Query 018778
Match_columns 350
No_of_seqs 252 out of 1645
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.4E-34 7.4E-39 278.9 30.3 238 110-349 14-257 (455)
2 PRK00187 multidrug efflux prot 100.0 1.5E-30 3.3E-35 254.7 31.0 237 110-349 7-252 (464)
3 PRK10367 DNA-damage-inducible 100.0 1.3E-30 2.7E-35 253.4 29.9 239 109-349 5-248 (441)
4 PRK10189 MATE family multidrug 100.0 2.3E-30 5.1E-35 253.9 31.6 244 105-348 19-274 (478)
5 PRK09575 vmrA multidrug efflux 100.0 9.9E-30 2.2E-34 248.4 31.1 240 105-349 7-250 (453)
6 PRK01766 multidrug efflux prot 100.0 1.7E-28 3.7E-33 240.0 30.4 240 108-349 7-255 (456)
7 TIGR00797 matE putative efflux 99.9 4E-24 8.7E-29 201.0 28.9 227 121-349 1-232 (342)
8 PRK00187 multidrug efflux prot 99.9 4.9E-24 1.1E-28 208.8 26.8 209 109-317 232-444 (464)
9 KOG1347 Uncharacterized membra 99.9 8.8E-25 1.9E-29 212.2 18.4 237 109-350 24-264 (473)
10 PRK01766 multidrug efflux prot 99.9 3.8E-23 8.2E-28 202.3 25.6 209 108-318 234-443 (456)
11 PRK10189 MATE family multidrug 99.9 6.1E-22 1.3E-26 194.5 29.0 211 109-321 255-466 (478)
12 COG0534 NorM Na+-driven multid 99.9 1.6E-21 3.5E-26 190.1 27.3 210 108-320 236-446 (455)
13 TIGR01695 mviN integral membra 99.9 1.3E-20 2.7E-25 186.4 31.4 206 110-317 220-428 (502)
14 PRK09575 vmrA multidrug efflux 99.9 4.4E-21 9.5E-26 187.5 26.7 206 109-317 230-436 (453)
15 PRK10367 DNA-damage-inducible 99.8 1.5E-18 3.2E-23 168.9 26.2 199 111-317 230-431 (441)
16 PF03023 MVIN: MviN-like prote 99.8 1.8E-17 3.9E-22 161.6 31.9 206 111-318 196-404 (451)
17 TIGR02900 spore_V_B stage V sp 99.8 1.1E-17 2.3E-22 164.9 30.0 203 109-317 221-434 (488)
18 PF01554 MatE: MatE; InterPro 99.8 9.3E-21 2E-25 159.0 6.5 161 121-283 1-162 (162)
19 TIGR02900 spore_V_B stage V sp 99.8 1.2E-17 2.5E-22 164.7 27.4 227 116-348 2-240 (488)
20 TIGR01695 mviN integral membra 99.8 1.3E-16 2.8E-21 157.9 30.4 230 115-348 2-238 (502)
21 COG0728 MviN Uncharacterized m 99.8 7.7E-16 1.7E-20 149.4 29.9 230 110-345 229-461 (518)
22 PRK15099 O-antigen translocase 99.7 5E-16 1.1E-20 150.3 24.4 224 115-348 3-230 (416)
23 PRK15099 O-antigen translocase 99.7 1.3E-15 2.7E-20 147.5 26.9 199 109-316 211-411 (416)
24 PRK10459 colanic acid exporter 99.7 4.1E-15 8.8E-20 147.0 29.1 200 110-317 204-405 (492)
25 COG2244 RfbX Membrane protein 99.7 3.1E-15 6.8E-20 147.2 26.4 187 109-302 209-396 (480)
26 PF03023 MVIN: MviN-like prote 99.5 1.3E-11 2.8E-16 120.6 27.0 202 143-347 5-212 (451)
27 TIGR00797 matE putative efflux 99.4 4.7E-12 1E-16 119.0 17.1 130 109-240 212-341 (342)
28 COG0728 MviN Uncharacterized m 99.3 1.8E-08 3.9E-13 98.4 30.2 234 113-346 7-245 (518)
29 PF01943 Polysacc_synt: Polysa 99.2 2.4E-08 5.1E-13 90.1 27.0 217 116-348 2-220 (273)
30 PRK10459 colanic acid exporter 99.2 1.5E-08 3.2E-13 100.2 24.7 215 113-347 5-221 (492)
31 KOG1347 Uncharacterized membra 99.1 8.7E-11 1.9E-15 114.6 8.0 209 109-319 243-454 (473)
32 PF13440 Polysacc_synt_3: Poly 98.9 3.3E-06 7.2E-11 75.3 26.1 193 132-347 3-197 (251)
33 PF14667 Polysacc_synt_C: Poly 98.9 5.3E-08 1.1E-12 80.0 12.7 80 237-318 2-81 (146)
34 COG2244 RfbX Membrane protein 98.8 2.2E-06 4.8E-11 84.5 22.5 219 113-348 6-228 (480)
35 PF07260 ANKH: Progressive ank 98.5 0.0002 4.3E-09 65.1 25.6 228 112-347 10-249 (345)
36 PF04506 Rft-1: Rft protein; 98.4 1.7E-05 3.8E-10 78.9 19.1 202 113-317 253-470 (549)
37 KOG2864 Nuclear division RFT1 97.8 0.0022 4.8E-08 61.0 17.9 201 113-317 239-449 (530)
38 PF01943 Polysacc_synt: Polysa 97.4 0.0016 3.4E-08 58.5 10.5 72 109-180 201-273 (273)
39 PF13440 Polysacc_synt_3: Poly 96.3 0.035 7.6E-07 49.1 9.8 65 114-178 184-250 (251)
40 COG4267 Predicted membrane pro 92.1 11 0.00024 35.7 23.6 134 165-316 77-210 (467)
41 COG4267 Predicted membrane pro 91.0 11 0.00024 35.8 14.2 118 185-308 319-437 (467)
42 PF05975 EcsB: Bacterial ABC t 66.4 1.2E+02 0.0027 28.9 17.1 39 183-221 88-126 (386)
43 PF05313 Pox_P21: Poxvirus P21 55.1 94 0.002 26.2 8.0 26 291-316 135-160 (189)
44 PF04506 Rft-1: Rft protein; 43.6 3.6E+02 0.0079 27.3 15.8 56 118-173 6-64 (549)
45 COG4176 ProW ABC-type proline/ 39.3 1.9E+02 0.004 26.4 7.9 75 113-188 203-284 (290)
46 PF03631 Virul_fac_BrkB: Virul 38.7 2.8E+02 0.0061 24.6 21.4 136 166-303 85-239 (260)
47 PF04235 DUF418: Protein of un 37.1 2.3E+02 0.005 23.1 12.6 28 184-211 9-36 (163)
48 PRK09556 uhpT sugar phosphate 36.8 4E+02 0.0087 25.8 12.2 24 119-142 27-50 (467)
49 PF04505 Dispanin: Interferon- 36.7 1.6E+02 0.0035 21.3 6.4 42 168-210 36-77 (82)
50 TIGR01299 synapt_SV2 synaptic 34.8 5.7E+02 0.012 27.0 21.1 18 166-183 215-232 (742)
51 TIGR00383 corA magnesium Mg(2+ 34.5 1.1E+02 0.0023 28.3 6.1 25 294-319 293-317 (318)
52 PF03904 DUF334: Domain of unk 34.2 2.1E+02 0.0044 25.2 7.2 40 182-222 140-179 (230)
53 PF01102 Glycophorin_A: Glycop 32.5 80 0.0017 25.0 4.1 8 310-317 84-91 (122)
54 PF14184 YrvL: Regulatory prot 31.6 2.7E+02 0.0059 22.3 13.4 104 193-300 5-108 (132)
55 PF04144 SCAMP: SCAMP family; 29.6 3.4E+02 0.0074 22.8 13.7 39 261-299 96-135 (177)
56 COG0170 SEC59 Dolichol kinase 27.5 1.1E+02 0.0025 26.7 4.7 23 161-183 118-140 (216)
57 COG4956 Integral membrane prot 26.3 5.4E+02 0.012 24.0 12.8 30 165-194 14-43 (356)
58 TIGR00822 EII-Sor PTS system, 23.8 5.5E+02 0.012 23.3 21.1 100 152-256 97-200 (265)
59 PF07260 ANKH: Progressive ank 23.6 2.8E+02 0.0061 26.0 6.5 95 112-211 234-343 (345)
60 PF13321 DUF4084: Domain of un 23.2 2.8E+02 0.0062 24.6 6.1 54 221-274 23-76 (304)
61 PRK09546 zntB zinc transporter 23.1 1.7E+02 0.0037 27.2 5.3 25 294-319 299-323 (324)
62 PF00689 Cation_ATPase_C: Cati 22.5 3.5E+02 0.0077 22.2 6.8 53 195-253 127-179 (182)
63 KOG2864 Nuclear division RFT1 22.1 7.8E+02 0.017 24.4 22.8 183 117-308 12-199 (530)
64 PRK04288 antiholin-like protei 20.0 6.2E+02 0.013 22.5 18.2 112 107-249 81-193 (232)
65 COG0598 CorA Mg2+ and Co2+ tra 20.0 1.4E+02 0.0031 27.7 4.1 25 294-319 297-321 (322)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.4e-34 Score=278.93 Aligned_cols=238 Identities=26% Similarity=0.331 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 189 (350)
+..|+++++++|++++++++.+++.+|++++||+|++++||.+++.++..+...+..|++.+.+++++|++|+||+++++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~ 93 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAK 93 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (350)
Q Consensus 190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 269 (350)
+..++++.+.+++++++.++.+.+.++++.+++. ++|+.+.+..|+++..++.|+..++.++.+++|+.||++.+++.
