Query 018776
Match_columns 350
No_of_seqs 222 out of 1983
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 1E-07 3.4E-12 77.8 7.1 70 245-314 35-105 (137)
2 3b5d_A Multidrug transporter E 98.2 1E-05 3.5E-10 63.3 9.9 69 246-314 36-105 (110)
3 3b5d_A Multidrug transporter E 98.1 1.4E-05 4.8E-10 62.6 8.7 68 91-160 37-105 (110)
4 2i68_A Protein EMRE; transmemb 97.9 1.3E-05 4.4E-10 65.2 4.9 67 92-160 38-105 (137)
5 3rko_J NADH-quinone oxidoreduc 59.7 71 0.0024 26.5 9.7 33 282-314 128-160 (184)
6 2l2t_A Receptor tyrosine-prote 38.2 27 0.00094 21.8 2.8 17 301-317 24-40 (44)
7 3l1l_A Arginine/agmatine antip 37.0 1.5E+02 0.0051 27.3 9.4 25 295-319 409-433 (445)
8 4djk_A Probable glutamate/gamm 33.2 39 0.0013 32.2 4.6 20 297-316 449-468 (511)
9 2ks1_B Epidermal growth factor 33.0 36 0.0012 21.3 2.8 11 303-313 27-37 (44)
10 3d9s_A Aquaporin-5, AQP-5; aqu 30.9 31 0.001 30.6 3.1 22 294-315 205-227 (266)
11 2b6o_A Aquaporin-0, lens fiber 27.4 34 0.0012 30.2 2.7 22 294-315 202-224 (263)
12 2jo1_A Phospholemman; FXYD1, N 20.9 21 0.00071 24.7 0.0 9 301-309 26-34 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.58 E-value=1e-07 Score=77.81 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHH-HhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 245 FEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 245 l~~~~~~l~~~~~~~~i~~~sa~t~sv~-~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
++.+++.++++++..++++.++.++..+ ..+.|+++.++|+++|||++|+.+++|+++++.|+.+.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4456677888999999999999988777 899999999999999999999999999999999999987653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.19 E-value=1e-05 Score=63.34 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHH-HhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 246 EAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 246 ~~~~~~l~~~~~~~~i~~~sa~t~sv~-~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
+.++..++++++..++++.+..++..+ ..+.++.+.++|+++|||++|+.+++|+++++.|+.+....+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344556778888899999999998777 899999999999999999999999999999999999987653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.08 E-value=1.4e-05 Score=62.56 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHhhHHHHHhhhhcCchhHHHHH-hhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 91 SAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 91 s~~~~~~~~l~~~al~~~s~~~~~v~-ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
.+++..+..+...+++++|.+..-.+ .+..|+.+.++++++ ++|++++.+++++.++++|+.+....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34577888899999999999987655 899999999999999 999999999999999999999987754
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.86 E-value=1.3e-05 Score=65.21 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHhhHHHHHhhhhcCchhHHHHH-hhcchHHHHHHHHhhccCccccChhhHHHHHHHHHHHHHHhccC
Q 018776 92 AVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (350)
Q Consensus 92 ~~~~~~~~l~~~al~~~s~~~~~v~-ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l~~~Gv~l~~~~~ 160 (350)
+++.++..+.+.+++++|.+....+ .+..|++++++++++ ++|++++.++++++++++|+.+....+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4577888999999999999966555 899999999999999 999999999999999999999987654
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=59.66 E-value=71 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=23.2
Q ss_pred HHHHHhcCCCcchhhhhhHHHHHHHHHHHhccC
Q 018776 282 LLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 314 (350)
Q Consensus 282 ~ls~~lfge~~t~~~~iG~~lvl~Gv~ly~~~k 314 (350)
-+|..+|++-+=+...+|+.+..+=+.-....|
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999888999999988544333333444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=38.23 E-value=27 Score=21.85 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhccCCCC
Q 018776 301 LLIAMGITLKLLPADDK 317 (350)
Q Consensus 301 ~lvl~Gv~ly~~~k~~~ 317 (350)
+++..++++|...++++
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34444444444444333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=37.01 E-value=1.5e+02 Score=27.27 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHhccCCCCcc
Q 018776 295 QHGTGLLLIAMGITLKLLPADDKPI 319 (350)
Q Consensus 295 ~~~iG~~lvl~Gv~ly~~~k~~~~~ 319 (350)
..+.|..+++.|+.+|.+.++|+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4556888899999999887665543
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=33.22 E-value=39 Score=32.18 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHhccCCC
Q 018776 297 GTGLLLIAMGITLKLLPADD 316 (350)
Q Consensus 297 ~iG~~lvl~Gv~ly~~~k~~ 316 (350)
.++..+++.++.++.+.+++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555544433
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.97 E-value=36 Score=21.26 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.2
Q ss_pred HHHHHHHHhcc
Q 018776 303 IAMGITLKLLP 313 (350)
Q Consensus 303 vl~Gv~ly~~~ 313 (350)
+..++++|...
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333444333
No 10
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=30.90 E-value=31 Score=30.56 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=12.0
Q ss_pred hhhhhhHHH-HHHHHHHHhccCC
Q 018776 294 EQHGTGLLL-IAMGITLKLLPAD 315 (350)
Q Consensus 294 ~~~~iG~~l-vl~Gv~ly~~~k~ 315 (350)
+..|+|=.+ .+.|.++|.+...
T Consensus 205 Wvy~vgP~~Ga~la~~~y~~l~~ 227 (266)
T 3d9s_A 205 WVFWVGPIVGAVLAAILYFYLLF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeeehHHHHHHHHHHHHHHHHhC
Confidence 445555444 4456667765543
No 11
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=27.36 E-value=34 Score=30.20 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=12.7
Q ss_pred hhhhhhHHH-HHHHHHHHhccCC
Q 018776 294 EQHGTGLLL-IAMGITLKLLPAD 315 (350)
Q Consensus 294 ~~~~iG~~l-vl~Gv~ly~~~k~ 315 (350)
+..|+|=.+ .+.|..+|.+...
T Consensus 202 Wvy~vgP~~Ga~la~~~y~~l~~ 224 (263)
T 2b6o_A 202 WVYWVGPVIGAGLGSLLYDFLLF 224 (263)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTS
T ss_pred eHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666554 4556667766543
No 12
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.88 E-value=21 Score=24.70 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 018776 301 LLIAMGITL 309 (350)
Q Consensus 301 ~lvl~Gv~l 309 (350)
++.+.|+++
T Consensus 26 vLfi~GI~i 34 (72)
T 2jo1_A 26 ILFILGILI 34 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
Done!