Query 018779
Match_columns 350
No_of_seqs 246 out of 1990
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 6.4E-57 1.4E-61 452.7 30.4 329 1-348 1-341 (463)
2 COG0508 AceF Pyruvate/2-oxoglu 100.0 5.9E-52 1.3E-56 414.2 27.2 259 89-348 1-283 (404)
3 PRK05704 dihydrolipoamide succ 100.0 3.6E-51 7.8E-56 408.9 29.9 259 89-347 1-284 (407)
4 PTZ00144 dihydrolipoamide succ 100.0 7.3E-51 1.6E-55 405.9 28.8 251 84-347 38-295 (418)
5 TIGR01347 sucB 2-oxoglutarate 100.0 1.7E-50 3.7E-55 403.5 29.7 256 91-347 1-280 (403)
6 PLN02744 dihydrolipoyllysine-r 100.0 1E-50 2.2E-55 415.0 27.3 269 79-347 99-415 (539)
7 KOG0559 Dihydrolipoamide succi 100.0 1.4E-51 3.1E-56 393.0 18.3 254 90-348 72-335 (457)
8 TIGR02927 SucB_Actino 2-oxoglu 100.0 7.7E-50 1.7E-54 415.7 25.1 261 88-348 133-462 (590)
9 KOG0558 Dihydrolipoamide trans 100.0 1.9E-49 4.2E-54 376.8 13.6 291 46-348 26-350 (474)
10 TIGR01348 PDHac_trf_long pyruv 100.0 3.4E-47 7.3E-52 393.0 25.9 256 90-347 116-425 (546)
11 PLN02528 2-oxoisovalerate dehy 100.0 3.1E-46 6.8E-51 374.4 27.0 253 93-347 1-291 (416)
12 KOG0557 Dihydrolipoamide acety 100.0 6.4E-47 1.4E-51 372.7 20.7 258 87-347 35-346 (470)
13 TIGR01349 PDHac_trf_mito pyruv 100.0 4.5E-46 9.8E-51 375.2 26.8 253 93-347 2-311 (435)
14 PRK11854 aceF pyruvate dehydro 100.0 9.1E-45 2E-49 380.9 27.6 258 88-347 204-512 (633)
15 PRK11855 dihydrolipoamide acet 100.0 9.1E-44 2E-48 368.1 25.0 259 88-348 117-427 (547)
16 PRK11856 branched-chain alpha- 100.0 9.2E-42 2E-46 342.2 28.6 255 89-348 1-290 (411)
17 PRK14843 dihydrolipoamide acet 99.9 1.7E-27 3.7E-32 233.9 13.4 108 241-348 118-227 (347)
18 PRK11857 dihydrolipoamide acet 99.9 4E-27 8.8E-32 227.7 13.1 107 241-347 76-184 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 99.9 1.1E-26 2.3E-31 216.9 13.2 107 240-347 3-110 (231)
20 PRK12270 kgd alpha-ketoglutara 99.9 2.6E-21 5.7E-26 204.9 18.2 108 240-348 114-230 (1228)
21 PF00364 Biotin_lipoyl: Biotin 99.8 5.1E-20 1.1E-24 142.6 8.0 74 91-164 1-74 (74)
22 PRK14875 acetoin dehydrogenase 99.8 7.3E-19 1.6E-23 170.9 11.6 79 90-168 2-80 (371)
23 PRK11892 pyruvate dehydrogenas 99.8 4E-17 8.7E-22 166.2 19.4 81 90-170 2-83 (464)
24 PRK06748 hypothetical protein; 99.8 5.4E-18 1.2E-22 133.9 9.7 63 104-166 12-75 (83)
25 PRK05889 putative acetyl-CoA c 99.6 1.9E-15 4.2E-20 115.9 10.0 63 103-165 9-71 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.6 5.4E-15 1.2E-19 113.3 9.7 72 93-164 2-73 (73)
27 TIGR02927 SucB_Actino 2-oxoglu 99.6 2.8E-15 6.2E-20 156.9 10.7 79 89-167 1-79 (590)
28 PRK11854 aceF pyruvate dehydro 99.6 3.9E-15 8.5E-20 157.2 10.9 77 89-167 1-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.5 3.2E-14 6.9E-19 108.7 9.0 62 104-165 9-70 (70)
30 PRK11855 dihydrolipoamide acet 99.5 1.1E-13 2.4E-18 144.1 10.7 79 89-168 1-79 (547)
31 COG0511 AccB Biotin carboxyl c 99.5 1.3E-13 2.8E-18 119.6 8.2 63 103-165 77-139 (140)
32 PRK06549 acetyl-CoA carboxylas 99.4 4.3E-13 9.4E-18 114.7 9.1 62 103-164 68-129 (130)
33 TIGR01348 PDHac_trf_long pyruv 99.4 3.5E-13 7.6E-18 140.2 10.2 75 92-167 2-76 (546)
34 PRK07051 hypothetical protein; 99.4 1.2E-12 2.5E-17 102.9 9.7 70 90-165 3-79 (80)
35 PRK05641 putative acetyl-CoA c 99.4 1.3E-12 2.8E-17 114.8 8.9 68 91-164 85-152 (153)
36 cd06850 biotinyl_domain The bi 99.4 3.4E-12 7.3E-17 95.0 9.0 62 103-164 6-67 (67)
37 PLN02983 biotin carboxyl carri 99.3 3.5E-12 7.6E-17 119.7 8.4 62 104-165 205-273 (274)
38 cd06849 lipoyl_domain Lipoyl d 99.3 2.6E-11 5.6E-16 89.7 10.5 73 92-164 2-74 (74)
39 TIGR00531 BCCP acetyl-CoA carb 99.3 1.2E-11 2.6E-16 109.2 8.2 62 104-165 88-156 (156)
40 PRK14042 pyruvate carboxylase 99.2 2E-11 4.3E-16 127.7 9.5 64 103-166 532-595 (596)
41 PRK06302 acetyl-CoA carboxylas 99.2 2.6E-11 5.7E-16 106.9 8.3 62 104-165 87-155 (155)
42 TIGR02712 urea_carbox urea car 99.1 8.7E-11 1.9E-15 131.8 9.1 62 104-165 1140-1201(1201)
43 TIGR01108 oadA oxaloacetate de 99.1 2.3E-10 5E-15 119.8 8.7 58 104-161 525-582 (582)
44 PRK14040 oxaloacetate decarbox 99.1 3.4E-10 7.4E-15 118.7 9.2 62 104-165 532-593 (593)
45 TIGR01235 pyruv_carbox pyruvat 99.0 3.7E-10 8.1E-15 125.9 8.7 63 103-165 1081-1143(1143)
46 PRK09282 pyruvate carboxylase 99.0 2.8E-09 6E-14 112.0 10.2 63 103-165 529-591 (592)
47 PRK12999 pyruvate carboxylase; 98.8 7.1E-09 1.5E-13 116.1 9.1 62 104-165 1084-1145(1146)
48 COG4770 Acetyl/propionyl-CoA c 98.8 1.5E-08 3.2E-13 103.7 8.0 62 104-165 583-644 (645)
49 COG1038 PycA Pyruvate carboxyl 98.5 1.3E-07 2.8E-12 99.8 5.9 62 104-165 1087-1148(1149)
50 cd06848 GCS_H Glycine cleavage 98.5 2.3E-07 5E-12 75.3 5.4 64 90-154 15-79 (96)
51 KOG0369 Pyruvate carboxylase [ 98.2 1.7E-06 3.7E-11 90.1 6.3 62 104-165 1114-1175(1176)
52 KOG0368 Acetyl-CoA carboxylase 98.1 3.6E-06 7.8E-11 93.5 6.7 66 103-169 692-757 (2196)
53 TIGR03077 not_gcvH glycine cle 98.1 2.9E-06 6.3E-11 70.8 4.1 47 106-153 33-79 (110)
54 KOG0238 3-Methylcrotonyl-CoA c 98.1 3E-06 6.6E-11 86.0 4.9 62 104-165 609-670 (670)
55 PRK09783 copper/silver efflux 98.0 2.4E-05 5.2E-10 79.1 9.4 67 103-169 130-245 (409)
56 TIGR00998 8a0101 efflux pump m 98.0 1.7E-05 3.7E-10 77.1 8.1 36 134-169 205-240 (334)
57 PRK00624 glycine cleavage syst 98.0 1.1E-05 2.4E-10 67.7 5.7 37 113-149 41-77 (114)
58 TIGR01730 RND_mfp RND family e 98.0 1.7E-05 3.7E-10 76.1 7.2 66 103-168 33-169 (322)
59 PRK10559 p-hydroxybenzoic acid 97.9 3.9E-05 8.5E-10 74.7 8.5 67 103-169 54-190 (310)
60 PRK13380 glycine cleavage syst 97.9 1.8E-05 4E-10 69.0 5.0 62 91-153 31-93 (144)
61 PRK10476 multidrug resistance 97.8 4.2E-05 9.2E-10 75.2 7.7 36 134-169 209-244 (346)
62 PRK01202 glycine cleavage syst 97.7 6.4E-05 1.4E-09 64.2 6.3 62 106-168 40-108 (127)
63 PRK15136 multidrug efflux syst 97.7 0.00011 2.4E-09 73.7 8.3 36 134-169 216-251 (390)
64 PRK09578 periplasmic multidrug 97.7 9.3E-05 2E-09 73.9 7.6 67 103-169 70-209 (385)
65 PRK03598 putative efflux pump 97.7 8.5E-05 1.8E-09 72.6 6.7 36 134-169 204-239 (331)
66 PRK12784 hypothetical protein; 97.6 0.00024 5.2E-09 55.1 7.3 65 103-167 12-77 (84)
67 PRK15030 multidrug efflux syst 97.6 0.00017 3.7E-09 72.4 7.8 66 103-168 72-210 (397)
68 PF13533 Biotin_lipoyl_2: Biot 97.6 0.00013 2.8E-09 52.2 4.7 30 103-132 9-38 (50)
69 PRK09859 multidrug efflux syst 97.6 0.00021 4.7E-09 71.4 7.9 66 103-168 68-206 (385)
70 PF13533 Biotin_lipoyl_2: Biot 97.5 0.00015 3.2E-09 51.9 4.2 36 133-168 2-37 (50)
71 TIGR00527 gcvH glycine cleavag 97.5 0.00012 2.6E-09 62.6 4.4 42 112-153 44-85 (127)
72 PRK11556 multidrug efflux syst 97.4 0.00029 6.3E-09 71.3 7.1 65 103-167 94-231 (415)
73 PRK11578 macrolide transporter 97.4 0.00039 8.6E-09 69.0 7.5 66 103-168 68-221 (370)
74 PF12700 HlyD_2: HlyD family s 97.4 0.00019 4.1E-09 69.0 4.6 65 103-168 28-194 (328)
75 PF00302 CAT: Chloramphenicol 97.2 0.0018 3.9E-08 59.8 9.2 73 263-345 24-98 (206)
76 TIGR02971 heterocyst_DevB ABC 97.2 0.0008 1.7E-08 65.4 7.2 33 135-168 206-238 (327)
77 PF01597 GCV_H: Glycine cleava 97.1 0.00081 1.7E-08 57.0 5.1 40 112-151 39-78 (122)
78 TIGR03309 matur_yqeB selenium- 97.0 0.0019 4.2E-08 61.2 7.2 60 104-169 172-231 (256)
79 COG0509 GcvH Glycine cleavage 96.9 0.0011 2.4E-08 56.7 4.1 60 90-150 25-85 (131)
80 PRK05889 putative acetyl-CoA c 96.8 0.0028 6.2E-08 48.3 5.2 35 134-168 3-37 (71)
81 TIGR01843 type_I_hlyD type I s 96.6 0.0078 1.7E-07 60.0 8.1 33 135-167 273-306 (423)
82 TIGR00999 8a0102 Membrane Fusi 96.5 0.0051 1.1E-07 57.6 5.8 35 135-169 90-124 (265)
83 PRK13757 chloramphenicol acety 96.4 0.011 2.5E-07 55.0 7.7 69 265-343 31-99 (219)
84 PRK06748 hypothetical protein; 96.3 0.0073 1.6E-07 47.9 4.9 32 135-166 6-37 (83)
85 COG0511 AccB Biotin carboxyl c 96.1 0.0099 2.1E-07 51.6 4.9 34 133-166 70-103 (140)
86 cd06253 M14_ASTE_ASPA_like_3 A 96.0 0.021 4.5E-07 55.5 7.7 58 105-164 237-297 (298)
87 cd06850 biotinyl_domain The bi 96.0 0.013 2.8E-07 42.9 4.8 33 135-167 1-33 (67)
88 PF13375 RnfC_N: RnfC Barrel s 96.0 0.011 2.4E-07 48.5 4.7 47 103-150 37-83 (101)
89 PRK08225 acetyl-CoA carboxylas 95.9 0.019 4.1E-07 43.4 5.2 34 135-168 3-36 (70)
90 cd06250 M14_PaAOTO_like An unc 95.8 0.025 5.5E-07 56.4 7.4 59 104-164 296-358 (359)
91 cd06251 M14_ASTE_ASPA_like_1 A 95.7 0.038 8.3E-07 53.3 7.7 56 107-164 229-286 (287)
92 COG1566 EmrA Multidrug resista 95.5 0.046 1E-06 54.5 7.9 35 134-168 209-243 (352)
93 cd06252 M14_ASTE_ASPA_like_2 A 95.5 0.053 1.1E-06 53.1 8.0 59 105-165 252-314 (316)
94 PF05896 NQRA: Na(+)-transloca 95.4 0.023 5E-07 54.1 5.2 43 108-153 41-85 (257)
95 TIGR02994 ectoine_eutE ectoine 95.4 0.041 8.9E-07 54.2 7.0 57 106-164 264-324 (325)
96 PRK07051 hypothetical protein; 95.4 0.035 7.5E-07 43.3 5.3 26 103-128 54-79 (80)
97 PF13437 HlyD_3: HlyD family s 95.0 0.043 9.4E-07 44.2 4.8 33 135-167 1-33 (105)
98 PRK06549 acetyl-CoA carboxylas 94.9 0.05 1.1E-06 46.8 5.1 35 133-167 61-95 (130)
99 PF00364 Biotin_lipoyl: Biotin 94.7 0.055 1.2E-06 41.5 4.6 34 88-127 41-74 (74)
100 TIGR01235 pyruv_carbox pyruvat 94.7 0.11 2.5E-06 59.1 8.9 81 87-168 1019-1109(1143)
101 PRK10476 multidrug resistance 94.3 0.068 1.5E-06 52.6 5.3 41 125-167 42-82 (346)
102 cd06254 M14_ASTE_ASPA_like_4 A 94.3 0.095 2.1E-06 50.5 6.2 55 105-161 231-287 (288)
103 PF00529 HlyD: HlyD family sec 94.2 0.041 9E-07 52.2 3.4 35 134-168 2-36 (305)
104 PRK05641 putative acetyl-CoA c 94.2 0.083 1.8E-06 46.6 5.0 36 133-168 84-119 (153)
105 PF09891 DUF2118: Uncharacteri 93.9 0.074 1.6E-06 46.8 4.1 46 103-148 87-133 (150)
106 TIGR02971 heterocyst_DevB ABC 93.9 0.086 1.9E-06 51.2 5.1 43 126-168 6-51 (327)
107 TIGR00998 8a0101 efflux pump m 93.9 0.067 1.4E-06 52.0 4.2 36 133-168 42-77 (334)
108 COG3608 Predicted deacylase [G 93.5 0.17 3.6E-06 50.0 6.2 61 104-166 263-326 (331)
109 PF00529 HlyD: HlyD family sec 93.4 0.057 1.2E-06 51.2 2.8 28 103-130 8-35 (305)
110 PRK11578 macrolide transporter 93.2 0.18 4E-06 50.0 6.1 61 106-167 35-95 (370)
111 PRK11556 multidrug efflux syst 93.1 0.16 3.4E-06 51.6 5.7 62 106-168 61-122 (415)
112 COG4845 Chloramphenicol O-acet 93.1 0.25 5.5E-06 45.4 6.3 74 263-346 27-101 (219)
113 TIGR01936 nqrA NADH:ubiquinone 93.1 0.09 2E-06 54.0 3.9 45 104-149 37-81 (447)
114 PRK09859 multidrug efflux syst 93.1 0.17 3.7E-06 50.6 5.7 56 111-167 40-95 (385)
115 PRK14042 pyruvate carboxylase 93.0 0.39 8.4E-06 51.2 8.5 35 134-168 526-560 (596)
116 PF12700 HlyD_2: HlyD family s 92.9 0.094 2E-06 50.3 3.5 42 124-168 14-55 (328)
117 PRK06302 acetyl-CoA carboxylas 92.9 0.16 3.6E-06 44.7 4.7 26 103-128 130-155 (155)
118 TIGR01730 RND_mfp RND family e 92.8 0.16 3.4E-06 48.6 4.9 35 133-167 26-60 (322)
119 PF13437 HlyD_3: HlyD family s 92.8 0.26 5.6E-06 39.6 5.4 28 103-130 6-33 (105)
120 TIGR00531 BCCP acetyl-CoA carb 92.7 0.17 3.7E-06 44.7 4.5 26 103-128 131-156 (156)
121 TIGR01843 type_I_hlyD type I s 92.5 0.2 4.3E-06 49.9 5.4 43 126-168 36-78 (423)
122 PRK10559 p-hydroxybenzoic acid 92.3 0.15 3.3E-06 49.7 4.1 35 134-168 48-82 (310)
123 PF07831 PYNP_C: Pyrimidine nu 92.3 0.13 2.8E-06 40.0 2.8 29 103-131 29-57 (75)
124 TIGR01000 bacteriocin_acc bact 92.1 0.24 5.2E-06 50.8 5.5 42 127-168 53-94 (457)
125 PRK09578 periplasmic multidrug 92.1 0.28 6.1E-06 49.0 5.9 56 111-167 42-97 (385)
126 TIGR03794 NHPM_micro_HlyD NHPM 92.1 0.23 5E-06 50.2 5.3 37 132-168 57-93 (421)
127 PRK05352 Na(+)-translocating N 92.1 0.14 3E-06 52.7 3.6 45 104-149 38-82 (448)
128 PRK15136 multidrug efflux syst 91.6 0.22 4.9E-06 50.1 4.6 36 133-168 61-96 (390)
129 PRK03598 putative efflux pump 91.6 0.22 4.8E-06 48.6 4.4 35 133-167 43-77 (331)
130 PLN02226 2-oxoglutarate dehydr 91.5 0.28 6.1E-06 50.6 5.1 28 103-130 141-168 (463)
131 PLN02983 biotin carboxyl carri 91.4 0.31 6.7E-06 46.7 4.9 26 103-128 248-273 (274)
132 PRK14875 acetoin dehydrogenase 91.1 0.38 8.2E-06 46.6 5.5 36 90-131 45-80 (371)
133 COG1726 NqrA Na+-transporting 91.1 0.23 5E-06 49.3 3.8 44 109-155 42-87 (447)
134 TIGR01945 rnfC electron transp 90.5 0.26 5.6E-06 50.5 3.8 43 105-148 40-82 (435)
135 cd06255 M14_ASTE_ASPA_like_5 A 90.4 0.79 1.7E-05 44.4 6.9 40 107-146 241-282 (293)
136 PRK15030 multidrug efflux syst 90.2 0.35 7.6E-06 48.6 4.4 44 123-167 56-99 (397)
137 PF02749 QRPTase_N: Quinolinat 90.0 0.29 6.3E-06 38.8 2.9 24 106-129 45-68 (88)
138 KOG3373 Glycine cleavage syste 89.9 0.26 5.7E-06 43.7 2.8 58 91-153 72-129 (172)
139 TIGR03794 NHPM_micro_HlyD NHPM 89.5 0.34 7.4E-06 49.0 3.7 28 103-130 65-92 (421)
140 PF04952 AstE_AspA: Succinylgl 89.5 1.1 2.3E-05 42.9 6.9 60 105-166 228-291 (292)
141 cd06663 Biotinyl_lipoyl_domain 89.1 0.79 1.7E-05 34.4 4.6 33 89-127 41-73 (73)
142 PRK09783 copper/silver efflux 89.1 0.75 1.6E-05 46.6 5.8 46 122-167 111-158 (409)
143 COG0845 AcrA Membrane-fusion p 88.3 1.1 2.4E-05 42.5 6.2 44 122-166 56-99 (372)
144 TIGR01000 bacteriocin_acc bact 88.2 0.46 9.9E-06 48.8 3.6 30 103-132 66-95 (457)
145 TIGR01108 oadA oxaloacetate de 88.1 0.71 1.5E-05 49.1 5.0 35 134-168 518-552 (582)
146 PTZ00144 dihydrolipoamide succ 88.0 0.8 1.7E-05 46.8 5.2 29 103-131 94-122 (418)
147 PRK05035 electron transport co 87.9 0.45 9.8E-06 51.6 3.5 43 105-148 46-88 (695)
148 cd06849 lipoyl_domain Lipoyl d 87.3 1.3 2.9E-05 31.6 4.7 31 91-127 44-74 (74)
149 PRK09282 pyruvate carboxylase 86.8 1.9 4.1E-05 46.1 7.3 35 133-167 522-556 (592)
150 PRK14040 oxaloacetate decarbox 86.3 0.96 2.1E-05 48.2 4.8 36 133-168 524-559 (593)
151 COG4072 Uncharacterized protei 86.3 1.4 3E-05 38.1 4.8 44 103-146 98-142 (161)
