Query 018779
Match_columns 350
No_of_seqs 246 out of 1990
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 2.4E-52 8.3E-57 418.9 1.5 259 89-348 1-306 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 4.8E-29 1.6E-33 234.4 12.9 111 238-348 15-125 (256)
3 1scz_A E2, dihydrolipoamide su 99.9 4.9E-28 1.7E-32 224.8 12.4 108 241-348 4-111 (233)
4 3l60_A Branched-chain alpha-ke 99.9 6.9E-27 2.4E-31 219.1 11.9 100 242-347 16-119 (250)
5 3rqc_A Probable lipoamide acyl 99.9 2.9E-27 9.8E-32 218.4 8.7 104 240-348 5-110 (224)
6 1dpb_A Dihydrolipoyl-transacet 99.9 1.2E-26 4.2E-31 216.6 12.3 106 241-347 15-122 (243)
7 2ii3_A Lipoamide acyltransfera 99.9 5.2E-26 1.8E-30 214.5 13.0 106 240-347 30-137 (262)
8 3b8k_A PDCE2;, dihydrolipoylly 99.9 1E-26 3.5E-31 216.6 6.2 107 240-348 11-117 (239)
9 1y8o_B Dihydrolipoyllysine-res 99.8 1.8E-20 6.1E-25 158.8 12.5 86 85-170 22-108 (128)
10 2dne_A Dihydrolipoyllysine-res 99.8 1.1E-20 3.9E-25 155.5 9.7 83 87-169 4-87 (108)
11 3crk_C Dihydrolipoyllysine-res 99.8 3.7E-20 1.3E-24 146.2 11.7 82 88-169 3-85 (87)
12 2dnc_A Pyruvate dehydrogenase 99.8 1.9E-20 6.7E-25 151.4 10.3 83 87-169 4-87 (98)
13 1k8m_A E2 component of branche 99.8 7.8E-20 2.7E-24 146.4 11.4 80 89-168 3-82 (93)
14 1zy8_K Pyruvate dehydrogenase 99.8 8.7E-21 3E-25 175.5 0.0 81 88-168 1-82 (229)
15 1q23_A Chloramphenicol acetylt 99.8 4.4E-19 1.5E-23 163.0 10.4 77 261-347 27-104 (219)
16 1ghj_A E2, E2, the dihydrolipo 99.8 5E-19 1.7E-23 136.8 9.1 76 91-166 2-77 (79)
17 3cla_A Type III chloramphenico 99.8 5.9E-19 2E-23 161.5 9.8 76 262-347 23-99 (213)
18 1pmr_A Dihydrolipoyl succinylt 99.8 5.6E-20 1.9E-24 142.8 0.6 77 90-166 2-78 (80)
19 2l5t_A Lipoamide acyltransfera 99.8 2.8E-18 9.5E-23 131.9 9.4 75 91-165 2-76 (77)
20 2i9d_A Chloramphenicol acetylt 99.8 2.1E-18 7.3E-23 158.3 10.1 76 262-347 25-102 (217)
21 1qjo_A Dihydrolipoamide acetyl 99.7 4.3E-18 1.5E-22 131.6 9.1 78 89-168 1-78 (80)
22 2xt6_A 2-oxoglutarate decarbox 99.7 8.4E-18 2.9E-22 184.9 10.0 91 256-347 1-100 (1113)
23 1iyu_A E2P, dihydrolipoamide a 99.7 6E-17 2.1E-21 125.0 9.6 75 91-168 2-76 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.7 2.3E-17 7.9E-22 127.9 4.8 77 90-167 2-78 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.6 1.5E-16 5.1E-21 124.8 0.1 73 90-168 2-74 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.5 1.5E-13 5.1E-18 103.5 8.7 64 103-166 6-69 (72)
27 2kcc_A Acetyl-COA carboxylase 99.5 7E-14 2.4E-18 109.4 6.1 65 103-168 12-76 (84)
28 2jku_A Propionyl-COA carboxyla 99.4 3.6E-14 1.2E-18 113.5 3.2 77 89-165 14-94 (94)
29 2dn8_A Acetyl-COA carboxylase 99.4 4.9E-13 1.7E-17 107.9 8.4 65 103-168 24-88 (100)
30 2d5d_A Methylmalonyl-COA decar 99.4 1.6E-12 5.4E-17 98.1 8.9 63 103-165 12-74 (74)
31 1dcz_A Transcarboxylase 1.3S s 99.3 1.9E-12 6.4E-17 98.8 7.7 63 103-165 15-77 (77)
32 1bdo_A Acetyl-COA carboxylase; 99.3 2.7E-12 9.3E-17 98.9 8.4 63 103-165 11-80 (80)
33 2ejm_A Methylcrotonoyl-COA car 99.3 2.7E-12 9.1E-17 103.4 8.0 67 103-169 21-87 (99)
34 3n6r_A Propionyl-COA carboxyla 99.2 8.5E-12 2.9E-16 131.6 8.8 63 103-165 619-681 (681)
35 3va7_A KLLA0E08119P; carboxyla 99.2 2.3E-11 8E-16 135.4 9.0 61 104-164 1175-1235(1236)
36 3u9t_A MCC alpha, methylcroton 99.2 2.4E-12 8.3E-17 135.6 0.0 64 104-167 610-673 (675)
37 3hbl_A Pyruvate carboxylase; T 99.2 3.5E-11 1.2E-15 133.3 8.8 64 104-167 1085-1148(1150)
38 2k32_A A; NMR {Campylobacter j 99.0 6.4E-10 2.2E-14 91.3 6.7 67 103-169 8-104 (116)
39 3bg3_A Pyruvate carboxylase, m 98.9 3.2E-10 1.1E-14 119.9 3.4 61 104-164 657-717 (718)
40 2qf7_A Pyruvate carboxylase pr 98.9 1.1E-09 3.7E-14 121.7 5.3 62 104-165 1103-1164(1165)
41 1zko_A Glycine cleavage system 98.8 3.1E-09 1E-13 90.6 5.9 71 92-168 38-116 (136)
42 1hpc_A H protein of the glycin 98.4 8.9E-08 3E-12 81.0 3.4 72 91-168 28-107 (131)
43 1onl_A Glycine cleavage system 98.4 2.5E-07 8.5E-12 77.9 5.8 73 91-168 28-107 (128)
44 3a7l_A H-protein, glycine clea 98.4 2.1E-07 7E-12 78.5 5.2 73 91-168 29-108 (128)
45 2f1m_A Acriflavine resistance 98.2 1.1E-06 3.7E-11 81.8 4.3 67 103-169 29-168 (277)
46 3ne5_B Cation efflux system pr 98.1 4.7E-06 1.6E-10 82.6 7.9 66 103-168 128-242 (413)
47 3lnn_A Membrane fusion protein 98.1 4.1E-06 1.4E-10 80.6 7.1 67 103-169 64-207 (359)
48 3fpp_A Macrolide-specific effl 98.0 4.6E-06 1.6E-10 79.7 6.4 66 103-168 38-191 (341)
49 1vf7_A Multidrug resistance pr 97.8 6.9E-06 2.4E-10 79.9 3.5 66 103-168 50-174 (369)
50 3klr_A Glycine cleavage system 97.8 2.3E-05 7.8E-10 65.6 5.5 77 90-167 18-102 (125)
51 3mxu_A Glycine cleavage system 97.7 4.2E-05 1.4E-09 65.4 5.6 49 105-153 54-103 (143)
52 3tzu_A GCVH, glycine cleavage 97.6 4.6E-05 1.6E-09 64.7 4.8 59 90-149 35-94 (137)
53 4dk0_A Putative MACA; alpha-ha 97.5 7.1E-06 2.4E-10 79.1 -2.3 64 103-166 39-190 (369)
54 3hgb_A Glycine cleavage system 97.4 0.00016 5.6E-09 62.4 5.6 45 105-149 59-104 (155)
55 2dn8_A Acetyl-COA carboxylase 96.9 0.00068 2.3E-08 53.9 3.6 47 121-167 5-51 (100)
56 3cdx_A Succinylglutamatedesucc 96.8 0.0039 1.3E-07 60.4 9.1 62 104-168 275-340 (354)
57 3na6_A Succinylglutamate desuc 96.8 0.0032 1.1E-07 60.5 8.4 59 107-167 267-329 (331)
58 3fmc_A Putative succinylglutam 96.6 0.0053 1.8E-07 60.0 8.4 59 106-166 299-363 (368)
59 1z6h_A Biotin/lipoyl attachmen 96.5 0.0039 1.3E-07 45.7 5.1 34 135-168 1-34 (72)
60 1dcz_A Transcarboxylase 1.3S s 96.4 0.0044 1.5E-07 46.1 5.0 36 133-168 8-43 (77)
61 2d5d_A Methylmalonyl-COA decar 96.3 0.0055 1.9E-07 45.0 5.2 35 134-168 6-40 (74)
62 2k32_A A; NMR {Campylobacter j 96.1 0.0064 2.2E-07 49.0 5.1 34 134-167 2-35 (116)
63 2kcc_A Acetyl-COA carboxylase 95.8 0.0069 2.3E-07 46.4 3.9 36 133-168 5-40 (84)
64 1f3z_A EIIA-GLC, glucose-speci 95.7 0.01 3.5E-07 51.5 4.8 65 92-166 14-117 (161)
65 2gpr_A Glucose-permease IIA co 95.4 0.012 4E-07 50.8 4.0 66 91-166 8-112 (154)
66 2qj8_A MLR6093 protein; struct 95.3 0.042 1.4E-06 52.5 8.2 61 105-167 265-329 (332)
67 2ejm_A Methylcrotonoyl-COA car 95.3 0.018 6.3E-07 45.4 4.6 37 132-168 13-49 (99)
68 2f1m_A Acriflavine resistance 95.1 0.02 6.9E-07 52.6 5.0 54 113-167 3-56 (277)
69 2jku_A Propionyl-COA carboxyla 95.0 0.013 4.5E-07 45.8 3.0 35 133-167 25-59 (94)
70 1ax3_A Iiaglc, glucose permeas 94.9 0.016 5.5E-07 50.3 3.4 60 103-166 19-117 (162)
71 2xha_A NUSG, transcription ant 94.8 0.026 9E-07 50.3 4.7 32 109-146 22-53 (193)
72 1bdo_A Acetyl-COA carboxylase; 94.7 0.026 8.8E-07 42.3 3.8 35 134-168 5-46 (80)
73 3lnn_A Membrane fusion protein 94.6 0.025 8.4E-07 54.0 4.5 57 112-168 35-92 (359)
74 3fpp_A Macrolide-specific effl 94.2 0.048 1.6E-06 51.5 5.3 56 111-167 10-65 (341)
75 2l5t_A Lipoamide acyltransfera 94.1 0.047 1.6E-06 40.6 4.0 27 103-129 51-77 (77)
76 1ghj_A E2, E2, the dihydrolipo 93.9 0.087 3E-06 39.3 5.2 35 90-130 44-78 (79)
77 3crk_C Dihydrolipoyllysine-res 93.8 0.084 2.9E-06 40.4 5.2 36 90-131 48-84 (87)
78 1qjo_A Dihydrolipoamide acetyl 93.5 0.079 2.7E-06 39.5 4.4 35 90-130 43-77 (80)
79 1gjx_A Pyruvate dehydrogenase; 93.1 0.066 2.3E-06 40.1 3.3 33 136-168 10-42 (81)
80 2xhc_A Transcription antitermi 93.0 0.1 3.5E-06 50.7 5.4 48 109-162 62-138 (352)
81 3d4r_A Domain of unknown funct 92.9 0.1 3.5E-06 45.2 4.7 48 103-150 107-155 (169)
82 1iyu_A E2P, dihydrolipoamide a 92.8 0.14 4.7E-06 38.2 4.8 35 90-130 41-75 (79)
83 3ne5_B Cation efflux system pr 92.8 0.097 3.3E-06 51.4 5.0 58 111-168 98-157 (413)
84 1k8m_A E2 component of branche 92.7 0.098 3.3E-06 40.7 4.0 31 138-168 15-45 (93)
85 2dnc_A Pyruvate dehydrogenase 92.4 0.14 4.7E-06 40.3 4.5 37 90-132 50-87 (98)
86 1vf7_A Multidrug resistance pr 92.4 0.082 2.8E-06 50.9 3.8 55 112-167 23-77 (369)
87 1y8o_B Dihydrolipoyllysine-res 92.2 0.18 6.1E-06 41.9 5.1 29 103-131 77-106 (128)
88 2xha_A NUSG, transcription ant 92.1 0.1 3.6E-06 46.4 3.8 46 112-163 85-158 (193)
89 2dne_A Dihydrolipoyllysine-res 92.1 0.12 4.2E-06 41.4 3.9 30 139-168 19-48 (108)
