 WQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVY 66 (350)
Q Consensus 22 ~~~l~~~~~gi~~~~~~~~~~~e~i~~~~~f~~p~~lt~~q~~~~ 66 (350)
-.+++++.....++...+.++.++.+...+ +||+|++-+....+
T Consensus 55 ~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~-NY~fFL~QlTt~gy 98 (130)
T PF08627_consen 55 NFKLLVYVVVYVVSGVINRVLYKKMTNPMK-NYPFFLNQLTTFGY 98 (130)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHhcccce
Confidence 345777888888888888888888865443 68888876554433
No 187
>KOG4639 consensus RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=32 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.0
Q ss_pred ccchhhhhhhccccchhhhhhhh
Q 018776 324 TSSFKVNIRKLSFSEREEADEEK 346 (350)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (350)
....+..-++|.+-|+|+||||+
T Consensus 132 ~~~~~~v~~~~~~~e~e~s~e~~ 154 (154)
T KOG4639|consen 132 DQLFEAVHQICGQREREFSDEQR 154 (154)
T ss_pred hhHHHHHHHHhcchhhhccccCC
Confidence 33555667899999999999984
No 188
>PRK08456 flagellar motor protein MotA; Validated
Probab=21.53 E-value=1.2e+02 Score=27.84 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHhHHHHHHHHHHHHhcC-CCcchhhhhhHHHHHHHHHHHhc
Q 018776 270 AMVTTARKAVTLLLSYLIFT-KPLTEQHGTGLLLIAMGITLKLL 312 (350)
Q Consensus 270 sv~~~l~~v~~i~ls~~lfg-e~~t~~~~iG~~lvl~Gv~ly~~ 312 (350)
+++|.+--+..++.|+++=| +.....+.-+++++++|.+-...
T Consensus 5 tiiG~~~~~~~i~~~~~~~gg~~~~~~~~~~~~IV~Ggt~~a~~ 48 (257)
T PRK08456 5 TILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAM 48 (257)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHhhHhHHHHHHHHHHHHHH
Confidence 34444444455555555533 34445666666666666654433
No 189
>COG1971 Predicted membrane protein [Function unknown]
Probab=21.50 E-value=1.3e+02 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHH-HHHHH
Q 018776 268 TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL-IAMGI 307 (350)
Q Consensus 268 t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~l-vl~Gv 307 (350)
+.+++..+.|++....+.++=+..-.+.+|+|.++ .+.|.
T Consensus 42 ~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 42 IFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666655544556778777655 44554
No 190
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=21.37 E-value=4.6e+02 Score=21.50 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHH-HHHHHHHHhccCCCC
Q 018776 253 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLL-IAMGITLKLLPADDK 317 (350)
Q Consensus 253 ~~~~~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~l-vl~Gv~ly~~~k~~~ 317 (350)
=+..-.+..|++|+.+.++.+.. ...+.+.+++. + +|+.+ -+.|.++..+.+.|+
T Consensus 47 d~~~~~~~ak~~G~s~~~~~ga~---iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~~~ 102 (140)
T PF04306_consen 47 DYLAGAYGAKRFGASRWGIWGAI---IGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRGKD 102 (140)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH---HHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhCCC
Confidence 34556788999999999988765 66666766654 2 25444 677888887755443
No 191
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=21.34 E-value=1.5e+02 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCCc
Q 018776 294 EQHGTGLLLIAMGITLKLLPADDKP 318 (350)
Q Consensus 294 ~~~~iG~~lvl~Gv~ly~~~k~~~~ 318 (350)
....-|++-+++|++++-+.|.+++
T Consensus 187 ~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 187 AFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3455677888888888888776654
No 192
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=21.17 E-value=5.8e+02 Score=23.90 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 018776 268 TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 310 (350)
Q Consensus 268 t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly 310 (350)
...++...-.+...+..+.++|.+++...++|+..+ .|..++
T Consensus 153 l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtl-iG~svn 194 (297)
T PRK13021 153 SGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAI-LGYSLN 194 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHeee
Confidence 344556666778888888899999998888887554 555544
No 193
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=20.48 E-value=6.5e+02 Score=22.87 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=21.1
Q ss_pred HHHHHHhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchh
Q 018776 257 VLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ 295 (350)
Q Consensus 257 ~~~~i~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~ 295 (350)
...+-++-++......+.++-.+-++...+++.-.-...
T Consensus 112 f~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~ 150 (249)
T PF10225_consen 112 FAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPE 150 (249)
T ss_pred HHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 334444555555666666666666666666654433333
No 194
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=20.44 E-value=71 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHhcCCCcchh-hhhhHHHHHHHHHHHhccCC
Q 018776 285 YLIFTKPLTEQ-HGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 285 ~~lfge~~t~~-~~iG~~lvl~Gv~ly~~~k~ 315 (350)
+-+||..+..- -.+|.+-..+|+..+...+.
T Consensus 5 Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g~ 36 (71)
T PF11022_consen 5 YTIFGRQVQSHYLAIATLGTVFGGVYLATSGS 36 (71)
T ss_pred eeecccccccchhHHHHHHHHHHHheeccCCC
Confidence 34566655443 33455555555555444433
No 195
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.30 E-value=86 Score=30.01 Aligned_cols=41 Identities=24% Similarity=0.082 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhccCCCCccccccccchhhhhhhccccc
Q 018776 298 TGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSE 338 (350)
Q Consensus 298 iG~~lvl~Gv~ly~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 338 (350)
+|.+=.|-=.+-|.+.+.-++.++....+-++..||.+++|
T Consensus 266 vGfleSF~PLy~~~~~~~~~~~aK~~k~skk~~k~k~~~~e 306 (372)
T KOG2927|consen 266 VGFLESFKPLYEYHYKKDPKKTAKLDKKSKKKKKRKSSPEE 306 (372)
T ss_pred hhHHHhhcccccccCCCCcchhhHHHHHHHHHHhhhcChhh
Confidence 44444444434444443222333444445555667776666
Done!