Query 018777
Match_columns 350
No_of_seqs 157 out of 1026
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 27.7 27 0.00091 21.2 1.4 26 68-93 4-29 (32)
2 1rz2_A Conserved hypothetical 12.5 89 0.003 28.1 2.0 7 99-105 45-51 (254)
3 2l2t_A Receptor tyrosine-prote 12.0 1.8E+02 0.0061 19.4 2.9 10 320-329 8-17 (44)
4 3syn_E ATP-binding protein YLX 11.5 1.7E+02 0.0057 16.4 2.1 19 89-107 2-20 (23)
5 4ev6_A Magnesium transport pro 10.4 2.1E+02 0.0072 26.5 4.0 30 317-346 306-337 (339)
6 3j00_Z Cell division protein F 7.5 2.3E+02 0.0077 21.9 2.4 22 69-90 3-24 (98)
7 2iub_A CORA, divalent cation t 6.9 1.8E+02 0.0062 27.3 1.8 29 317-345 330-360 (363)
8 1m4j_A A6 gene product, twinfi 6.5 2.4E+02 0.0081 22.6 2.2 28 2-29 94-123 (142)
9 2kse_A Sensor protein QSEC; me 6.3 2.9E+02 0.0098 21.7 2.6 15 78-92 171-185 (186)
10 3rfr_A PMOB; membrane, oxidore 6.1 3E+02 0.01 26.8 2.9 40 46-88 163-202 (419)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=27.74 E-value=27 Score=21.20 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHhhcchhhhhhH
Q 018777 68 STWSKWLLFLPGAISFGLGTWQIFRR 93 (350)
Q Consensus 68 ~~w~~ll~~l~~~i~~~LG~WQl~R~ 93 (350)
..|-.+.-++++..++..|+|-+.-.
T Consensus 4 tiweviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666655556566778999976543
No 2
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=12.46 E-value=89 Score=28.10 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 018777 99 MLEYRQN 105 (350)
Q Consensus 99 li~~~~~ 105 (350)
..+++++
T Consensus 45 ~~~~l~~ 51 (254)
T 1rz2_A 45 VMAEAQN 51 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.95 E-value=1.8e+02 Score=19.38 Aligned_cols=10 Identities=0% Similarity=-0.383 Sum_probs=4.1
Q ss_pred CchHHHHHHH
Q 018777 320 DHLNYTLTWY 329 (350)
Q Consensus 320 ~Hl~YAlQWf 329 (350)
+|-+-|..=.
T Consensus 8 ~~~aIA~gVV 17 (44)
T 2l2t_A 8 RTPLIAAGVI 17 (44)
T ss_dssp SSHHHHHHHH
T ss_pred CcceEEEeeh
Confidence 3444444333
No 4
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=11.51 E-value=1.7e+02 Score=16.45 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 018777 89 QIFRRQDKIKMLEYRQNRL 107 (350)
Q Consensus 89 Ql~R~~~K~~li~~~~~~~ 107 (350)
|+.|+++-..|-+.++.+.
T Consensus 2 qmnrydqaatlrakmekre 20 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKRE 20 (26)
T ss_pred ccchHHHHHHHHHHHHHHh
Confidence 7889988888877776653
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.37 E-value=2.1e+02 Score=26.49 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=15.2
Q ss_pred CCCC--chHHHHHHHHHHHHHHHHHHHhhccc
Q 018777 317 MPQD--HLNYTLTWYSLSAAVTFMAFKRLRPK 346 (350)
Q Consensus 317 ~p~~--Hl~YAlQWf~LA~~~l~~~~~~~r~~ 346 (350)
+|+- +.||.+-|..++++++++++.+-|++
T Consensus 306 mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 306 LPLANNPQGFWLVMALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp CTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444 45666655555555555544443443
No 6
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=7.45 E-value=2.3e+02 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhh
Q 018777 69 TWSKWLLFLPGAISFGLGTWQI 90 (350)
Q Consensus 69 ~w~~ll~~l~~~i~~~LG~WQl 90 (350)
.|.++++++++++.+..|.|.+
T Consensus 3 ~~~G~~F~l~Vl~~l~~~~~~~ 24 (98)
T 3j00_Z 3 RLAGILFLLTVLTTVLVSGWVV 24 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHHH
Confidence 3555654444445556667754
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=6.85 E-value=1.8e+02 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=10.5
Q ss_pred CCCCch--HHHHHHHHHHHHHHHHHHHhhcc
Q 018777 317 MPQDHL--NYTLTWYSLSAAVTFMAFKRLRP 345 (350)
Q Consensus 317 ~p~~Hl--~YAlQWf~LA~~~l~~~~~~~r~ 345 (350)
+|+-|. ||-+-|..++++++++++++-|+
T Consensus 330 mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 330 MPELRWKWGYPVVLAVMGVIAVIMVVYFKKK 360 (363)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455544 55555555544444454444333
No 8
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=6.54 E-value=2.4e+02 Score=22.63 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=22.7
Q ss_pred cchhhhhHHHHHhHhhhhcCCCcc--eeec
Q 018777 2 KVKEKMAVASISKTLTKLGGGSSF--LLNH 29 (350)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 29 (350)
++++||..+|=.-+|.+.-+|... .|+.
T Consensus 94 ~vr~KMlYAssk~~lk~~l~g~~~~~~i~a 123 (142)
T 1m4j_A 94 HVRQKMLYAATRATLKKEFGGGHIKDEVFG 123 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeEEEEEe
Confidence 689999999988899888877766 6653
No 9
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=6.28 E-value=2.9e+02 Score=21.70 Aligned_cols=15 Identities=13% Similarity=-0.150 Sum_probs=9.0
Q ss_pred HHHHHhhcchhhhhh
Q 018777 78 PGAISFGLGTWQIFR 92 (350)
Q Consensus 78 ~~~i~~~LG~WQl~R 92 (350)
.+++++.+|.|.+.|
T Consensus 171 ~~~~~~~~~~~~vrr 185 (186)
T 2kse_A 171 ALPIMLIIMMVLLGR 185 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 334445677777765
No 10
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=6.13 E-value=3e+02 Score=26.82 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=0.0
Q ss_pred cCcccccccccccccccCCCCCchHHHHHHHHHHHHHhhcchh
Q 018777 46 SAPQLSSSSQDQENVRKGSAPSSTWSKWLLFLPGAISFGLGTW 88 (350)
Q Consensus 46 ~~~~~~~~~~~~~~~r~~~~~~~~w~~ll~~l~~~i~~~LG~W 88 (350)
.+|.+.+. .++|++-.+.......+=++-.++.+++|++|
T Consensus 163 tnpVttLt---G~TVDLEtygl~~v~~Wh~~W~~~g~aWll~W 202 (419)
T 3rfr_A 163 TDPVTLLD---GSTVDLENYGISRIYAWHLPWLAVGAAWILFW 202 (419)
T ss_dssp CCCEEBTT---SCEECTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEecC---CcEeechhcccCceEeehhHHHHHHHHHHHHH
Done!