152 PRK05704 dihydrolipoamide succ 86.1 1.3 2.7E-05 45.2 5.4 29 103-131 52-80 (407)
153 COG0845 AcrA Membrane-fusion p 86.1 0.71 1.5E-05 43.9 3.4 27 103-129 73-99 (372)
154 KOG0559 Dihydrolipoamide succi 84.3 1.1 2.3E-05 44.8 3.7 28 103-130 122-149 (457)
155 COG4656 RnfC Predicted NADH:ub 84.2 0.82 1.8E-05 47.6 3.0 39 108-148 45-83 (529)
156 TIGR01347 sucB 2-oxoglutarate 84.1 1.3 2.9E-05 45.0 4.4 28 103-130 50-77 (403)
157 TIGR00164 PS_decarb_rel phosph 83.9 1.9 4.2E-05 39.1 5.0 52 105-161 130-181 (189)
158 cd00210 PTS_IIA_glc PTS_IIA, P 83.6 1 2.2E-05 38.5 2.8 28 104-131 78-105 (124)
159 COG2190 NagE Phosphotransferas 83.5 2 4.3E-05 38.1 4.7 61 104-164 85-153 (156)
160 COG4770 Acetyl/propionyl-CoA c 83.2 1.5 3.4E-05 46.1 4.5 33 134-166 576-608 (645)
161 COG0508 AceF Pyruvate/2-oxoglu 83.2 1.5 3.3E-05 44.5 4.5 31 139-169 14-44 (404)
162 PLN02528 2-oxoisovalerate dehy 83.1 1.5 3.4E-05 44.6 4.5 32 101-132 46-77 (416)
163 PRK12999 pyruvate carboxylase; 83.0 2.9 6.4E-05 48.0 7.1 34 134-167 1077-1110(1146)
164 TIGR02712 urea_carbox urea car 82.7 1.7 3.6E-05 50.2 5.0 36 133-168 1132-1167(1201)
165 TIGR00830 PTBA PTS system, glu 82.6 1.1 2.4E-05 38.0 2.7 28 104-131 78-105 (121)
166 PRK05305 phosphatidylserine de 82.3 2.4 5.2E-05 39.0 5.1 55 104-163 149-204 (206)
167 PRK12784 hypothetical protein; 82.3 2.2 4.8E-05 33.4 4.0 35 135-169 7-41 (84)
168 PRK09439 PTS system glucose-sp 81.9 2.2 4.8E-05 38.3 4.5 28 104-131 100-127 (169)
169 PF00358 PTS_EIIA_1: phosphoen 81.8 0.94 2E-05 39.0 2.0 29 104-132 82-110 (132)
170 COG1566 EmrA Multidrug resista 79.4 2.6 5.6E-05 42.2 4.5 36 133-168 53-88 (352)
171 TIGR01995 PTS-II-ABC-beta PTS 79.4 1.9 4.2E-05 46.1 3.8 27 104-130 542-568 (610)
172 PF02666 PS_Dcarbxylase: Phosp 79.0 2.8 6E-05 38.3 4.3 68 93-163 134-202 (202)
173 PRK09439 PTS system glucose-sp 78.6 4.7 0.0001 36.2 5.5 39 122-166 87-125 (169)
174 TIGR01349 PDHac_trf_mito pyruv 76.9 3.3 7.2E-05 42.5 4.5 29 103-131 49-78 (435)
175 PRK09824 PTS system beta-gluco 75.0 3 6.4E-05 44.9 3.7 27 104-130 558-584 (627)
176 COG1038 PycA Pyruvate carboxyl 74.9 7.5 0.00016 42.9 6.6 32 135-166 1081-1112(1149)
177 COG0157 NadC Nicotinate-nucleo 74.7 2.9 6.4E-05 40.4 3.3 26 105-130 63-88 (280)
178 PRK11892 pyruvate dehydrogenas 73.3 4.4 9.6E-05 42.0 4.4 30 102-131 51-81 (464)
179 KOG0369 Pyruvate carboxylase [ 71.9 3.7 8E-05 44.3 3.4 33 134-166 1107-1139(1176)
180 PRK03934 phosphatidylserine de 71.4 7.1 0.00015 37.4 5.1 56 105-164 210-265 (265)
181 PRK14844 bifunctional DNA-dire 71.3 7 0.00015 48.1 5.9 20 109-128 2423-2442(2836)
182 PRK11856 branched-chain alpha- 71.1 7.2 0.00016 39.5 5.3 30 103-132 52-81 (411)
183 PRK10255 PTS system N-acetyl g 71.0 5.1 0.00011 43.3 4.3 29 104-132 578-606 (648)
184 cd01572 QPRTase Quinolinate ph 69.4 5.4 0.00012 38.3 3.8 24 105-128 57-80 (268)
185 PRK08072 nicotinate-nucleotide 69.0 5 0.00011 38.8 3.5 22 108-129 66-87 (277)
186 TIGR03309 matur_yqeB selenium- 68.0 6.3 0.00014 37.7 3.8 33 133-166 164-196 (256)
187 PRK06543 nicotinate-nucleotide 66.4 6.1 0.00013 38.3 3.4 24 106-129 65-88 (281)
188 cd01134 V_A-ATPase_A V/A-type 65.3 15 0.00034 36.9 6.1 56 111-168 54-112 (369)
189 PLN02744 dihydrolipoyllysine-r 65.0 7 0.00015 41.3 3.8 29 102-130 161-190 (539)
190 PRK05742 nicotinate-nucleotide 64.8 6.8 0.00015 37.9 3.4 23 107-129 67-89 (277)
191 PRK06096 molybdenum transport 64.5 6.9 0.00015 38.0 3.4 22 107-128 62-83 (284)
192 cd01573 modD_like ModD; Quinol 64.2 7 0.00015 37.6 3.4 24 106-129 56-79 (272)
193 cd06255 M14_ASTE_ASPA_like_5 A 63.6 9.3 0.0002 37.0 4.2 35 133-168 231-265 (293)
194 TIGR01042 V-ATPase_V1_A V-type 63.6 15 0.00033 39.1 6.0 56 111-168 123-181 (591)
195 PRK03140 phosphatidylserine de 63.5 7.3 0.00016 37.2 3.4 57 105-164 202-258 (259)
196 cd01568 QPRTase_NadC Quinolina 63.5 7.4 0.00016 37.3 3.4 25 105-129 56-80 (269)
197 PRK09016 quinolinate phosphori 62.9 7.6 0.00017 38.0 3.4 21 108-128 87-107 (296)
198 PRK06978 nicotinate-nucleotide 62.8 7.8 0.00017 37.9 3.4 22 107-128 83-104 (294)
199 PRK07428 nicotinate-nucleotide 62.5 7.9 0.00017 37.7 3.4 24 106-129 72-95 (288)
200 TIGR02643 T_phosphoryl thymidi 62.3 6.4 0.00014 40.5 2.9 27 102-128 376-402 (437)
201 PRK05820 deoA thymidine phosph 62.0 6.5 0.00014 40.5 2.9 30 100-129 375-404 (440)
202 PRK05848 nicotinate-nucleotide 61.6 8.4 0.00018 37.2 3.4 22 108-129 60-81 (273)
203 PRK07896 nicotinate-nucleotide 61.5 8.4 0.00018 37.5 3.4 24 106-129 76-99 (289)
204 PLN02716 nicotinate-nucleotide 61.2 8.6 0.00019 37.8 3.4 24 106-129 78-101 (308)
205 PRK10255 PTS system N-acetyl g 60.8 19 0.00041 39.0 6.2 19 148-166 585-603 (648)
206 cd06253 M14_ASTE_ASPA_like_3 A 60.7 11 0.00023 36.7 4.0 34 133-167 229-262 (298)
207 PRK06106 nicotinate-nucleotide 60.5 9 0.0002 37.2 3.4 25 105-129 69-93 (281)
208 KOG0557 Dihydrolipoamide acety 60.5 8.5 0.00018 39.7 3.4 31 139-169 50-80 (470)
209 cd06251 M14_ASTE_ASPA_like_1 A 60.3 12 0.00026 36.0 4.3 33 134-167 220-252 (287)
210 TIGR01334 modD putative molybd 59.8 9.4 0.0002 36.9 3.4 24 106-129 60-83 (277)
211 cd06254 M14_ASTE_ASPA_like_4 A 59.8 12 0.00026 36.0 4.2 35 132-167 222-256 (288)
212 PRK08385 nicotinate-nucleotide 59.4 9.6 0.00021 36.9 3.4 56 253-313 169-225 (278)
213 TIGR00078 nadC nicotinate-nucl 59.4 9.8 0.00021 36.5 3.5 22 108-129 56-77 (265)
214 cd06250 M14_PaAOTO_like An unc 58.7 13 0.00027 37.3 4.2 34 134-168 290-323 (359)
215 PF07831 PYNP_C: Pyrimidine nu 58.3 18 0.0004 27.9 4.2 30 139-170 30-59 (75)
216 TIGR02644 Y_phosphoryl pyrimid 57.8 8.9 0.00019 39.1 3.0 29 102-130 370-398 (405)
217 cd06910 M14_ASTE_ASPA_like_7 A 57.8 14 0.00031 35.3 4.3 45 112-163 226-271 (272)
218 COG3608 Predicted deacylase [G 57.7 17 0.00037 36.1 4.8 42 124-168 249-290 (331)
219 PRK02693 apocytochrome f; Revi 56.4 29 0.00063 33.6 6.0 54 103-163 203-256 (312)
220 KOG0368 Acetyl-CoA carboxylase 56.2 34 0.00074 40.4 7.3 77 87-166 632-718 (2196)
221 PF01551 Peptidase_M23: Peptid 55.8 11 0.00024 29.7 2.7 25 106-130 51-75 (96)
222 TIGR00163 PS_decarb phosphatid 54.9 11 0.00023 35.6 2.8 48 115-163 189-236 (238)
223 TIGR02994 ectoine_eutE ectoine 54.7 16 0.00035 36.0 4.2 34 133-167 255-288 (325)
224 TIGR00999 8a0102 Membrane Fusi 53.8 20 0.00044 33.1 4.6 33 91-129 89-121 (265)
225 cd06252 M14_ASTE_ASPA_like_2 A 53.7 24 0.00052 34.5 5.2 35 132-167 243-277 (316)
226 PRK06078 pyrimidine-nucleoside 53.6 12 0.00026 38.6 3.1 31 102-132 372-402 (434)
227 KOG0238 3-Methylcrotonyl-CoA c 53.3 11 0.00024 39.5 2.8 33 134-166 602-634 (670)
228 TIGR02645 ARCH_P_rylase putati 53.2 13 0.00027 39.0 3.3 19 147-165 451-469 (493)
229 PF01333 Apocytochr_F_C: Apocy 53.0 12 0.00025 31.6 2.4 51 103-163 9-62 (118)
230 PF01551 Peptidase_M23: Peptid 52.9 39 0.00085 26.4 5.5 57 103-168 20-76 (96)
231 PF05896 NQRA: Na(+)-transloca 52.5 10 0.00023 36.3 2.4 30 135-164 31-60 (257)
232 PRK04350 thymidine phosphoryla 52.0 14 0.0003 38.7 3.3 19 147-165 443-461 (490)
233 TIGR03327 AMP_phos AMP phospho 51.3 14 0.0003 38.7 3.2 20 146-165 451-470 (500)
234 TIGR02645 ARCH_P_rylase putati 51.2 27 0.00059 36.6 5.3 23 127-149 407-429 (493)
235 PF06898 YqfD: Putative stage 51.2 25 0.00054 35.5 5.0 55 104-165 167-228 (385)
236 COG4072 Uncharacterized protei 49.4 35 0.00076 29.7 4.8 30 139-168 97-126 (161)
237 PF13375 RnfC_N: RnfC Barrel s 49.1 31 0.00068 28.2 4.4 48 118-166 15-63 (101)
238 PRK08662 nicotinate phosphorib 49.1 17 0.00036 36.3 3.3 25 104-130 69-93 (343)
239 COG1155 NtpA Archaeal/vacuolar 48.9 42 0.00092 35.4 6.2 57 112-169 122-180 (588)
240 PRK04192 V-type ATP synthase s 48.7 40 0.00087 36.1 6.2 56 111-168 123-181 (586)
241 cd00210 PTS_IIA_glc PTS_IIA, P 47.9 29 0.00062 29.6 4.1 40 121-166 64-103 (124)
242 TIGR00830 PTBA PTS system, glu 46.9 31 0.00068 29.2 4.2 57 103-166 42-103 (121)
243 CHL00037 petA cytochrome f 45.6 48 0.001 32.5 5.6 54 103-163 210-264 (320)
244 PF06898 YqfD: Putative stage 45.5 24 0.00053 35.5 3.9 24 103-126 196-226 (385)
245 PRK00044 psd phosphatidylserin 45.4 19 0.00041 34.9 2.9 58 106-165 224-286 (288)
246 TIGR01043 ATP_syn_A_arch ATP s 44.4 43 0.00094 35.8 5.6 55 112-168 121-178 (578)
247 COG2190 NagE Phosphotransferas 43.3 32 0.0007 30.5 3.8 25 142-166 86-110 (156)
248 PRK06559 nicotinate-nucleotide 43.1 29 0.00063 33.8 3.9 33 253-286 183-215 (290)
249 PRK04350 thymidine phosphoryla 42.9 44 0.00096 35.0 5.3 23 127-149 399-421 (490)
250 PRK07188 nicotinate phosphorib 42.7 29 0.00063 34.8 3.9 15 299-313 261-275 (352)
251 KOG1668 Elongation factor 1 be 41.7 15 0.00032 34.6 1.5 28 108-135 180-207 (231)
252 CHL00117 rpoC2 RNA polymerase 41.0 28 0.0006 40.9 3.8 36 109-144 405-448 (1364)
253 PRK10871 nlpD lipoprotein NlpD 40.9 16 0.00035 36.1 1.7 18 111-128 273-290 (319)
254 TIGR00164 PS_decarb_rel phosph 40.4 1.1E+02 0.0023 27.7 6.9 71 91-168 73-155 (189)
255 cd00516 PRTase_typeII Phosphor 39.3 31 0.00067 32.8 3.4 27 104-130 48-74 (281)
256 PRK10871 nlpD lipoprotein NlpD 37.7 73 0.0016 31.5 5.7 25 144-168 269-293 (319)
257 PRK14698 V-type ATP synthase s 37.2 66 0.0014 36.8 6.0 68 93-168 107-181 (1017)
258 PF09891 DUF2118: Uncharacteri 37.1 36 0.00078 30.0 3.1 40 118-168 76-115 (150)
259 TIGR03327 AMP_phos AMP phospho 37.0 57 0.0012 34.3 5.1 22 128-149 409-430 (500)
260 PF00358 PTS_EIIA_1: phosphoen 36.6 27 0.00059 30.0 2.3 57 103-166 46-107 (132)
261 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 35.4 30 0.00065 26.6 2.2 51 110-162 2-62 (86)
262 cd01571 NAPRTase_B Nicotinate 34.9 40 0.00088 32.9 3.5 24 105-130 53-76 (302)
263 PRK05820 deoA thymidine phosph 34.6 59 0.0013 33.6 4.7 23 146-168 384-406 (440)
264 COG0213 DeoA Thymidine phospho 34.6 35 0.00075 35.0 3.0 27 141-169 377-403 (435)
265 PF02666 PS_Dcarbxylase: Phosp 33.5 26 0.00056 31.9 1.7 22 105-126 181-202 (202)
266 PRK02259 aspartoacylase; Provi 33.1 17 0.00037 35.1 0.5 50 111-163 231-282 (288)
267 TIGR02644 Y_phosphoryl pyrimid 33.0 75 0.0016 32.5 5.1 23 146-168 377-399 (405)
268 cd06848 GCS_H Glycine cleavage 32.9 63 0.0014 25.7 3.7 30 140-169 27-57 (96)
269 TIGR02876 spore_yqfD sporulati 32.8 52 0.0011 33.2 4.0 35 111-145 208-242 (382)
270 TIGR02643 T_phosphoryl thymidi 32.0 70 0.0015 33.1 4.7 24 146-169 383-406 (437)
271 PRK05305 phosphatidylserine de 30.5 1.5E+02 0.0032 27.2 6.3 65 103-168 98-175 (206)
272 PTZ00403 phosphatidylserine de 29.6 39 0.00085 33.9 2.4 60 104-166 280-340 (353)
273 PRK09603 bifunctional DNA-dire 28.0 80 0.0017 39.7 4.9 20 110-129 2616-2635(2890)
274 PF01333 Apocytochr_F_C: Apocy 27.8 21 0.00046 30.0 0.2 17 109-125 45-61 (118)
275 PF02749 QRPTase_N: Quinolinat 27.7 67 0.0014 25.2 3.0 25 142-166 44-68 (88)
276 TIGR01936 nqrA NADH:ubiquinone 27.3 36 0.00079 35.2 1.8 30 136-165 32-61 (447)
277 PRK06078 pyrimidine-nucleoside 26.7 97 0.0021 32.0 4.7 21 146-166 379-399 (434)
278 PRK09603 bifunctional DNA-dire 25.9 1E+02 0.0022 38.9 5.2 22 147-168 2616-2637(2890)
279 PRK02597 rpoC2 DNA-directed RN 25.7 76 0.0016 37.3 4.0 35 110-144 405-446 (1331)
280 PF03869 Arc: Arc-like DNA bin 25.3 1.4E+02 0.003 21.2 4.0 47 263-318 3-49 (50)
281 COG1326 Uncharacterized archae 24.8 2.1E+02 0.0046 26.4 6.0 53 91-158 52-104 (201)
282 PRK13380 glycine cleavage syst 23.5 93 0.002 27.1 3.4 34 135-168 37-71 (144)
283 PRK11637 AmiB activator; Provi 23.3 1.4E+02 0.0031 30.2 5.3 57 103-168 346-402 (428)
284 PRK05352 Na(+)-translocating N 22.7 50 0.0011 34.1 1.8 29 137-165 34-62 (448)
285 cd04454 S1_Rrp4_like S1_Rrp4_l 22.3 1E+02 0.0022 23.4 3.1 51 110-162 2-58 (82)
286 PRK02597 rpoC2 DNA-directed RN 22.1 1.2E+02 0.0026 35.6 4.8 22 110-131 952-973 (1331)
287 PRK11637 AmiB activator; Provi 20.8 43 0.00093 34.0 0.9 23 108-130 379-401 (428)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=6.4e-57 Score=452.65 Aligned_cols=329 Identities=62% Similarity=0.902 Sum_probs=236.4
Q ss_pred Ccc-ceeeeccc---chhhhccccccccCccccchhh---hh--hhhcccceeeeccceee--cCCcccccCCCchhhhh
Q 018779 1 MIW-GIVRRKIT---SAQVIGQSVSKIGPRCHATAQK---EA--ILTCRGFQRVQRSSYHI--LSGNYVCSTPRSEVIEL 69 (350)
Q Consensus 1 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~ 69 (350)
||+ +++||.-+ |+++.+.+++.-+-..++.|.. +. ++|.+...| |||- +.++-.|..+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-- 74 (463)
T PLN02226 1 MMLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHRGNHAH----SFHNLALPGNSGISRSASLVS-- 74 (463)
T ss_pred CcHHHHHHhhccCCCChhhhhhhhhhchhhccCcccccccccchhhhcccccc----chhhcccCCccccCCchhhhh--
Confidence 554 55665544 8999998888776554333332 22 444443332 3443 344445555543222
Q ss_pred hhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 70 IQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 70 ~~~~~~~~~~~r~~~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
.+.++|.|.|....+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+||++|+|.+|++
T Consensus 75 ----~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 75 ----STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150 (463)
T ss_pred ----hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence 2345788999888777799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEeCCCCEEEEEEeCCCccccccccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-CCCCCCCCCCCCCCCCCC
Q 018779 150 KEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKP 228 (350)
Q Consensus 150 ~eG~~v~vG~~la~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-~s~~~~~~~~~~~~~~~~ 228 (350)
++||.|++|++|++|+.+++..+...+..+.+....+.+..+........+.++|++|+.. ++++.+ .. .