90 2k7v_A Dihydrolipoyllysine-res 91.4 0.12 4.2E-06 39.2 3.1 36 89-130 38-73 (85)
91 4dk0_A Putative MACA; alpha-ha 90.5 0.074 2.5E-06 50.7 1.2 55 112-167 12-66 (369)
92 2auk_A DNA-directed RNA polyme 90.3 0.26 8.9E-06 43.6 4.5 45 109-155 63-107 (190)
93 3n6r_A Propionyl-COA carboxyla 88.6 0.38 1.3E-05 50.5 5.0 36 133-168 612-647 (681)
94 1pmr_A Dihydrolipoyl succinylt 88.5 0.069 2.4E-06 40.1 -0.5 30 138-167 13-42 (80)
95 2xhc_A Transcription antitermi 85.3 0.37 1.3E-05 46.7 2.5 46 112-163 125-198 (352)
96 3hbl_A Pyruvate carboxylase; T 85.1 0.69 2.4E-05 51.4 4.8 35 134-168 1078-1112(1150)
97 3va7_A KLLA0E08119P; carboxyla 85.0 0.73 2.5E-05 51.6 4.9 36 133-168 1167-1202(1236)
98 3lu0_D DNA-directed RNA polyme 84.4 0.92 3.2E-05 50.8 5.3 35 109-145 1002-1036(1407)
99 3bg3_A Pyruvate carboxylase, m 83.9 0.55 1.9E-05 49.6 3.2 35 134-168 650-684 (718)
100 2gpr_A Glucose-permease IIA co 82.1 1.2 4E-05 38.2 4.0 58 104-164 87-153 (154)
101 3dva_I Dihydrolipoyllysine-res 79.7 0.37 1.3E-05 47.9 0.0 30 103-132 52-81 (428)
102 2bco_A Succinylglutamate desuc 79.7 1.5 5.1E-05 42.1 4.3 51 111-168 280-330 (350)
103 3u9t_A MCC alpha, methylcroton 79.7 0.37 1.3E-05 50.5 0.0 35 133-167 602-636 (675)
104 2qf7_A Pyruvate carboxylase pr 78.9 1.2 4.2E-05 49.5 3.9 34 134-167 1096-1129(1165)
105 3our_B EIIA, phosphotransferas 78.3 1.2 4.1E-05 39.2 2.8 28 104-131 114-141 (183)
106 1zy8_K Pyruvate dehydrogenase 75.3 0.58 2E-05 42.6 0.0 31 138-168 14-44 (229)
107 1qpo_A Quinolinate acid phosph 71.7 2.7 9.2E-05 39.4 3.6 24 106-129 71-94 (284)
108 1x1o_A Nicotinate-nucleotide p 70.4 2.6 8.8E-05 39.6 3.2 23 107-129 73-95 (286)
109 3tqv_A Nicotinate-nucleotide p 69.5 2.8 9.4E-05 39.4 3.2 22 108-129 77-98 (287)
110 2b7n_A Probable nicotinate-nuc 69.5 3.2 0.00011 38.4 3.6 22 108-129 60-81 (273)
111 1o4u_A Type II quinolic acid p 69.0 2.4 8.3E-05 39.7 2.7 23 107-129 72-94 (285)
112 1ax3_A Iiaglc, glucose permeas 68.9 5.2 0.00018 34.4 4.6 28 104-131 92-119 (162)
113 3l0g_A Nicotinate-nucleotide p 68.8 3 0.0001 39.4 3.3 22 107-128 85-106 (300)
114 1f3z_A EIIA-GLC, glucose-speci 68.7 2.8 9.7E-05 36.0 2.8 28 104-131 92-119 (161)
115 3gnn_A Nicotinate-nucleotide p 67.5 3.2 0.00011 39.2 3.2 21 108-128 88-108 (298)
116 3paj_A Nicotinate-nucleotide p 66.6 3.4 0.00012 39.4 3.2 22 107-128 109-130 (320)
117 1qap_A Quinolinic acid phospho 66.3 3.5 0.00012 38.8 3.2 23 107-129 86-108 (296)
118 1zko_A Glycine cleavage system 64.8 2.1 7.1E-05 35.8 1.2 33 136-168 39-72 (136)
119 3na6_A Succinylglutamate desuc 63.5 6.2 0.00021 37.4 4.4 35 132-167 256-290 (331)
120 3fmc_A Putative succinylglutam 62.9 5.5 0.00019 38.4 3.9 33 133-166 290-322 (368)
121 2jbm_A Nicotinate-nucleotide p 62.1 3.9 0.00013 38.5 2.6 21 108-128 73-93 (299)
122 3h5q_A PYNP, pyrimidine-nucleo 59.7 4.8 0.00016 40.0 2.9 32 101-132 374-405 (436)
123 1brw_A PYNP, protein (pyrimidi 57.0 6.7 0.00023 38.9 3.4 30 102-131 372-401 (433)
124 2dsj_A Pyrimidine-nucleoside ( 56.7 6.7 0.00023 38.8 3.4 30 102-131 364-393 (423)
125 3cdx_A Succinylglutamatedesucc 55.7 15 0.00053 34.9 5.7 39 128-167 262-300 (354)
126 1uou_A Thymidine phosphorylase 54.6 16 0.00055 36.6 5.8 43 127-169 366-437 (474)
127 1uou_A Thymidine phosphorylase 54.2 8.2 0.00028 38.7 3.6 30 102-131 407-436 (474)
128 1hpc_A H protein of the glycin 54.2 3.6 0.00012 34.1 0.8 33 136-168 30-63 (131)
129 3it5_A Protease LASA; metallop 53.7 5.4 0.00018 34.8 1.9 17 149-165 87-103 (182)
130 1onl_A Glycine cleavage system 50.1 5 0.00017 33.1 1.0 33 136-168 30-63 (128)
131 1brw_A PYNP, protein (pyrimidi 49.5 22 0.00074 35.2 5.7 24 146-169 379-402 (433)
132 2dsj_A Pyrimidine-nucleoside ( 48.2 21 0.00071 35.3 5.3 24 146-169 371-394 (423)
133 2tpt_A Thymidine phosphorylase 48.0 7 0.00024 38.8 1.9 31 101-131 376-406 (440)
134 3c2e_A Nicotinate-nucleotide p 47.9 7.8 0.00027 36.3 2.2 21 108-128 69-95 (294)
135 3a7l_A H-protein, glycine clea 46.7 6.6 0.00023 32.3 1.3 32 137-168 32-64 (128)
136 3tuf_B Stage II sporulation pr 45.1 9.7 0.00033 34.8 2.3 24 106-129 131-154 (245)
137 2hsi_A Putative peptidase M23; 44.9 10 0.00035 35.4 2.4 21 147-167 232-252 (282)
138 1qwy_A Peptidoglycan hydrolase 43.7 11 0.00037 35.4 2.4 22 147-168 239-260 (291)
139 3vr4_A V-type sodium ATPase ca 41.4 47 0.0016 34.2 6.9 54 111-167 130-186 (600)
140 3d4r_A Domain of unknown funct 40.6 27 0.00092 30.1 4.1 41 118-169 96-136 (169)
141 2tpt_A Thymidine phosphorylase 39.3 20 0.00068 35.6 3.6 24 146-169 384-407 (440)
142 3nyy_A Putative glycyl-glycine 38.3 14 0.00049 33.7 2.3 20 148-167 183-202 (252)
143 2lmc_B DNA-directed RNA polyme 38.0 4.3 0.00015 31.1 -1.1 15 111-125 68-82 (84)
144 2gu1_A Zinc peptidase; alpha/b 34.3 18 0.00062 34.5 2.4 22 147-168 284-305 (361)
145 3csq_A Morphogenesis protein 1 32.0 13 0.00043 35.4 0.8 21 109-129 250-270 (334)
146 3our_B EIIA, phosphotransferas 31.8 26 0.00089 30.6 2.7 21 146-166 119-139 (183)
147 1ci3_M Protein (cytochrome F); 31.5 30 0.001 31.4 3.0 50 103-162 176-228 (249)
148 3mfy_A V-type ATP synthase alp 31.2 1.1E+02 0.0036 31.5 7.5 54 111-166 123-179 (588)
149 3h5q_A PYNP, pyrimidine-nucleo 31.1 51 0.0017 32.6 5.0 20 146-165 382-401 (436)
150 2qj8_A MLR6093 protein; struct 30.1 54 0.0019 30.6 4.9 34 133-167 257-290 (332)
151 1hcz_A Cytochrome F; electron 29.6 35 0.0012 30.9 3.2 50 103-162 175-228 (252)
152 1e2w_A Cytochrome F; electron 28.9 41 0.0014 30.5 3.5 52 103-162 175-229 (251)
153 1yw4_A Succinylglutamate desuc 27.6 12 0.00042 35.5 -0.2 35 111-145 278-317 (341)
154 3lu0_D DNA-directed RNA polyme 26.2 24 0.00083 39.7 1.8 19 110-128 1107-1125(1407)
155 2gjh_A Designed protein; oblig 26.0 88 0.003 21.5 4.0 28 299-328 19-46 (62)
156 2jxm_B Cytochrome F; copper, e 25.0 34 0.0012 30.9 2.2 49 103-162 177-228 (249)
157 3it5_A Protease LASA; metallop 24.6 35 0.0012 29.5 2.3 7 103-109 55-61 (182)
158 2kuf_A PKNB, serine/threonine- 23.9 1.5E+02 0.0051 23.6 6.0 27 101-127 41-67 (139)
159 1q90_A Apocytochrome F; membra 23.3 51 0.0017 30.5 3.1 52 103-162 175-229 (292)
160 2i14_A Nicotinate-nucleotide p 21.7 53 0.0018 31.9 3.1 24 104-129 76-99 (395)
161 2kue_A PKNB, serine/threonine- 20.8 1.8E+02 0.006 23.2 5.8 26 102-127 41-68 (138)
162 2hsi_A Putative peptidase M23; 20.7 48 0.0016 30.7 2.5 13 135-147 192-204 (282)
163 1baz_A ARC repressor; transcri 20.4 1.7E+02 0.006 19.7 4.8 24 296-319 30-53 (53)
164 1qwy_A Peptidoglycan hydrolase 20.2 51 0.0017 30.8 2.5 19 109-127 238-256 (291)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=2.4e-52 Score=418.89 Aligned_cols=259 Identities=24% Similarity=0.365 Sum_probs=15.1
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|.+|++|+.|+.++
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred Ccccccc--c--cc---cccC-CCCCC----CCCC--C--C-cCCCCCcccCcccccC-----------CCCCCCCCCCC
Q 018779 169 EGVAQAA--S--AE---KAAA-QPPPA----EEKP--S--A-EKQTPESEAAPAVKDK-----------TPSEPPPTAKK 220 (350)
Q Consensus 169 ~~~~~~~--p--~~---~~~~-~~~~~----~~~~--~--~-~~~~~~~~asP~vr~~-----------~~s~~~~~~~~ 220 (350)
+...... + .. +.+. .+++. ..+. . . ......+.++|++|++ .++|+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence 4321110 0 00 0000 00000 0000 0 0 0111235789999875 35676665433
Q ss_pred CCCC---------CCCCC----CCCCCC----CCCCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHH
Q 018779 221 PTSP---------PSKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 283 (350)
Q Consensus 221 ~~~~---------~~~~~----~~~~~~----~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~ 283 (350)
.+.. .+... ...+.. ......+++||++|||+||++|++||+++||||++.|||||+|+++|+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk 240 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK 240 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence 2210 00000 000000 011235789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeC--CeEEEcCCccEEEEeecCCceeecC