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 9999999999999999999999999999999977 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhHHHHhh-hc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccccccCCChHHHHHHHHHHHHHH
Q 018778 270 LVVASAVNGIGDIVLCRF-LG-YGIAGAAWATMASQVIAAYMMIINLNQKGY----NAFAISIPLPSELLAIFELAAPVF 343 (350)
Q Consensus 270 ~~~~~~lni~l~~ili~~-~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~il~l~~P~~ 343 (350)
.+++.++|+++||+|+++ ++ +|+.|+++||++++++.++++++++.++++ ...+.++++++.+++++++|+|.+
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~ 251 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence 999999999999999998 57 999999999999999999999999887652 223455889999999999999999
Q ss_pred HHHhhc
Q 018778 344 VMMMSK 349 (350)
Q Consensus 344 i~~~s~ 349 (350)
++++++
T Consensus 252 ~~~~~~ 257 (455)
T COG0534 252 LESLSE 257 (455)
T ss_pred HHHHHH
Confidence 998765
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.5e-30 Score=254.72 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 189 (350)
+++|+++++++|.+++++++.+...+|+++++++|++++|+++++.++.++...+..|++.+..++++|++|++|+++++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~ 86 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGAT 86 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 34699999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (350)
Q Consensus 190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 269 (350)
+..++++.+.++++++..++++ +.++++.+++. |+|+.+.+..|+++..++.|+..+...+++++|+.|+++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 87 RLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999998887766 67999999966 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhHHHHhhh----chhHHHHHHHHHHHHHHHHHHHHHHHhhccC-cccc----ccCCChHHHHHHHHHHH
Q 018778 270 LVVASAVNGIGDIVLCRFL----GYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAFA----ISIPLPSELLAIFELAA 340 (350)
Q Consensus 270 ~~~~~~lni~l~~ili~~~----~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~il~l~~ 340 (350)
++++.++|+++||+|++.. ++|+.|+++|+.+++.+..+.+++++++++. .+++ +.+++++.+|+++++|+
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999753 5899999999999999888777666654432 2222 23567889999999999
Q ss_pred HHHHHHhhc
Q 018778 341 PVFVMMMSK 349 (350)
Q Consensus 341 P~~i~~~s~ 349 (350)
|.+++++.+
T Consensus 244 P~~~~~~~~ 252 (464)
T PRK00187 244 PIGGTYAVE 252 (464)
T ss_pred hHHHHHHHH
Confidence 999987764
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.3e-30 Score=253.44 Aligned_cols=239 Identities=21% Similarity=0.278 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
|++.|+++++++|.+++++++.+++.+|++++|++ |++++|+++++.++.++...+..+++.+..+++||++|+||+++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45569999999999999999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+++..++++.+.+++++++.++...+.++++.+++. |+|+.+.+..|+++..++.|+..++.++.+++|+.||++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999998888899999999966 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-Cccc--cccCCCh-HHHHHHHHHHHHHH
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAF--AISIPLP-SELLAIFELAAPVF 343 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~il~l~~P~~ 343 (350)
+..+++.++|+++||++++.+++|+.|+++|+.+++++.+++.++++.++. +.+. +..++++ +.+++++++|+|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999999999999999999988999999999999999999888877766532 1212 2123332 47899999999999
Q ss_pred HHHhhc
Q 018778 344 VMMMSK 349 (350)
Q Consensus 344 i~~~s~ 349 (350)
+++..+
T Consensus 243 ~~~~~~ 248 (441)
T PRK10367 243 LRSLLL 248 (441)
T ss_pred HHHHHH
Confidence 887653
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.3e-30 Score=253.93 Aligned_cols=244 Identities=18% Similarity=0.190 Sum_probs=218.6
Q ss_pred ccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018778 105 DQSIWNQ--IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTN 182 (350)
Q Consensus 105 ~~~~~~~--~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~ 182 (350)
+++.|+. .|+++++++|.+++++++.+...+|++++|++|++++|+++++.++..+...+..|++.+..++++|++|+
T Consensus 19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga 98 (478)
T PRK10189 19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGK 98 (478)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Q 018778 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKD 262 (350)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~ 262 (350)
||++++++..++++.++++++++++++.+++.++++.++.++.|+|+.+.+..|+++..++.|+..+..++.+++||.||
T Consensus 99 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~ 178 (478)
T PRK10189 99 RDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGN 178 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999963347899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--Cccccc----cCCChHHH
Q 018778 263 SWGPLKALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKG--YNAFAI----SIPLPSEL 332 (350)
Q Consensus 263 ~~~~~~~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~ 332 (350)
++.++++++++.++|+++++++++. +++|+.|+++|+.+++++.+++.++++.++. ..+.++ .+++++.+
T Consensus 179 ~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
T PRK10189 179 TKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAII 258 (478)
T ss_pred hHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHH
Confidence 9999999999999999999999975 3799999999999999999888776665431 222221 23578999
Q ss_pred HHHHHHHHHHHHHHhh
Q 018778 333 LAIFELAAPVFVMMMS 348 (350)
Q Consensus 333 ~~il~l~~P~~i~~~s 348 (350)
++++++|+|.+++++.