T Consensus 151 ~eGd~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~----~~-----~ 221 (463)
T PLN02226 151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP----PK-----Q 221 (463)
T ss_pred CCCCEecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCC----Cc-----c
Confidence 9999999999999997543221100000000000000000000001112345677776532 111100 00 0
Q ss_pred CCCCCCCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 018779 229 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV 308 (350)
Q Consensus 229 ~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva 308 (350)
....+..+....++.+||++|||.||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||++
T Consensus 222 ~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva 301 (463)
T PLN02226 222 SAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV 301 (463)
T ss_pred cccCcccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHH
Confidence 00000000111245689999999999999999999999999999999999999999998776667999999999999999
Q ss_pred HHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 309 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 309 ~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
+||++||++|++|+++.|+++++||||||||+++||++|-
T Consensus 302 ~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPV 341 (463)
T PLN02226 302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPV 341 (463)
T ss_pred HHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEecc
Confidence 9999999999999999999999999999999999999983
No 2
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.9e-52 Score=414.22 Aligned_cols=259 Identities=38% Similarity=0.593 Sum_probs=199.9
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|+++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++||+|+||++|++|++++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CccccccccccccCCCCCCCCCC-CCcCCCCCcccCcccccCC-----------CCCCCCCCCCCCC--------CCCC-
Q 018779 169 EGVAQAASAEKAAAQPPPAEEKP-SAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPTS--------PPSK- 227 (350)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~~--------~~~~- 227 (350)
++..........+....+..++. ..........++|++|+++ ++++.+...+.+. ....
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence 64211111000000000100000 0011114567889998863 2344332221110 0000
Q ss_pred CCCCCCCC-CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 018779 228 PMASEPQL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (350)
Q Consensus 228 ~~~~~~~~-~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKA 306 (350)
..+..+.. ......+++||+++||.|+++|.+|++++||+|++.++|++.|+++|+++++.+.++ |+|+||++||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 00000000 123456889999999999999999999999999999999999999999999987755 9999999999999
Q ss_pred HHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCCceeecC
Q 018779 307 AVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 307 va~AL~~~P~lNa~~d~~--~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
++.||++||.+|++||++ .|++++++||||||+|++||++|-
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpV 283 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPV 283 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecc
Confidence 999999999999999975 799999999999999999999983
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=3.6e-51 Score=408.93 Aligned_cols=259 Identities=45% Similarity=0.658 Sum_probs=197.7
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++|+.++
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred Cccccc-cccccccCCCCCCCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC----------CCCC
Q 018779 169 EGVAQA-ASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT----------SPPS 226 (350)
Q Consensus 169 ~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~----------~~~~ 226 (350)
+..... .+....+..+.+.+.............++|++|+++ ++|+.+...+.+ .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 321110 000000000000000000001112346899999863 455554432110 0000
Q ss_pred CCCCC-CC-CC-CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHH
Q 018779 227 KPMAS-EP-QL-PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 303 (350)
Q Consensus 227 ~~~~~-~~-~~-~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fl 303 (350)
.+... .+ .. ......+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|+|+||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 00000 00 00 00112456899999999999999999999999999999999999999999987766678999999999
Q ss_pred HHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779 304 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 304 iKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+||+++||++||.||++|++++|++++++||||||++++||++|
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivP 284 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVP 284 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeC
Confidence 99999999999999999999999999999999999999999998
No 4
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=7.3e-51 Score=405.91 Aligned_cols=251 Identities=48% Similarity=0.720 Sum_probs=189.6
Q ss_pred cCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 84 SSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 84 ~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
+...+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++
T Consensus 38 ~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~ 117 (418)
T PTZ00144 38 SKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSE 117 (418)
T ss_pred ccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEE
Confidence 33345678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccccccccCCCC-CCCCCC-C--CcC---CCCCcccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018779 164 ISKSGEGVAQAASAEKAAAQPP-PAEEKP-S--AEK---QTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLP 236 (350)
Q Consensus 164 i~~~~~~~~~~~p~~~~~~~~~-~~~~~~-~--~~~---~~~~~~asP~vr~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 236 (350)
|+..++..... ........++ +.+... . +.. ......++|.+|+... .+.+.+.+ .+...
T Consensus 118 I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~-----------~~~~~~~~-~~~~~ 184 (418)
T PTZ00144 118 IDTGGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEP-----------APAAKPPP-TPVAR 184 (418)
T ss_pred EcCCCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhcccc-----------CCCCCCCC-CCccc
Confidence 97654321100 0000000000 000000 0 000 0001223444433110 00000000 00000
Q ss_pred CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCc
Q 018779 237 PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPV 316 (350)
Q Consensus 237 ~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~ 316 (350)
....++.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||++.||++||.
T Consensus 185 ~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~ 264 (418)
T PTZ00144 185 ADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPI 264 (418)
T ss_pred cCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChH
Confidence 01123568999999999999999999999999999999999999999999877666799999999999999999999999
Q ss_pred ceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779 317 VNAVIDGDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 317 lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+|++|++++|+++++|||||||++++||++|
T Consensus 265 ~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vP 295 (418)
T PTZ00144 265 VNAYIDGDEIVYRNYVDISVAVATPTGLVVP 295 (418)
T ss_pred hheEEcCCEEEEecCCCEEEEEECCCCEEEc
Confidence 9999999899999999999999999999998
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=1.7e-50 Score=403.45 Aligned_cols=256 Identities=44% Similarity=0.667 Sum_probs=195.6
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCc
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~ 170 (350)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+||++|+|.+|++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999865422
Q ss_pred cccccccccccCCCCC--CCCCCCCcCCCCCcccCcccccCC-----------CCCCCCCCCCCC------CC--CCCC-
Q 018779 171 VAQAASAEKAAAQPPP--AEEKPSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKPT------SP--PSKP- 228 (350)
Q Consensus 171 ~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~~------~~--~~~~- 228 (350)
.. ..+....+.+..+ .+++.........+.++|++|+++ ++|+.+...+.+ .. .+.+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~ 159 (403)
T TIGR01347 81 TA-APPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPA 159 (403)
T ss_pred cc-cccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCC
Confidence 11 0000000000000 000000011112345899999863 455554332110 00 0000
Q ss_pred CCCCCCCC--CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHH
Q 018779 229 MASEPQLP--PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKA 306 (350)
Q Consensus 229 ~~~~~~~~--~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKA 306 (350)
.+.....+ .....+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||
T Consensus 160 ~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA 239 (403)
T TIGR01347 160 PAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKA 239 (403)
T ss_pred CCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHH
Confidence 00000000 0112456899999999999999999999999999999999999999999987766679999999999999
Q ss_pred HHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779 307 AVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 307 va~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
++.||++||.||++|+++.|++++++||||||++++||++|
T Consensus 240 ~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vP 280 (403)
T TIGR01347 240 VVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVP 280 (403)
T ss_pred HHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEEC
Confidence 99999999999999999999999999999999999999998
No 6
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=1e-50 Score=415.01 Aligned_cols=269 Identities=25% Similarity=0.325 Sum_probs=202.8
Q ss_pred ccccccCCCCc--eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-Ee
Q 018779 79 RSRLFSSDSGD--LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TV 155 (350)
Q Consensus 79 ~~r~~~~~~~~--~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v 155 (350)
+.|.|+++.++ .++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++|++|+++|+|.+|++++|+ .|
T Consensus 99 ~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v 178 (539)
T PLN02744 99 SARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEI 178 (539)
T ss_pred ccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCccc
Confidence 46889887655 5899999999999999999999999999999999999999999999999999999999999996 79
Q ss_pred CCCCEEEEEEeCCCcccc-----c----ccccc----ccC--CCC----CCCCCC---CCc-C---CCCCcccCcccccC
Q 018779 156 EPGAKIAVISKSGEGVAQ-----A----ASAEK----AAA--QPP----PAEEKP---SAE-K---QTPESEAAPAVKDK 209 (350)
Q Consensus 156 ~vG~~la~i~~~~~~~~~-----~----~p~~~----~~~--~~~----~~~~~~---~~~-~---~~~~~~asP~vr~~ 209 (350)
++|++|++|.+++++... . .+... .+. ... +.+.+. ... . ....+.++|++|++
T Consensus 179 ~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrL 258 (539)
T PLN02744 179 KVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKL 258 (539)
T ss_pred CCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHH
Confidence 999999999543322100 0 00000 000 000 000000 000 0 11124579999886
Q ss_pred C-----------CCCCCCCCCCCCC----C--CCCCCCCCC--CCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEE
Q 018779 210 T-----------PSEPPPTAKKPTS----P--PSKPMASEP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTF 270 (350)
Q Consensus 210 ~-----------~s~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~ 270 (350)
+ ++|+.+...+.+. . ...+..+.+ ...+...++.+||++|||.||++|++||+++||||++
T Consensus 259 Are~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~ 338 (539)
T PLN02744 259 AEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLT 338 (539)
T ss_pred HHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEE
Confidence 3 4566554332110 0 000000000 0011112356899999999999999999999999999
Q ss_pred eEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779 271 NEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 271 ~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
.|+|+|+|+++|+++|+.+.+..|+|+||++||+||++.||++||.||++|+++.|+++++|||||||+|++||++|
T Consensus 339 ~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vP 415 (539)
T PLN02744 339 VDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVP 415 (539)
T ss_pred EEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEEC
Confidence 99999999999999998765556899999999999999999999999999999999999999999999999999998
No 7
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.4e-51 Score=392.98 Aligned_cols=254 Identities=54% Similarity=0.823 Sum_probs=192.6
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.+++.+|.++|+++||+|.+|++++||+|+++|.||+|||||.+++|+||.+|+|.++++++||+|..|+.|+.|....+
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA 151 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA 151 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999987533
Q ss_pred cccc--ccccccccCCCCCCCCCCCC-cCCCCCcccCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC
Q 018779 170 GVAQ--AASAEKAAAQPPPAEEKPSA-EKQTPESEAAPAVKDK-TPSEPPPTAKKPTSPPSKPMASEPQLP------PKD 239 (350)
Q Consensus 170 ~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~~~~~asP~vr~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 239 (350)
.... .+|+.+.+.++ ++..++++ ..+.......|..+.. +++.+. +.. +++..++..++..+ +..
T Consensus 152 pa~~~~~apa~~~pk~~-~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~--P~~--~~a~k~~v~~~~~~p~~~~~~~R 226 (457)
T KOG0559|consen 152 PAKGGASAPAKAEPKTA-PAAAAPPKPSSKPPPKEAAPVAESPPAPSSPE--PVP--ASAKKPSVAQPKPPPSEGATPSR 226 (457)
T ss_pred CccccccCCCccCCCCC-CCCCCCCCccCCCCccccCCCCCCCCCCCCCC--CCC--ccccCccccCCCCCcccccCCCc
Confidence 2211 12222211110 00000000 1111111222221110 000000 000 00000000111111 134
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
.+++++|++||+.||+||.+|+++.+.+|+|+||||++|+++|++||+.|.+++|+|+.||.+|+|||+.||++.|.+|+
T Consensus 227 ~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNa 306 (457)
T KOG0559|consen 227 SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNA 306 (457)
T ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 320 VIDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
.+|+++|+|++|+||+|||+||+||++|-
T Consensus 307 vIdg~~iVYRDyvDISvAVaTpkGLVvPV 335 (457)
T KOG0559|consen 307 VIDGDDIVYRDYVDISVAVATPKGLVVPV 335 (457)
T ss_pred eecCCeeEEeecceeEEEeecCCceeeee
Confidence 99999999999999999999999999983
No 8
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=7.7e-50 Score=415.68 Aligned_cols=261 Identities=33% Similarity=0.510 Sum_probs=196.0
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
++.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++||.|++|++|++|+.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCcccc-----ccc-c------ccccC-CCC----CCC---C----CC---C-C-c--C-CCCCcccCcccccCC-----
Q 018779 168 GEGVAQ-----AAS-A------EKAAA-QPP----PAE---E----KP---S-A-E--K-QTPESEAAPAVKDKT----- 210 (350)
Q Consensus 168 ~~~~~~-----~~p-~------~~~~~-~~~----~~~---~----~~---~-~-~--~-~~~~~~asP~vr~~~----- 210 (350)
++.... ... . ...+. ... ..+ . .. . . . . ....+.++|++|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 432110 000 0 00000 000 000 0 00 0 0 0 0 112356799999863
Q ss_pred ------CCCCCCCCCCC-------C-----CCCCC----CCCCC---C-CCC-C---CCCcceeeCchHHHHHHHHHHhc
Q 018779 211 ------PSEPPPTAKKP-------T-----SPPSK----PMASE---P-QLP-P---KDRERRVPMTRLRKRVATRLKDS 260 (350)
Q Consensus 211 ------~s~~~~~~~~~-------~-----~~~~~----~~~~~---~-~~~-~---~~~~~~vpls~~Rk~IA~~m~~S 260 (350)
++|+.++..+. . ..+.. ..+.. + ..+ + ...++.+||++|||.||++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 45555432210 0 00000 00000 0 000 0 01245789999999999999999
Q ss_pred cccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEe
Q 018779 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAV 338 (350)
Q Consensus 261 ~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAV 338 (350)
|+++||||+++|||||+|+++|+++|+.+.+++|+|||||+||+||+++||++||.||++|++ ++|+++++|||||||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999998766566899999999999999999999999999985 479999999999999
Q ss_pred ecCCceeecC
Q 018779 339 GTKKVCDNSF 348 (350)
Q Consensus 339 dT~~GLi~~~ 348 (350)
||++||++|-
T Consensus 453 ~t~~GL~vPv 462 (590)
T TIGR02927 453 DTDAGLLSPV 462 (590)
T ss_pred ECCCCcEecc
Confidence 9999999983
No 9
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.9e-49 Score=376.84 Aligned_cols=291 Identities=21% Similarity=0.324 Sum_probs=216.6
Q ss_pred eccceeecCCcccccCCCchhhhhhhcCCccccccccccCCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEE
Q 018779 46 QRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIA 125 (350)
Q Consensus 46 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ 125 (350)
.+++.|..+++|.|+..+..+..--. ........+.+| .++|++.++||+|.|++|.+|+|||||+|++.|+||
T Consensus 26 ~~~~~h~skp~~v~l~~~~~~~~s~~-----~~~~~~t~s~~g-vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lC 99 (474)
T KOG0558|consen 26 LSSSLHVSKPFFVTLMKWGGGSRSWF-----SNEAMATDSNSG-VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLC 99 (474)
T ss_pred hccCccccCcceEEEeccCCcccccc-----chhhhhcccccc-eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchh
Confidence 34556778889999888765542000 000111112234 899999999999999999999999999999999999
Q ss_pred EEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCccccccccccccCCCCCCC-CCCCCcCCCCCcccCc
Q 018779 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAE-EKPSAEKQTPESEAAP 204 (350)
Q Consensus 126 evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~asP 204 (350)
||++|||+++|.+.|+|+|.+|+.+.||...||++|..++.++..+... +..+.++... .....+....+.+++|
T Consensus 100 EVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e----~s~es~~vs~~~~~~~~~~~~~tlaTP 175 (474)
T KOG0558|consen 100 EVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSPE----DSDESPAVSLGESKQGEESLLKTLATP 175 (474)
T ss_pred hcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCcc----cCCccccccCCCCchhhhhccccccCH
Confidence 9999999999999999999999999999999999999999776432211 1111111111 1111233445678999
Q ss_pred ccccCC-----------CCCCCCCCCC----------CC-C-CCC--------CCCCCCCCCCCCCCcceeeCchHHHHH
Q 018779 205 AVKDKT-----------PSEPPPTAKK----------PT-S-PPS--------KPMASEPQLPPKDRERRVPMTRLRKRV 253 (350)
Q Consensus 205 ~vr~~~-----------~s~~~~~~~~----------~~-~-~~~--------~~~~~~~~~~~~~~~~~vpls~~Rk~I 253 (350)
+||+++ +++-.++.-+ +. . ++. .+++.......-..+..+|+.+++|+|
T Consensus 176 aVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAM 255 (474)
T KOG0558|consen 176 AVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAM 255 (474)
T ss_pred HHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHH
Confidence 999864 2232222111 00 0 000 000111111112346789999999999
Q ss_pred HHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCC
Q 018779 254 ATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDY 331 (350)
Q Consensus 254 A~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~ 331 (350)
-+.|+++. .||||.+.+|+|+|.|+++|++||..+. +.|+|+|||+||+||++.||.+||.+|+++|+ +.|+++.+
T Consensus 256 vKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~a~-e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~s 333 (474)
T KOG0558|consen 256 VKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKENAK-ERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGS 333 (474)
T ss_pred HHHHHHHh-cCCccccccccChHHHHHHHHHHhhhhh-hcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcc
Confidence 99999995 7999999999999999999999998654 56999999999999999999999999999998 57999999
Q ss_pred ccEEEEeecCCceeecC
Q 018779 332 IDISFAVGTKKVCDNSF 348 (350)
Q Consensus 332 vnIGIAVdT~~GLi~~~ 348 (350)
||||||+||++||++|.
