Query 018776
Match_columns 350
No_of_seqs 222 out of 1983
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 05:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018776.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018776hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 26.5 14 0.001 21.8 1.6 27 285-311 5-31 (45)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 25.7 1.7E+02 0.012 24.0 18.1 20 296-315 187-206 (447)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 23.1 1.3E+02 0.0097 24.0 7.8 57 86-148 4-60 (248)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 14.9 56 0.0041 25.2 3.4 49 262-310 61-109 (199)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 11.5 44 0.0032 22.4 1.5 25 298-322 26-50 (91)
6 d1iwga8 f.35.1.1 (A:513-566,A: 10.3 2.7E+02 0.02 21.2 6.5 31 279-309 96-126 (222)
7 d2jdih1 a.2.10.1 (H:102-145) E 7.8 23 0.0017 20.1 -1.0 25 324-348 4-28 (44)
8 d1deca_ g.3.15.2 (A:) Decorsin 7.5 37 0.0027 18.3 -0.2 13 329-341 10-22 (39)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 7.3 80 0.0059 21.3 1.5 22 298-319 37-58 (100)
10 d1ss4a_ d.32.1.6 (A:) Hypothet 5.1 1.3E+02 0.0093 20.7 1.7 26 1-26 2-27 (149)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=26.49 E-value=14 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHhcCCCcchhhhhhHHHHHHHHHHHh
Q 018776 285 YLIFTKPLTEQHGTGLLLIAMGITLKL 311 (350)
Q Consensus 285 ~~lfge~~t~~~~iG~~lvl~Gv~ly~ 311 (350)
+-++....-+...+|+...+++.+++-
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 345566667777888888777777654
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=25.67 E-value=1.7e+02 Score=23.95 Aligned_cols=20 Identities=10% Similarity=-0.023 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHhccCC
Q 018776 296 HGTGLLLIAMGITLKLLPAD 315 (350)
Q Consensus 296 ~~iG~~lvl~Gv~ly~~~k~ 315 (350)
...+....+.++..+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhHHHHHHHHHHhccc
Confidence 34455555556665555443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=23.06 E-value=1.3e+02 Score=23.98 Aligned_cols=57 Identities=16% Similarity=-0.035 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhHHHHHhhhhcCchhHHHHHhhcchHHHHHHHHhhccCccccChhhHHHHHH
Q 018776 86 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALL 148 (350)
Q Consensus 86 ~~~~ls~~~~~~~~l~~~al~~~s~~~~~v~ks~~pi~v~il~~l~~~l~~r~~~~~~~~v~l 148 (350)
+|.+++++.+...+.....+..=+.....++ .+.+.++.+++ +.||.-+.+|+.=.+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy--~s~r~~p~kyi~PG~ 60 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIF--ANRKAYAWRYVYPGM 60 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHH--SSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEE--EccCccceehhhhHH
Confidence 4667777776666665555555555444432 45566777788 777877777764333
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.87 E-value=56 Score=25.15 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=32.0
Q ss_pred HhhcHHHHHHHHhHHHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 018776 262 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 310 (350)
Q Consensus 262 ~~~sa~t~sv~~~l~~v~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~ly 310 (350)
+..-+.....+...-.+........++|.+++.....+..+.++...-|
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3344444444444445566666677889999988888888777766544
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.46 E-value=44 Score=22.40 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhccCCCCccccc
Q 018776 298 TGLLLIAMGITLKLLPADDKPIKRT 322 (350)
Q Consensus 298 iG~~lvl~Gv~ly~~~k~~~~~~~~ 322 (350)
+.+.+...|.++|...|+|+++.+.
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHHhhheeeeccCCcc
Confidence 3345567788888888887665443
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.30 E-value=2.7e+02 Score=21.19 Aligned_cols=31 Identities=16% Similarity=-0.061 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 018776 279 VTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 309 (350)
Q Consensus 279 ~~i~ls~~lfge~~t~~~~iG~~lvl~Gv~l 309 (350)
...+.+..+.|.+++....+|.++.++...-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~ 126 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSAK 126 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhhh
Confidence 4556677788999999998888886555433
No 7
>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.85 E-value=23 Score=20.05 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=15.4
Q ss_pred ccchhhhhhhccccchhhhhhhhcC
Q 018776 324 TSSFKVNIRKLSFSEREEADEEKRA 348 (350)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (350)
....|.|++|--+.-.+-+||-.|+
T Consensus 4 ~~aak~nlekaqsel~~asdeaara 28 (44)
T d2jdih1 4 LGAAKANLEKAQSELLGAADEATRA 28 (44)
T ss_dssp CSHHHHHHHHHHHHSSSCCCSSSSH
T ss_pred HHHHHhhHHHHHHHHhccchHHhhh
Confidence 3456777887666555566665554
No 8
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=7.53 E-value=37 Score=18.27 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=9.4
Q ss_pred hhhhhccccchhh
Q 018776 329 VNIRKLSFSEREE 341 (350)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (350)
+|++||+-++||-
T Consensus 10 ddqekclcnkdec 22 (39)
T d1deca_ 10 DDQEKCLCNKDEC 22 (39)
T ss_dssp SCSSCEESSSSEE
T ss_pred cchhhccccCCCC
Confidence 4678888887763
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.27 E-value=80 Score=21.27 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHhccCCCCcc
Q 018776 298 TGLLLIAMGITLKLLPADDKPI 319 (350)
Q Consensus 298 iG~~lvl~Gv~ly~~~k~~~~~ 319 (350)
.++.+...|...|...|+|+++
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 3445556677777776665543
No 10
>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
Probab=5.11 E-value=1.3e+02 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCCcccccccEEeeecCCCchhHHHH
Q 018776 1 MNKNEEQTRSLFGISLTDRPKWQQFL 26 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~l~ 26 (350)
|+|+.-.++.++++.-++..+..++-
T Consensus 2 m~~~~~~ri~Hv~i~v~Dle~s~~FY 27 (149)
T d1ss4a_ 2 MAKNKLLRMDNVSIVVESLDNAISFF 27 (149)
T ss_dssp CTTCCEEEEEEEEEECSCHHHHHHHH
T ss_pred CCCCCCCEEeEEEEEeCCHHHHHHHH
Confidence 88999999999999999988866543
Done!