T Consensus 259 ~~il~iG~P~~~~~~~ 274 (478)
T PRK10189 259 WEVMGIGIPASIESVL 274 (478)
T ss_pred HHHHHHhccHHHHHHH
Confidence 9999999999988764
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.98 E-value=9.9e-30 Score=248.37 Aligned_cols=240 Identities=18% Similarity=0.153 Sum_probs=219.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018778 105 DQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR 183 (350)
Q Consensus 105 ~~~~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~ 183 (350)
+++++ |+++++++|.+++++++.++..+|++++|++ |++++++++++.++.++...+..+++.+..++++|++|+|
T Consensus 7 ~~~~~---k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 7 NQSIY---RTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred cCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34455 9999999999999999999999999999996 9999999999999999999888999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCC
Q 018778 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDS 263 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~ 263 (350)
|+|++++..++++.+.++++++++++.++++++++.+++. |+++.+.+..|+++.+++.|+..++.....++|+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~ 161 (453)
T PRK09575 84 DLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESP 161 (453)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 9999999999999999999999999999999999999966 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccc--cccCCChHHHHHHHHHHH
Q 018778 264 WGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF--AISIPLPSELLAIFELAA 340 (350)
Q Consensus 264 ~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~il~l~~ 340 (350)
+.+++.++++.++|+++|+++++.+++|+.|+++|+.+++++.+++.++++++++. .+. +..+++++.+++++++|+
T Consensus 162 ~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~ 241 (453)
T PRK09575 162 NLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGS 241 (453)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhCh
Confidence 99999999999999999999998889999999999999999999988777665432 222 223567788999999999
Q ss_pred HHHHHHhhc
Q 018778 341 PVFVMMMSK 349 (350)
Q Consensus 341 P~~i~~~s~ 349 (350)
|.++++..+
T Consensus 242 P~~~~~~~~ 250 (453)
T PRK09575 242 SSFFMYLYG 250 (453)
T ss_pred hHHHHHHHH
Confidence 999987653
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.97 E-value=1.7e-28 Score=240.02 Aligned_cols=240 Identities=16% Similarity=0.119 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
.++.+|+++++++|.+++.++..+...+|+.+++++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 45557999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+++..++++.+.+++++++.+++++++++++.+++. |+|+.+.+..|+++.+++.|+..+..++++++|+.|+++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999999999999999999976 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cc----cccCCChHHHHHHHHH
Q 018778 268 KALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-AF----AISIPLPSELLAIFEL 338 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~il~l 338 (350)
+.++++.++|+++++++++. +.+|+.|+++|+.+++++.+++..+++++++.. .. ++.+++++.+|+++++
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 99999999999999999864 468999999999999999999888887654321 11 2235677899999999
Q ss_pred HHHHHHHHhhc
Q 018778 339 AAPVFVMMMSK 349 (350)
Q Consensus 339 ~~P~~i~~~s~ 349 (350)
|+|.+++...+
T Consensus 245 ~~P~~~~~~~~ 255 (456)
T PRK01766 245 GLPIGLAIFFE 255 (456)
T ss_pred cchHHHHHHHH
Confidence 99998887654
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.94 E-value=4e-24 Score=201.05 Aligned_cols=227 Identities=26% Similarity=0.326 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 018778 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (350)
Q Consensus 121 P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 200 (350)
|.++++++..++..+|+++++++|++++++++++.++.++...+..|++++..+.+++++|++|+++.++..++.+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHh
Q 018778 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIG 280 (350)
Q Consensus 201 ~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l 280 (350)
+++++++++.+++++++..+++. |++..+.+..|+++++++.++..++.+..+++|+.|+++.+++..+++.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865 5688899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHh-hhc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc---ccCCChHHHHHHHHHHHHHHHHHhhc
Q 018778 281 DIVLCR-FLG-YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA---ISIPLPSELLAIFELAAPVFVMMMSK 349 (350)
Q Consensus 281 ~~ili~-~~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~il~l~~P~~i~~~s~ 349 (350)
+++++. .++ +|+.|+++++.+++++.+++.+++++|+...+.+ ..+++++.+|+++++|+|.++++++.
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~ 232 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILE 232 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHH
Confidence 999987 677 8899999999999999999888777653322222 34567889999999999999988753
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=4.9e-24 Score=208.82 Aligned_cols=209 Identities=16% Similarity=0.095 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
++.+|+++++++|.+++.+++.....+|+.+++++|++++|+++++.++..+...+..|++.+.+++++|++|+||++++
T Consensus 232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~ 311 (464)
T PRK00187 232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEA 311 (464)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCcc---chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~---~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~ 265 (350)
++..++++.++++++++++++++++.+++..++..++|+ |+.+.+..|+++.+++.++..++.++.+++||.||++.
T Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~ 391 (464)
T PRK00187 312 RRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDART 391 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHH
Confidence 999999999999999999999999999999999532233 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 266 PLKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 266 ~~~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
+++..+++. ++|++++|++.+.+++|+.|+|+++.+++++..++....++++
T Consensus 392 ~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 392 TFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 9999999999998899999999999999999888776665443
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.93 E-value=8.8e-25 Score=212.15 Aligned_cols=237 Identities=21% Similarity=0.182 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~-~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
+++.|++++++.|+++..+.+++.+.+++.++||+|+.++|+.+++..+.+.... +..|+..+++|+|+|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 6778999999999999999999999999999999999999999999999998654 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
.+.+.+++..+....++++..+++ +.++|+..++| ||++.+.+..|.+++++..+.+.....+..++|+|++..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999999999999998866 88999999988 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc---ccCCChHHHHHHHHHHHHHHH
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA---ISIPLPSELLAIFELAAPVFV 344 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~il~l~~P~~i 344 (350)
++..++.++|+++++++++.+++|+.|++++..+++++...+...|+.... .... +.+. ++.|++++++++|..+
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999999876654 1121 2233 8899999999999999
Q ss_pred HHhhcC
Q 018778 345 MMMSKV 350 (350)
Q Consensus 345 ~~~s~~ 350 (350)
|.+.|+
T Consensus 259 miclE~ 264 (473)
T KOG1347|consen 259 MICLEW 264 (473)
T ss_pred eeHHHH
Confidence 987653
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=3.8e-23 Score=202.26 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
.++..|+++++++|.+++.+++.+...++..+++++|++++|+++++..+.++...+..|++.+.++.++|++|+||+++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+++..+.++.++++++++++++++.+.+++..+|.. |+|+.+.+..|+++..+..++..++.+..+++||.||++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999999999999999999954 889999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018778 268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318 (350)
Q Consensus 268 ~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~ 318 (350)
+..+++. ++++++.+++...+++|+.|+++++.+++++..++.++++.+.+
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 78999999998878899999999999999999998888776643
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.91 E-value=6.1e-22 Score=194.49 Aligned_cols=211 Identities=12% Similarity=0.114 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
++.+|++++.++|..++.++..+...+-+.+++++|++++|+++++.++.++...+..|++.+..++++|++|++|++++
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a 334 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQA 334 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45679999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 268 (350)
++..+.++.+++++++.++++++++.+++..+|. +|+|+.+.+..++++.++..|+..++.+..+++||.||++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt--~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYT--QDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 9999999999999999999999999999999994 48899999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 018778 269 ALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA 321 (350)
Q Consensus 269 ~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~ 321 (350)
+++++. ++.+++.|++...+++|+.|.|++..+++.+..++.++++++.+|.+
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 988877 67778888887777899999999999999999998888887776655
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=1.6e-21 Score=190.10 Aligned_cols=210 Identities=18% Similarity=0.165 Sum_probs=197.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
.++.+|+++++++|..++.+.......+-+.+++++|++++|+++++.++.++...+..|++++.+++++|++|+||+++
T Consensus 236 ~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~ 315 (455)
T COG0534 236 DRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKR 315 (455)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+++..+.+..+++++++.++++++++.+++..+|.. |+|+.+.+..++++.++..++..++.+..+++||.||++.++
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~ 393 (455)
T COG0534 316 ARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF 393 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999955 789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018778 268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYN 320 (350)
Q Consensus 268 ~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~ 320 (350)
+..+++. .+.+++.|++...+ +|..|.|++..+++.+..++..+++++++|.
T Consensus 394 ~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 394 IISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999877 55678778887665 8999999999999999999999988877654
No 13
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.89 E-value=1.3e-20 Score=186.43 Aligned_cols=206 Identities=17% Similarity=0.111 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~-~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
+.+|++++++.|..++.+...+...+|..+.+.+|++++++|+.+.++.++... +..+++.++.|.+++++|++|++++
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 456999999999999999999999999998777899999999999999988765 4688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC--ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~--d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~ 266 (350)
++.+++++.+...++++++++++++++++..++++++ |+|....+..++++++++.++..+..++.+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 9999999999999999999999999999999997743 56788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
++..+++.++|++++++++ +.+|+.|+++|+.+++.+..++..++++|+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987 467999999999999999999888777665
No 14
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=4.4e-21 Score=187.51 Aligned_cols=206 Identities=11% Similarity=0.091 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~-~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
++.+|++++++.|..++.....+...+...+++++|+ +++|+++++.++..+...+..|++.+..++++|++|+||+|+
T Consensus 230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~ 309 (453)
T PRK09575 230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDN 309 (453)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence 4557999999999999999999999999999999985 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+++..++++.+++..+++++++++.+.+++..+|.. +|+|+.+.+..|+++.+++.++..++.+..+++||.|+++.++
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 388 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL 388 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999999999999999999953 3679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
+.++...++++++.|++.. .+|+.|+|+|+.+++++.+++.+++++++
T Consensus 389 ~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 389 FISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998888889988888753 47999999999999999888877766553
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=1.5e-18 Score=168.95 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 018778 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190 (350)
Q Consensus 111 ~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~ 190 (350)
.+|++++.+.|..++.++......+-+.+++++|++++|+++++.++.++...+..|++.+..++++|++|+||++++++
T Consensus 230 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~ 309 (441)
T PRK10367 230 NFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLD 309 (441)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCC---CChHHH
Q 018778 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMK---DSWGPL 267 (350)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g---~~~~~~ 267 (350)
..++++.+.++++++++++++++.+++..+|. +|+|+.+.+..++++.++..+...+..+...+++|.+ |++.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt--~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 310 VWRAACRQSGIVALLFSLVYALAGEHIIALLT--SLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999999999999994 4899999999999998876443324444444455544 599999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
+++++...+ .++.. +.+|+.|.|+|..+++.+..+++.++++++
T Consensus 388 ~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 388 AVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887553 11222 357999999999999999999888766544
No 16
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.83 E-value=1.8e-17 Score=161.64 Aligned_cols=206 Identities=18% Similarity=0.127 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHH
Q 018778 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ 189 (350)
Q Consensus 111 ~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~ 189 (350)
..|++++...|.+++.....+...+|+.+.+.+++.++++++.+.++.+++..+. .+++++..|..++...+||.++.+
T Consensus 196 ~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~ 275 (451)
T PF03023_consen 196 NLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFR 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3599999999999999999999999999999999999999999999999988665 799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC--CccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGS--KNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~--~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
+.+++++...+.+.+|++++++.+++++++++++. -|.|-.+....+++++++++|++.+..++.+.+.+++|++.++
T Consensus 276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~ 355 (451)
T PF03023_consen 276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPV 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHH
Confidence 99999999999999999999999999999999742 3556678888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~ 318 (350)
+..+++.++|++++++++ +.+|..|.++|+.++.++.+++++++++|+.