T Consensus 334 HNIgvAmdT~~GLvVPN 350 (474)
T KOG0558|consen 334 HNIGVAMDTEQGLVVPN 350 (474)
T ss_pred cceeEEecCCCceeccC
Confidence 99999999999999984
No 10
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=3.4e-47 Score=393.02 Aligned_cols=256 Identities=27% Similarity=0.403 Sum_probs=191.4
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.++|+||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999999976443
Q ss_pred ccccc-cccc-----cccCCCCC----CCC-CC--CCc-----C-CCCCc-ccCcccccCC-----------CCCCCCCC
Q 018779 170 GVAQA-ASAE-----KAAAQPPP----AEE-KP--SAE-----K-QTPES-EAAPAVKDKT-----------PSEPPPTA 218 (350)
Q Consensus 170 ~~~~~-~p~~-----~~~~~~~~----~~~-~~--~~~-----~-~~~~~-~asP~vr~~~-----------~s~~~~~~ 218 (350)
..... .+.. +.+....+ .+. .. ... . ..... .++|++|+++ ++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 0000 00000000 000 00 000 0 01123 5799998753 45554432
Q ss_pred CCC-------C----CCCCCCC-C-C---CCCCC-----CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechH
Q 018779 219 KKP-------T----SPPSKPM-A-S---EPQLP-----PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277 (350)
Q Consensus 219 ~~~-------~----~~~~~~~-~-~---~~~~~-----~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~ 277 (350)
.+. . .+..... . . .+..+ ....++.+||++|||.||++|++||+++||||++.|+|||+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 210 0 0000000 0 0 00000 00123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCCceeec
Q 018779 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 278 L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
|+++|+++|+.+.+ .|+|+|||+||+||+++||++||.||++|++ +.|+++++|||||||+|++||++|
T Consensus 355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vP 425 (546)
T TIGR01348 355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVP 425 (546)
T ss_pred HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEEC
Confidence 99999999976653 5899999999999999999999999999985 469999999999999999999998
No 11
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=3.1e-46 Score=374.45 Aligned_cols=253 Identities=16% Similarity=0.283 Sum_probs=188.0
Q ss_pred EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCccc
Q 018779 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGEGVA 172 (350)
Q Consensus 93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~~~ 172 (350)
|+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++|+++|+|.++++++|+.+++|++|+.|+.+++...
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975443211
Q ss_pred c-ccccccccCCCCCCCCC-CCCcCCCCCcccCcccccCC-----------CCCCCCCCCCC---------C---CCCCC
Q 018779 173 Q-AASAEKAAAQPPPAEEK-PSAEKQTPESEAAPAVKDKT-----------PSEPPPTAKKP---------T---SPPSK 227 (350)
Q Consensus 173 ~-~~p~~~~~~~~~~~~~~-~~~~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~---------~---~~~~~ 227 (350)
. ..+..+....+.+.+.+ ...........++|++|+++ ++++.+...+. . .+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 0 00000000000000000 00001111246889998752 45554432110 0 00000
Q ss_pred C---CCCC------CCCCCCC--CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCc
Q 018779 228 P---MASE------PQLPPKD--RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVK 296 (350)
Q Consensus 228 ~---~~~~------~~~~~~~--~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvk 296 (350)
+ .+.. +..+... .++.+||++|||+||++|++|| ++||||++.|+|+++|+++|+++|+... +.|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~~-~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENNT-DPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhhh-hcCCc
Confidence 0 0000 0000001 2456899999999999999997 9999999999999999999999986543 45899
Q ss_pred ccHHHHHHHHHHHHHhhCCcceeEEeCC--eEEEcCCccEEEEeecCCceeec
Q 018779 297 LGLMSGFVKAAVSALQHQPVVNAVIDGD--DIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 297 ls~~~fliKAva~AL~~~P~lNa~~d~~--~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+||++||+||+++||++||.||++|+++ .|++++++||||||++++||++|
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vP 291 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVP 291 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEec
Confidence 9999999999999999999999999875 79999999999999999999998
No 12
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=6.4e-47 Score=372.66 Aligned_cols=258 Identities=25% Similarity=0.345 Sum_probs=197.9
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCC-CEeCCCCEEEEEE
Q 018779 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEG-ETVEPGAKIAVIS 165 (350)
Q Consensus 87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG-~~v~vG~~la~i~ 165 (350)
.+.+.+|.||.|+.+|+||.|++|.+||||.+++||+||||||||++|++|++++|+|.+|+++|| ..|+||.+||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 578899999999999999999999999999999999999999999999999999999999999999 7999999999998
Q ss_pred eCCCcccccc-ccc----c-c-cC-C--CCCCC------C-CC-C----C--cCC-CCCcccCcccccC-----------
Q 018779 166 KSGEGVAQAA-SAE----K-A-AA-Q--PPPAE------E-KP-S----A--EKQ-TPESEAAPAVKDK----------- 209 (350)
Q Consensus 166 ~~~~~~~~~~-p~~----~-~-~~-~--~~~~~------~-~~-~----~--~~~-~~~~~asP~vr~~----------- 209 (350)
+.+++..+.+ +.. . . +. + ++++. + +. . + ... ..++.++|+++.+
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 7666543321 000 0 0 00 0 00000 0 00 0 0 000 1244567777653
Q ss_pred CCCCCCCCCCCC-----------CC-CCCCCCCC--CC--CCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEE
Q 018779 210 TPSEPPPTAKKP-----------TS-PPSKPMAS--EP--QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEV 273 (350)
Q Consensus 210 ~~s~~~~~~~~~-----------~~-~~~~~~~~--~~--~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~ev 273 (350)
.++||.++..+. ++ ..++++.+ .+ .......++.+|++.||+.|++||.+|+++|||+|+..++
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~ 274 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDV 274 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeee
Confidence 356666542210 10 00010000 01 0011233789999999999999999999999999999999
Q ss_pred echHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC-CeEEEcCCccEEEEeecCCceeec
Q 018779 274 DMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG-DDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 274 D~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~-~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+++.|+++|+++| + ++.+.++|++|||+||++.||+++|++|++|.+ +.|+++++|||.+||+|++|||+|
T Consensus 275 ~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitP 346 (470)
T KOG0557|consen 275 NLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITP 346 (470)
T ss_pred ehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccch
Confidence 9999999999999 2 356889999999999999999999999999988 689999999999999999999997
No 13
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=4.5e-46 Score=375.20 Aligned_cols=253 Identities=27% Similarity=0.356 Sum_probs=189.9
Q ss_pred EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE-eCCCCEEEEEEeCCCcc
Q 018779 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISKSGEGV 171 (350)
Q Consensus 93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~-v~vG~~la~i~~~~~~~ 171 (350)
|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|+++++..
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999 99999999997543321
Q ss_pred c-c--------c--cccc--cccC-C---CCC--CCC-CC-CCc---C-----CCCCcccCcccccCC-----------C
Q 018779 172 A-Q--------A--ASAE--KAAA-Q---PPP--AEE-KP-SAE---K-----QTPESEAAPAVKDKT-----------P 211 (350)
Q Consensus 172 ~-~--------~--~p~~--~~~~-~---~~~--~~~-~~-~~~---~-----~~~~~~asP~vr~~~-----------~ 211 (350)
. . . ++.. ..+. . +.+ .+. .. ... . ....+.++|++|+++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 1 0 0 0000 0000 0 000 000 00 000 0 001245789998753 4
Q ss_pred CCCCCCCCCC-------C----CCCCCCCCCCC----CCC-CCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEec
Q 018779 212 SEPPPTAKKP-------T----SPPSKPMASEP----QLP-PKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDM 275 (350)
Q Consensus 212 s~~~~~~~~~-------~----~~~~~~~~~~~----~~~-~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~ 275 (350)
+++.+...+. . .+.+...+..+ ..+ .....+.+||++|||.||++|++||+++||||++.|+||
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~ 241 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV 241 (435)
T ss_pred CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence 5555433211 0 00000000000 000 011235689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeec
Q 018779 276 TNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 276 t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
|+|+++|+++|+.+. + |.|+||++||+||+++||++||.||++|++++|+++++|||||||++++||++|
T Consensus 242 t~l~~~r~~~~~~~~-~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vP 311 (435)
T TIGR01349 242 DKLLALRKELNAMAS-E-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITP 311 (435)
T ss_pred HHHHHHHHHHHhhhh-c-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEEC
Confidence 999999999997643 2 889999999999999999999999999999899999999999999999999998
No 14
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=9.1e-45 Score=380.92 Aligned_cols=258 Identities=23% Similarity=0.346 Sum_probs=191.1
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
++.++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++||.|++|++|+.|+.+
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCcccccc-c---cccccC--C-CCCCCCCC-CC------cCCCCCcccCcccccCC-----------CCCCCCCCCCC-
Q 018779 168 GEGVAQAA-S---AEKAAA--Q-PPPAEEKP-SA------EKQTPESEAAPAVKDKT-----------PSEPPPTAKKP- 221 (350)
Q Consensus 168 ~~~~~~~~-p---~~~~~~--~-~~~~~~~~-~~------~~~~~~~~asP~vr~~~-----------~s~~~~~~~~~- 221 (350)
++...... + ..+.+. . +.+...+. .. ........++|++|+++ ++++.++..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence 43211000 0 000000 0 00000000 00 00111346799998753 45554432210
Q ss_pred ------C----CC-CCC--CCC-CC------CCCCC--CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHH
Q 018779 222 ------T----SP-PSK--PMA-SE------PQLPP--KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLM 279 (350)
Q Consensus 222 ------~----~~-~~~--~~~-~~------~~~~~--~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~ 279 (350)
. .. .+. +.. .. +..+. ...++.+||++|||.||++|++||+++||||++.|+|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 0 00 000 000 00 00000 012356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hCCCcccHHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCCceeec
Q 018779 280 KLRSDYKDAFLE-KHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 280 ~lR~~lk~~~~~-~~gvkls~~~fliKAva~AL~~~P~lNa~~d--~~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
++|+++|+.... +.|+|+||++||+||+++||++||.||++|+ +++|+++++|||||||++++||++|
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vP 512 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVP 512 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEe
Confidence 999999854322 3589999999999999999999999999997 3579999999999999999999986
No 15
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=9.1e-44 Score=368.14 Aligned_cols=259 Identities=34% Similarity=0.502 Sum_probs=193.0
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+++++|+||+||+ |+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...
T Consensus 117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 4468999999999 999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCccccc---ccccc--c--c-CCCCCCCC---CCCC-c--CCCCCc-ccCcccccC-----------CCCCCCCCCCCC
Q 018779 168 GEGVAQA---ASAEK--A--A-AQPPPAEE---KPSA-E--KQTPES-EAAPAVKDK-----------TPSEPPPTAKKP 221 (350)
Q Consensus 168 ~~~~~~~---~p~~~--~--~-~~~~~~~~---~~~~-~--~~~~~~-~asP~vr~~-----------~~s~~~~~~~~~ 221 (350)
++..... .+..+ . . ....+... .... . ...... .++|++|++ .++++.+...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 275 (547)
T PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE 275 (547)
T ss_pred CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence 3221000 00000 0 0 00000000 0000 0 001122 678999875 345555432210
Q ss_pred -------C----CCCCC--CCCC---CC---CCCC-----CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechH
Q 018779 222 -------T----SPPSK--PMAS---EP---QLPP-----KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 277 (350)
Q Consensus 222 -------~----~~~~~--~~~~---~~---~~~~-----~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~ 277 (350)
. .+.+. +... .. ..+. ...++.+||++|||.||++|++||+++||||++.|+|+|+
T Consensus 276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~ 355 (547)
T PRK11855 276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355 (547)
T ss_pred HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence 0 00000 0000 00 0000 0124568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEe--CCeEEEcCCccEEEEeecCCceeecC
Q 018779 278 LMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID--GDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 278 L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d--~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
|+++|+++++.+.+ .|+|+||++||+||+++||++||.||++|+ ++.|+++++|||||||++++||++|+
T Consensus 356 l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpv 427 (547)
T PRK11855 356 LEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV 427 (547)
T ss_pred HHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCC
Confidence 99999999976543 489999999999999999999999999998 45899999999999999999999986
No 16
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=9.2e-42 Score=342.19 Aligned_cols=255 Identities=33% Similarity=0.528 Sum_probs=191.4
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|+++++||+||++|+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...+
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred C-ccccccc-ccc-ccCCCC--CCC--CCCC-C---c-CCC-CCcccCcccccCC-----------CCCCCCCCCCCC--
Q 018779 169 E-GVAQAAS-AEK-AAAQPP--PAE--EKPS-A---E-KQT-PESEAAPAVKDKT-----------PSEPPPTAKKPT-- 222 (350)
Q Consensus 169 ~-~~~~~~p-~~~-~~~~~~--~~~--~~~~-~---~-~~~-~~~~asP~vr~~~-----------~s~~~~~~~~~~-- 222 (350)
+ ....... ... ...++. ..+ ...+ . . ... ....++|++|+++ ++++.+...+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~ 160 (411)
T PRK11856 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE 160 (411)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence 4 2111100 000 000000 000 0000 0 0 001 1225789988753 455554332110
Q ss_pred -----C---CCCCCCCC-CCCCCCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhC
Q 018779 223 -----S---PPSKPMAS-EPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKH 293 (350)
Q Consensus 223 -----~---~~~~~~~~-~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~ 293 (350)
. +.+..... .+.......++.+||++|||.||++|++||+++|||+++.++|+|+|+++|+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~----- 235 (411)
T PRK11856 161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI----- 235 (411)
T ss_pred HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence 0 00000000 000001123567899999999999999999999999999999999999999999742
Q ss_pred CCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 294 GVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 294 gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
+.++||++||+||+++||++||.||++|+++.|+++++||||+||++++||++|.
T Consensus 236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pv 290 (411)
T PRK11856 236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPV 290 (411)
T ss_pred ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCc
Confidence 4799999999999999999999999999999999999999999999999999874
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=99.95 E-value=1.7e-27 Score=233.93 Aligned_cols=108 Identities=31% Similarity=0.439 Sum_probs=101.4
Q ss_pred cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (350)
Q Consensus 241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~ 320 (350)
.+.+||++|||.||++|++||+++||||++.|||+++|+++|+++|+.+.++.|+|+||++||+||++.||++||.||++
T Consensus 118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~ 197 (347)
T PRK14843 118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS 197 (347)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence 45689999999999999999999999999999999999999999998776666899999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEeecCCceeecC
Q 018779 321 IDG--DDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 321 ~d~--~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
|++ +.|+++++|||||||+|++||++|-
T Consensus 198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPV 227 (347)
T PRK14843 198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPV 227 (347)
T ss_pred EecCCCeEEEecccceEEEEecCCCeEeCc
Confidence 985 4699999999999999999999983
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.94 E-value=4e-27 Score=227.70 Aligned_cols=107 Identities=31% Similarity=0.462 Sum_probs=101.3
Q ss_pred cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (350)
Q Consensus 241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~ 320 (350)
++.+||++||+.||++|++||+++||||++.|+|+|+|+++|+++|+.+.+++|+|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 45689999999999999999999999999999999999999999998776667999999999999999999999999999
Q ss_pred EeC--CeEEEcCCccEEEEeecCCceeec
Q 018779 321 IDG--DDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 321 ~d~--~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
|++ +.|+++++|||||||||++||++|
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vP 184 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVP 184 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeC
Confidence 985 479999999999999999999998
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.94 E-value=1.1e-26 Score=216.86 Aligned_cols=107 Identities=36% Similarity=0.487 Sum_probs=96.0
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
.++++|++++||+||++|++||+++||+|++.|||+|+|+++|+++|+...+ .+.|+|+++|++||++.||++||.||+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhcc
Confidence 4678999999999999999999999999999999999999999999987653 356999999999999999999999999
Q ss_pred EEeCCe-EEEcCCccEEEEeecCCceeec
Q 018779 320 VIDGDD-IIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 320 ~~d~~~-I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+|+++. |+++++|||||||++++||++|
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vP 110 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVP 110 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEE
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEE
Confidence 999987 9999999999999999999997
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.87 E-value=2.6e-21 Score=204.90 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=101.2
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
..+.+||++++++||++|..|+. +|++|.+.+||++.|+++|..+|+++.+.+|.|+|||+||+||+++||++||.+|+
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNa 192 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNR 192 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhc
Confidence 34678999999999999999975 89999999999999999999999999888999999999999999999999999999
Q ss_pred EEeC--C--eEEEcCCccEEEEeecC-----CceeecC
Q 018779 320 VIDG--D--DIIYRDYIDISFAVGTK-----KVCDNSF 348 (350)
Q Consensus 320 ~~d~--~--~I~~~~~vnIGIAVdT~-----~GLi~~~ 348 (350)
+|++ + .|+++++||||||||++ +||+||-
T Consensus 193 sy~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPv 230 (1228)
T PRK12270 193 HYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPA 230 (1228)
T ss_pred eeeccCCCceeeccCCcceEEEEecCCCCCCcceeecc
Confidence 9984 3 49999999999999999 7999983
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.81 E-value=5.1e-20 Score=142.64 Aligned_cols=74 Identities=38% Similarity=0.780 Sum_probs=72.3
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
.+|++|.+|..+++++|.+|++++||.|++||+||+|||||+.++|+||++|+|.++++++||.|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.78 E-value=7.3e-19 Score=170.95 Aligned_cols=79 Identities=38% Similarity=0.632 Sum_probs=76.2
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998644
No 23
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.75 E-value=4e-17 Score=166.16 Aligned_cols=81 Identities=36% Similarity=0.646 Sum_probs=76.7
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEEeCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISKSG 168 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~~~~ 168 (350)
.++|+||+||++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.+|++++|+ .|++|++|++|++++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999995 799999999998765
Q ss_pred Cc
Q 018779 169 EG 170 (350)
Q Consensus 169 ~~ 170 (350)
++
T Consensus 82 ~~ 83 (464)
T PRK11892 82 ES 83 (464)
T ss_pred Cc
Confidence 44
No 24
>PRK06748 hypothetical protein; Validated
Probab=99.75 E-value=5.4e-18 Score=133.89 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=61.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc-CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet-dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.|+|.+|+|++||.|++||+|++||| ||+.++|+||.+|+|.+|++++||.|++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 49999999999999999999999999 9999999999999999999999999999999999964
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.63 E-value=1.9e-15 Score=115.93 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=60.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
-.|+|.+|++++||+|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 459999999999999999999999999999999999999999999999999999999999984
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.60 E-value=5.4e-15 Score=113.32 Aligned_cols=72 Identities=35% Similarity=0.637 Sum_probs=69.7
Q ss_pred EEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 93 AVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 93 i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
|.+|++|..+.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999875
No 27
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.60 E-value=2.8e-15 Score=156.94 Aligned_cols=79 Identities=43% Similarity=0.752 Sum_probs=75.8
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
|.++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++++|+.+|+|.++++++||.|++|++|+.|+..
T Consensus 1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999764
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.59 E-value=3.9e-15 Score=157.19 Aligned_cols=77 Identities=32% Similarity=0.588 Sum_probs=74.0
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
|..+|+||+|| |+||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus 1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 34689999999 999999999999999999999999999999999999999999999999999999999999999865
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.54 E-value=3.2e-14 Score=108.69 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=60.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|.+|++++||+|++||+|+++|+||+.+++.++.+|+|.++++++||.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999884
No 30
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.48 E-value=1.1e-13 Score=144.10 Aligned_cols=79 Identities=38% Similarity=0.667 Sum_probs=75.0
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|.++|+||++|+ |++|+|.+|+|++||.|++||+||+|||||+.++|+|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus 1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 346899999999 9999999999999999999999999999999999999999999999999999999999999997543
No 31
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.47 E-value=1.3e-13 Score=119.59 Aligned_cols=63 Identities=33% Similarity=0.547 Sum_probs=61.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
--|++.+.+|++||.|++||+||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|.
