Query 018778
Match_columns 350
No_of_seqs 252 out of 1645
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 05:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 21.4 1.8E+02 0.013 22.8 14.6 25 290-314 376-400 (417)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 18.2 1.3E+02 0.0092 19.8 6.5 16 330-345 68-83 (100)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 14.4 2.8E+02 0.021 22.1 21.2 26 289-314 406-431 (447)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.9 2.2E+02 0.016 18.8 6.4 16 330-345 74-89 (107)
5 d2yvxa3 f.57.1.1 (A:276-448) M 5.9 4.8E+02 0.035 18.7 8.7 43 168-210 55-99 (173)
6 d3cx5c2 f.21.1.2 (C:1-261) Mit 5.1 6.5E+02 0.047 19.3 12.6 69 241-309 86-155 (261)
7 d1nkzb_ f.3.1.1 (B:) Light-har 4.3 3.2E+02 0.023 14.6 3.2 29 185-213 8-36 (41)
8 d1u61a_ a.149.1.1 (A:) Hypothe 3.6 6E+02 0.044 16.8 5.0 29 168-196 94-122 (127)
9 d1oedb_ f.36.1.1 (B:) Acetylch 2.9 5.6E+02 0.041 18.8 4.0 25 184-208 211-235 (250)
10 d1q90b_ f.21.1.2 (B:) Cytochro 2.7 9.7E+02 0.071 17.5 11.8 68 241-308 87-155 (212)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.43 E-value=1.8e+02 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 290 YGIAGAAWATMASQVIAAYMMIINL 314 (350)
Q Consensus 290 ~Gi~Gaa~A~~is~~~~~~~~~~~~ 314 (350)
+|.....+...+-..+..++.++.+
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555544443333333333333333
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.25 E-value=1.3e+02 Score=19.77 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018778 330 SELLAIFELAAPVFVM 345 (350)
Q Consensus 330 ~~~~~il~l~~P~~i~ 345 (350)
....++....+|..+-
T Consensus 68 n~~LEiiWTviP~lIL 83 (100)
T d3dtub2 68 NSPLEIAWTIVPIVIL 83 (100)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3456777777776653
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.39 E-value=2.8e+02 Score=22.09 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 289 GYGIAGAAWATMASQVIAAYMMIINL 314 (350)
Q Consensus 289 ~~Gi~Gaa~A~~is~~~~~~~~~~~~ 314 (350)
.+|..+..+......++..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444443
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.86 E-value=2.2e+02 Score=18.77 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018778 330 SELLAIFELAAPVFVM 345 (350)
Q Consensus 330 ~~~~~il~l~~P~~i~ 345 (350)
....++...-+|..+-
T Consensus 74 n~~lEi~WTviP~lIL 89 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLIL 89 (107)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3456677776676543
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.88 E-value=4.8e+02 Score=18.71 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 168 LSIATSNLVATSLTNR--DKNEVQHQISVLLFVGLACGFSMLIFT 210 (350)
Q Consensus 168 l~~a~~~~~s~~~g~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 210 (350)
.+.-..+.+-|+++.+ +.++.++.+.+=+..+++.++.++++.
T Consensus 55 ~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 55 TGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp HHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666554 555677777777778888877776654
No 6
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.06 E-value=6.5e+02 Score=19.31 Aligned_cols=69 Identities=17% Similarity=0.033 Sum_probs=43.6
Q ss_pred HHhHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 018778 241 GLAWPAVLTGWVAQSASLGMK-DSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYM 309 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~ 309 (350)
+-.+.+...-.+.+.++.|.= +.+...+..-+...+-+...-++-+.+.+|-.+.+-++++.++...+-
T Consensus 86 a~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 86 ASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 334455556677777777654 456666665444444444445555566778888888888888766553
No 7
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.26 E-value=3.2e+02 Score=14.61 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018778 185 KNEVQHQISVLLFVGLACGFSMLIFTKFF 213 (350)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 213 (350)
-+++.++...+.++.+.++++.=++.+..
T Consensus 8 aEElHk~vIdGtRvF~~iA~~AH~La~~~ 36 (41)
T d1nkzb_ 8 SEELHKYVIDGTRVFLGLALVAHFLAFSA 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 35667777777777666665554444433
No 8
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=3.62 E-value=6e+02 Score=16.85 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018778 168 LSIATSNLVATSLTNRDKNEVQHQISVLL 196 (350)
Q Consensus 168 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~ 196 (350)
++.++..+++..|=.++++++..++.+.+
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~ 122 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAI 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888888998887788888888887754
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.86 E-value=5.6e+02 Score=18.81 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778 184 DKNEVQHQISVLLFVGLACGFSMLI 208 (350)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~~~ 208 (350)
+++.+...+-+.+.+.+++.++++.
T Consensus 211 EW~~vA~VlDRlfl~lF~l~~vi~t 235 (250)
T d1oedb_ 211 DWQYVAMVADRLFLYVFFVICSIGT 235 (250)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655555444433
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.71 E-value=9.7e+02 Score=17.53 Aligned_cols=68 Identities=16% Similarity=-0.081 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 018778 241 GLAWPAVLTGWVAQSASLGM-KDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAY 308 (350)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~ 308 (350)
+-.+.+...-.+.+.++.|. ++++...+..-+...+-....-+.-+.+.+|-.+.+-++++.++...+
T Consensus 87 As~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~i 155 (212)
T d1q90b_ 87 ASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAI 155 (212)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGS
T ss_pred chHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 33445555666777777654 666666666555554444444555666778888988888888876655
Done!