T Consensus 356 ~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 356 RISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998877 5779999999999999999999988887764
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.83 E-value=1.1e-17 Score=164.94 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C---hhhHhHH----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG----S---SLELAAL----GPGTVLCDNMSYIFMFLSIATSNLVA 177 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~----g---~~~laa~----~la~~~~~~~~~~~~gl~~a~~~~~s 177 (350)
++.+|+++++++|.+++.+...+...+|+.++++. | .++.+.+ +++.++..++..+..+++.+..|.++
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999884 2 1222222 35566777777777899999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018778 178 TSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAS 257 (350)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L 257 (350)
+++|++|+++.++..++...+..++++|++++++.++++++.++++ ++ .+..++++++++.++..++....+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 32 35789999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 258 LGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
++.||++..++..+++.++|++++++++..+.+|+.|+++|+.+++++..++..++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766788999999999999999999888877654
No 18
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.82 E-value=9.3e-21 Score=159.01 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 018778 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (350)
Q Consensus 121 P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 200 (350)
|.+++.+++.+...+|+.+++++|++++++++++..+.++...+..|++.++.+.++|++|++|++++++..++++.+.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHHhH
Q 018778 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS-AVNGI 279 (350)
Q Consensus 201 ~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~-~lni~ 279 (350)
++++++.++++++.+++..+++. |+|+.+.+..|+++..++.|+..+..+..+++||.|+++..++..+++. ++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999966 7789999999999999999999999999999999999999999999999 99999
Q ss_pred hhHH
Q 018778 280 GDIV 283 (350)
Q Consensus 280 l~~i 283 (350)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.81 E-value=1.2e-17 Score=164.70 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 018778 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (350)
Q Consensus 116 ~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 193 (350)
+|-+.|.++++++..+.+.+|..+++| +|+++.|+++++.++..+...+. .|++.+....++|+.|++|++++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 466899999999999999999999999 59999999999999988887776 6899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 018778 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (350)
Q Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~ 273 (350)
.++.+.++++++++++++++++++...+++ |++. ..+++++++..++..+..+...++|+.++.+..+..++++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999899999887755 3332 3578889999999999999999999999999999999999
Q ss_pred HHHHhHhhHHHHh-----hhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--cc---ccCCChHHHHHHHHHHHHHH
Q 018778 274 SAVNGIGDIVLCR-----FLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA--FA---ISIPLPSELLAIFELAAPVF 343 (350)
Q Consensus 274 ~~lni~l~~ili~-----~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~il~l~~P~~ 343 (350)
.++|+.++..++. ...+|+.|+++++.+++++..+..+++++++.+.+ .+ +.+.+++.+|+++++++|.+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence 9999887666553 23578899999999999999988776665443311 11 12345678999999999999
Q ss_pred HHHhh
Q 018778 344 VMMMS 348 (350)
Q Consensus 344 i~~~s 348 (350)
++++.
T Consensus 236 l~~~~ 240 (488)
T TIGR02900 236 LSRFI 240 (488)
T ss_pred HHHHH
Confidence 87654
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.79 E-value=1.3e-16 Score=157.86 Aligned_cols=230 Identities=12% Similarity=0.005 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhH-hHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQH 190 (350)
Q Consensus 115 i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~l-aa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~ 190 (350)
++|-+.-.++..+++.+++++|.+++++ +|++++ ++++++.++.+....+. .|++.+..+...++.+++ ++.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4677888899999999999999999999 799999 89999999987776554 468888777766654333 56676
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778 191 QISVLLFVGL-ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (350)
Q Consensus 191 ~~~~~~~~~~-~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 269 (350)
....+..... +.++.+.++.+++++++..++..+.|++..+.+..|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6666555554 444455677777899999887422255777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhHHHHhhhchhHHHHH--HHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778 270 LVVASAVNGIGDIVLCRFLGYGIAGAA--WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (350)
Q Consensus 270 ~~~~~~lni~l~~ili~~~~~Gi~Gaa--~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~ 347 (350)
+++..+++++..+++ ..++|..|++ +++.+++++..++.+++++|++.......+.+++.+|++++.++|..++..
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 237 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS 237 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence 999988887743333 4678999998 999999999988887776654321111123466789999999999997654
Q ss_pred h
Q 018778 348 S 348 (350)
Q Consensus 348 s 348 (350)
.
T Consensus 238 ~ 238 (502)
T TIGR01695 238 A 238 (502)
T ss_pred H
Confidence 3
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.77 E-value=7.7e-16 Score=149.41 Aligned_cols=230 Identities=17% Similarity=0.030 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~-~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
...|++.+...|.+++.....+...+|+.+.+.+.+-..+.+..+..+.+++..+ ..++++.+.|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 3469999999999999999999999999999999999999999999999998865 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC--ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~--d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~ 266 (350)
++..++++.++.++.+|.++++.+++++++.++++.. +++-.......+...+++.+++.+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999999999999999999996542 33445667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHH
Q 018778 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVM 345 (350)
Q Consensus 267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~ 345 (350)
+++.+++.++|+.+|++++ +.+|..|.++|+.++.++.+.++++..+|+..... ...|.... +.|+.+-..+|
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~~~~~~~~-~~k~~l~~~i~ 461 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---GRGWGLFL-ILKLLLASAIM 461 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhhHHH-HHHHHHHHHHH
Confidence 9999999999999997776 45688889999999999999988888777642211 34444444 45555554444
No 22
>PRK15099 O-antigen translocase; Provisional
Probab=99.74 E-value=5e-16 Score=150.25 Aligned_cols=224 Identities=11% Similarity=0.011 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 018778 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQI 192 (350)
Q Consensus 115 i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~-~~gl~~a~~~~~s~~~g~~~~~~~~~~~ 192 (350)
++|-+.......++..+.+.+-..++.| +|+++.+.+++...+..+...+ ..|++.+....++|+ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4566667777888888888888888888 5999999999999888877766 478888888888887 78889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 018778 193 SVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVV 272 (350)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~ 272 (350)
..++.+.++.+++++++.+++.+++...+++ |++ -..++.+..+..++..+.....+.+|+.||++.++...++
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFG--HTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998866 333 2356677777777888889999999999999999999999
Q ss_pred HHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--ccCCChHHHHHHHHHHHHHHHHHhh
Q 018778 273 ASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA--ISIPLPSELLAIFELAAPVFVMMMS 348 (350)
Q Consensus 273 ~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~l~~P~~i~~~s 348 (350)
+.++|+++ +++++. ..|+.|+++|+.+++.+..+..++++.|++..+.+ ..+++++.+|+++++|+|..+++++
T Consensus 155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~ 230 (416)
T PRK15099 155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVT 230 (416)
T ss_pred HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 444432 23999999999999999888777766554332222 2356788999999999999887754
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.74 E-value=1.3e-15 Score=147.48 Aligned_cols=199 Identities=14% Similarity=-0.024 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHhHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKN 186 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig-~~g~~~laa~~la~~~~~~~-~~~~~gl~~a~~~~~s~~~g~~~~~ 186 (350)
++.+|++++++.|.+++++...+...+|+.+++ ++|++++|+|+.+.++.+.. ..+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 445699999999999999999999999999997 68999999999999998754 677799999999999985 6778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~ 266 (350)
+.++..++.......+++++++++++++++++.++.+++ ++.+..++++++++..+...+......+.+.++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999899999999998832 4557889999999999988888888777788888888
Q ss_pred HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (350)
Q Consensus 267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~ 316 (350)
....+...+++++++++++ +.+|..|+++|+.+++.+..++......+
T Consensus 364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999988 56899999999999999998877655443
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.73 E-value=4.1e-15 Score=146.96 Aligned_cols=200 Identities=16% Similarity=0.047 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
+..|++++++.|.+.+.+...+...+|++++|++ |++++|.|+.+.++.+.+.... ..++....|..++. ++|+++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 4569999999999999999999999999999995 8999999999999988765544 55778888988885 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
.++.+++.......+++|+.+++.+++++++.++++++ +..+...+++++++..+..+......++++.|+++..+
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 99999999999999999999999999999999998842 67788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
+.+++..+++++..+++. ..+|+.|+++|+.+++.+.+++..++..|+
T Consensus 358 ~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887666555 457999999999999999988888877443
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.72 E-value=3.1e-15 Score=147.24 Aligned_cols=187 Identities=18% Similarity=0.161 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~ 187 (350)
++..|++++.++|..++.+...+.+.+|+++++++ |++++|.|+.+..+......+...++..+.|..++++.++|+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 45679999999999999999999999999999995 99999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
.++...+...+...+++|..++++++++++..++++++ +..+...+++++++.++..+.......+++.|+.+..+
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999999999999998854 23388899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHH
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMAS 302 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is 302 (350)
+...++.++|++++++++ +.+|+.|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999998 567899999999 44
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.51 E-value=1.3e-11 Score=120.65 Aligned_cols=202 Identities=14% Similarity=0.096 Sum_probs=169.5