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 349999999999999999999999999999999999999999999999999999999999985
No 32
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.44 E-value=4.3e-13 Score=114.67 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=60.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 46999999999999999999999999999999999999999999999999999999999987
No 33
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.43 E-value=3.5e-13 Score=140.18 Aligned_cols=75 Identities=32% Similarity=0.626 Sum_probs=72.4
Q ss_pred EEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+|+||+||+. ++|+|++|+|++||.|++||+|++|||||+.++|+|+.+|+|.++++++||.|.+|++|++|+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 99999999999999999999999999999999999999999999999999999999999999753
No 34
>PRK07051 hypothetical protein; Validated
Probab=99.42 E-value=1.2e-12 Score=102.93 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=64.8
Q ss_pred eEEEEccCCCCCCCeEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 90 LVDAVVPFMGESITDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..+|..| ..|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+
T Consensus 3 ~~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~ 76 (80)
T PRK07051 3 QHEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLA 76 (80)
T ss_pred ccEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEE
Confidence 3567777 5577888 99999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 018779 163 VIS 165 (350)
Q Consensus 163 ~i~ 165 (350)
.|+
T Consensus 77 ~i~ 79 (80)
T PRK07051 77 RIE 79 (80)
T ss_pred EEe
Confidence 985
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.38 E-value=1.3e-12 Score=114.79 Aligned_cols=68 Identities=24% Similarity=0.532 Sum_probs=63.6
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
..|.-| ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 85 ~~v~ap------~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 85 NVVTAP------MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CEEECC------CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 345555 56999999999999999999999999999999999999999999999999999999999987
No 36
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.37 E-value=3.4e-12 Score=94.99 Aligned_cols=62 Identities=40% Similarity=0.705 Sum_probs=59.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
.+|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999875
No 37
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.33 E-value=3.5e-12 Score=119.72 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=59.1
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++||.|.+|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 377777 99999999999999999999999999999999999999999999999999999984
No 38
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.31 E-value=2.6e-11 Score=89.73 Aligned_cols=73 Identities=44% Similarity=0.763 Sum_probs=70.4
Q ss_pred EEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 92 DAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
++.+|++|....+|+|.+|+++.|+.|..||+|+.++++|...++.++.+|++.+..+.+|+.+..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999875
No 39
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.27 E-value=1.2e-11 Score=109.16 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=59.0
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
-|++.+ |+|++||.|++||+||.||+||+.++|+|+++|+|.+|+++.|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 477775 99999999999999999999999999999999999999999999999999999874
No 40
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.24 E-value=2e-11 Score=127.75 Aligned_cols=64 Identities=22% Similarity=0.503 Sum_probs=61.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-.|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3599999999999999999999999999999999999999999999999999999999999963
No 41
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.23 E-value=2.6e-11 Score=106.88 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=58.4
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
-|++-. |+|++||.|++||+||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus 87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 366665 99999999999999999999999999999999999999999999999999999873
No 42
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.14 E-value=8.7e-11 Score=131.83 Aligned_cols=62 Identities=32% Similarity=0.619 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|.+|+|++||+|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999999884
No 43
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.09 E-value=2.3e-10 Score=119.83 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=56.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l 161 (350)
.|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++||.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999975
No 44
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.07 E-value=3.4e-10 Score=118.75 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++||.|..|++|+.|.
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999873
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.05 E-value=3.7e-10 Score=125.93 Aligned_cols=63 Identities=21% Similarity=0.473 Sum_probs=60.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 46
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.95 E-value=2.8e-09 Score=112.05 Aligned_cols=63 Identities=27% Similarity=0.553 Sum_probs=61.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
..|+|.+|+|++||.|++||+|++||++|+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 459999999999999999999999999999999999999999999999999999999999985
No 47
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.84 E-value=7.1e-09 Score=116.12 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 48
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.78 E-value=1.5e-08 Score=103.71 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=60.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|+.+.|++|++|.+||+|+.+|.|||...|.||.+|+|.++.+.+||.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 49
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.50 E-value=1.3e-07 Score=99.84 Aligned_cols=62 Identities=23% Similarity=0.524 Sum_probs=60.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|++++|++||.|++||+|+.+|.+|+...|.||.||+|.+++|+.||.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 39999999999999999999999999999999999999999999999999999999999875
No 50
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.47 E-value=2.3e-07 Score=75.25 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=52.3
Q ss_pred eEEEEccCCCCCCCeEEEEE-EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE
Q 018779 90 LVDAVVPFMGESITDGTLAK-FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET 154 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~-w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~ 154 (350)
...+-|-+.+..+ =|+|.. |++++||.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 4555555555443 467777 777889999999999999999999999999999999988877664
No 51
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.23 E-value=1.7e-06 Score=90.06 Aligned_cols=62 Identities=26% Similarity=0.483 Sum_probs=60.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|+++.|++|+.|++||+||.+..+|+.|-|.||.+|+|+++++..|+.+..|+.++.|+
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 49999999999999999999999999999999999999999999999999999999999886
No 52
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.14 E-value=3.6e-06 Score=93.47 Aligned_cols=66 Identities=30% Similarity=0.584 Sum_probs=62.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+.|++++|+|+.||.|..||+-+|||.+||.|++.|+.+|+| +...+||+.+..|++||.+..++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence 789999999999999999999999999999999999999987 778999999999999999987654
No 53
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.10 E-value=2.9e-06 Score=70.78 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=39.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~ 153 (350)
.-+++ .++||.|++||+|++||++|+..+|.||.+|+|.++.-+..+
T Consensus 33 ~~v~l-p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 33 LHIDL-PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred EEEEC-CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 33344 366999999999999999999999999999999998655544
No 54
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.10 E-value=3e-06 Score=86.04 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|.|.+++||+||.|++||.|+.++.+|+..-+.||.+|++..+.++.|++|.-|.+|..++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 38999999999999999999999999999999999999999999999999999999998763
No 55
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.01 E-value=2.4e-05 Score=79.07 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=58.5
Q ss_pred CeEEEEEEE-cCCCCeecCCCeEEEEEcC----------------------------------------------C--ee
Q 018779 103 TDGTLAKFL-KQPGDRVEMDEPIAQIETD----------------------------------------------K--VT 133 (350)
Q Consensus 103 ~eg~I~~w~-v~~Gd~V~~gd~l~evetd----------------------------------------------K--a~ 133 (350)
..|.|.+++ +++||.|++||+|++|++. | ..
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 359999999 9999999999999999841 0 13
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|.||++|+|.+..+.+|+.|..|++|+.|.+.+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 469999999999999999999999999999986554
No 56
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.01 E-value=1.7e-05 Score=77.13 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=32.6
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|.||++|+|..+.+++|+.|..|++|+.|...+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 468999999999999999999999999999986543
No 57
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.00 E-value=1.1e-05 Score=67.68 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=34.6
Q ss_pred CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
++|+.|++||+|++||++|+..+|.||.+|+|.++.-
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~ 77 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT 77 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 6699999999999999999999999999999999843
No 58
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.97 E-value=1.7e-05 Score=76.08 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=58.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
.+|+|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 569999999999999999999999976311
Q ss_pred ---------------------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|.||.+|+|..+.+++|+.+..|++|+.|...+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 246999999999999999999999999999998654
No 59
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.90 E-value=3.9e-05 Score=74.72 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=58.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC-----------------------------------e---------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK-----------------------------------V--------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK-----------------------------------a--------------- 132 (350)
..|.|.+++|++||.|++||+|+++++.. +
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999999731 0
Q ss_pred --------------------eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 133 --------------------TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 133 --------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
...|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 2468999999999999999999999999998876443
No 60
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.87 E-value=1.8e-05 Score=69.03 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=49.3
Q ss_pred EEEEccCCCCCCCeEEEEEEEcC-CCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQ-PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~-~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~ 153 (350)
..|-|-++... .=|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++....-+
T Consensus 31 ~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 31 VTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred EEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 44444444432 23667777776 8999999999999999999999999999999998876554
No 61
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.84 E-value=4.2e-05 Score=75.24 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.4
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~ 244 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH 244 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence 358999999999999999999999999999986553
No 62
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.75 E-value=6.4e-05 Score=64.24 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEE---eeCCCCEeC---CCC-EEEEEEeCC
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAVISKSG 168 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---~~~eG~~v~---vG~-~la~i~~~~ 168 (350)
.-++| .++|+.|++||+++.||++|+..+|.||.+|+|.++ +....+.+. -|+ -|+.|...+
T Consensus 40 ~~v~l-p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 40 VFVEL-PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred eEEEc-CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 33443 367999999999999999999999999999999999 444444554 444 788887543
No 63
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.70 E-value=0.00011 Score=73.74 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=32.6
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|.||++|+|..+.+++|+.|..|++|+.|...+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence 369999999999999999999999999999976544
No 64
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.70 E-value=9.3e-05 Score=73.93 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=57.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
..|+|.++++++||.|++||+|+++++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 469999999999999999999999987310
Q ss_pred ---------------------eceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCCC
Q 018779 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE 169 (350)
Q Consensus 133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~~ 169 (350)
...|.||++|+|.+.++++|+.|..| ++|+.|...+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 24699999999999999999999985 58988875443
No 65
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.67 E-value=8.5e-05 Score=72.59 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=32.3
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|.||++|+|..+.+.+|+.|..|++|+.|...+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~~ 239 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTRP 239 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCCc
Confidence 479999999999999999999999999999975543
No 66
>PRK12784 hypothetical protein; Provisional
Probab=97.64 E-value=0.00024 Score=55.09 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=59.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
-.|+|.+.++.++++|-+.++|+-|+++ +.-..|.--.+|.|.-+.+.+||.+..++.|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 4699999999999999999999999995 4556688899999999999999999999999999863
No 67
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.60 E-value=0.00017 Score=72.45 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=55.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
-.|.|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 359999999999999999999999985210
Q ss_pred ---------------------eceecCCCCeEEEEEeeCCCCEeCCCCE--EEEEEeCC
Q 018779 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGAK--IAVISKSG 168 (350)
Q Consensus 133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~~--la~i~~~~ 168 (350)
...|.||++|+|.+..+++|+.|..|++ |+.|...+
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 210 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 210 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecC
Confidence 2468999999999999999999999985 67775544
No 68
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.57 E-value=0.00013 Score=52.21 Aligned_cols=30 Identities=10% Similarity=0.336 Sum_probs=26.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
..|+|.+|+|++||.|++||+|++++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 469999999999999999999999987643
No 69
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.56 E-value=0.00021 Score=71.37 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=56.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|.|.++++++||.|++||+|++|+..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999998630
Q ss_pred --------------------eeceecCCCCeEEEEEeeCCCCEeCCCC--EEEEEEeCC
Q 018779 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKSG 168 (350)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~--~la~i~~~~ 168 (350)
....|.||++|+|.+..+.+|+.|..|+ +|+.|...+
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecC
Confidence 0247999999999999999999999985 688876544
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.50 E-value=0.00015 Score=51.85 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=32.7
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
++.|.+|.+|+|.++++++|+.|+.|++|+.|+...
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 367899999999999999999999999999998643
No 71
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.50 E-value=0.00012 Score=62.56 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=37.5
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~ 153 (350)
.++|+.|++||+++.||++|+..+|.||.+|+|.++.-..-+
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 467999999999999999999999999999999997755444
No 72
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.44 E-value=0.00029 Score=71.34 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=55.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
..|.|.++++++||.|++||+|++|.+...
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999975210
Q ss_pred ---------------------eceecCCCCeEEEEEeeCCCCEeCCCC--EEEEEEeC
Q 018779 133 ---------------------TIDVASPQAGVIQNLIAKEGETVEPGA--KIAVISKS 167 (350)
Q Consensus 133 ---------------------~~ei~ap~~G~l~~i~~~eG~~v~vG~--~la~i~~~ 167 (350)
...|.||++|+|....+++|+.|..|+ +|+.|...
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence 236899999999999999999999984 67777543
No 73
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.41 E-value=0.00039 Score=69.00 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=55.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|.|.+|++++||.|++||+|+++++.-
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 45999999999999999999999998731
Q ss_pred ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCC---CEEEEEEeCC
Q 018779 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPG---AKIAVISKSG 168 (350)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG---~~la~i~~~~ 168 (350)
....|.||++|+|..+.+..|+.|..| ++|+.|...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 221 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCC
Confidence 012699999999999999999999765 4788886544
No 74
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.37 E-value=0.00019 Score=69.04 Aligned_cols=65 Identities=18% Similarity=0.443 Sum_probs=48.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
.+|.| +|++++||.|++||+|++++++..
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 46999 999999999999999999997311
Q ss_pred -----------------ec----------eecCCCCeEEE-------------------------EEeeCCCCEeCCCCE
Q 018779 133 -----------------TI----------DVASPQAGVIQ-------------------------NLIAKEGETVEPGAK 160 (350)
Q Consensus 133 -----------------~~----------ei~ap~~G~l~-------------------------~i~~~eG~~v~vG~~ 160 (350)
.. .|.||++|+|. ++.+++|+.+..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 11 39999999999 999999999999999
Q ss_pred EEEEEeCC
Q 018779 161 IAVISKSG 168 (350)
Q Consensus 161 la~i~~~~ 168 (350)
|+.|...+
T Consensus 187 l~~i~~~~ 194 (328)
T PF12700_consen 187 LFTIADLS 194 (328)
T ss_dssp SEEEEEES
T ss_pred eeeeccCC
Confidence 99997654
No 75
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=97.23 E-value=0.0018 Score=59.76 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=59.8
Q ss_pred cccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCC-eEEEcCCccEEEEeecC
Q 018779 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD-DIIYRDYIDISFAVGTK 341 (350)
Q Consensus 263 ~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~-~I~~~~~vnIGIAVdT~ 341 (350)
.-|+++++.++|+|+|.+..++ . ++++...++.++.+|+.++|+|.-+++++ ++.+++.+|.+.+|-.+
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~--------~--~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKE--------K--GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHH--------T--T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHH--------c--CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence 4589999999999999977543 1 57899999999999999999999999987 99999999999999754
Q ss_pred -Ccee
Q 018779 342 -KVCD 345 (350)
Q Consensus 342 -~GLi 345 (350)
++..
T Consensus 94 ~~~tF 98 (206)
T PF00302_consen 94 DDETF 98 (206)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 4554
No 76
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.22 E-value=0.0008 Score=65.43 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.4
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.|.||++|+|..+.+.+|+.|.. ++|+.|...+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 56799999999999999999986 7888887544
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.11 E-value=0.00081 Score=57.04 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=32.5
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCC
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKE 151 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~e 151 (350)
.++|+.|++||+++.||++|...++.||.+|+|.++.-..
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l 78 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL 78 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence 4568899999999999999999999999999998875443
No 78
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.01 E-value=0.0019 Score=61.17 Aligned_cols=60 Identities=33% Similarity=0.534 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+|.+ +..++-||.|++||+|+.|+. .+|.||.+|+|.- ++++|-.|..|.-|+.|+.-.+
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence 4555 449999999999999999975 7999999999865 7999999999999999987553
No 79
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0011 Score=56.73 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=43.1
Q ss_pred eEEEEccCCCCCCCeEEEEEE-EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779 90 LVDAVVPFMGESITDGTLAKF-LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w-~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~ 150 (350)
...|-|-+.+.. .=|.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-.
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 344444443332 12444433 4567889999999999999999999999999999876543
No 80
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.77 E-value=0.0028 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=31.9
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-.|.||++|+|.++++++||.|..|++|+.++...
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 35899999999999999999999999999998654
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.56 E-value=0.0078 Score=60.00 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=29.4
Q ss_pred eecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeC
Q 018779 135 DVASPQAGVIQNLIA-KEGETVEPGAKIAVISKS 167 (350)
Q Consensus 135 ei~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~ 167 (350)
.|.||++|+|..+.+ .+|+.|..|++|+.|...
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 489999999999876 799999999999999754
No 82
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.47 E-value=0.0051 Score=57.57 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.6
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.|.||++|+|..+.+.+|+.|..|++|+.|.+.+.
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~ 124 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGA 124 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCc
Confidence 47999999999999999999999999999976543
No 83
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=96.42 E-value=0.011 Score=55.03 Aligned_cols=69 Identities=12% Similarity=0.262 Sum_probs=59.8
Q ss_pred cEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCCc
Q 018779 265 ALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKV 343 (350)
Q Consensus 265 Ph~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~G 343 (350)
|.+.++.++|+|+|.+.-++ . ++++.+.++-|+.+|+.++|+|--+++++++++++.+|.+..+-.+++
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~--------~--~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~ 99 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK--------N--KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT 99 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH--------c--CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCC
Confidence 45999999999999965432 2 578999999999999999999999999999999999999999986553
No 84
>PRK06748 hypothetical protein; Validated
Probab=96.31 E-value=0.0073 Score=47.94 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=30.7
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-|.||..|.|.++++++||.|..|++|+.|++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 37899999999999999999999999999998
No 85
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.05 E-value=0.0099 Score=51.58 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=32.2
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
...|.||..|++.++++++||.|+.||+||+|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence 5679999999999999999999999999999985
No 86
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.04 E-value=0.021 Score=55.52 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=47.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc---CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet---dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
+=+...+++.||.|++||+|++|=. +....++.||.+|+|.- ....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 4466778999999999999999854 55678899999999854 5566789999999876
No 87
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.03 E-value=0.013 Score=42.90 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=30.2
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.+.||++|+|.++++++|+.|..|++|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 368999999999999999999999999999753
No 88
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.98 E-value=0.011 Score=48.55 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=39.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK 150 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~ 150 (350)
.-|.-.+-.|++||+|++||.|++.+ +-....|-|+.+|+|..|.-.
T Consensus 37 h~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 37 HIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred cCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence 34566678999999999999999997 456889999999999987543
No 89
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.86 E-value=0.019 Score=43.40 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.4
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.|.||..|.|.++++++||.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5789999999999999999999999999998644
No 90
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.84 E-value=0.025 Score=56.42 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=47.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
.+=+..++++.||.|++||+|++|=. +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 34567889999999999999999854 3344557999999984 46677789999999876
No 91
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.67 E-value=0.038 Score=53.31 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=44.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
+.++.++.||.|++||+|++|-. .....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence 45679999999999999999964 2234789999999984 35566678888888876
No 92
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.54 E-value=0.046 Score=54.45 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=31.3
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|.||.+|+|.+..+.+|+.|..|.+|+.+-..+
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 45899999999999999999999999999886543
No 93
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.46 E-value=0.053 Score=53.08 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=46.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 4466788999999999999999864 34567899999999854 33445688888888775
No 94
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.44 E-value=0.023 Score=54.09 Aligned_cols=43 Identities=30% Similarity=0.550 Sum_probs=36.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCe--eceecCCCCeEEEEEeeCCCC
Q 018779 108 AKFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~eG~ 153 (350)
-+.+|+|||+|++||+|++ ||- .+-+.||.+|+|.+|.-.+--
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~rR 85 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGERR 85 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCCCc
Confidence 5889999999999999997 665 466899999999998775443
No 95
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.41 E-value=0.041 Score=54.22 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
=+....++.||.|++||+|++|=. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 264 Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 264 GLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 345688999999999999999964 33567899999999965 5556788999999876
No 96
>PRK07051 hypothetical protein; Validated
Probab=95.41 E-value=0.035 Score=43.35 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
.+|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 68999999999999999999999986
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.98 E-value=0.043 Score=44.20 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=25.8
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 367888888888888888888888888887764
No 98
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.86 E-value=0.05 Score=46.77 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=32.7
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam 95 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM 95 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 56799999999999999999999999999999864
No 99
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.75 E-value=0.055 Score=41.52 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=29.2
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (350)
.+.++|.-| .+|+|.++++++||.|..||+|+.|
T Consensus 41 K~~~~v~a~------~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 41 KMEMEVEAP------VSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SEEEEEEBS------SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred ccceEEECC------CCEEEEEEEECCCCEECCCCEEEEC
Confidence 345667777 6899999999999999999999986
No 100
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.73 E-value=0.11 Score=59.08 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCCCCCe----------EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeC
Q 018779 87 SGDLVDAVVPFMGESITD----------GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVE 156 (350)
Q Consensus 87 ~~~~~~i~~P~lG~~m~e----------g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~ 156 (350)
.|....|++-.+|+.-.+ |...++.+++++.+..++.....+.+ -..+|.||..|.|.++++++||.|+
T Consensus 1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235 1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeC
Confidence 455666777677765333 45666778888877777665544322 2357999999999999999999999
Q ss_pred CCCEEEEEEeCC
Q 018779 157 PGAKIAVISKSG 168 (350)
Q Consensus 157 vG~~la~i~~~~ 168 (350)
.|++|++|+...
