Query 018777
Match_columns 350
No_of_seqs 157 out of 1026
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 05:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 56.4 6.8 0.00049 22.7 3.5 21 322-342 10-30 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 13.6 1.2E+02 0.0088 21.5 5.1 29 73-101 7-35 (158)
3 d1q90m_ f.23.25.1 (M:) PetM su 7.0 2.2E+02 0.016 16.0 3.3 22 323-344 7-28 (34)
4 d2iuba2 f.17.3.1 (A:286-349) M 6.4 1.2E+02 0.0084 19.6 1.9 16 318-334 34-49 (64)
5 d2vvpa1 c.121.1.1 (A:3-158) Al 6.0 1.7E+02 0.013 22.5 3.1 25 89-113 132-156 (156)
6 d1ja1a1 b.43.4.1 (A:240-518) N 5.5 85 0.0062 26.5 0.9 21 28-48 209-229 (279)
7 d1sjwa_ d.17.4.9 (A:) Nogaloni 5.0 1.5E+02 0.011 20.9 2.0 39 239-284 97-135 (142)
8 d1frba_ c.1.7.1 (A:) FR-1 (fib 4.8 1.2E+02 0.0088 25.1 1.4 19 83-101 15-33 (315)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 4.6 2.5E+02 0.018 16.4 2.4 11 323-334 10-20 (37)
10 d1us0a_ c.1.7.1 (A:) Aldose re 4.5 1.4E+02 0.011 24.5 1.8 21 83-103 16-36 (314)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=56.43 E-value=6.8 Score=22.66 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 018777 322 LNYTLTWYSLSAAVTFMAFKR 342 (350)
Q Consensus 322 l~YAlQWf~LA~~~l~~~~~~ 342 (350)
++|--.|.+|+++.+++++.+
T Consensus 10 layekgwlafslamlfvfial 30 (34)
T d1xmeb2 10 LAYEKGWLAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 589999999999988776554
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=13.65 E-value=1.2e+02 Score=21.53 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 018777 73 WLLFLPGAISFGLGTWQIFRRQDKIKMLE 101 (350)
Q Consensus 73 ll~~l~~~i~~~LG~WQl~R~~~K~~li~ 101 (350)
+++++.+.||..++.-.+.++.+|....+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~ 35 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888887777655443
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.04 E-value=2.2e+02 Score=15.99 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 018777 323 NYTLTWYSLSAAVTFMAFKRLR 344 (350)
Q Consensus 323 ~YAlQWf~LA~~~l~~~~~~~r 344 (350)
|-|++-.++.+..+.+.|.++|
T Consensus 7 gta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 7 GTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhee
Confidence 6678888887777666665554
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.37 E-value=1.2e+02 Score=19.56 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=3.4
Q ss_pred CCCchHHHHHHHHHHHH
Q 018777 318 PQDHLNYTLTWYSLSAA 334 (350)
Q Consensus 318 p~~Hl~YAlQWf~LA~~ 334 (350)
|+.|-.|++ |+.+++.
T Consensus 34 P~~~~~~~~-~~~~~~~ 49 (64)
T d2iuba2 34 PELRWKWGY-PVVLAVM 49 (64)
T ss_dssp --------C-HHHHHHH
T ss_pred CCCCccHHH-HHHHHHH
Confidence 444555555 3444443
No 5
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.01 E-value=1.7e+02 Score=22.49 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcc
Q 018777 89 QIFRRQDKIKMLEYRQNRLQMDPLR 113 (350)
Q Consensus 89 Ql~R~~~K~~li~~~~~~~~~~Pv~ 113 (350)
.=.|.+.+.+.+.++++....+|.|
T Consensus 132 ~ggRh~~Rv~ki~~~e~~~~~~~~p 156 (156)
T d2vvpa1 132 KAQRHQRRIDILAEYERTHEAPPVP 156 (156)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCChHHHHHHHHHHHHHcCCCCCCC
Confidence 3469999999999999998888865
No 6
>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.46 E-value=85 Score=26.48 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=16.1
Q ss_pred eccCCccccccccccccccCc
Q 018777 28 NHRAPPRLYSSSAAAALSSAP 48 (350)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (350)
.-+.+||+||+.||+..+.+.
T Consensus 209 lp~L~PR~YSISSSp~~~p~~ 229 (279)
T d1ja1a1 209 LPRLQARYYAIASSSKVHPNS 229 (279)
T ss_dssp SCBCCCEEEECCSCTTTCTTE
T ss_pred CccCCCceeeEecCcccCCCE
Confidence 457889999999998755443
No 7
>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]}
Probab=5.02 E-value=1.5e+02 Score=20.94 Aligned_cols=39 Identities=10% Similarity=-0.153 Sum_probs=25.6
Q ss_pred cceEEEEEEEEcCCCCCCCCCCCCCCCCceeeeCHHHHHHHcCCCC
Q 018777 239 IASVEVVGVVRGSEKPSIFVPANDPSSCQWFYVDVPAIACACGLPE 284 (350)
Q Consensus 239 ~g~v~v~G~lr~~e~~~~~~~~n~~~~~~w~~iD~~~la~~~g~~~ 284 (350)
..++++.|.-.-- -.++-....|.+.|...|.+++|++.
T Consensus 97 Gk~~~~~~~~~~~-------~~dGkI~e~~~~~D~~~~~~QlG~~~ 135 (142)
T d1sjwa_ 97 DRRFSGEQVHLMR-------IVDGKIRDHRDWPDFQGTLRQLGDPW 135 (142)
T ss_dssp CCEEEEEEEEEEE-------EETTEEEEEEEEECHHHHHHHTTSCC
T ss_pred cceEEEEEEEEEE-------EECCEEEEEEEeccHHHHHHHCCCCC
Confidence 4568888853211 11222345689999999999999864
No 8
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.77 E-value=1.2e+02 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=12.7
Q ss_pred hhcchhhhhhHHHHHHHHH
Q 018777 83 FGLGTWQIFRRQDKIKMLE 101 (350)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~ 101 (350)
++||+|++...+-++.+-.
T Consensus 15 iGlGtw~~~~~~a~~~i~~ 33 (315)
T d1frba_ 15 VGLGTWKSPPNQVKEAVKA 33 (315)
T ss_dssp BCEECTTCCHHHHHHHHHH
T ss_pred cceECCCCCHHHHHHHHHH
Confidence 4899999987555444333
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.63 E-value=2.5e+02 Score=16.41 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 018777 323 NYTLTWYSLSAA 334 (350)
Q Consensus 323 ~YAlQWf~LA~~ 334 (350)
-|++ |.-||+.
T Consensus 10 ly~F-w~FFagL 20 (37)
T d1eysh2 10 IWAF-WLFFFGL 20 (37)
T ss_dssp HHHH-HHHHHHH
T ss_pred HHHH-HHHHHHH
Confidence 3555 5555443
No 10
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=1.4e+02 Score=24.55 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=13.7
Q ss_pred hhcchhhhhhHHHHHHHHHHH
Q 018777 83 FGLGTWQIFRRQDKIKMLEYR 103 (350)
Q Consensus 83 ~~LG~WQl~R~~~K~~li~~~ 103 (350)
++||+||+.+.+-...+-..+
T Consensus 16 iglGtw~~~~~~~~~~i~~A~ 36 (314)
T d1us0a_ 16 LGLGTWKSPPGQVTEAVKVAI 36 (314)
T ss_dssp BCEECTTCCHHHHHHHHHHHH
T ss_pred eeeECCCCCHHHHHHHHHHHH
Confidence 489999998765544444344
Done!