Q ss_pred cC-hhhHhHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018778 143 GS-SLELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS 219 (350)
Q Consensus 143 ~g-~~~laa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~ 219 (350)
+| +.+.++|.++..+.+++..+. .++..+..|...+.. ++++++.++..++.+.+..++.+.++++.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 567889999999999987654 358999999999998 89999999999999999999999999999999999999
Q ss_pred HccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchh---HHHHH
Q 018778 220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG---IAGAA 296 (350)
Q Consensus 220 l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~G---i~Gaa 296 (350)
++....|++..+.+..+++++.+..++..+..++.++||++++...+....++..+.-++. +++.....| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~--~~~~~~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS--LLLLSNSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH--HHHHHHhcCchHHHHHH
Confidence 9976668899999999999999999999999999999999999999999888877765553 333334567 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778 297 WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (350)
Q Consensus 297 ~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~ 347 (350)
+|..++.++..++.+.+.+|.+.......+...++++++++...|..+...
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 212 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSS 212 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHH
Confidence 999999999999888888776543222223345678999999999887654
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.44 E-value=4.7e-12 Score=118.97 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
++..|+++++++|.+++.+...+...+|+.+++++|++++++|+.+.++.++...+..+++.+..|.+++++|++|++++
T Consensus 212 ~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (342)
T TIGR00797 212 WEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRA 291 (342)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR 240 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~ 240 (350)
++..++++.+.+++++++.++++++++++..++.+ |+++.+.+..++++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 292 KEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999965 789999999998764
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.26 E-value=1.8e-08 Score=98.41 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-hhHhHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHH
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS-LELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~-~~laa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
..++|-++-.....++.-+.+++-..+++. +|. ...+++.++.++-|+.--+. ..++++..|...++..+++.++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 445566666666666666667775555555 675 67889999999999987665 56899999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC-ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~-d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 267 (350)
++..+........+.+.+.++..++++++...+..+. |++....+....++..|..++..+..+..++||+.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 8888888877777788888888889999995554542 223333788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHH
Q 018778 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM 346 (350)
Q Consensus 268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~ 346 (350)
+.-++-.+.-+...+++..+...-..+.+|++.++-+...++.+..++|.+......+..+.+..|++.+...|..+..
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~ 245 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGV 245 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 8877777665544444443332247788999999999999999999888763333322334467888888888877653
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.21 E-value=2.4e-08 Score=90.13 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 018778 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (350)
Q Consensus 116 ~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 193 (350)
+|-+.-..+.+++..+.+.+-..++.| +|+++.|.+++...+.++...+. .|+..+....+++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455666778888888888888899998 59999999999999999888774 88888888777776432 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 018778 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (350)
Q Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~ 273 (350)
......++.++......+ +...++.+ +. ...+........++..+......++++.++.+......++.
T Consensus 80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL-----IASFFGNP---SL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHcCCc---hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444444333333322 22244332 22 22222222223357888889999999999999999999999
Q ss_pred HHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHhh
Q 018778 274 SAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMS 348 (350)
Q Consensus 274 ~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~s 348 (350)
.++..++..++++ .+.++.+..++..++..+..++..++.+|+.+ .++...+++.++++++.++|..+..+.
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLL 220 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHH
Confidence 8888776655554 34458899999999999998888887776542 333445588999999999999887653
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.16 E-value=1.5e-08 Score=100.24 Aligned_cols=215 Identities=9% Similarity=-0.004 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH 190 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~ 190 (350)
++..+-+....+..+...+.+.+...++.| +|+++.+.++.+..+..+...+. .|++.+.. |. .++++ +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----H
Confidence 456666777888888999999999999999 59999999999999988887766 67776552 22 12222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHH
Q 018778 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL 270 (350)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~ 270 (350)
.......+.++.++.+.++.+++++++..+++. ++ ...+++++.+..++..+.......++..++.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN---PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 344555666777777777777777777766533 23 34567888888888899999999999999999988888
Q ss_pred HHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778 271 VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (350)
Q Consensus 271 ~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~ 347 (350)
++..++..++..++++ .++|+.+..++..+++.+..++..+..++ ++.+ + .+.+++.+|++++.++|.....+
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~~~k~ll~~~~~~~~~~~ 221 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRP-A-LHFSLASVKPNLSFGAWQTAERI 221 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCc-c-ceecHHHHHHHHhhhHHHHHHHH
Confidence 8888777766655543 57899999999999998877655433322 2221 1 12456789999999999987653
No 31
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.14 E-value=8.7e-11 Score=114.62 Aligned_cols=209 Identities=14% Similarity=0.028 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g--~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~ 186 (350)
.+.++.++++++|..+..++++.+..+-....|.++ ..++++.++...+......+..+++.+.++.++..+|+++.+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 455689999999999999999999999999999997 468888888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (350)
Q Consensus 187 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~ 266 (350)
..+......+..++.+++..+.....+.+.+..+|. +|+|+.+......+++++...+.....++++..+|.|..+..
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift--~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g 400 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFT--NSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG 400 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence 999999999999999999999999989999999994 488999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778 267 LKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY 319 (350)
Q Consensus 267 ~~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~ 319 (350)
.++++.+. ++.+.+..++-+..++|..|.|++...+..+....+.....+.+|
T Consensus 401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW 454 (473)
T KOG1347|consen 401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW 454 (473)
T ss_pred EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence 98877766 555666666666678999999999999955555555555444443
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.88 E-value=3.3e-06 Score=75.33 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=128.2
Q ss_pred HHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIF 209 (350)
Q Consensus 132 ~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 209 (350)
.+++-..++.| +|+++.|.++....+..+...+. .|+..... + ..++++++.++..+..+....++++.+.++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888 69999999999998888877764 55544443 3 345667777777776665555555444443
Q ss_pred HHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhc
Q 018778 210 TKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG 289 (350)
Q Consensus 210 ~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~ 289 (350)
.. .+..++ + + .....++.+..+..++..+......++++.++.+......++..++.+++..++. ..+
T Consensus 78 ~~----~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 145 (251)
T PF13440_consen 78 AI----LIAYFF-G--D----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLL-YLG 145 (251)
T ss_pred HH----HHHHHh-C--C----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 22 222233 3 1 2233456677788889999999999999999999999999999888844444443 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778 290 YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (350)
Q Consensus 290 ~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~ 347 (350)
.++.+..++..++.++..+..+...+++ .+.+ +..+.. +..+.+.|..+..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~-~~~~~~~~~~~~~~ 197 (251)
T PF13440_consen 146 LNLWSILLAFIISALLALLISFYLLRRK--LRLS---FKFSWR-RLLKYGLPFSLSSL 197 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc--cCCC---chhhHH-HHHHHHHHHHHHHH
Confidence 5888999999999988777666543322 1111 122222 36788888776654
No 33
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.86 E-value=5.3e-08 Score=79.97 Aligned_cols=80 Identities=25% Similarity=0.197 Sum_probs=75.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778 237 VQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (350)
Q Consensus 237 l~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~ 316 (350)
+++++++.++..+.......+++.||++..++..+++.++|++++++++ +.+|..|+++|+.+++++.+++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999996 68899999999999999999999888887
Q ss_pred cc
Q 018778 317 KG 318 (350)
Q Consensus 317 ~~ 318 (350)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 64
No 34
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.75 E-value=2.2e-06 Score=84.46 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH 190 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~ 190 (350)
+++.+-+.-..+..+...+...+....+.| +|+++.+.++.+..+..+...+. .|+..+....++++...+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~ 85 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLIL 85 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHH
Confidence 677788888889999999999999999999 69999999999999999998887 8999999999998876666665555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778 191 Q-ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (350)
Q Consensus 191 ~-~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 269 (350)
. ....+.+.+..+++.........+. . ......+++..++.++........+++|+.++.+.....