T Consensus 1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235 1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred CCCEEEEEEecc
Confidence 999999998643
No 101
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.31 E-value=0.068 Score=52.56 Aligned_cols=41 Identities=32% Similarity=0.414 Sum_probs=35.5
Q ss_pred EEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 125 AQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 125 ~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+.||.+ .+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 344554 68899999999999999999999999999999864
No 102
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.28 E-value=0.095 Score=50.55 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=33.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l 161 (350)
+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+.. .-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CCccCCCCcc
Confidence 3455667777888877888877732 23355677788887754322 2344445443
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.20 E-value=0.041 Score=52.20 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=24.7
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|.++..|+|.+|++++||.|+.|++|+.|+...
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 46889999999999999999999999999998643
No 104
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.16 E-value=0.083 Score=46.64 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=32.5
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|.||..|+|.++++++||.|..|++|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999997543
No 105
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.92 E-value=0.074 Score=46.78 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=35.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-eecCCCCeEEEEEe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLI 148 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~ 148 (350)
-||..+-..+.+||+|.+||.|+-+.|-|-.+ -+.||++|+|.-+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 57888889999999999999999999999875 49999999986554
No 106
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.90 E-value=0.086 Score=51.22 Aligned_cols=43 Identities=26% Similarity=0.504 Sum_probs=36.5
Q ss_pred EEEcCCeeceecCCCC---eEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 126 QIETDKVTIDVASPQA---GVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 126 evetdKa~~ei~ap~~---G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.|+...-...|.++.+ |+|.+|++++||.|+.|++|+.|+...
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 4555545667889999 999999999999999999999998653
No 107
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.88 E-value=0.067 Score=51.97 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=32.9
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+.|.|+.+|+|.++++++||.|..|++|+.|+...
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence 678999999999999999999999999999998643
No 108
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.49 E-value=0.17 Score=49.98 Aligned_cols=61 Identities=28% Similarity=0.501 Sum_probs=47.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc---CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIET---DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet---dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
++=+++.+++.||.|++||.|+.|=+ -+...||.|+.+|+|....- --.++.|+.+..+..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence 56688999999999999999998865 47899999999999976532 234555666666543
No 109
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.38 E-value=0.057 Score=51.22 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=20.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..|.|.+++|++||.|++||+|++++.-
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4599999999999999999999999964
No 110
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=93.15 E-value=0.18 Score=49.99 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.+.-+.++.|+....=..-..|+..+ ...|.++.+|.|.++++++||.|+.|++|+.|+..
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 44445555555443333445666553 55899999999999999999999999999999753
No 111
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.14 E-value=0.16 Score=51.56 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.|.-..++.|+.-..-+....|+.. -.++|.++.+|.|.++++++||.|+.|++|+.|+...
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 3445555666655555567788864 5688999999999999999999999999999998643
No 112
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=93.10 E-value=0.25 Score=45.45 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=63.2
Q ss_pred cccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEeecCC
Q 018779 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKK 342 (350)
Q Consensus 263 ~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAVdT~~ 342 (350)
..||+....+.|+|.+-.. +|+ . +++|.++++.|+.+++.++++|.-++.+|...+++.++..+.|..++
T Consensus 27 ~~p~y~i~~~LDvtn~~~~---vk~----~---~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~ 96 (219)
T COG4845 27 QYPHYDINLQLDVTNFYGY---VKE----N---GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE 96 (219)
T ss_pred ccceEeeeeeeehhHHHHH---HHH----c---CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence 4799999999998766543 442 1 78999999999999999999999999999999999999999999954
Q ss_pred -ceee
Q 018779 343 -VCDN 346 (350)
Q Consensus 343 -GLi~ 346 (350)
++++
T Consensus 97 ~e~Fs 101 (219)
T COG4845 97 TETFS 101 (219)
T ss_pred CcEEE
Confidence 4544
No 113
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.10 E-value=0.09 Score=54.04 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=38.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
.|.-.+-+|++||+|+.||+|++-... ..+.+-||.+|+|..|.-
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 466667899999999999999987643 678899999999999953
No 114
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=93.06 E-value=0.17 Score=50.57 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=45.0
Q ss_pred EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.++.|+....-+....|+..+ ..+|.++.+|+|.++.+++||.|+.|++|+.|+..
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 445555444555667777664 67899999999999999999999999999999854
No 115
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.02 E-value=0.39 Score=51.18 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=32.3
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-+|.||..|.|.++++++||.|..|++|+.|+...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999998644
No 116
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=92.90 E-value=0.094 Score=50.28 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=28.7
Q ss_pred EEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 124 IAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 124 l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-..|+. -...|.++.+|.| ++++++||.|..|++|+.|+...
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 345554 4567899999999 99999999999999999998643
No 117
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.90 E-value=0.16 Score=44.74 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
.+|+|.+|+++.||.|..||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 68999999999999999999999985
No 118
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.81 E-value=0.16 Score=48.62 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...|.+|.+|+|.++++++||.|..|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 56899999999999999999999999999999754
No 119
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.80 E-value=0.26 Score=39.63 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=25.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+|.|..|.+++|+.|.+|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 5899999999999999999999999853
No 120
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=92.71 E-value=0.17 Score=44.75 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
.+|+|.+|+++.||.|+.||+|++|+
T Consensus 131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 131 VAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 68999999999999999999999985
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.51 E-value=0.2 Score=49.88 Aligned_cols=43 Identities=14% Similarity=0.383 Sum_probs=36.7
Q ss_pred EEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 126 QIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 126 evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.|..+.....|.++.+|+|.++++++||.|..|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 4456666777889999999999999999999999999998654
No 122
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=92.31 E-value=0.15 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=32.1
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.|.++.+|.|.++++++||.|+.|++|+.|+..+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 45999999999999999999999999999998643
No 123
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=92.27 E-value=0.13 Score=40.01 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=21.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+-+.=+.++++.||.|++||+||+|=++.
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 33444688999999999999999987654
No 124
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.14 E-value=0.24 Score=50.81 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=34.9
Q ss_pred EEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 127 IETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|..+.-...|.++..|+|.+|+|+|||.|..|++|+.|+...
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 333334567889999999999999999999999999998643
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.12 E-value=0.28 Score=49.01 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=43.5
Q ss_pred EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.++.|+.-..-.....|+.+ -..+|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 44444433334455677765 367999999999999999999999999999999754
No 126
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.08 E-value=0.23 Score=50.23 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.1
Q ss_pred eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-...|.++.+|+|.++++++||.|+.|++|+.|+...
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 3458999999999999999999999999999998654
No 127
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.08 E-value=0.14 Score=52.74 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=37.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
-|.-.+-+|++||+|++||+|++-... ....+-||.+|+|..|..
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 355667899999999999999966544 578899999999999954
No 128
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.64 E-value=0.22 Score=50.06 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=33.1
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+.|.++.+|.|.++++++||.|+.|++|+.|+..+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence 788999999999999999999999999999998643
No 129
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.63 E-value=0.22 Score=48.57 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=32.6
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.+.|.++..|+|.++++++||.|+.|++|+.|+..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 56899999999999999999999999999999753
No 130
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=91.51 E-value=0.28 Score=50.63 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=26.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+|+|.+|++++||.|..||+|++|+.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 6899999999999999999999999864
No 131
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=91.42 E-value=0.31 Score=46.66 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 68999999999999999999999986
No 132
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=91.13 E-value=0.38 Score=46.63 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.3
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
.++|..| .+|+|.++++++||.|..|++|++++.+.
T Consensus 45 ~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 45 TNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred eEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3456666 78999999999999999999999999765
No 133
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=91.08 E-value=0.23 Score=49.32 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=36.0
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCe--eceecCCCCeEEEEEeeCCCCEe
Q 018779 109 KFLKQPGDRVEMDEPIAQIETDKV--TIDVASPQAGVIQNLIAKEGETV 155 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa--~~ei~ap~~G~l~~i~~~eG~~v 155 (350)
..+|++||.|++||+|+| ||- -+-+.||.+|+|..|+-.+--.+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~KRvL 87 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEKRVL 87 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccceee
Confidence 458999999999999998 554 47799999999999876655443
No 134
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.52 E-value=0.26 Score=50.46 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=36.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (350)
|.-.+-.|++||+|+.||+|++.+ +.....|-||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444567999999999999999984 3468999999999998864
No 135
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.38 E-value=0.79 Score=44.40 Aligned_cols=40 Identities=15% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc--CCeeceecCCCCeEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET--DKVTIDVASPQAGVIQN 146 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet--dKa~~ei~ap~~G~l~~ 146 (350)
|.+..++.||.|++||+|++|-. .....++.||.+|+|.-
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~ 282 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIG 282 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEE
Confidence 33445555555555555555532 11123455555555543
No 136
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=90.16 E-value=0.35 Score=48.64 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=37.2
Q ss_pred eEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 123 PIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 123 ~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
....|+.. -.++|.++.+|+|.++.+++||.|+.|++|+.|+..
T Consensus 56 ~~G~v~a~-~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 56 LPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEEEE-EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence 33456543 377899999999999999999999999999999864
No 137
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=89.95 E-value=0.29 Score=38.85 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.=++|++++||.|++||+|++++-
T Consensus 45 ~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 45 LEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEEeCCCCCccCCcEEEEEEe
Confidence 345699999999999999999984
No 138
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=89.93 E-value=0.26 Score=43.67 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=43.9
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~ 153 (350)
+++.-+.||+ +..++ +-++|-.|.+||.++-||+=|+.-||.+|.+|.|.+|.-+-.|
T Consensus 72 t~~A~~~LGd----vv~ve-LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 72 TDFAQEHLGD----VVYVE-LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred hhhhhhhcCc----eEEEE-cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 3444555654 22222 3467888999999999999999999999999999998765544
No 139
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.52 E-value=0.34 Score=49.03 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..|.|.+.+|++||.|++||+|+++++.
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 5699999999999999999999999974
No 140
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=89.48 E-value=1.1 Score=42.86 Aligned_cols=60 Identities=32% Similarity=0.467 Sum_probs=48.4
Q ss_pred EEEEEEEcCCCCeecCCCeE--EEEEc--CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 105 GTLAKFLKQPGDRVEMDEPI--AQIET--DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l--~evet--dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
+=+..+.++.||.|++||+| .++-. +-...++.||.+|+| +...+.-.|..|+.|+.+..
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 44568999999999999999 54432 233468999999998 56888999999999998863
No 141
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=89.15 E-value=0.79 Score=34.41 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=28.0
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (350)
+..++.-| .+|+|++|+++.|+.|..|+.|++|
T Consensus 41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 34556666 6899999999999999999999875
No 142
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=89.05 E-value=0.75 Score=46.62 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred CeEEEEEcCC-eeceecCCCCeEEEEEe-eCCCCEeCCCCEEEEEEeC
Q 018779 122 EPIAQIETDK-VTIDVASPQAGVIQNLI-AKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 122 d~l~evetdK-a~~ei~ap~~G~l~~i~-~~eG~~v~vG~~la~i~~~ 167 (350)
+....|+-|. -...|.++++|+|.+++ +.+||.|+.|++|+.|+..
T Consensus 111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 3455666543 35689999999999998 9999999999999999854
No 143
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=88.30 E-value=1.1 Score=42.49 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=35.6
Q ss_pred CeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 122 d~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.....++. .-..++.++..|.|.++++++||.|+.|++|+.++.
T Consensus 56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 33444444 333478888999999999999999999999999987
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.18 E-value=0.46 Score=48.76 Aligned_cols=30 Identities=3% Similarity=0.096 Sum_probs=26.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
..|.|.+++|++||.|++||+|++++..-.
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 459999999999999999999999987533
No 145
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.05 E-value=0.71 Score=49.12 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||..|.|.++++++||.|..|++|+.|+...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999998644
No 146
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=88.00 E-value=0.8 Score=46.78 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=26.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
.+|+|.++++++||.|..||+|++|+++.
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 78999999999999999999999998653
No 147
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.93 E-value=0.45 Score=51.58 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (350)
|.-.+-+|++||+|.+||+|++-+ .-..+.|-||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 555567999999999999999764 2357899999999998864
No 148
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=87.28 E-value=1.3 Score=31.55 Aligned_cols=31 Identities=42% Similarity=0.619 Sum_probs=26.0
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (350)
..+..| ..|++.++++++|+.|..|++|+++
T Consensus 44 ~~i~a~------~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAP------AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECC------CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 455555 5688999999999999999999875
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=86.85 E-value=1.9 Score=46.06 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..+|.||..|+|.++.+++||.|..|++|+.|+..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieam 556 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEecc
Confidence 36799999999999999999999999999999854
No 150
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.34 E-value=0.96 Score=48.22 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=32.6
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..+|.||..|.|.++++++||.|..|++|+.|+...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 457999999999999999999999999999997543
No 151
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.28 E-value=1.4 Score=38.15 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=38.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeece-ecCCCCeEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTID-VASPQAGVIQN 146 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~e-i~ap~~G~l~~ 146 (350)
-||-++--....|++|.+||+++-|.|-|..+- +.+|.+|++.=
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvy 142 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVY 142 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEE
Confidence 689999999999999999999999999998765 79999998754
No 152
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=86.14 E-value=1.3 Score=45.18 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=27.2
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
.+|+|.++++++||.|..|++|++||++.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 78999999999999999999999999764
No 153
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=86.13 E-value=0.71 Score=43.89 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=26.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
..|.|.+++|++||.|++||+|+++++
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 679999999999999999999999998
No 154
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=84.31 E-value=1.1 Score=44.75 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=26.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..|+|.+.+|++||+|+.|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 5799999999999999999999999986
No 155
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=84.18 E-value=0.82 Score=47.58 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=35.5
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe
Q 018779 108 AKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI 148 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~ 148 (350)
...+|++||+|.+||+|.+=+- ...-+-||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5669999999999999998875 78899999999999987
No 156
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=84.06 E-value=1.3 Score=44.97 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=26.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+|+|.+|++++||.|..|++|++|+.+
T Consensus 50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 7899999999999999999999999865
No 157
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=83.89 E-value=1.9 Score=39.12 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=40.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKI 161 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~l 161 (350)
..|..| +++|+.+++||.+.-++-. .++++--|.+ .++.+++|+.|..|+.|
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tl 181 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETV 181 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEE
Confidence 455444 5899999999999999977 5566555554 27789999999999955
No 158
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=83.59 E-value=1 Score=38.46 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|+=-++++++||+|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4666899999999999999999987543
No 159
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=83.50 E-value=2 Score=38.12 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeece--------ecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTID--------VASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~e--------i~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
+|+--+-++++||+|++||+|+++.-|+..-- |-+-.+-+-.-+....+-.+..|+.+..+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 47777889999999999999999987643211 22222222122223333367777777654
No 160
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=83.20 E-value=1.5 Score=46.08 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=30.8
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-.+.||..|+|..+.+++|++|..|++|++++.
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEe
Confidence 348999999999999999999999999999985
No 161
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=83.20 E-value=1.5 Score=44.49 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=27.7
Q ss_pred CCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
-.+|.|.++++++||.|..|++|+.|+++-.
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa 44 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA 44 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence 4589999999999999999999999997543
No 162
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=83.09 E-value=1.5 Score=44.64 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
...+|+|.+|++++||.|..|++|++|+++..
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 77 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVEDS 77 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccCC
Confidence 34789999999999999999999999987653
No 163
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.03 E-value=2.9 Score=47.97 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=31.8
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.+|.||..|+|.++++++||.|+.|++|+.++..
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leam 1110 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAM 1110 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence 5699999999999999999999999999999863
No 164
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=82.66 E-value=1.7 Score=50.16 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=32.3
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|.||..|.|.++++++||.|+.|++|+.|+...
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 345899999999999999999999999999997643
No 165
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.57 E-value=1.1 Score=38.01 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|+=-++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4556789999999999999999987553
No 166
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=82.33 E-value=2.4 Score=39.01 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=41.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCC-EEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGA-KIAV 163 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~-~la~ 163 (350)
.+.|..| +++||.+++||.+..++-. .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 149 ~r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 149 ARRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred ccEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 3455554 6899999999999999977 4555555544 278999999999998 5554
No 167
>PRK12784 hypothetical protein; Provisional
Probab=82.28 E-value=2.2 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.2
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+|.||+-|+|.++++++++.|..=++|+.|..-+.
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 58999999999999999999999999999987544
No 168
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=81.95 E-value=2.2 Score=38.31 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|+=-+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4666789999999999999999998654
No 169
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=81.77 E-value=0.94 Score=39.02 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=22.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
+|+--+|++++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 46668999999999999999999986543
No 170
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=79.43 E-value=2.6 Score=42.18 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=32.5
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+.|-+.++|+|.++.+..++.|+.|++|+.|++..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 456889999999999999999999999999998643
No 171
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=79.39 E-value=1.9 Score=46.10 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=17.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
+|+=-+++|++||+|++||+|+++.-|
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHH
Confidence 344556677777777777777766654
No 172
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=79.03 E-value=2.8 Score=38.29 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=48.8
Q ss_pred EEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 93 AVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 93 i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
+.|=.+|.. .=|.|+-|.. ++|+.|++||.+..++= -.++.+--|.+-+. ++.+++|+.|..|+.|++
T Consensus 134 v~~v~Vga~-~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGAL-LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEEEEeccc-eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 444445543 3466666665 69999999999999986 45555544444333 889999999999999873
No 173
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=78.65 E-value=4.7 Score=36.21 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=26.5
Q ss_pred CeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 122 EPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 122 d~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
|+|..|--|-+.++ -.| -+.++++||.|..|++|+.++.
T Consensus 87 eiLIHiGiDTV~L~----G~g--F~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 87 ELFVHFGIDTVELK----GEG--FKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEEEEEeecccccC----CCc--eEEEecCCCEEeCCCEEEEEcH
Confidence 45555555532222 224 3678999999999999999974
No 174
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=76.94 E-value=3.3 Score=42.52 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=26.9
Q ss_pred CeEEEEEEEcCCCCe-ecCCCeEEEEEcCC
Q 018779 103 TDGTLAKFLKQPGDR-VEMDEPIAQIETDK 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~-V~~gd~l~evetdK 131 (350)
.+|+|.+|++++||. |..|++|++||.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 679999999999999 99999999998754
No 175
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=75.02 E-value=3 Score=44.86 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
+|+=-++++++||+|++||+|+++.-+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHH
Confidence 344457777777777777777777654
No 176
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=74.91 E-value=7.5 Score=42.85 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=30.2
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.|-||..|+|.++.+++||.|+.|++|+.|+.
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehhh
Confidence 48899999999999999999999999999975
No 177
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=74.73 E-value=2.9 Score=40.37 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..-..|++++||.|++||+|+++|-+
T Consensus 63 ~i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 63 SIEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred ceEEEEEcCCCCEeCCCCEEEEEecc
Confidence 34568999999999999999988843
No 178
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=73.33 E-value=4.4 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=26.6
Q ss_pred CCeEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 018779 102 ITDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (350)
..+|+|.+|++++|| .|+.|++|++++.+.
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 378999999999995 799999999998653
No 179
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=71.93 E-value=3.7 Score=44.26 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=30.4
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-.|-||..|+|.+|.+++|+.|..|++|+++..
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSA 1139 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeeec
Confidence 347899999999999999999999999999874
No 180
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=71.43 E-value=7.1 Score=37.41 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=42.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
..|..|.. +|+.|++||.+..++=. .++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 44556654 49999999999999975 5555544433 33 6789999999999999764
No 181
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=71.35 E-value=7 Score=48.11 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=18.0
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 018779 109 KFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~eve 128 (350)
..+|++||.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999865
No 182
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=71.09 E-value=7.2 Score=39.47 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=27.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
.+|+|.++++++||.|..|++|++++.+..