Q 018779 284 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 284 ~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~--~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
++|+.+ ++.|+|+||++||+||+++||++||.||++|++ ++|+++++|||||||+|++||++|.
T Consensus 241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPv 306 (428)
T 3dva_I 241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPV 306 (428)
T ss_dssp -------------------------------------------------------------------
T ss_pred HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEee
Confidence 999764 356999999999999999999999999999998 7899999999999999999999874
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=99.96 E-value=4.8e-29 Score=234.43 Aligned_cols=111 Identities=28% Similarity=0.430 Sum_probs=105.3
Q ss_pred CCCcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcc
Q 018779 238 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVV 317 (350)
Q Consensus 238 ~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~l 317 (350)
...++++||++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+.++.|.|+||++||+||+++||++||+|
T Consensus 15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~ 94 (256)
T 3mae_A 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL 94 (256)
T ss_dssp CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence 34568899999999999999999999999999999999999999999998776667999999999999999999999999
Q ss_pred eeEEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 318 NAVIDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 318 Na~~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
|++|++++|+++++|||||||+|++||++|.
T Consensus 95 Na~~~~~~i~~~~~vnigiAV~t~~GL~vPv 125 (256)
T 3mae_A 95 NSTWAGDKIIEHANINISIAIAAGDLLYVPV 125 (256)
T ss_dssp SEEEETTEEEECSSCCEEECCCCTTSCCCCE
T ss_pred hhEEecCEEEEcCcEEEEeEEEcCCceEEEE
Confidence 9999999999999999999999999999873
No 3
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=99.95 E-value=4.9e-28 Score=224.77 Aligned_cols=108 Identities=55% Similarity=0.873 Sum_probs=102.9
Q ss_pred cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (350)
Q Consensus 241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~ 320 (350)
++++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.++.|.|+||++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 45689999999999999999999999999999999999999999998776667999999999999999999999999999
Q ss_pred EeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 321 IDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 321 ~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
|++++|++++++||||||+|++||++|.
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPv 111 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPV 111 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCE
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEE
Confidence 9999999999999999999999999973
No 4
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=99.94 E-value=6.9e-27 Score=219.06 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=94.9
Q ss_pred ceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEE
Q 018779 242 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI 321 (350)
Q Consensus 242 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~ 321 (350)
++ ||++|||+||++|++||+++||||++.|||+|+|+++|+++|+ .|.|+||++||+||+++||++||+||++|
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~ 89 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTW 89 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEE
Confidence 44 9999999999999999999999999999999999999999873 47899999999999999999999999999
Q ss_pred eC----CeEEEcCCccEEEEeecCCceeec
Q 018779 322 DG----DDIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 322 d~----~~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
++ ++|++++++||||||+|++||++|
T Consensus 90 ~~~~~~~~i~~~~~vnigvAV~t~~GL~vP 119 (250)
T 3l60_A 90 VDSGEGPQVHVHRGVHLGFGAATERGLLVP 119 (250)
T ss_dssp ECTTTSCEEEECSSCCEEECEEETTEEECC
T ss_pred eccCCCCeEEEcCceeEEEEEEcCCCeEEe
Confidence 85 389999999999999999999987
No 5
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=99.94 E-value=2.9e-27 Score=218.37 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=98.2
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
.++++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+ .|.|+||++|++||+++||++||+||+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 457899999999999999999999999999999999999999999984 288999999999999999999999999
Q ss_pred EEeCC--eEEEcCCccEEEEeecCCceeecC
Q 018779 320 VIDGD--DIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 320 ~~d~~--~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
+|+++ +|++++++||||||+|++||++|.
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPv 110 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEE
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeE
Confidence 99987 899999999999999999999884
No 6
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=99.94 E-value=1.2e-26 Score=216.59 Aligned_cols=106 Identities=32% Similarity=0.375 Sum_probs=100.0
Q ss_pred cceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeE
Q 018779 241 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAV 320 (350)
Q Consensus 241 ~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~ 320 (350)
.+++||++|||.||++|++||+++||||++.|+|+|+|+++|+++|+.+. +.|.|+||++|++||+++||++||+||++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 46789999999999999999999999999999999999999999997654 56899999999999999999999999999
Q ss_pred EeCC--eEEEcCCccEEEEeecCCceeec
Q 018779 321 IDGD--DIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 321 ~d~~--~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
|+++ +|+++++|||||||+|++||++|
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vP 122 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVP 122 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEE
Confidence 9964 89999999999999999999987
No 7
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=99.93 E-value=5.2e-26 Score=214.52 Aligned_cols=106 Identities=28% Similarity=0.436 Sum_probs=98.7
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
.++++||++|||+||++|++|+ ++||||++.|||||+|+++|+++|+.. ++.|.|+||++||+||+++||++||+||+
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na 107 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILNA 107 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhh-hhccCCccHHHHHHHHHHHHHHhChHhhE
Confidence 4578999999999999999997 599999999999999999999998743 45689999999999999999999999999
Q ss_pred EEeCC--eEEEcCCccEEEEeecCCceeec
Q 018779 320 VIDGD--DIIYRDYIDISFAVGTKKVCDNS 347 (350)
Q Consensus 320 ~~d~~--~I~~~~~vnIGIAVdT~~GLi~~ 347 (350)
+|+++ +|++++++||||||+|++||++|
T Consensus 108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vP 137 (262)
T 2ii3_A 108 SVDENCQNITYKASHNIGIAMDTEQGLIVP 137 (262)
T ss_dssp EECTTSCEEEECSSCCEEECEEETTEEECC
T ss_pred EEeCCCCEEEEecccceEEEEEcCCCEEEE
Confidence 99864 89999999999999999999987
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=216.58 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=99.8
Q ss_pred CcceeeCchHHHHHHHHHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCccee
Q 018779 240 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 240 ~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa 319 (350)
..+++||++|||+||++|++||+++||||++.|+|+|+|+++|+++|+.+.. +.|+||++|++||+++||++||+||+
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 3567899999999999999999999999999999999999999999976432 36999999999999999999999999
Q ss_pred EEeCCeEEEcCCccEEEEeecCCceeecC
Q 018779 320 VIDGDDIIYRDYIDISFAVGTKKVCDNSF 348 (350)
Q Consensus 320 ~~d~~~I~~~~~vnIGIAVdT~~GLi~~~ 348 (350)
+|++++|+++++|||||||+|++||++|.