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 86 LSVLLLLLLALILLLLLLLIAYLLAPI------D-------PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------C-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5 4544444444444444433322111 1 223456778899999999999999999999999999888
Q ss_pred HHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh-hccCccccccCCChHHHHHHHHHHHHHHHHHhh
Q 018778 270 LVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLN-QKGYNAFAISIPLPSELLAIFELAAPVFVMMMS 348 (350)
Q Consensus 270 ~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~s 348 (350)
.+.. ..-+...+.+. .....++.++..++..........+.. ++++......+..++.+++.++.++|..+..+.
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHH
Confidence 4444 11111111111 134556666667776666555555543 232222232333478999999999999877653
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.51 E-value=0.0002 Score=65.06 Aligned_cols=228 Identities=12% Similarity=0.044 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---hhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS---SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 112 ~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g---~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
++++.++-+|+.++.+...+...+-+.-+.+-. .+.+|+|+++..+.-++..+...+-.....+ +.+++++.
T Consensus 10 y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~-----V~s~rsrr 84 (345)
T PF07260_consen 10 YWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVF-----VNSKRSRR 84 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH-----hcchhhhH
Confidence 478999999999999999888888888887743 3459999999999988887776555544433 33322222
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778 189 QHQISVLLFVGLACG--FSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~ 266 (350)
..-.+.....++. +...+.+-.++..++.-+++- ++++.+.+...+.++.+-.++..+....++++-=.+++...
T Consensus 85 --~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV-s~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 85 --KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV-SPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 1222222222111 112222334456665555444 67999999999999999999999999999998866666655
Q ss_pred HHHHHHHHHHHhHhhHHHHhh-------hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHH
Q 018778 267 LKALVVASAVNGIGDIVLCRF-------LGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELA 339 (350)
Q Consensus 267 ~~~~~~~~~lni~l~~ili~~-------~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~ 339 (350)
...++...+..+++..+++.. ...|+.|...+..+-....++.++.-+........+..+.+...++++++..
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 555555454444433344311 1134444333333322222221111222221111222344567889999999
Q ss_pred HHHHHHHh
Q 018778 340 APVFVMMM 347 (350)
Q Consensus 340 ~P~~i~~~ 347 (350)
+|.+..+.
T Consensus 242 ~PL~~~~~ 249 (345)
T PF07260_consen 242 WPLALVLA 249 (345)
T ss_pred HHHHHHHH
Confidence 99987654
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.45 E-value=1.7e-05 Score=78.90 Aligned_cols=202 Identities=14% Similarity=0.096 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccCC----
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ--G-SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRD---- 184 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~--~-g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~~~g~~~---- 184 (350)
+++++++...+.+.++-.+.+--|.+++.. + ..++.|.|++++.+-.++. .++.-+=-..-...++....++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 789999999999999999999999999999 5 5788999998887777654 3334455555556666654432
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 018778 185 -----KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLG 259 (350)
Q Consensus 185 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~ 259 (350)
.++..+.+...+++...+|+.+..+....++.++.++++++ =....+...+++.+..+|+.++|.+.-++.++
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 24567788888889999998888888888999999988752 22233577899999999999999999999998
Q ss_pred CCCChHHH---HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 260 MKDSWGPL---KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 260 ~g~~~~~~---~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
....+... ...++..++.+..+|+|+.. ++|..|..+|.++++.+..+..++++++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87655544 34566667778888998866 78999999999999999999888887653
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.0022 Score=60.99 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccC---CH
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQG---SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNR---DK 185 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~---g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~~~g~~---~~ 185 (350)
+++.+...-.+-..++-.+.+--|.+++.-. +-++.|.|.+.+..-.+.. .++.-+--......+|....+ |.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 6677777888888888888888899988853 3345555654443333322 222334444444555555444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChH
Q 018778 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (350)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~ 265 (350)
++...++...+.....+|+.+..+....++.++.+.+|++ =....+...+++.++.+|+.++|.+.-+++++.+..+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 5556677777888888887777777778889999998863 22233457899999999999999999999998876665
Q ss_pred HHH---HHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 266 PLK---ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 266 ~~~---~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
.-. ..++..++.++++|+++-. +|..|..+|..+...+.-+....++++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 4566667788899999864 4779999999999888877776666553
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.38 E-value=0.0016 Score=58.48 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSL 180 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~ 180 (350)
++..|++++.+.|..++.+...+...+|.++++++ |++++|.|+.+.++......+...+.....|..++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56679999999999999999999999999999995 8999999999999999999999999999999998863
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.26 E-value=0.035 Score=49.13 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 018778 114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVAT 178 (350)
Q Consensus 114 ~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~ 178 (350)
++++.+.|..+..++..+...+|.++++. +|.+++|.|+.+.++...+. .+..+++....|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999 79999999999999999888 7789999999998876
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=92.05 E-value=11 Score=35.71 Aligned_cols=134 Identities=7% Similarity=0.036 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhH
Q 018778 165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAW 244 (350)
Q Consensus 165 ~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~ 244 (350)
..|+....+-.+|...=+|+.+++..-+--...++...+..++.+. -..+. +. ...|=...+...
T Consensus 77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v--------f~~~~--~~-----si~yk~l~~~~F 141 (467)
T COG4267 77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV--------FFVNN--QY-----SIVYKILACALF 141 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh--------hhhcC--ch-----hHHHHHHHHHHH
Confidence 3567777777777777777777766555444444444433333211 11111 11 123333445566
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778 245 PAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (350)
Q Consensus 245 ~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~ 316 (350)
...+..++...++.++++.+.....-.++.++...+..++- ++++.|..++..++..+...+...++.|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66777888889999999999999999999999888777665 5689999999999999988888877755
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=90.97 E-value=11 Score=35.79 Aligned_cols=118 Identities=12% Similarity=-0.039 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCh
Q 018778 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW 264 (350)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~ 264 (350)
.++....+++.+.-..-+-...++.+.++++.++.+++-+ +.--+..++-.++.-++.....+-.+.-=..+-+
T Consensus 319 ~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS------~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 319 LKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLS------EYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555555555566667777788999999999662 3333445555555555555444444444455566
Q ss_pred HHHHHHHHHHHHHhHhhHHHHh-hhchhHHHHHHHHHHHHHHHHH
Q 018778 265 GPLKALVVASAVNGIGDIVLCR-FLGYGIAGAAWATMASQVIAAY 308 (350)
Q Consensus 265 ~~~~~~~~~~~lni~l~~ili~-~~~~Gi~Gaa~A~~is~~~~~~ 308 (350)
..+.....-.+.|.++.+++.- ++++--.|..+|..+.-.+...
