Query 018778
Match_columns 350
No_of_seqs 252 out of 1645
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 1.5E-26 5E-31 224.1 16.3 238 109-349 8-254 (460)
2 3mkt_A Multi antimicrobial ext 99.9 9.6E-23 3.3E-27 197.2 21.4 206 110-317 235-446 (460)
3 2k1k_A Ephrin type-A receptor 42.2 37 0.0013 19.9 3.7 22 292-313 13-34 (38)
4 2jwa_A Receptor tyrosine-prote 28.7 1E+02 0.0035 18.7 4.3 10 309-318 30-39 (44)
5 2l2t_A Receptor tyrosine-prote 27.8 1.1E+02 0.0036 18.6 4.7 7 311-317 31-37 (44)
6 2ks1_B Epidermal growth factor 26.0 95 0.0032 18.8 3.7 8 310-317 31-38 (44)
7 4ev6_A Magnesium transport pro 15.8 1.6E+02 0.0055 26.1 4.8 25 294-319 314-338 (339)
8 2iub_A CORA, divalent cation t 13.2 86 0.003 28.3 2.2 16 304-319 347-362 (363)
9 4hkr_A Calcium release-activat 9.1 7.9E+02 0.027 20.2 11.2 77 144-221 56-140 (214)
10 1pw4_A Glycerol-3-phosphate tr 8.3 9.9E+02 0.034 20.8 17.9 21 290-310 410-430 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.94 E-value=1.5e-26 Score=224.10 Aligned_cols=238 Identities=16% Similarity=0.134 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (350)
Q Consensus 109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~ 188 (350)
++..|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 34569999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHH
Q 018778 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (350)
Q Consensus 189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 268 (350)
++.+++++.+.+++++++.++ ++++++++.+++. |+++.+.+..|+++++++.++..+..+..+++|+.|+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999998876 6688999998866 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cc----cccCCChHHHHHHHHHH
Q 018778 269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-AF----AISIPLPSELLAIFELA 339 (350)
Q Consensus 269 ~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~il~l~ 339 (350)
..+++.++|++++++++.. +++|+.|+++|+.+++++..++.++++++++.. +. ++.+++++.+++++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 379999999999999999999888887765432 21 22356778999999999
Q ss_pred HHHHHHHhhc
Q 018778 340 APVFVMMMSK 349 (350)
Q Consensus 340 ~P~~i~~~s~ 349 (350)
+|.+++.+.+
T Consensus 245 ~p~~~~~~~~ 254 (460)
T 3mkt_A 245 FPVAAALFFE 254 (460)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999887653
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.90 E-value=9.6e-23 Score=197.23 Aligned_cols=206 Identities=16% Similarity=0.083 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (350)
Q Consensus 110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~ 189 (350)
+.+|+++++++|.+++.+...+...+|+.+++++|++++|+|+++.++.++...+..+++.+..|.+++++|++|+++++
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~ 314 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAA 314 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (350)
Q Consensus 190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 269 (350)
+..+++..+.+.++++++++++++++++..++.+ |+++.+.+..++++++++.++..++.+..+++++.||++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 315 IAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999999999999999965 67899999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHhHhhHHHHhh----hc-hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778 270 LVVAS-AVNGIGDIVLCRF----LG-YGIAGAAWATMASQVIAAYMMIINLNQK 317 (350)
Q Consensus 270 ~~~~~-~lni~l~~ili~~----~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~ 317 (350)
.+++. ++|++++++++.. ++ +|+.|+++|+.+++++.+++..++++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999876 56 9999999999999999988877666554
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.15 E-value=37 Score=19.90 Aligned_cols=22 Identities=5% Similarity=0.224 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018778 292 IAGAAWATMASQVIAAYMMIIN 313 (350)
Q Consensus 292 i~Gaa~A~~is~~~~~~~~~~~ 313 (350)
+.|+.++.++.-.+...+.+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 4556666555555444444333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.73 E-value=1e+02 Score=18.72 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=4.6
Q ss_pred HHHHHHhhcc
Q 018778 309 MMIINLNQKG 318 (350)
Q Consensus 309 ~~~~~~~~~~ 318 (350)
....|++|++
T Consensus 30 ~~~~~~RRR~ 39 (44)
T 2jwa_A 30 VFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHC
T ss_pred HHHhheehhh
Confidence 3344555543
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.75 E-value=1.1e+02 Score=18.63 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHhhc
Q 018778 311 IINLNQK 317 (350)
Q Consensus 311 ~~~~~~~ 317 (350)
++|++|+
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.99 E-value=95 Score=18.82 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.4
Q ss_pred HHHHHhhc
Q 018778 310 MIINLNQK 317 (350)
Q Consensus 310 ~~~~~~~~ 317 (350)
.++|++|+
T Consensus 31 ~~~~~RRr 38 (44)
T 2ks1_B 31 IGLFMRRR 38 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33444444
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=15.79 E-value=1.6e+02 Score=26.12 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778 294 GAAWATMASQVIAAYMMIINLNQKGY 319 (350)
Q Consensus 294 Gaa~A~~is~~~~~~~~~~~~~~~~~ 319 (350)
|.+++..+ .++.+++.+++++||+|
T Consensus 314 gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 314 GFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 44444443 34445556677777766
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=13.20 E-value=86 Score=28.30 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhccC
Q 018778 304 VIAAYMMIINLNQKGY 319 (350)
Q Consensus 304 ~~~~~~~~~~~~~~~~ 319 (350)
++.+++.+++++||+|
T Consensus 347 ~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 347 GVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHccc
Confidence 3444455566666655
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=9.06 E-value=7.9e+02 Score=20.20 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=42.7
Q ss_pred ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018778 144 SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATS--------LTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGM 215 (350)
Q Consensus 144 g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 215 (350)
...-+.+|+....+.-.+..+..-+++.+.|-+-.. ....-.++.+.++.....++..+|+++.+.-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344577777766666555555565666665543322 123456677888888888888877776655543333
Q ss_pred HHHHHc
Q 018778 216 QALSAF 221 (350)
Q Consensus 216 ~il~l~ 221 (350)
| ++++
T Consensus 136 W-VKF~ 140 (214)
T 4hkr_A 136 W-VKFY 140 (214)
T ss_dssp H-HHHT
T ss_pred e-EEee
Confidence 3 3455
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=8.26 E-value=9.9e+02 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 018778 290 YGIAGAAWATMASQVIAAYMM 310 (350)
Q Consensus 290 ~Gi~Gaa~A~~is~~~~~~~~ 310 (350)
.|.....+...+..++..++.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 354444444444444444333
Done!