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPv 117 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPAGLITPI 117 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSSCEECCE
T ss_pred EEECCEEEEeCceeEEEEEEcCCcEEEEE
Confidence 99999999999999999999999999973
No 9
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.84 E-value=1.8e-20 Score=158.77 Aligned_cols=86 Identities=24% Similarity=0.456 Sum_probs=80.0
Q ss_pred CCCCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEE
Q 018779 85 SDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAV 163 (350)
Q Consensus 85 ~~~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~ 163 (350)
++..+.++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|| .|.+|++|++
T Consensus 22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~ 101 (128)
T 1y8o_B 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 101 (128)
T ss_dssp -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence 445677999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred EEeCCCc
Q 018779 164 ISKSGEG 170 (350)
Q Consensus 164 i~~~~~~ 170 (350)
|...++.
T Consensus 102 i~~~~~~ 108 (128)
T 1y8o_B 102 IVEKEAD 108 (128)
T ss_dssp EESSGGG
T ss_pred EecCccc
Confidence 9875543
No 10
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=155.46 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=78.9
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEE
Q 018779 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVIS 165 (350)
Q Consensus 87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~ 165 (350)
..|.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|.
T Consensus 4 ~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 4 GSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred CccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 4677899999999999999999999999999999999999999999999999999999999999999 899999999998
Q ss_pred eCCC
Q 018779 166 KSGE 169 (350)
Q Consensus 166 ~~~~ 169 (350)
..++
T Consensus 84 ~~~~ 87 (108)
T 2dne_A 84 GKPE 87 (108)
T ss_dssp SCHH
T ss_pred cCcc
Confidence 7543
No 11
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.83 E-value=3.7e-20 Score=146.18 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=77.7
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC-EeCCCCEEEEEEe
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE-TVEPGAKIAVISK 166 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~-~v~vG~~la~i~~ 166 (350)
.+.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8999999999986
Q ss_pred CCC
Q 018779 167 SGE 169 (350)
Q Consensus 167 ~~~ 169 (350)
.++
T Consensus 83 ~~~ 85 (87)
T 3crk_C 83 KEA 85 (87)
T ss_dssp SST
T ss_pred ccC
Confidence 543
No 12
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=151.44 Aligned_cols=83 Identities=24% Similarity=0.563 Sum_probs=78.8
Q ss_pred CCceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEe-CCCCEEEEEE
Q 018779 87 SGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV-EPGAKIAVIS 165 (350)
Q Consensus 87 ~~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v-~vG~~la~i~ 165 (350)
..+.++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| .+|++|+.|.
T Consensus 4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 457789999999999999999999999999999999999999999999999999999999999999998 9999999998
Q ss_pred eCCC
Q 018779 166 KSGE 169 (350)
Q Consensus 166 ~~~~ 169 (350)
..++
T Consensus 84 ~~~~ 87 (98)
T 2dnc_A 84 EEGE 87 (98)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 7554
No 13
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.82 E-value=7.8e-20 Score=146.42 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=76.8
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.++|+||++|++|++|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|..++
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998644
No 14
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.78 E-value=8.7e-21 Score=175.51 Aligned_cols=81 Identities=26% Similarity=0.633 Sum_probs=0.0
Q ss_pred CceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE-eCCCCEEEEEEe
Q 018779 88 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET-VEPGAKIAVISK 166 (350)
Q Consensus 88 ~~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~-v~vG~~la~i~~ 166 (350)
||.++|+||+||++|++|+|++|+|++||.|++||+||+|||||+.++|+||++|+|.++++++||. |.+|++|++|..
T Consensus 1 ~~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 4678999999999999999999999999999999999999999999999999999999999999996 999999999975
Q ss_pred CC
Q 018779 167 SG 168 (350)
Q Consensus 167 ~~ 168 (350)
++
T Consensus 81 ~~ 82 (229)
T 1zy8_K 81 EG 82 (229)
T ss_dssp --
T ss_pred cC
Confidence 44
No 15
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.78 E-value=4.4e-19 Score=163.03 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=72.1
Q ss_pred cccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-e
Q 018779 261 QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-G 339 (350)
Q Consensus 261 ~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAV-d 339 (350)
..++||||++.|||||+|+++|++ .++|+++|++||+++||++||+||++|++++|+++++||||||| +
T Consensus 27 ~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~ 96 (219)
T 1q23_A 27 SVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFH 96 (219)
T ss_dssp TTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEE
T ss_pred CCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEe
Confidence 368999999999999999999964 27899999999999999999999999999999999999999999 9
Q ss_pred cCCceeec
Q 018779 340 TKKVCDNS 347 (350)
Q Consensus 340 T~~GLi~~ 347 (350)
||+||++|
T Consensus 97 t~~GL~~p 104 (219)
T 1q23_A 97 EQTETFSS 104 (219)
T ss_dssp TTTTEEEE
T ss_pred cCCcEEEE
Confidence 99999955
No 16
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.78 E-value=5e-19 Score=136.79 Aligned_cols=76 Identities=41% Similarity=0.675 Sum_probs=74.0
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+.++|.||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999865
No 17
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.77 E-value=5.9e-19 Score=161.52 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=71.8
Q ss_pred ccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCCeEEEcCCccEEEEe-ec
Q 018779 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAV-GT 340 (350)
Q Consensus 262 ~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~~I~~~~~vnIGIAV-dT 340 (350)
.++||+|++.|||||+|+++|++ .++|+++|++||+++||++||++|++|++++|+++++||||||| +|
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 47899999999999999999953 27899999999999999999999999999999999999999999 99
Q ss_pred CCceeec
Q 018779 341 KKVCDNS 347 (350)
Q Consensus 341 ~~GLi~~ 347 (350)
|+||++|
T Consensus 93 ~~GL~vp 99 (213)
T 3cla_A 93 ETETFSA 99 (213)
T ss_dssp TTTEEEE
T ss_pred CCceEEE
Confidence 9999976
No 18
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.76 E-value=5.6e-20 Score=142.76 Aligned_cols=77 Identities=36% Similarity=0.605 Sum_probs=74.1
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.++|+||++|+++.+|+|.+|++++||.|++||+|++||++|+.++|+||++|+|.++++++|+.+..|++|+.|..