T Consensus 393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~ 437 (467)
T COG4267 393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK 437 (467)
T ss_pred hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence 6666677777888888887763 3444445566666555444433
No 42
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=66.38 E-value=1.2e+02 Score=28.91 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Q 018778 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221 (350)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~ 221 (350)
.+.++.+++++++...+.+......++.....-|+...-
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999988888887877877744
No 43
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=55.14 E-value=94 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778 291 GIAGAAWATMASQVIAAYMMIINLNQ 316 (350)
Q Consensus 291 Gi~Gaa~A~~is~~~~~~~~~~~~~~ 316 (350)
++.|...+..+++++.+++...|..+
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 44577788899999998888887655
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=43.57 E-value=3.6e+02 Score=27.27 Aligned_cols=56 Identities=11% Similarity=-0.074 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHH-HHH-HHHHHHHH
Q 018778 118 FTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIF-MFLSIATS 173 (350)
Q Consensus 118 ~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~-~~~-~gl~~a~~ 173 (350)
-+.-.++.+++.-+.+++-+.++=| .+++.+|..++=..+...+. ++. -++=.|+.
T Consensus 6 gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~l 64 (549)
T PF04506_consen 6 GASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACL 64 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777775555544 68887777654333332222 222 44544444
No 45
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=39.28 E-value=1.9e+02 Score=26.37 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCH
Q 018778 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ------GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDK 185 (350)
Q Consensus 113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~------~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~ 185 (350)
|--+-++.|.++..+=|.++-...+..++. +|.+.+.+.+-...-..+...+. ..++..++ .+.|++|.+..
T Consensus 203 kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~ldig~g~~aGlaIVilAIiLD-Ritq~~~~~~~ 281 (290)
T COG4176 203 KVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQRLDIGLGFEAGLAIVILAIILD-RLTQAFGRKAK 281 (290)
T ss_pred HhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhhhHHHHhhhHHHHHHHHHHH-HHHHHhccccc
Confidence 556667888888888888887777776655 35555555553333333333333 34455555 56888888755
Q ss_pred HHH
Q 018778 186 NEV 188 (350)
Q Consensus 186 ~~~ 188 (350)
++.
T Consensus 282 ~~~ 284 (290)
T COG4176 282 SRH 284 (290)
T ss_pred ccc
Confidence 443
No 46
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=38.72 E-value=2.8e+02 Score=24.56 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhcc--CCHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHH-----HccCCCccchHHH-HHH
Q 018778 166 MFLSIATSNLVATSLTN--RDKNE-VQHQI-SVLLFVGLACGFSMLIFTKFFGMQALS-----AFTGSKNVHILPA-ANK 235 (350)
Q Consensus 166 ~gl~~a~~~~~s~~~g~--~~~~~-~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~il~-----l~~~~~d~~v~~~-a~~ 235 (350)
.....++.....+.++. ++.+. .++.. .-.+.+...+.+.+......+.+.+.. .++. +.+..+. ...
T Consensus 85 ~~~~~~l~~a~~~i~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 162 (260)
T PF03631_consen 85 SSFFASLQRALNRIYGVPPRERRSFWKRRLIALLFLIILGVLLILSLALSVFLPSVLQFIILPFLGL--LSEISTWFLWN 162 (260)
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--hhhhhHHHHHH
Confidence 33445555566677776 43322 22222 222222233333333333444554443 2322 1122222 244
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhh--------chhHHHHHHHHHHHH
Q 018778 236 YVQIRG-LAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFL--------GYGIAGAAWATMASQ 303 (350)
Q Consensus 236 yl~i~~-~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~--------~~Gi~Gaa~A~~is~ 303 (350)
..++.. ....+..+..++.-.-+..-+.+......+++.++-.++.+.+.++. -||..|..+...+--
T Consensus 163 ~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~~~~~~YG~l~~li~~Llwl 239 (260)
T PF03631_consen 163 LIRWLVSFLLLFLLFFLLYRFLPNRRVRWRAALPGALFAAVLWFLLSYGFSLYLSYVSSYSSVYGSLGSLIILLLWL 239 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH
Confidence 445532 23333334444444444444555555556666655555555554332 255555555544443
No 47
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=37.12 E-value=2.3e+02 Score=23.11 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 184 DKNEVQHQISVLLFVGLACGFSMLIFTK 211 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 211 (350)
+.++-++..++...+++.+++++.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777766554
No 48
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=36.78 E-value=4e+02 Score=25.79 Aligned_cols=24 Identities=8% Similarity=-0.144 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 018778 119 TGPATGLWICGPLMSLIDTAVIGQ 142 (350)
Q Consensus 119 ~~P~~l~~i~~~~~~~i~~~~ig~ 142 (350)
-+..+....+.+....+|+..++-
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~ 50 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKA 50 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhh
Confidence 333444444555555555554444
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=36.71 E-value=1.6e+02 Score=21.28 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 168 LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFT 210 (350)
Q Consensus 168 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 210 (350)
++...+..+-..+.+||+++.++.-+++-.++.+ ++.+++++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~i-a~~~g~~~ 77 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSII-AIIIGIVI 77 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHH-HHHHHHHH
Confidence 4555556677888899999998877777665544 33334333
No 50
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=34.81 E-value=5.7e+02 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhccC
Q 018778 166 MFLSIATSNLVATSLTNR 183 (350)
Q Consensus 166 ~gl~~a~~~~~s~~~g~~ 183 (350)
..++.-....++..+|++
T Consensus 215 ~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 215 MMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHhCcH
Confidence 444544555556666544
No 51
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=34.54 E-value=1.1e+02 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778 294 GAAWATMASQVIAAYMMIINLNQKGY 319 (350)
Q Consensus 294 Gaa~A~~is~~~~~~~~~~~~~~~~~ 319 (350)
|.+++..+. ++.+++.+++++||+|
T Consensus 293 gy~~~l~~m-~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 293 GYPAVLIVM-AVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 433333333 3334456677777765
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.24 E-value=2.1e+02 Score=25.23 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc
Q 018778 182 NRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222 (350)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~ 222 (350)
.++++.....+.+++...+++.+++++++. ++.++..+|+
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt-~g~d~m~fl~ 179 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVMT-IGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hcccchhhhh
Confidence 345566666666666666665555555554 4555556654
No 53
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.50 E-value=80 Score=24.97 Aligned_cols=8 Identities=0% Similarity=0.032 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 018778 310 MIINLNQK 317 (350)
Q Consensus 310 ~~~~~~~~ 317 (350)
..++++|+
T Consensus 84 i~y~irR~ 91 (122)
T PF01102_consen 84 ISYCIRRL 91 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334433
No 54
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.61 E-value=2.7e+02 Score=22.28 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 018778 193 SVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVV 272 (350)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~ 272 (350)
.....+.+.+.++.++. .+...-+.+++|-+-| ......--.+....++.|+..+..++...+.-.+.++.. ....
T Consensus 5 ~~~i~~~l~~~~v~a~~-ff~~~gif~L~Gi~Y~-S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l 80 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIY-FFVMVGIFHLLGIEYE-SVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILL 80 (132)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHH
Confidence 33444455555555543 4466778888877532 344444455566677888888888888777766444433 3345
Q ss_pred HHHHHhHhhHHHHhhhchhHHHHHHHHH
Q 018778 273 ASAVNGIGDIVLCRFLGYGIAGAAWATM 300 (350)
Q Consensus 273 ~~~lni~l~~ili~~~~~Gi~Gaa~A~~ 300 (350)
...+....+++.++.-+.=+.+..+.+.
T Consensus 81 ~~~id~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 81 AFIIDFLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeCcH
Confidence 5667777777777766654455444433
No 55
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=29.64 E-value=3.4e+02 Score=22.81 Aligned_cols=39 Identities=23% Similarity=0.020 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHHHhHhhHHHHhh-hchhHHHHHHHH
Q 018778 261 KDSWGPLKALVVASAVNGIGDIVLCRF-LGYGIAGAAWAT 299 (350)
Q Consensus 261 g~~~~~~~~~~~~~~lni~l~~ili~~-~~~Gi~Gaa~A~ 299 (350)
.|.......-.+...++++.+.+...+ +++|..|...+.
T Consensus 96 ~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~ai 135 (177)
T PF04144_consen 96 TDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITAI 135 (177)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 444455555666777777777666654 567877766665
No 56
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=27.47 E-value=1.1e+02 Score=26.67 Aligned_cols=23 Identities=4% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 018778 161 MSYIFMFLSIATSNLVATSLTNR 183 (350)
Q Consensus 161 ~~~~~~gl~~a~~~~~s~~~g~~ 183 (350)
+..+.++++.++.+++++.+|++
T Consensus 118 ~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 118 AGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHHhhHHHHHhCcccCcc
Confidence 33445889999999999999985
No 57
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=26.32 E-value=5.4e+02 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 018778 165 FMFLSIATSNLVATSLTNRDKNEVQHQISV 194 (350)
Q Consensus 165 ~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~ 194 (350)
..+++....|-.-.-.|-.|..-.+..+-.