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 689999999999999999999999987653
No 183
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=71.02 E-value=5.1 Score=43.27 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 45667888999999999999999887644
No 184
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=69.36 E-value=5.4 Score=38.27 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=15.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
+--++|++++||.|++||+|++++
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 444567777777777666666665
No 185
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.96 E-value=5 Score=38.78 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEc
Q 018779 108 AKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (350)
++|++++||.|++||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6889999999999988888874
No 186
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=68.02 E-value=6.3 Score=37.68 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=29.1
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
..-|.||.+|++.. .++-||.|..|++|+.|..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 34589999999865 9999999999999999964
No 187
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.42 E-value=6.1 Score=38.35 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-++|++++||.|++||+|++++-
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEe
Confidence 356899999999999988888874
No 188
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=65.31 E-value=15 Score=36.88 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=40.6
Q ss_pred EcCCCCeecCCCeEEEEE-cCCeece--ecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 111 LKQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+||.|..||.|.+|. |.-..+- +|.-..|.|.. .+.+|+ ..+-+.++.++..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~-~~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEE-EecCCC-eeEEEEEEEEEeCC
Confidence 478999999999999886 3334444 46667999866 566777 34567888888644
No 189
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=65.05 E-value=7 Score=41.31 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCeEEEEEEEcCCCC-eecCCCeEEEEEcC
Q 018779 102 ITDGTLAKFLKQPGD-RVEMDEPIAQIETD 130 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd-~V~~gd~l~evetd 130 (350)
..+|+|.++++++|| .|..|++||++..+
T Consensus 161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 161 MEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 368999999999996 79999999988543
No 190
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.79 E-value=6.8 Score=37.89 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (350)
-++|++++|+.|++||+|++++-
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 37899999999999998888874
No 191
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=64.46 E-value=6.9 Score=38.02 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=17.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~eve 128 (350)
-++|++++||.|++||+|++++
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 4688888888888888888766
No 192
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=64.22 E-value=7 Score=37.58 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-++|++++|+.|++||+|++++-
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 445788888888888888888774
No 193
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.58 E-value=9.3 Score=36.97 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=30.3
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..-+.||..|++ ...++.|+.|..|++|++|-+.-
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 556899999987 67899999999999999997643
No 194
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=63.57 E-value=15 Score=39.11 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=42.3
Q ss_pred EcCCCCeecCCCeEEEEE-cCCeece--ecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 111 LKQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+||.|..||++.+|. |.-..+- +|.-..|+|..| +.+|+ ..+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEeeCC
Confidence 688899999999999765 4433333 566678999764 67777 56789999998633
No 195
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=63.50 E-value=7.3 Score=37.20 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=38.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
|.|+ | ..+|+.|++||.+..++=. .++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4454 3 4578899999998888877 666655444322224567888888888888653
No 196
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=63.46 E-value=7.4 Score=37.29 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
+.=++|++++|+.|++||+|++++-
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4456899999999999888888874
No 197
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=62.95 E-value=7.6 Score=37.95 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=13.7
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 018779 108 AKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~eve 128 (350)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 466666666666666666665
No 198
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.78 E-value=7.8 Score=37.86 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=15.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~eve 128 (350)
-++|++++||.|++||+|++++
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEE
Confidence 3577777777777777766655
No 199
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.54 E-value=7.9 Score=37.67 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-.+|++++||.|++||+|++++-
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEEE
Confidence 345799999999999998888874
No 200
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=62.35 E-value=6.4 Score=40.52 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=19.5
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEE
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~eve 128 (350)
++.+.=+.|+++.||.|++||+|++|=
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 334444678888888888888888776
No 201
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=62.05 E-value=6.5 Score=40.50 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=22.9
Q ss_pred CCCCeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 100 ESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 100 ~~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
+-++.+.=+.|+++.||.|++||+||+|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 344445556889999999999999998873
No 202
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.61 E-value=8.4 Score=37.18 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEc
Q 018779 108 AKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (350)
++|++++|+.|++||+|++++-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5888888888888888888773
No 203
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.52 E-value=8.4 Score=37.51 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-++|++++|+.|++||+|++++-
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 345788888888888888777773
No 204
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=61.17 E-value=8.6 Score=37.81 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-++|++++||.|++||+|++++=
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 445799999999999888888873
No 205
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=60.76 E-value=19 Score=38.99 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.1
Q ss_pred eeCCCCEeCCCCEEEEEEe
Q 018779 148 IAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 148 ~~~eG~~v~vG~~la~i~~ 166 (350)
++++||.|+.||+|+.++.
T Consensus 585 ~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 585 LVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 3778888888888888874
No 206
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.71 E-value=11 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..-+.||.+|.+ ...++.||.|..|++|+.|-+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCC
Confidence 567899999987 5579999999999999999864
No 207
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.54 E-value=9 Score=37.16 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=20.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
..-++|++++||.|++||+|++++=
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEE
Confidence 3556888888888888888888873
No 208
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=60.49 E-value=8.5 Score=39.65 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
...|.|.++..+|||.+..|++|++|+++-.
T Consensus 50 MeeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred ccCCceeeEeeccCCccCCCceEEEEecccc
Confidence 5689999999999999999999999997543
No 209
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.26 E-value=12 Score=36.04 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=29.3
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..+.||.+|++. ..++.||.|..|++|+.|.+.
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~ 252 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDP 252 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECC
Confidence 578999999985 589999999999999999763
No 210
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.80 E-value=9.4 Score=36.94 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
--++|++++||.|++||.|++++-
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 345788888888888888887763
No 211
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.76 E-value=12 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=30.2
Q ss_pred eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...-+.||..|++ ...++.||.|..|++|+.|-+.
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECC
Confidence 4567899999987 5688999999999999999754
No 212
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.43 E-value=9.6 Score=36.89 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcc-cHHHHHHHHHHHHHhh
Q 018779 253 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKL-GLMSGFVKAAVSALQH 313 (350)
Q Consensus 253 IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkl-s~~~fliKAva~AL~~ 313 (350)
+.+.+...++..|+.. .+|.++.+.+..+.+... ...+.| .+.+=.+|.++..|++
T Consensus 169 i~~av~~~r~~~~~~k--IeVEv~~leea~~a~~ag---aDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 169 LEEAIRRAKEFSVYKV--VEVEVESLEDALKAAKAG---ADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHhCCCCc--EEEEeCCHHHHHHHHHcC---cCEEEECCCCHHHHHHHHHHHHh
Confidence 3333444444456544 566666788777666431 112222 4556677777777754
No 213
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=59.41 E-value=9.8 Score=36.48 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.6
Q ss_pred EEEEcCCCCeecCCCeEEEEEc
Q 018779 108 AKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (350)
++|++++|+.|++||+|++++=
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4799999999999988888873
No 214
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=58.71 E-value=13 Score=37.28 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.4
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.-+.||..|.+ ...++.||.|..|++|+.|-+..
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 45899999987 56899999999999999997643
No 215
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=58.34 E-value=18 Score=27.90 Aligned_cols=30 Identities=37% Similarity=0.601 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeCCCCEeCCCCEEEEEEeCCCc
Q 018779 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSGEG 170 (350)
Q Consensus 139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~~~ 170 (350)
+..|+ .++++.||.|..|++|++|-...+.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEcCChH
Confidence 45675 6789999999999999999876654
No 216
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=57.83 E-value=8.9 Score=39.12 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.1
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
++.+.=+.++++.||.|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 55555578999999999999999998743
No 217
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=57.76 E-value=14 Score=35.25 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=28.8
Q ss_pred cCCCCeecC-CCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 112 KQPGDRVEM-DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 112 v~~Gd~V~~-gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
++.|+.|.+ |++|++.. .-++.+|++|.+ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 445777777 88877732 267777888765 4555555556666553
No 218
>COG3608 Predicted deacylase [General function prediction only]
Probab=57.68 E-value=17 Score=36.10 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=33.5
Q ss_pred EEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 124 IAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 124 l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
....+++ .--+.||..|.| ..+++.||.|..|++|++|-..+
T Consensus 249 ~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 249 GLALPSS--DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred eeecccc--cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 3344444 445899999987 78999999999999999998743
No 219
>PRK02693 apocytochrome f; Reviewed
Probab=56.42 E-value=29 Score=33.63 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=34.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
..|+|.++..++ +|.-...|+|+.-..-++.=-.| .++++++||.|+.|++|-.
T Consensus 203 ~~G~i~~I~~~e-----~Gg~~vtI~~~dG~~v~~~iP~G--peliV~eG~~v~~dqpLTn 256 (312)
T PRK02693 203 AAGTITSIETGE-----DGGYVVTITTEDGEAVTETIPAG--PELIVKEGDTVEAGDPLTN 256 (312)
T ss_pred CCcEEEEEEecC-----CCceEEEEEcCCCCEEEEecCCC--CeEEEecCcEEecCCcccC
Confidence 567888876643 35556666665433222222234 3678999999999999853
No 220
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=56.16 E-value=34 Score=40.38 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=56.3
Q ss_pred CCceEEEEccCCCCCCCeEEEEE-------EEcC---CCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeC
Q 018779 87 SGDLVDAVVPFMGESITDGTLAK-------FLKQ---PGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVE 156 (350)
Q Consensus 87 ~~~~~~i~~P~lG~~m~eg~I~~-------w~v~---~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~ 156 (350)
+|...++.|-.|+.+ |-++. .+.| .|-++.-|--.|.+|-|-=...+.+|..|.+.+.+++.|+-|.
T Consensus 632 ngs~~~v~v~~L~dg---gLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~ 708 (2196)
T KOG0368|consen 632 NGSEVTVGVHQLSDG---GLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVE 708 (2196)
T ss_pred cCcEEEEEEEEecCC---cEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCcee
Confidence 355667777777764 33222 2222 2445566777777776666777999999999999999999999
Q ss_pred CCCEEEEEEe
Q 018779 157 PGAKIAVISK 166 (350)
Q Consensus 157 vG~~la~i~~ 166 (350)
+|++-|.|+.
T Consensus 709 ~Gq~YAeiEv 718 (2196)
T KOG0368|consen 709 AGQPYAEIEV 718 (2196)
T ss_pred cCCeeeeheh
Confidence 9999999873
No 221
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=55.81 E-value=11 Score=29.69 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
-+....|++||.|++||.|+.+...
T Consensus 51 ~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 51 HLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EESEESS-TTSEE-TTCEEEEEBSC
T ss_pred ccccccceecccccCCCEEEecCCC
Confidence 3445558888888888888888743
No 222
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=54.92 E-value=11 Score=35.59 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=36.6
Q ss_pred CCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 115 GDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 115 Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
|+.|++||.+..++=. .++.+--|.+-+-.+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999874 56665544332223678899999999999864
No 223
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=54.68 E-value=16 Score=36.02 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=29.7
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..-+.||..|++ ...++.||.|..|++|+.|-+-
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECC
Confidence 346999999987 5689999999999999999863
No 224
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=53.81 E-value=20 Score=33.14 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.0
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
..|+-| .+|.|..+++++|+.|..|++|+.|-.
T Consensus 89 ~~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 89 VEVRSP------FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEEECC------CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 356777 789999999999999999999998763
No 225
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.67 E-value=24 Score=34.46 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.5
Q ss_pred eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...-+.||..|.+ ...++.||.|..|++|++|-+.
T Consensus 243 ~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 243 ARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 4467899999987 5689999999999999999864
No 226
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=53.61 E-value=12 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
++-+.=+.++++.||.|++||+|++|=+|+.
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~ 402 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANRE 402 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCChH
Confidence 4555557899999999999999999876653
No 227
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=53.33 E-value=11 Score=39.51 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=29.8
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-.+-||..|+|.++++++||.|..|+.|+.+..
T Consensus 602 ~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~A 634 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIA 634 (670)
T ss_pred CceecCCCCeeeeeeccchhhhcccCceEEEEe
Confidence 337899999999999999999999999998864
No 228
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=53.18 E-value=13 Score=38.97 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=10.0
Q ss_pred EeeCCCCEeCCCCEEEEEE
Q 018779 147 LIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~ 165 (350)
++++.||.|..|++|++|-
T Consensus 451 l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 451 LHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred EeccCCCEecCCCeEEEEE
Confidence 4455555555555555554
No 229
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=53.05 E-value=12 Score=31.59 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=28.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCee---ceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT---IDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~---~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
..|+|.++..++ +|.-...|+|+.-. -.||+ | .++.+++||.|..|++|-.
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~---G--peLiV~eG~~V~~dqpLT~ 62 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPA---G--PELIVSEGQSVKADQPLTN 62 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEES---S--S-BS--TT-EETTT-BSB-
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCC---C--CeEEEcCCCEEecCCcccC
Confidence 468888887654 46666677775442 22333 3 2567889999999888753
No 230
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=52.93 E-value=39 Score=26.43 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+|+.+-..+ ...-...|+...-. ..-+.. |..+.+++||.|..|+.|+.+...+
T Consensus 20 ~~G~V~~~~~~~-----~~g~~V~i~~~~g~---~~~y~~-l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 20 ADGKVVFVGEDP-----GYGNYVIIQHGNGY---ITVYGH-LDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SSEEEEEEEEET-----TTEEEEEEEETTSE---EEEEEE-ESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred ccEEEEEEEecc-----CCccEEEEEeCCcC---CEEEec-cccccceecccccCCCEEEecCCCC
Confidence 679998886633 33445556654322 222222 5566799999999999999998543
No 231
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=52.53 E-value=10 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=27.0
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
-++..+-|..-+.+++|||.|+.|++|.+=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 367889999999999999999999999873
No 232
>PRK04350 thymidine phosphorylase; Provisional
Probab=52.00 E-value=14 Score=38.67 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=9.8
Q ss_pred EeeCCCCEeCCCCEEEEEE
Q 018779 147 LIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~ 165 (350)
++++.||.|..|++|++|-
T Consensus 443 l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 443 LHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred EeccCCCEecCCCeEEEEe
Confidence 4455555555555555554
No 233
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=51.34 E-value=14 Score=38.73 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=10.9
Q ss_pred EEeeCCCCEeCCCCEEEEEE
Q 018779 146 NLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~ 165 (350)
.++++.||.|..|++|++|-
T Consensus 451 ~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 451 YLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred EEeccCcCEeCCCCeEEEEE
Confidence 34555555555555555554
No 234
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=51.24 E-value=27 Score=36.56 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=14.0
Q ss_pred EEcCCeeceecCCCCeEEEEEee
Q 018779 127 IETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~i~~ 149 (350)
+..-+-+.+|.|+.+|+|..|..
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~ 429 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDN 429 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeeh
Confidence 33445566677777777766543
No 235
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=51.16 E-value=25 Score=35.49 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=39.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe-------eCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-------AKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~-------~~eG~~v~vG~~la~i~ 165 (350)
+|+-..+.+.|-.. + +...+..--+|-|..+|+|.++. |++||.|..||+|..=.
T Consensus 167 ~GT~l~I~v~E~~~-----p--~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~ 228 (385)
T PF06898_consen 167 KGTRLIIEVVEKVD-----P--EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGV 228 (385)
T ss_pred EeeEEEEEEEEcCC-----C--CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeee
Confidence 57777776665432 2 33345556788899999999875 67888999999987543
No 236
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.38 E-value=35 Score=29.70 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|..|.+.-..+..|+.+-.|+++|-+.+-.
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAvttRk 126 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAVTTRK 126 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEEEecc
Confidence 788999999999999999999999987643
No 237
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=49.10 E-value=31 Score=28.20 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=31.9
Q ss_pred ecCCCeEEEEEc-CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 118 VEMDEPIAQIET-DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 118 V~~gd~l~evet-dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
...+.+|-++.- +++.+.+ ....|.-.+.+|++||.|..||.|+..+.
T Consensus 15 ~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 15 LSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred cccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 444555555542 3333433 23356667889999999999999999753
No 238
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=49.06 E-value=17 Score=36.26 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+++ |++++|+.|.+|++|++||-+
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 4554 899999999999999999954
No 239
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=48.87 E-value=42 Score=35.44 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=41.3
Q ss_pred cCCCCeecCCCeEEEEEcCC-ee-ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 112 KQPGDRVEMDEPIAQIETDK-VT-IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdK-a~-~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+|+||.|..||+|..|.-.- .. +=++.+.+|.+..+.+.+|+. .+.++|+.++.++.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEEecCCC
Confidence 47999999999999875333 21 225666677777877878873 46789999976554
No 240
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=48.72 E-value=40 Score=36.06 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=41.7
Q ss_pred EcCCCCeecCCCeEEEEEcC-Cee--ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 111 LKQPGDRVEMDEPIAQIETD-KVT--IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetd-Ka~--~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+||.|..||.|.+|.-. -.. +=+|.-..|.+..| +.+|+ ..+-++|+.+.+.+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~ 181 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDED 181 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccC
Confidence 57889999999999998754 222 33566679999664 67777 56688999998644
No 241
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=47.93 E-value=29 Score=29.56 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-++|..+..|-+.++ |.=-+.++++||.|..|++|+.++.
T Consensus 64 ~eiLiHiGidTv~l~------g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 64 VEILIHIGIDTVKLN------GEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred cEEEEEeeeeeeecC------CCceEEEecCCCEEcCCCEEEEEcH
Confidence 355666665533332 3334778999999999999999974
No 242
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=46.94 E-value=31 Score=29.23 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=36.2
Q ss_pred CeEEEEEEEcCCCCeec-----CCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 103 TDGTLAKFLKQPGDRVE-----MDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~-----~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-+|+|...+- -|-.+. --+.|..|.-|-+.++ -.| -+.++++||.|..|++|+.++.
T Consensus 42 ~~G~v~~v~~-T~HA~gi~~~~G~evLiHiGidTV~L~----G~g--F~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 42 VDGKIGKIFP-TKHAFGIESDSGVEILIHIGIDTVKLN----GEG--FTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEEeeeceeecC----CCc--eEEEecCCCEEcCCCEEEEEcH
Confidence 3566665543 222221 2356667776644432 234 4778999999999999999974
No 243
>CHL00037 petA cytochrome f
Probab=45.60 E-value=48 Score=32.47 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=32.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEE-EcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQI-ETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~ev-etdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
..|+|.++..++ +|.-...| +|..-..-++.=-.| .++++.+||.|.+|++|-.
T Consensus 210 ~~G~I~~I~~~e-----kGg~~vti~~t~~G~~v~~~iP~G--p~LiVs~G~~v~~~qpLTn 264 (320)
T CHL00037 210 AAGIVSKILRKE-----KGGYEITIVDTSDGRQVVDIIPPG--PELLVSEGESIKLDQPLTN 264 (320)
T ss_pred cCcEEEEEEEcC-----CCcEEEEEEecCCCCEEEEeeCCC--CeEEEecCceEecCCcccC
Confidence 467888876653 45555555 444322211111123 2568999999999999853
No 244
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=45.52 E-value=24 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=19.7
Q ss_pred CeEEEEEE-------EcCCCCeecCCCeEEE
Q 018779 103 TDGTLAKF-------LKQPGDRVEMDEPIAQ 126 (350)
Q Consensus 103 ~eg~I~~w-------~v~~Gd~V~~gd~l~e 126 (350)
.+|.|.+. .|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 35778777 4789999999999984
No 245
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=45.36 E-value=19 Score=34.94 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=40.6
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEcCCeeceecCCCCeEE-EEEeeCCCCEeCCCCEEEEEE
Q 018779 106 TLAKFLKQP----GDRVEMDEPIAQIETDKVTIDVASPQAGVI-QNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 106 ~I~~w~v~~----Gd~V~~gd~l~evetdKa~~ei~ap~~G~l-~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|..|.... |..|++||.+...+=. .++.+--|.+ .+ -...+.+|+.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 556666543 7899999999988875 5555443332 32 134578999999999998754
No 246
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=44.36 E-value=43 Score=35.77 Aligned_cols=55 Identities=31% Similarity=0.453 Sum_probs=41.7
Q ss_pred cCCCCeecCCCeEEEE-EcCCeece--ecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 112 KQPGDRVEMDEPIAQI-ETDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 112 v~~Gd~V~~gd~l~ev-etdKa~~e--i~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+++||.|..||++++| ||.-.... ++.-+.|+|..| +.+|+ ..+-++|+.++..+
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 7899999999999988 55444433 455679998765 67777 56688999998644
No 247
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=43.26 E-value=32 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 142 GVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 142 G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
|.-=+.++++||.|+.|++|..++.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECH
Confidence 5555889999999999999999974
No 248
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.14 E-value=29 Score=33.83 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHHHHHhccccccEEEEEeEEechHHHHHHHHHH
Q 018779 253 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYK 286 (350)
Q Consensus 253 IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk 286 (350)
+.+.+.+.++..|+ ....||.++.+.+..+.+.