T Consensus 2 ~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998864
No 19
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.75 E-value=2.8e-18 Score=131.86 Aligned_cols=75 Identities=32% Similarity=0.588 Sum_probs=73.4
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
++|+||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999986
No 20
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.1e-18 Score=158.32 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred ccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEe-CCeEEEcCCccEEEEe-e
Q 018779 262 NTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID-GDDIIYRDYIDISFAV-G 339 (350)
Q Consensus 262 ~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d-~~~I~~~~~vnIGIAV-d 339 (350)
.++||+|++.|||+|+|+++|++ .++|+++|++||+++||++||++|++|+ +++|++++++|||||| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 57999999999999999999964 2789999999999999999999999999 8899999999999999 9
Q ss_pred cCCceeec
Q 018779 340 TKKVCDNS 347 (350)
Q Consensus 340 T~~GLi~~ 347 (350)
||+||++|
T Consensus 95 t~~GL~~p 102 (217)
T 2i9d_A 95 KENGKFFT 102 (217)
T ss_dssp STTSCEEE
T ss_pred cCCceEeE
Confidence 99999954
No 21
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.74 E-value=4.3e-18 Score=131.62 Aligned_cols=78 Identities=26% Similarity=0.520 Sum_probs=74.3
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
|.++|+||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus 1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 4578999999998 99999999999999999999999999999999999999999999999999999999999998643
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.72 E-value=8.4e-18 Score=184.95 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred HHHhccccccEEEEEeEEechHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHhhCCcceeEEeCC----eEEEcCC
Q 018779 256 RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGD----DIIYRDY 331 (350)
Q Consensus 256 ~m~~S~~~iPh~t~~~evD~t~L~~lR~~lk~~~~~~~gvkls~~~fliKAva~AL~~~P~lNa~~d~~----~I~~~~~ 331 (350)
+|++|+ ++||||++.|||||+|+++|+++|+.+.++.|.|+||++||+||+++||++||.||++|+++ .|+++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 689996 79999999999999999999999987766779999999999999999999999999999854 6999999
Q ss_pred ccEEEEeecC--Cc---eeec
Q 018779 332 IDISFAVGTK--KV---CDNS 347 (350)
Q Consensus 332 vnIGIAVdT~--~G---Li~~ 347 (350)
|||||||+|+ +| |++|
T Consensus 80 vnigiAV~t~~~~G~~gL~vP 100 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVA 100 (1113)
T ss_dssp CCEEEEC-----------CEE
T ss_pred ccEEEEEeccCCCCceeEEee
Confidence 9999999998 66 9998
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.70 E-value=6e-17 Score=125.04 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=71.4
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
++|+||++|++ + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 57999999996 7 999999999999999999999999999999999999999999999999999999999998643
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.67 E-value=2.3e-17 Score=127.88 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=73.3
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.++|+||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4689999999 6899999999999999999999999999999999999999999999999999999999999999754
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.58 E-value=1.5e-16 Score=124.80 Aligned_cols=73 Identities=26% Similarity=0.529 Sum_probs=69.1
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.++|++|.+ |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 2 VKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred CcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 357889988 8999999999999999999999999999999999999999999999999999999999998754
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.47 E-value=1.5e-13 Score=103.46 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=61.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.+|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 4799999999999999999999999999999999999999999999999999999999999864
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.45 E-value=7e-14 Score=109.44 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=62.1
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|...+
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 5799999999999999999999999999999999999999999999 9999999999999998644
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.43 E-value=3.6e-14 Score=113.49 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred ceEEEEccCCCCCC----CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 89 DLVDAVVPFMGESI----TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 89 ~~~~i~~P~lG~~m----~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
...+|.+|..++.. ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+.|..|++|+.|
T Consensus 14 ~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i 93 (94)
T 2jku_A 14 GTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93 (94)
T ss_dssp ----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-----------------------------------
T ss_pred cCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEE
Confidence 34578899988865 58999999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q 018779 165 S 165 (350)
Q Consensus 165 ~ 165 (350)
+
T Consensus 94 e 94 (94)
T 2jku_A 94 E 94 (94)
T ss_dssp -
T ss_pred C
Confidence 4
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=107.90 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=61.9
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.|..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999 9999999999999999997543
No 30
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.38 E-value=1.6e-12 Score=98.10 Aligned_cols=63 Identities=29% Similarity=0.577 Sum_probs=60.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
..|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+.+..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999999999999999873
No 31
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.35 E-value=1.9e-12 Score=98.76 Aligned_cols=63 Identities=25% Similarity=0.504 Sum_probs=60.8
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.+|+|.+|++++||.|++||+|++++++|+..+|.||++|+|.++.+++|+.+..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 579999999999999999999999999999999999999999999999999999999999874
No 32
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.34 E-value=2.7e-12 Score=98.86 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=58.3
Q ss_pred CeEEEEE-------EEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAK-------FLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~-------w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
..|+|.+ |++++||.|++||+|+++|++|+.++|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3466665 69999999999999999999999999999999999999999999999999999874
No 33
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=103.41 Aligned_cols=67 Identities=18% Similarity=0.395 Sum_probs=63.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999986543
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.25 E-value=8.5e-12 Score=131.57 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=60.8
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
-.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 35
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.19 E-value=2.3e-11 Score=135.35 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=59.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
.|+|.+|+|++||.|++||+|++|||||+.++|+||++|+|.+|++++||.|.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4999999999999999999999999999999999999999999999999999999999987
No 36
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.17 E-value=2.4e-12 Score=135.62 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=0.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999999754
No 37
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.16 E-value=3.5e-11 Score=133.30 Aligned_cols=64 Identities=23% Similarity=0.471 Sum_probs=61.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999999754
No 38
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.98 E-value=6.4e-10 Score=91.31 Aligned_cols=67 Identities=19% Similarity=0.406 Sum_probs=61.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-----------------------------eecCCCCeEEEEEeeCCCC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-----------------------------DVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-----------------------------ei~ap~~G~l~~i~~~eG~ 153 (350)
..|+|.+|++++||.|++||+|+++++.++.. .|.||++|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 47999999999999999999999999986654 8999999999999999999
Q ss_pred EeCCC-CEEEEEEeCCC
Q 018779 154 TVEPG-AKIAVISKSGE 169 (350)
Q Consensus 154 ~v~vG-~~la~i~~~~~ 169 (350)
.|..| ++|+.|...+.
T Consensus 88 ~v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 YVSASTTELVRVTNLNP 104 (116)
T ss_dssp EECTTTSCCEEEECSCT
T ss_pred EEcCCCcEEEEEECCCe
Confidence 99999 99999987554
No 39
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.92 E-value=3.2e-10 Score=119.90 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
+|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999876
No 40
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.87 E-value=1.1e-09 Score=121.66 Aligned_cols=62 Identities=19% Similarity=0.434 Sum_probs=53.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~ 165 (350)
.|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 69999999999999999999999999999999999999999999999999999999999875
No 41
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.84 E-value=3.1e-09 Score=90.57 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=60.5
Q ss_pred EEEccCCCCCCCeEEEEEEE-cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEE---eeCCCCEeC---CCC-EEEE
Q 018779 92 DAVVPFMGESITDGTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNL---IAKEGETVE---PGA-KIAV 163 (350)
Q Consensus 92 ~i~~P~lG~~m~eg~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i---~~~eG~~v~---vG~-~la~ 163 (350)
.+.+|.+|+ |+.+. +++||.|++||+||+||++|+..+|.||++|+|.++ +++.|+.|. -|+ .|+.
T Consensus 38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK 111 (136)
T ss_dssp HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence 345677775 33333 499999999999999999999999999999999999 889999998 888 9999
Q ss_pred EEeCC
Q 018779 164 ISKSG 168 (350)
Q Consensus 164 i~~~~ 168 (350)
|...+
T Consensus 112 i~~~~ 116 (136)
T 1zko_A 112 MEISD 116 (136)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 98654
No 42
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.43 E-value=8.9e-08 Score=81.01 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=56.6
Q ss_pred EEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC---Ee---CCCC-EEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TV---EPGA-KIA 162 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~---~v---~vG~-~la 162 (350)
+++.+|.+|+ |+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++ .| +-|+ -|+
T Consensus 28 td~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (131)
T 1hpc_A 28 TDHAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI 101 (131)
T ss_dssp CHHHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred ehhhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence 3445666665 444444 99999999999999999999999999999999999866655 44 3455 788
Q ss_pred EEEeCC
Q 018779 163 VISKSG 168 (350)
Q Consensus 163 ~i~~~~ 168 (350)
.|...+
T Consensus 102 ~i~~~~ 107 (131)
T 1hpc_A 102 KIKPTS 107 (131)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 888654
No 43
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.42 E-value=2.5e-07 Score=77.95 Aligned_cols=73 Identities=26% Similarity=0.283 Sum_probs=56.9
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeC---CCCEe---CCCC-EEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAK---EGETV---EPGA-KIAV 163 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~---eG~~v---~vG~-~la~ 163 (350)
+++..|.+|+ +...++ +++||.|++||+||+||++|+..+|.||.+|+|.+++.. ..+.+ +-|+ -|+.
T Consensus 28 t~~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~ 102 (128)
T 1onl_A 28 TDYAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFR 102 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred ehHHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEE
Confidence 3445677775 333333 599999999999999999999999999999999999765 44445 5676 8888
Q ss_pred EEeCC
Q 018779 164 ISKSG 168 (350)
Q Consensus 164 i~~~~ 168 (350)
|...+
T Consensus 103 i~~~~ 107 (128)
T 1onl_A 103 LKPRD 107 (128)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 88654
No 44
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.42 E-value=2.1e-07 Score=78.46 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=56.8
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC---EeC---CCC-EEEE
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE---TVE---PGA-KIAV 163 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~---~v~---vG~-~la~ 163 (350)
+++.+|.+|+ +...++ +++||.|++||+||+||++|+..+|.||.+|+|.+++...++ .+. -|+ -|+.
T Consensus 29 td~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~ 103 (128)
T 3a7l_A 29 TEHAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK 103 (128)
T ss_dssp CHHHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred ehHHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence 3455677775 333333 599999999999999999999999999999999999875554 344 565 7888
Q ss_pred EEeCC
Q 018779 164 ISKSG 168 (350)
Q Consensus 164 i~~~~ 168 (350)
|...+
T Consensus 104 i~~~~ 108 (128)
T 3a7l_A 104 IKASD 108 (128)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87644
No 45
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.16 E-value=1.1e-06 Score=81.78 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=58.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998741
Q ss_pred --------------------eeceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCCC
Q 018779 132 --------------------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSGE 169 (350)
Q Consensus 132 --------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~~ 169 (350)
....|.||++|+|..+.+.+|+.|..| ++|+.|...+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence 124799999999999999999999999 68999976543
No 46
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.10 E-value=4.7e-06 Score=82.55 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=58.4
Q ss_pred CeEEEEEEEc-CCCCeecCCCeEEEEEcC------------------------------------------------Cee
Q 018779 103 TDGTLAKFLK-QPGDRVEMDEPIAQIETD------------------------------------------------KVT 133 (350)
Q Consensus 103 ~eg~I~~w~v-~~Gd~V~~gd~l~evetd------------------------------------------------Ka~ 133 (350)
..|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 124
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||++|+|.++.+.+|+.|..|++|+.|...+
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~ 242 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 242 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence 57999999999999999999999999999997543
No 47
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.09 E-value=4.1e-06 Score=80.64 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=59.3
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV-------------------------------------------------- 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa-------------------------------------------------- 132 (350)
..|.|.++++++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999997531
Q ss_pred --------------------------eceecCCCCeEEEEEeeCCCCEeCC-CCEEEEEEeCCC
Q 018779 133 --------------------------TIDVASPQAGVIQNLIAKEGETVEP-GAKIAVISKSGE 169 (350)
Q Consensus 133 --------------------------~~ei~ap~~G~l~~i~~~eG~~v~v-G~~la~i~~~~~ 169 (350)
...|.||++|+|..+.+.+|+.|.. |++|+.|...+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence 2469999999999999999999999 999999986543
No 48
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.05 E-value=4.6e-06 Score=79.66 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=57.4
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|.|.+|++++||.|++||+|+++++.-
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 46999999999999999999999999741
Q ss_pred ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCCCE---EEEEEeCC
Q 018779 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISKSG 168 (350)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~~---la~i~~~~ 168 (350)
....|.||++|+|.++.+.+|+.|..|++ |+.|.+.+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence 01459999999999999999999999987 88887544
No 49
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.84 E-value=6.9e-06 Score=79.89 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=57.7
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|+|.++++++||.|++||+|++|++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999998642
Q ss_pred ------eeceecCCCCeEEEEEeeCCCCEeCCC--CEEEEEEeCC
Q 018779 132 ------VTIDVASPQAGVIQNLIAKEGETVEPG--AKIAVISKSG 168 (350)
Q Consensus 132 ------a~~ei~ap~~G~l~~i~~~eG~~v~vG--~~la~i~~~~ 168 (350)
....|.||++|+|.++.+.+|+.|..| ++|+.|...+
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence 125799999999999999999999995 8999997544
No 50
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.80 E-value=2.3e-05 Score=65.64 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=54.0
Q ss_pred eEEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCE------eCCCC-EE
Q 018779 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGET------VEPGA-KI 161 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~------v~vG~-~l 161 (350)
...|-+-+.... .=|.|+.+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-...+. -+-|+ =|
T Consensus 18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl 96 (125)
T 3klr_A 18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWL 96 (125)
T ss_dssp EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCC
T ss_pred EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceE
Confidence 344444443321 1255665544 789999999999999999999999999999999987665543 22343 36
Q ss_pred EEEEeC
Q 018779 162 AVISKS 167 (350)
Q Consensus 162 a~i~~~ 167 (350)
+.|...