T Consensus 14 g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~ 43 (356)
T COG4956 14 GAVLGFAVIPELLADLGIQDTAFLNNEYVD 43 (356)
T ss_pred HhhhhHhhHHHHHhhcCcccchhhccHHHH
Confidence 345566666555555555555444443333
No 58
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=23.75 E-value=5.5e+02 Score=23.26 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHccCCCcc
Q 018778 152 GPGTVLCDNMSYI---FMFLSIATSNLVATSLTNRDKNEVQHQISV-LLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV 227 (350)
Q Consensus 152 ~la~~~~~~~~~~---~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~ 227 (350)
+++.++..+...+ ...+........-++..++|++++++.-.- .....+...++..+..+ ++...++.+-.
T Consensus 97 alAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~-~G~~~v~~il~---- 171 (265)
T TIGR00822 97 ALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVAL-VSQSAVQAMLK---- 171 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHH----
Confidence 3444444443333 222334444444455566788887554322 23333334444433333 44444443311
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018778 228 HILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (350)
Q Consensus 228 ~v~~~a~~yl~i~~~~~~~~~~~~~~~~~ 256 (350)
.+-+.-..-+.+..-.+|...+..+++-+
T Consensus 172 ~iP~~v~~Gl~vaggmLPAvGfAmLl~~m 200 (265)
T TIGR00822 172 AIPEVVTHGLQIAGGIIVVVGYAMVLRMM 200 (265)
T ss_pred HCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11122223344455556666666655543
No 59
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=23.60 E-value=2.8e+02 Score=25.99 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-Ch----hhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Q 018778 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-G-SS----LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR-D 184 (350)
Q Consensus 112 ~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~-g~----~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~-~ 184 (350)
++.++++.+|..+....+.+..-+-+.+++| + |+ +++|..+..++.--....... -+- .+..++.++ +
T Consensus 234 l~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~----~~r-~~~paf~~~~~ 308 (345)
T PF07260_consen 234 LQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLT----ELR-AVYPAFDKNNP 308 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHH----hHH-hhCchhhccCc
Confidence 5899999999999999999999999999999 4 43 445554444443333222221 111 112222121 1
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 018778 185 KNEV--------QHQISVLLFVGLACGFSMLIFTK 211 (350)
Q Consensus 185 ~~~~--------~~~~~~~~~~~~~~~i~~~~~~~ 211 (350)
.+++ +..+++....++++++.++..++
T Consensus 309 ~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 309 QNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred ccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122 33677777777777766665543
No 60
>PF13321 DUF4084: Domain of unknown function (DUF4084)
Probab=23.23 E-value=2.8e+02 Score=24.60 Aligned_cols=54 Identities=7% Similarity=-0.071 Sum_probs=41.6
Q ss_pred ccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 018778 221 FTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS 274 (350)
Q Consensus 221 ~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~ 274 (350)
++.++|.++.+.+..++.+++.-+-+.+...+.++.-++....+........+.
T Consensus 23 lf~~~~~~i~~~~ilfL~~~Atl~s~~~l~~~~kk~~r~n~~fw~lll~tcLcg 76 (304)
T PF13321_consen 23 LFIPTSDDIKEIGILFLFCFATLFSCTCLYKAIKKMKRRNKLFWPLLLCTCLCG 76 (304)
T ss_pred eEcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeHHHHHHHHHH
Confidence 345667899999999999999999999998888887776666666555544444
No 61
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.11 E-value=1.7e+02 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778 294 GAAWATMASQVIAAYMMIINLNQKGY 319 (350)
Q Consensus 294 Gaa~A~~is~~~~~~~~~~~~~~~~~ 319 (350)
|.++...+ .++.++..+++++|++|
T Consensus 299 gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 299 GFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 44433333 33444455566777655
No 62
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=22.49 E-value=3.5e+02 Score=22.21 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 018778 195 LLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA 253 (350)
Q Consensus 195 ~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~ 253 (350)
.+..+.+.++.+.++ ....+.+-..|+..+ -....++..+..+.....+.++.
T Consensus 127 ~l~~~~~~~~~l~~~-i~~~P~~~~~f~~~~-----l~~~~w~~~l~~~~~~~~~~ei~ 179 (182)
T PF00689_consen 127 WLLIAILISIALQIL-IVYVPGLNRIFGTAP-----LPLWQWLICLALALLPFIVDEIR 179 (182)
T ss_dssp HHHHHHHHHHHHHHH-HHHSTTHHHHST---------THHHHHCHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-HhcchhhHhhhcccC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333 335556667664421 12334445555555555555443
No 63
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.14 E-value=7.8e+02 Score=24.44 Aligned_cols=183 Identities=13% Similarity=-0.072 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccChhhHhHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 018778 117 KFTGPATGLWICGPLMSLI-DTAVIGQGSSLELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (350)
Q Consensus 117 ~~~~P~~l~~i~~~~~~~i-~~~~ig~~g~~~laa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~~~~ 193 (350)
+.+.-.+..+++.-+.+++ +.+.+-+.+++.+|..++=..+..-...+. -++--|....-++ ++++..+..+..+
T Consensus 12 ~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~--~~d~~te~~n~~w 89 (530)
T KOG2864|consen 12 SGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSE--PADTWTEFINLLW 89 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCC--CCccHHHHHHhhh
Confidence 3444445555555555544 555566679888887765444443333222 2333333222111 2234556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 018778 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (350)
Q Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~ 273 (350)
.+..+..+..+++..+++-+....-.... ...-..-+.+...++..-.+.+.+.-..|..-+.+.-....-++
T Consensus 90 lS~~L~~~i~~~~i~~wl~~~~s~d~i~~-------~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~ 162 (530)
T KOG2864|consen 90 LSVPLQTAINVACIYFWLGFLSSSDEISY-------SPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLA 162 (530)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccchhhc-------CchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHH
Confidence 66666666666665554432221111100 11111112222233332333333333334444444445555555
Q ss_pred HHHHhHhhHHH-Hhh-hchhHHHHHHHHHHHHHHHHH
Q 018778 274 SAVNGIGDIVL-CRF-LGYGIAGAAWATMASQVIAAY 308 (350)
Q Consensus 274 ~~lni~l~~il-i~~-~~~Gi~Gaa~A~~is~~~~~~ 308 (350)
.++..+.++.. +.+ ..+++.--|+|.....+...+
T Consensus 163 ~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l 199 (530)
T KOG2864|consen 163 TIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLL 199 (530)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHH
Confidence 55553333222 222 235666666666665555554
No 64
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=20.05 E-value=6.2e+02 Score=22.45 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 018778 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (350)
Q Consensus 107 ~~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~ 185 (350)
+..++.+.+-+...|..++.+...+...+..+.+++ +|-+..-..+ ...-.+.+...--+++..|.. .
T Consensus 81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~S----------l~pKSVTtPIAm~is~~iGG~-p 149 (232)
T PRK04288 81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMAS----------MLPQAATTAIALPVSAGIGGI-K 149 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH----------HhhHhhhHHHHHHHHHHhCCc-H
Confidence 455666788889999999999999999999999998 4633322222 112233333344456666543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHH
Q 018778 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLT 249 (350)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~ 249 (350)
. +...+.+..+++...+++++++++.-.+ ...+=++++.-...+
T Consensus 150 s-----------LtA~~ViitGi~Gai~g~~llk~~~I~~---------~~a~GlalG~asHai 193 (232)
T PRK04288 150 E-----------ITSFAVIFNAVIIYALGAKFLKLFRIKN---------PIAKGLALGTSGHAL 193 (232)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHcCCCC---------HHHHHHHHhHHHHHH
Confidence 1 2233334445555668999999997642 233445555555544
No 65
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.01 E-value=1.4e+02 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778 294 GAAWATMASQVIAAYMMIINLNQKGY 319 (350)
Q Consensus 294 Gaa~A~~is~~~~~~~~~~~~~~~~~ 319 (350)
|.+++..+. ++.+++.+++++|++|
T Consensus 297 Gy~~~l~~m-~~~~~~~~~~frrk~W 321 (322)
T COG0598 297 GYPIALILM-LLLALLLYLYFRRKGW 321 (322)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHhcCc
Confidence 555554444 3444555666777765
Done!