T Consensus 183 i~~av~~~r~~~~~-~~kIeVEv~tleea~~a~~ 215 (290)
T PRK06559 183 VQKAIAQARAYAPF-VKMVEVEVESLAAAEEAAA 215 (290)
T ss_pred HHHHHHHHHHhCCC-CCeEEEECCCHHHHHHHHH
Confidence 33444444444554 3457777888887776654
No 249
>PRK04350 thymidine phosphorylase; Provisional
Probab=42.86 E-value=44 Score=35.00 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.3
Q ss_pred EEcCCeeceecCCCCeEEEEEee
Q 018779 127 IETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 127 vetdKa~~ei~ap~~G~l~~i~~ 149 (350)
+..-+-..+|.|+.+|+|..|..
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~ 421 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDN 421 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeeh
Confidence 44556677888888888877654
No 250
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=42.71 E-value=29 Score=34.76 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhh
Q 018779 299 LMSGFVKAAVSALQH 313 (350)
Q Consensus 299 ~~~fliKAva~AL~~ 313 (350)
+++-++|.+...|.+
T Consensus 261 ~~~~l~~~vr~~Ld~ 275 (352)
T PRK07188 261 VNPELIKALRKALDE 275 (352)
T ss_pred ccHHHHHHHHHHHhh
Confidence 578899999999864
No 251
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=41.69 E-value=15 Score=34.63 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=26.0
Q ss_pred EEEEcCCCCeecCCCeEEEEEcCCeece
Q 018779 108 AKFLKQPGDRVEMDEPIAQIETDKVTID 135 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetdKa~~e 135 (350)
..|++-+|+.+++=|+.|.||.||+.++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 3699999999999999999999999877
No 252
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=41.03 E-value=28 Score=40.86 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.4
Q ss_pred EEEcCCCCeecCCCeEEEEEc--------CCeeceecCCCCeEE
Q 018779 109 KFLKQPGDRVEMDEPIAQIET--------DKVTIDVASPQAGVI 144 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evet--------dKa~~ei~ap~~G~l 144 (350)
..+|++||.|++||+|+|+.. +|+...|-+..+|.+
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 458999999999999999984 566678888888874
No 253
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=40.92 E-value=16 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=8.7
Q ss_pred EcCCCCeecCCCeEEEEE
Q 018779 111 LKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~eve 128 (350)
+|++||.|++||.|+++-
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 344455555555554443
No 254
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=40.42 E-value=1.1e+02 Score=27.73 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=43.7
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeec--------CCC-eEEEEEcCCe--e-ceecCCCCeEEEEEeeCCCCEeCCC
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVE--------MDE-PIAQIETDKV--T-IDVASPQAGVIQNLIAKEGETVEPG 158 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~--------~gd-~l~evetdKa--~-~ei~ap~~G~l~~i~~~eG~~v~vG 158 (350)
..+.+| -+|+|.+....+|+... ..+ .++.+||+.- . +.+-+...+.| ...+++|+.+..|
T Consensus 73 Hr~haP------~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i-~~~~~~g~~v~kG 145 (189)
T TIGR00164 73 HVNRAP------AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRI-VCYVKEGEKVSRG 145 (189)
T ss_pred ceEEcc------cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEE-EEecCCCCEEecC
Confidence 345566 57888887777776332 233 2457777642 2 22332223333 2356889999999
Q ss_pred CEEEEEEeCC
Q 018779 159 AKIAVISKSG 168 (350)
Q Consensus 159 ~~la~i~~~~ 168 (350)
+.++.+.-.+
T Consensus 146 eeiG~f~fGS 155 (189)
T TIGR00164 146 QRIGMIRFGS 155 (189)
T ss_pred cEEEEEecCC
Confidence 9999998653
No 255
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=39.31 E-value=31 Score=32.78 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=22.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+.+..|.+++|+.|+.||++++||-.
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G~ 74 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEGP 74 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEEc
Confidence 466778999999999999988888853
No 256
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=37.70 E-value=73 Score=31.55 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 144 IQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 144 l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.+++|++||.|..|+.|+.+...+
T Consensus 269 l~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 269 NDTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CCccccCCcCEECCCCeEEeEcCCC
Confidence 4567899999999999999998654
No 257
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=37.25 E-value=66 Score=36.78 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=49.2
Q ss_pred EEccCCCCCCCeEEEEEEE----cCCCCeecCCCeEEEEE-cCCeece--ecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 93 AVVPFMGESITDGTLAKFL----KQPGDRVEMDEPIAQIE-TDKVTID--VASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 93 i~~P~lG~~m~eg~I~~w~----v~~Gd~V~~gd~l~eve-tdKa~~e--i~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
|..|.|... .+|. +++||.|..||++.+|. |.=..+- +|....|+|..| +.+|+ ..+-++|+.++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 456777764 2554 68899999999999886 3333333 566679999764 77887 45688999998
Q ss_pred eCC
Q 018779 166 KSG 168 (350)
Q Consensus 166 ~~~ 168 (350)
..+
T Consensus 179 ~~~ 181 (1017)
T PRK14698 179 TPS 181 (1017)
T ss_pred cCC
Confidence 643
No 258
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=37.12 E-value=36 Score=30.04 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=26.4
Q ss_pred ecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 118 VEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 118 V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+++|+-|+.++ .+|...-+.+.+|+.|..|+.||.+.+..
T Consensus 76 l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~K 115 (150)
T PF09891_consen 76 LKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRK 115 (150)
T ss_dssp E-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TT
T ss_pred ECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecC
Confidence 56677777776 35777778999999999999999998643
No 259
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=37.02 E-value=57 Score=34.26 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=14.7
Q ss_pred EcCCeeceecCCCCeEEEEEee
Q 018779 128 ETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 128 etdKa~~ei~ap~~G~l~~i~~ 149 (350)
-.-+-..+|.|+.+|+|..|..
T Consensus 409 ~~a~~~~~v~A~~~G~v~~id~ 430 (500)
T TIGR03327 409 QVGDYTYTITAPTDGYVTDIDN 430 (500)
T ss_pred CCCCeEEEEECCCCeEEEEeeh
Confidence 3445567777777777777654
No 260
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=36.56 E-value=27 Score=30.02 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=30.6
Q ss_pred CeEEEEEEEcCCCCee----cC-CCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 103 TDGTLAKFLKQPGDRV----EM-DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V----~~-gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
-+|+|...+-. |-.+ +. =+.|..|--|-+.++ -.| -+.++++||.|..|++|+.++.
T Consensus 46 ~~G~v~~i~~T-~HAi~i~s~~G~eiLiHiGidTv~L~----G~g--F~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 46 VDGTVTMIFPT-KHAIGIRSDNGVEILIHIGIDTVKLN----GEG--FETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp SSEEEEEE-TT-SSEEEEEETTSEEEEEE-SBSGGGGT----TTT--EEESS-TTSEE-TTEEEEEE-H
T ss_pred eeEEEEEEcCC-CCEEEEEeCCCCEEEEEEccchhhcC----Ccc--eEEEEeCCCEEECCCEEEEEcH
Confidence 46777776531 2111 11 133445554433322 235 4788999999999999999984
No 261
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=35.44 E-value=30 Score=26.57 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=31.8
Q ss_pred EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCC----------CCEeCCCCEEE
Q 018779 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKE----------GETVEPGAKIA 162 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~e----------G~~v~vG~~la 162 (350)
|..++||.| .|. +.++..+.+.+++...++|.|..-.+.. .+.+.+|+.|-
T Consensus 2 y~p~~GdiV-~g~-V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~ 62 (86)
T cd05789 2 YIPEVGDVV-IGR-VTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIV 62 (86)
T ss_pred CcCCCCCEE-EEE-EEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEE
Confidence 556677777 232 3345566688888888999886543332 22477887643
No 262
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=34.89 E-value=40 Score=32.86 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=16.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
.+| . .+++|+.|.+|++|++||-.
T Consensus 53 ~~i-~-~~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 53 VKV-Y-ALPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred eEE-E-EeCCCCEECCCCcEEEEEeC
Confidence 455 3 47888888888888877743
No 263
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=34.63 E-value=59 Score=33.64 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.++++.||.|..|++|++|-..+
T Consensus 384 ~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 384 TLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred EEccCCcCEECCCCeEEEEeCCC
Confidence 46789999999999999998544
No 264
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=34.61 E-value=35 Score=35.00 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 141 AGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 141 ~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.|+ .++.+.||.|++|++|+.|-.+++
T Consensus 377 aGi--~l~kk~ge~Vk~Gd~l~tiya~~~ 403 (435)
T COG0213 377 AGI--YLHKKLGEKVKKGDPLATIYAESE 403 (435)
T ss_pred cce--EEEecCCCeeccCCeEEEEecCCc
Confidence 464 467888888888888888876444
No 265
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=33.50 E-value=26 Score=31.92 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEE
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQ 126 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~e 126 (350)
+++.+|.+++||+|+.||.|++
T Consensus 181 ~~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 181 DKIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred CCccccccCCCCEEEeeeEEeC
Confidence 4445999999999999999874
No 266
>PRK02259 aspartoacylase; Provisional
Probab=33.13 E-value=17 Score=35.11 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=36.8
Q ss_pred EcCCC--CeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEE
Q 018779 111 LKQPG--DRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 111 ~v~~G--d~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~ 163 (350)
.++.| +.|++||+|+.. .|--++.++++.+|+. ++++|...+..|..++.
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~~ 282 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMSL 282 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhhh
Confidence 35556 559999999988 6667788888888875 56777777777766554
No 267
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=32.97 E-value=75 Score=32.52 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.++.+.||.|..|++|++|-..+
T Consensus 377 ~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 377 YLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred EEecCCcCEeCCCCeEEEEeCCC
Confidence 45788999999999999997543
No 268
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=32.88 E-value=63 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCeEEEEEeeCC-CCEeCCCCEEEEEEeCCC
Q 018779 140 QAGVIQNLIAKE-GETVEPGAKIAVISKSGE 169 (350)
Q Consensus 140 ~~G~l~~i~~~e-G~~v~vG~~la~i~~~~~ 169 (350)
.-|.|..+.... |+.|..|++|+.|+....
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 367888877666 999999999999996543
No 269
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=32.81 E-value=52 Score=33.20 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE
Q 018779 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~ 145 (350)
.|++||.|++||+|..=+-++-.-.-.-..+|.|.
T Consensus 208 ~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~ 242 (382)
T TIGR02876 208 VVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVF 242 (382)
T ss_pred EEccCCEEcCCCEEEEeEeCCCCceEEEccceEEE
No 270
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=31.98 E-value=70 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.++++.||.|..|++|++|-..++
T Consensus 383 ~l~~k~Gd~V~~Gd~l~~i~~~~~ 406 (437)
T TIGR02643 383 TDLLPLGDRVEKGEPLAVVHAADE 406 (437)
T ss_pred EeccCCcCEeCCCCeEEEEECCCH
Confidence 467899999999999999985443
No 271
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=30.54 E-value=1.5e+02 Score=27.16 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=43.1
Q ss_pred CeEEEEEEEcCCCCeecC---------CCeEEEEEcCC---ee-ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 103 TDGTLAKFLKQPGDRVEM---------DEPIAQIETDK---VT-IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~---------gd~l~evetdK---a~-~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-+|+|.++...+|+.... -..+..+||++ +. +.|-+...+.| ...+++|+.+..|+.++.+.-.+
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I-~~~~~~g~~v~kGe~~G~f~fGS 175 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRI-VCYVKEGDEVERGERFGLIRFGS 175 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEE-EEeCCCCCEEccCcEEeEEecCC
Confidence 579999998888875543 23445777753 22 23333344444 23568899999999999998653
No 272
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=29.63 E-value=39 Score=33.89 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=43.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCee-ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVT-IDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~-~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
++.+..|....+..|++||.+...+=.-.. +-++++. .+ +..+++|+.|..|+.|+.+..
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 345566777777899999999988874332 3345664 23 556899999999999987754
No 273
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=27.96 E-value=80 Score=39.70 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.3
Q ss_pred EEcCCCCeecCCCeEEEEEc
Q 018779 110 FLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~evet 129 (350)
..|++||.|++||+|+.+-.
T Consensus 2616 l~v~~g~~v~~gdilak~p~ 2635 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPK 2635 (2890)
T ss_pred EEecCCCEecccceEeeccc
Confidence 57899999999999997753
No 274
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=27.85 E-value=21 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=10.4
Q ss_pred EEEcCCCCeecCCCeEE
Q 018779 109 KFLKQPGDRVEMDEPIA 125 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ 125 (350)
+..|++||.|+.||+|-
T Consensus 45 eLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 45 ELIVSEGQSVKADQPLT 61 (118)
T ss_dssp -BS--TT-EETTT-BSB
T ss_pred eEEEcCCCEEecCCccc
Confidence 45799999999999983
No 275
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=27.74 E-value=67 Score=25.19 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.3
Q ss_pred eEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 142 GVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 142 G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
|.-.++++++|+.+..|++|+.+..
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 3345789999999999999999975
No 276
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=27.32 E-value=36 Score=35.18 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=26.0
Q ss_pred ecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 136 VASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 136 i~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
..+++.|.-.+.+|++||.|..||+|+.-.
T Consensus 32 pl~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~ 61 (447)
T TIGR01936 32 DGRDFVGMRPKMKVRPGDKVKAGQPLFEDK 61 (447)
T ss_pred echhcCCCCCceEeCcCCEEcCCCEeEecC
Confidence 456777888899999999999999999865
No 277
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=26.71 E-value=97 Score=32.00 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEeeCCCCEeCCCCEEEEEEe
Q 018779 146 NLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~ 166 (350)
.++++.||.|..|++|++|-.
T Consensus 379 ~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 379 VLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred EeccCCcCEeCCCCeEEEEeC
Confidence 467889999999999999983
No 278
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=25.92 E-value=1e+02 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=18.3
Q ss_pred EeeCCCCEeCCCCEEEEEEeCC
Q 018779 147 LIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.+++|+.|.+|++||.|-.+.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~ 2637 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKAT 2637 (2890)
T ss_pred EEecCCCEecccceEeeccccc
Confidence 6788999999999999986544
No 279
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=25.72 E-value=76 Score=37.25 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.7
Q ss_pred EEcCCCCeecCCCeEEEEEc-------CCeeceecCCCCeEE
Q 018779 110 FLKQPGDRVEMDEPIAQIET-------DKVTIDVASPQAGVI 144 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~evet-------dKa~~ei~ap~~G~l 144 (350)
.+|+.|+.|+.+|+|+|+-+ +|+.=.|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 58999999999999999986 356677889999854
No 280
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=25.27 E-value=1.4e+02 Score=21.16 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=30.2
Q ss_pred cccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcce
Q 018779 263 TFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVN 318 (350)
Q Consensus 263 ~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lN 318 (350)
..++|++....++ +++++..+. .. .-|++.-|+.++-.+|++...++
T Consensus 3 ~~~~f~lRlP~~l------~~~lk~~A~-~~--gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 3 KDPQFNLRLPEEL------KEKLKERAE-EN--GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CSEEEEEECEHHH------HHHHHHHHH-HT--TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCceeeECCHHH------HHHHHHHHH-Hh--CCChHHHHHHHHHHHHhccccCC
Confidence 4567777655443 334443322 22 35999999999999999877665
No 281
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=24.85 E-value=2.1e+02 Score=26.36 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=38.5
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCC
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPG 158 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG 158 (350)
..+.+-+.+++.+. .....+|+.++.||.| +||+++ ..|+.|.++.|+.|+..
T Consensus 52 v~viVS~~~~S~~~----~vel~~gE~l~vGDei-~vd~e~----------veITSIE~~~gkRV~~A 104 (201)
T COG1326 52 VRVIVSRHEESFTK----EVELDPGETLKVGDEI-EVDGEE----------VEITSIELGGGKRVKSA 104 (201)
T ss_pred EEEEEecCCcccce----eEecCCCCeEecCCEE-EEcCCE----------EEEEEEeeCCCcccccc
Confidence 45566666665443 4467889999999975 677776 67888999999887754
No 282
>PRK13380 glycine cleavage system protein H; Provisional
Probab=23.48 E-value=93 Score=27.09 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.8
Q ss_pred eecCCCCeEEEEEeeC-CCCEeCCCCEEEEEEeCC
Q 018779 135 DVASPQAGVIQNLIAK-EGETVEPGAKIAVISKSG 168 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~-eG~~v~vG~~la~i~~~~ 168 (350)
++-...-|.|..+.++ +|+.|..|++|+.|+...
T Consensus 37 d~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K 71 (144)
T PRK13380 37 DYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGK 71 (144)
T ss_pred HHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcc
Confidence 3445667889899887 899999999999998543
No 283
>PRK11637 AmiB activator; Provisional
Probab=23.27 E-value=1.4e+02 Score=30.23 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=34.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+|+... .....--++.|+...-.+.+.+. +..+.+.+||.|..|++|+.+...+
T Consensus 346 ~~G~V~~~~-----~~~~~G~~vii~hg~g~~t~Y~~----~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 346 ADGRVLLAD-----WLQGYGLVVVVEHGKGDMSLYGY----NQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred CCeEEEEee-----ccCCcccEEEEEeCCCcEEEccC----CCcCCCCCcCEECCCCeEEeecCCC
Confidence 567776541 12222224455554434444432 4456799999999999999997544
No 284
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=22.67 E-value=50 Score=34.15 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 137 ASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 137 ~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.+...|.-.+.+|++||.|.+||+|+.-.
T Consensus 34 l~qh~G~~~~~~V~~GD~V~~Gq~I~~~~ 62 (448)
T PRK05352 34 GEDYVGLRPKMKVKEGDKVKKGQPLFEDK 62 (448)
T ss_pred chhcCCCCCceEeCcCCEEcCCCEeEecC
Confidence 45667888899999999999999999754
No 285
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.35 E-value=1e+02 Score=23.41 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=33.6
Q ss_pred EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCC------CCEeCCCCEEE
Q 018779 110 FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKE------GETVEPGAKIA 162 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~e------G~~v~vG~~la 162 (350)
|+-++||.|. | .+..+..+.+.+++-+..+|.|....... .+.+.+|+.|-
T Consensus 2 y~p~~GdiV~-G-~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~ 58 (82)
T cd04454 2 YLPDVGDIVI-G-IVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLIL 58 (82)
T ss_pred CCCCCCCEEE-E-EEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEE
Confidence 3446666662 2 34566778888999889999987765533 24467787643
No 286
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=22.11 E-value=1.2e+02 Score=35.65 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.6
Q ss_pred EEcCCCCeecCCCeEEEEEcCC
Q 018779 110 FLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~evetdK 131 (350)
.++..||.|++||.|+.+=-++
T Consensus 952 ~~~~~g~~v~~Gd~L~~l~~er 973 (1331)
T PRK02597 952 LHVRDGDLVQRGDNLALLVFER 973 (1331)
T ss_pred EEecCCCEecCCCeEEEEEeee
Confidence 4778899999999999765443
No 287
>PRK11637 AmiB activator; Provisional
Probab=20.77 E-value=43 Score=34.04 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEcC
Q 018779 108 AKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evetd 130 (350)
....|++||.|.+||+|+.|-+.
T Consensus 379 ~~~~v~~G~~V~~G~~ig~~g~~ 401 (428)
T PRK11637 379 QSALVSVGAQVRAGQPIALVGSS 401 (428)
T ss_pred CcCCCCCcCEECCCCeEEeecCC
Confidence 34569999999999999999765
Done!