T Consensus 97 ~ki~~~ 102 (125)
T 3klr_A 97 IKMTFS 102 (125)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 666643
No 51
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.69 E-value=4.2e-05 Score=65.38 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=41.4
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCC
Q 018779 105 GTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGE 153 (350)
Q Consensus 105 g~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~ 153 (350)
|.|+-+-. ++|+.|++||+++.||+.|+..+|.||.+|+|.++.-...+
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 44554433 88999999999999999999999999999999998766554
No 52
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.62 E-value=4.6e-05 Score=64.70 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=44.0
Q ss_pred eEEEEccCCCCCCCeEEEEEEEc-CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 90 LVDAVVPFMGESITDGTLAKFLK-QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v-~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
...|-+-+.... .=|.|+-+-. ++|++|++||.++.||+.|+..+|.||.+|+|.++.-
T Consensus 35 ~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 35 PVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred EEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 444544443321 1244554433 8899999999999999999999999999999999854
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.49 E-value=7.1e-06 Score=79.12 Aligned_cols=64 Identities=22% Similarity=0.406 Sum_probs=55.1
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---------------------------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK--------------------------------------------------- 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 131 (350)
..|.|.++++++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 46999999999999999999999998742
Q ss_pred ----------------------------------eeceecCCCCeEEEEEeeCCCCEeCCCCE---EEEEEe
Q 018779 132 ----------------------------------VTIDVASPQAGVIQNLIAKEGETVEPGAK---IAVISK 166 (350)
Q Consensus 132 ----------------------------------a~~ei~ap~~G~l~~i~~~eG~~v~vG~~---la~i~~ 166 (350)
....|.||++|+|.++.+.+|+.|..|++ |+.|..
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence 01359999999999999999999999998 666544
No 54
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.42 E-value=0.00016 Score=62.44 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=38.1
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEee
Q 018779 105 GTLAKFL-KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIA 149 (350)
Q Consensus 105 g~I~~w~-v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~ 149 (350)
|.|+-+- .++|+.|++||+++.||+.|+..+|.||.+|.|.++.-
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 4444332 37899999999999999999999999999999988764
No 55
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00068 Score=53.86 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 121 DEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 121 gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
|+.+|.+|..+-...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~ 51 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence 45567888888888999999999999999999999999999999854
No 56
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.79 E-value=0.0039 Score=60.44 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=53.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.| +.+..++.||.|++||+|++|+. .+...+|.||.+|+|... .....|..|+.|+.|....
T Consensus 275 ~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 275 TG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp CE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred CE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence 35 77888999999999999999997 578899999999999754 5788999999999998643
No 57
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.78 E-value=0.0032 Score=60.55 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=50.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+.+.+++.||.|++||+|++|.. .....+|.||++|+|... ...-.|..|+.|+.|...
T Consensus 267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 67779999999999999999997 356789999999999664 445788899999999754
No 58
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.58 E-value=0.0053 Score=59.98 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc------CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET------DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet------dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
=|.+.+++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|..
T Consensus 299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEee
Confidence 355689999999999999999997 55778999999999954 555689999999999875
No 59
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.45 E-value=0.0039 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.0
Q ss_pred eecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 135 DVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 135 ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK 34 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence 4779999999999999999999999999998643
No 60
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.35 E-value=0.0044 Score=46.14 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=32.6
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..+|.||.+|+|.++++++|+.|..|++|+.|+...
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~ 43 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccc
Confidence 467899999999999999999999999999998643
No 61
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.31 E-value=0.0055 Score=45.02 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence 46889999999999999999999999999998643
No 62
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=96.10 E-value=0.0064 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=32.1
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+.|.|+.+|+|.++++++||.|..|++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999875
No 63
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.84 E-value=0.0069 Score=46.44 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=32.5
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..+|.||.+|+|.++++++||.|..|++|+.|+...
T Consensus 5 ~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred CceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 357999999999999999999999999999998543
No 64
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.69 E-value=0.01 Score=51.55 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=55.6
Q ss_pred EEEccCCCCCCCeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEEE--------------------
Q 018779 92 DAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL-------------------- 147 (350)
Q Consensus 92 ~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i-------------------- 147 (350)
.+.-| -+|+|+.+. +..|.+-. |+-++...+| ..+.||++|+|..+
T Consensus 14 ~i~aP------~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH 83 (161)
T 1f3z_A 14 EIIAP------LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH 83 (161)
T ss_dssp EEECS------SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEec------CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEE
Confidence 45666 689999975 78888766 8999988876 57899999999988
Q ss_pred ---------------eeCCCCEeCCCCEEEEEEe
Q 018779 148 ---------------IAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 148 ---------------~~~eG~~v~vG~~la~i~~ 166 (350)
++++||.|..|++|+.++.
T Consensus 84 iGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp CSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred ECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999974
No 65
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.35 E-value=0.012 Score=50.77 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=55.7
Q ss_pred EEEEccCCCCCCCeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEE--------------------
Q 018779 91 VDAVVPFMGESITDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQN-------------------- 146 (350)
Q Consensus 91 ~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~-------------------- 146 (350)
..+.-| -+|+|+.. -++.|.|-. |+-++...++ ..+.||++|+|..
T Consensus 8 ~~i~aP------~~G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 8 LKVLAP------CDGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEEECS------SSEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred CEEEec------CCeEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 456666 67999997 488888776 8999988876 5899999999987
Q ss_pred ---------------EeeCCCCEeCCCCEEEEEEe
Q 018779 147 ---------------LIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 147 ---------------i~~~eG~~v~vG~~la~i~~ 166 (350)
+++++||.|..|++|+.++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999974
No 66
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=95.35 E-value=0.042 Score=52.52 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=49.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEc----CCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 105 GTLAKFLKQPGDRVEMDEPIAQIET----DKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 105 g~I~~w~v~~Gd~V~~gd~l~evet----dKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+-+...+++.||.|++||+|+++-. .....+|.||++|+|.-. ...-.|..|+.|+.|...
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~~ 329 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILARP 329 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEeeE
Confidence 3455678899999999999999964 567788999999998554 466788899999988643
No 67
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.28 E-value=0.018 Score=45.37 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.2
Q ss_pred eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
-...|.|+.+|+|.++++++||.|..|++|+.|+...
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence 3467899999999999999999999999999998643
No 68
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=95.09 E-value=0.02 Score=52.60 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 113 QPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 113 ~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+.|+.-..=..-+.|+.+ -...|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 344444444556677765 467899999999999999999999999999999864
No 69
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.02 E-value=0.013 Score=45.84 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=31.8
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 46789999999999999999999999999999864
No 70
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.86 E-value=0.016 Score=50.33 Aligned_cols=60 Identities=28% Similarity=0.415 Sum_probs=51.7
Q ss_pred CeEEEEEEEcCCCCeecC----CCeEEEEEcCCeeceecCCCCeEEEEE-------------------------------
Q 018779 103 TDGTLAKFLKQPGDRVEM----DEPIAQIETDKVTIDVASPQAGVIQNL------------------------------- 147 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdKa~~ei~ap~~G~l~~i------------------------------- 147 (350)
-+|+|+.+ .+..|.+-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 57999996 778888766 8889877764 47899999999988
Q ss_pred ----eeCCCCEeCCCCEEEEEEe
Q 018779 148 ----IAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 148 ----~~~eG~~v~vG~~la~i~~ 166 (350)
++++||.|..|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8999999999999999974
No 71
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=94.82 E-value=0.026 Score=50.26 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=26.7
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEE
Q 018779 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN 146 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~ 146 (350)
..+|++||.|++||.||+-. .|-+.++|+|.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 56999999999999999865 777778887754
No 72
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=94.71 E-value=0.026 Score=42.35 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.7
Q ss_pred ceecCCCCeEEEEE-------eeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNL-------IAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i-------~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||..|+|.++ ++++||.|..|++|+.|+...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence 46899999999998 899999999999999998644
No 73
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=94.65 E-value=0.025 Score=53.95 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=45.8
Q ss_pred cCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 112 KQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
++.|+.-..-..-..|+.+ .-...|.++.+|+|.++++++||.|..|++|+.|+..+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 3344444444566778875 66789999999999999999999999999999999754
No 74
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=94.16 E-value=0.048 Score=51.52 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=42.7
Q ss_pred EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.++.|+.-..=..-..|+.. -...|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 34455544444455667765 467899999999999999999999999999999864
No 75
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=94.10 E-value=0.047 Score=40.57 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
..|+|.++++++||.|..|++|++|+|
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 589999999999999999999999985
No 76
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.87 E-value=0.087 Score=39.33 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=30.1
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..+|.-| ..|+|.++++++||.|..|++|++|+.+
T Consensus 44 ~~~i~Ap------~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 44 VMEVLAE------ADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEEECS------SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred eEEEEcC------CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 4566666 6899999999999999999999999753
No 77
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=93.85 E-value=0.084 Score=40.37 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=30.5
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (350)
..+|.-| ..|+|.++++++|| .|..|++|++++...
T Consensus 48 ~~~i~Ap------~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 48 TIGFEVQ------EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECC------SCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred cceeecC------cCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 4556655 68999999999999 899999999999653
No 78
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=93.55 E-value=0.079 Score=39.55 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.8
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..+|.-| ..|+|.++++++||.|..|++|++|+..
T Consensus 43 ~~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 43 SMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 4567777 6899999999999999999999999864
No 79
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=93.05 E-value=0.066 Score=40.13 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=29.2
Q ss_pred ecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 136 VASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 136 i~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+-++..|.|.++++++||.|..|++|+.|+...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence 345789999999999999999999999998643
No 80
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=92.99 E-value=0.1 Score=50.65 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=37.2
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEe-----------------------------eCCCCEeCCCC
Q 018779 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLI-----------------------------AKEGETVEPGA 159 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~-----------------------------~~eG~~v~vG~ 159 (350)
..+|++||.|++||.||+-. .|-+.++|+|.+.. +++|+.|.+|+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~ 135 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL 135 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence 67999999999999999965 56666666664322 67788888888
Q ss_pred EEE
Q 018779 160 KIA 162 (350)
Q Consensus 160 ~la 162 (350)
+||
T Consensus 136 vla 138 (352)
T 2xhc_A 136 PLS 138 (352)
T ss_dssp BSB
T ss_pred EEe
Confidence 887
No 81
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=92.93 E-value=0.1 Score=45.23 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=41.1
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCeec-eecCCCCeEEEEEeeC
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVTI-DVASPQAGVIQNLIAK 150 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~~-ei~ap~~G~l~~i~~~ 150 (350)
.||.-+-..+.+||+|.+||.|+-|.|.|-.+ -+.||++|+|.-+.--
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 46777888999999999999999999999875 4899999998765433
No 82
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=92.85 E-value=0.14 Score=38.19 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.9
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
..+|.-| ..|+|.++++++||.|..|++|++|+.+
T Consensus 41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 3566666 5799999999999999999999999853
No 83
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=92.79 E-value=0.097 Score=51.38 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=44.7
Q ss_pred EcCCCCeecCCCeEEEEEcC-CeeceecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779 111 LKQPGDRVEMDEPIAQIETD-KVTIDVASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetd-Ka~~ei~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~ 168 (350)
.++.|+.-..=.....|+.| .-...|.++.+|+|.++++ ++||.|+.|++|+.|+..+
T Consensus 98 ~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~ 157 (413)
T 3ne5_B 98 TVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 157 (413)
T ss_dssp ECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred EEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence 34444444444556667653 4568899999999999998 9999999999999999544
No 84
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=92.72 E-value=0.098 Score=40.75 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred CCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 138 ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+...|+|.++++++||.|..|++|+.|+...
T Consensus 15 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 15 GIREVTVKEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp TSCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred CCCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence 3568999999999999999999999998644
No 85
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.39 E-value=0.14 Score=40.35 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=31.2
Q ss_pred eEEEEccCCCCCCCeEEEEEEEcCCCCee-cCCCeEEEEEcCCe
Q 018779 90 LVDAVVPFMGESITDGTLAKFLKQPGDRV-EMDEPIAQIETDKV 132 (350)
Q Consensus 90 ~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V-~~gd~l~evetdKa 132 (350)
..+|.-| .+|+|.++++++||.| ..|++|++|+.+..
T Consensus 50 ~~~i~Ap------~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~~ 87 (98)
T 2dnc_A 50 VVTLDAS------DDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 87 (98)
T ss_dssp EEEEECS------SCEEEEECSSCTTCCCEESSCEEEEEECTTS
T ss_pred eeEEeCC------CCEEEEEEEeCCCCEEcCCCCEEEEEecCCC
Confidence 4556655 6899999999999998 99999999997643
No 86
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=92.38 E-value=0.082 Score=50.90 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=39.2
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
++.|+.-..-.....|+.. -...|.++.+|+|.++++++||.|..|++|+.|+..
T Consensus 23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 3344433333445566654 356899999999999999999999999999999853
No 87
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=92.19 E-value=0.18 Score=41.95 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=26.6
Q ss_pred CeEEEEEEEcCCCC-eecCCCeEEEEEcCC
Q 018779 103 TDGTLAKFLKQPGD-RVEMDEPIAQIETDK 131 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd-~V~~gd~l~evetdK 131 (350)
.+|+|.++++++|| .|..||+|++|+...
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 58999999999998 899999999999754
No 88
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=92.11 E-value=0.1 Score=46.40 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=37.5
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE--------------------------EE--eeCCCCEeCCCCEEEE
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ--------------------------NL--IAKEGETVEPGAKIAV 163 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~--------------------------~i--~~~eG~~v~vG~~la~ 163 (350)
+++|+.|+.||+|+ - ...|-|..+|+|. .+ ++++||.|..|++|+.
T Consensus 85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 89999999999999 3 3456788888874 13 8899999999998875
No 89
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=92.07 E-value=0.12 Score=41.45 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 139 PQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 139 p~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|+|.++++++||.|..|++|+.|+...
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence 468999999999999999999999998643
No 90
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=91.42 E-value=0.12 Score=39.20 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.7
Q ss_pred ceEEEEccCCCCCCCeEEEEEEEcCCCCeecCCCeEEEEEcC
Q 018779 89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETD 130 (350)
Q Consensus 89 ~~~~i~~P~lG~~m~eg~I~~w~v~~Gd~V~~gd~l~evetd 130 (350)
+..+|.-| ..|+|.++++++||.|..|++|++|+.+
T Consensus 38 ~~~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 45677777 6799999999999999999999999965
No 91
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=90.49 E-value=0.074 Score=50.71 Aligned_cols=55 Identities=27% Similarity=0.336 Sum_probs=43.8
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
++.|+.-..-..-..|+.. -.+.|.++.+|+|.++++++||.|+.|++|+.|+..
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 4444444455556677754 467899999999999999999999999999999864
No 92
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=90.27 E-value=0.26 Score=43.65 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=37.8
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEe
Q 018779 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETV 155 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v 155 (350)
..+|++||.|++||.|||. |..+..|-+.++|+|.=--+-+|.++
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~ 107 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI 107 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence 5699999999999999977 79999999999999866555555443
No 93
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=88.60 E-value=0.38 Score=50.49 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.6
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|.||..|+|.++++++||.|..|++|++|+...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK 647 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence 456999999999999999999999999999998643
No 94
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=88.53 E-value=0.069 Score=40.09 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 138 ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+..+|+|.++++++||.|..|++|+.|+..
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence 357999999999999999999999999754
No 95
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=85.27 E-value=0.37 Score=46.69 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=30.9
Q ss_pred cCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE----------------------------EEeeCCCCEeCCCCEEEE
Q 018779 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ----------------------------NLIAKEGETVEPGAKIAV 163 (350)
Q Consensus 112 v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~----------------------------~i~~~eG~~v~vG~~la~ 163 (350)
+++||.|+.||+|+ - ...|-|..||+|. .+++++||.|..|++|+.
T Consensus 125 v~~g~~v~~G~vla---k---~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~d 198 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 198 (352)
T ss_dssp CCTTCEECTTCBSB---S---SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEccCcEEe---c---CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCccc
Confidence 89999999999988 2 2334455555543 223667777777777764
No 96
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=85.10 E-value=0.69 Score=51.42 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=32.4
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||..|+|.++++++||.|..|++|+.|+...
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 57999999999999999999999999999998643
No 97
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=84.96 E-value=0.73 Score=51.60 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=32.8
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
...|.||..|+|.++++++||.|..|++|++|+...
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence 456999999999999999999999999999998644
No 98
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=84.44 E-value=0.92 Score=50.79 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=28.0
Q ss_pred EEEcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEE
Q 018779 109 KFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQ 145 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~ 145 (350)
..+|++||.|++||.||+. |--+..|-+.++|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 5789999999999999987 5566777777777653
No 99
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=83.90 E-value=0.55 Score=49.61 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=32.3
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
..|.||..|+|.++.+++||.|..|++|+.|+...
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK 684 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence 57999999999999999999999999999998643
No 100
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=82.06 E-value=1.2 Score=38.19 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=37.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCCee---------ceecCCCCeEEEEEeeCCCCEeCCCCEEEEE
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDKVT---------IDVASPQAGVIQNLIAKEGETVEPGAKIAVI 164 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdKa~---------~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i 164 (350)
+|+=-+.+|++||+|++||+|+++.-++.. +-+.- +. ...+....+..+..|+.|..+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn--~~-~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN--NG-GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE--CS-SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC--CC-cceEEEccCceEcCCCEEEEe
Confidence 466677899999999999999999865331 11111 11 112333446677888888765
No 101
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=79.67 E-value=0.37 Score=47.86 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
.+|+|.++++++||.|..||+|+.|+.+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 689999999999999999999999997543
No 102
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=79.66 E-value=1.5 Score=42.14 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=40.4
Q ss_pred EcCCCCeecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 111 LKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
.++.|+.|++||+|+++- | .+|.+|++|++.- .. .-.|..|+.++.|..+.
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~~ 330 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCEV 330 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEEC
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEEc
Confidence 367899999999999994 4 6889999998633 33 67899999888876543
No 103
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=79.66 E-value=0.37 Score=50.51 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=0.0
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.-.|.||..|+|.++++++||.|..|++|++|+..
T Consensus 602 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 636 (675)
T 3u9t_A 602 QGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAM 636 (675)
T ss_dssp -----------------------------------
T ss_pred CCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 35689999999999999999999999999999853
No 104
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=78.87 E-value=1.2 Score=49.46 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=28.4
Q ss_pred ceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 134 IDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 134 ~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..|.||..|+|.++.+++||.|..|++|+.|+..
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEam 1129 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAM 1129 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC-
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcc
Confidence 5799999999999999999999999999999853
No 105
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=78.26 E-value=1.2 Score=39.25 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|+=-+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 3555689999999999999999998654
No 106
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=75.26 E-value=0.58 Score=42.56 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCCCeEEEEEeeCCCCEeCCCCEEEEEEeCC
Q 018779 138 SPQAGVIQNLIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 138 ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+..+|.|.++++++||.|..|++|+.|+...
T Consensus 14 sm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK 44 (229)
T 1zy8_K 14 TMEEGNIVKWLKKEGEAVSAGDALCEIETDK 44 (229)
T ss_dssp -------------------------------
T ss_pred CCCcEEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 3468999999999999999999999998643
No 107
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=71.73 E-value=2.7 Score=39.37 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.-++|++++||.|++||+|++++-
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEE
Confidence 446899999999999999999884
No 108
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=70.35 E-value=2.6 Score=39.55 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (350)
-++|++++||.|++||+|++++-
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEEE
Confidence 36899999999999999988873
No 109
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=69.52 E-value=2.8 Score=39.45 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=18.7
Q ss_pred EEEEcCCCCeecCCCeEEEEEc
Q 018779 108 AKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (350)
++|++++||.|++||+|++++-
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4899999999999988888873
No 110
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=69.51 E-value=3.2 Score=38.44 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=17.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEc
Q 018779 108 AKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~evet 129 (350)
++|.+++|+.|.+||+|++|+-
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 4688888888888888888773
No 111
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=69.03 E-value=2.4 Score=39.73 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (350)
-++|++++||.|++||+|++++-
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEE
Confidence 35789999999999888888873
No 112
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=68.92 E-value=5.2 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|.=.+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 5666788999999999999999998654
No 113
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=68.79 E-value=3 Score=39.41 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~eve 128 (350)
-++|++++||.|++||+|++++
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEE
Confidence 3589999999999988888887
No 114
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=68.74 E-value=2.8 Score=36.04 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=23.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
+|+=-+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 92 KGEGFKRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCCccEEEEeCcCEECCCCEEEEECHHH
Confidence 3445677999999999999999998643
No 115
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=67.45 E-value=3.2 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=15.6
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 018779 108 AKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~eve 128 (350)
++|++++|+.|.+||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 467777777777777777776
No 116
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=66.61 E-value=3.4 Score=39.43 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=16.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~eve 128 (350)
-++|++++|+.|.+||+|++|+
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 3578888888888888777776
No 117
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=66.34 E-value=3.5 Score=38.83 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEc
Q 018779 107 LAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 107 I~~w~v~~Gd~V~~gd~l~evet 129 (350)
-++|++++|+.|.+||+|++|+-
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 46899999999999999999984
No 118
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=64.80 E-value=2.1 Score=35.82 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.3
Q ss_pred ecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 136 i~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~ 168 (350)
+.+|.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K 72 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESVK 72 (136)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 44566676777777 9999999999999998644
No 119
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=63.51 E-value=6.2 Score=37.40 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.9
Q ss_pred eeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 132 VTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 132 a~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
...-|.||.+|++ ...++.||.|+.|++|++|.+.
T Consensus 256 ~~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 256 GDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp SCCCEECSSCEEE-EESSCTTCEECTTCEEEEEECS
T ss_pred CcEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEcC
Confidence 3456799999977 4579999999999999999874
No 120
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=62.85 E-value=5.5 Score=38.45 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=29.2
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
..-+.||.+|++ ...++.||.|..|++|+.|.+
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEc
Confidence 345789999988 578999999999999999986
No 121
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=62.14 E-value=3.9 Score=38.48 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=15.3
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 018779 108 AKFLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 108 ~~w~v~~Gd~V~~gd~l~eve 128 (350)
++|.+++|+.|.+||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 467777777777777777766
No 122
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=59.66 E-value=4.8 Score=40.00 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCeEEEEEEEcCCCCeecCCCeEEEEEcCCe
Q 018779 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDKV 132 (350)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdKa 132 (350)
-++.+.=+.++++.||.|++||+|++|=.++.
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~ 405 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQ 405 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESSS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCChH
Confidence 34445556788888888888888888764443
No 123
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=56.97 E-value=6.7 Score=38.87 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
++-+.=+.+++|.||.|++||+|++|=+++
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 344444678888888888888888887654
No 124
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.67 E-value=6.7 Score=38.78 Aligned_cols=30 Identities=40% Similarity=0.604 Sum_probs=21.3
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
++.+.=+.+++|.||.|++||+|++|=+++
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333444678888888888888888886653
No 125
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=55.72 E-value=15 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.7
Q ss_pred EcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 128 ETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 128 etdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
+..+...-+.|+.+|.+ +..++.|+.|+.|++|+.|.+.
T Consensus 262 ~~~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 262 MVREADAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHFV 300 (354)
T ss_dssp ECCCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEECT
T ss_pred eecCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEECC
Confidence 33445566889999965 6678999999999999999864
No 126
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=54.59 E-value=16 Score=36.58 Aligned_cols=43 Identities=14% Similarity=0.393 Sum_probs=35.0
Q ss_pred EEcCCeeceecCCCCeEE-----------------------------EEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 127 IETDKVTIDVASPQAGVI-----------------------------QNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 127 vetdKa~~ei~ap~~G~l-----------------------------~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+-.-|...+|.|+.+|+| ..++++.||.|..|++|++|-...+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 445667788888888888 4578899999999999999986554
No 127
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=54.19 E-value=8.2 Score=38.71 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=24.6
Q ss_pred CCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 102 ITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 102 m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
++-+.=+.+++|.||.|++||+|++|=+++
T Consensus 407 id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 407 LRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred cCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 333444789999999999999999998764
No 128
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=54.18 E-value=3.6 Score=34.07 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=26.7
Q ss_pred ecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 136 i~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~ 168 (350)
+..+.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K 63 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVK 63 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESS
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecc
Confidence 44566677778877 9999999999999998643
No 129
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=53.73 E-value=5.4 Score=34.76 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=9.6
Q ss_pred eCCCCEeCCCCEEEEEE
Q 018779 149 AKEGETVEPGAKIAVIS 165 (350)
Q Consensus 149 ~~eG~~v~vG~~la~i~ 165 (350)
+++||.|..|++|+.+.
T Consensus 87 V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 87 VSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCTTCEECTTCEEEEEC
T ss_pred cCCCCEEcCCCEEEeec
Confidence 55555555555555554
No 130
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=50.12 E-value=5 Score=33.06 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.3
Q ss_pred ecCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779 136 VASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 136 i~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~ 168 (350)
+-.+.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 30 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 63 (128)
T 1onl_A 30 YAQDALGDVVYVELPEVGRVVEKGEAVAVVESVK 63 (128)
T ss_dssp HHHHHHCSEEEEECBCTTCEECTTCEEEEEEESS
T ss_pred HHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcc
Confidence 33455566767666 9999999999999998644
No 131
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=49.51 E-value=22 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.++.+.||.|..|++|++|-...+
T Consensus 379 ~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp EESCCTTCEECTTCEEEEEEESSS
T ss_pred eEeccCCCEECCCCeEEEEEcCCc
Confidence 567889999999999999986554
No 132
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=48.17 E-value=21 Score=35.27 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.++.+.||.|..|++|++|-...+
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp EESCCTTCEECTTSEEEEEEECSS
T ss_pred eeeccCCCEeCCCCeEEEEEeCCc
Confidence 567889999999999999986554
No 133
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=47.97 E-value=7 Score=38.82 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCeEEEEEEEcCCCCeecCCCeEEEEEcCC
Q 018779 101 SITDGTLAKFLKQPGDRVEMDEPIAQIETDK 131 (350)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~evetdK 131 (350)
-++-+.=+.+++|.||.|++||+|++|=+++
T Consensus 376 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 376 TIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 3444444678899999999999999887764
No 134
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=47.94 E-value=7.8 Score=36.27 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.6
Q ss_pred EEEEcCCCCeecCC------CeEEEEE
Q 018779 108 AKFLKQPGDRVEMD------EPIAQIE 128 (350)
Q Consensus 108 ~~w~v~~Gd~V~~g------d~l~eve 128 (350)
++|.+++|+.|.+| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 46888888888888 6666665
No 135
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=46.75 E-value=6.6 Score=32.31 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEee-CCCCEeCCCCEEEEEEeCC
Q 018779 137 ASPQAGVIQNLIA-KEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 137 ~ap~~G~l~~i~~-~eG~~v~vG~~la~i~~~~ 168 (350)
..+.-|.|..+.+ ++|+.|..|++|+.|+...
T Consensus 32 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K 64 (128)
T 3a7l_A 32 AQELLGDMVFVDLPEVGATVSAGDDCAVAESVK 64 (128)
T ss_dssp HHHHHCSEEEEECCCTTCEECTTCEEEEEEESS
T ss_pred HhccCCceEEEEecCCCCEEeCCCEEEEEEecc
Confidence 3455566777766 9999999999999998644
No 136
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=45.12 E-value=9.7 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=13.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEc
Q 018779 106 TLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 106 ~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
-+.++.|++||.|++||+|+.+-.
T Consensus 131 HL~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 131 SLSEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp EESEESCCTTCEECTTCEEEECBC
T ss_pred cCCccccCCCCEECCCCEEEEeCC
Confidence 344555666666666666665553
No 137
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=44.88 E-value=10 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=13.9
Q ss_pred EeeCCCCEeCCCCEEEEEEeC
Q 018779 147 LIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~~~ 167 (350)
+.+++||.|..|++|+.+...
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCT
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 356677777777777766543
No 138
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=43.73 E-value=11 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=16.8
Q ss_pred EeeCCCCEeCCCCEEEEEEeCC
Q 018779 147 LIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.|++||.|..|++|+.+...+
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 4678888888888888876544
No 139
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=41.41 E-value=47 Score=34.18 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=41.0
Q ss_pred EcCCCCeecCCCeEEEEEcCC-eecee--cCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 111 LKQPGDRVEMDEPIAQIETDK-VTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-a~~ei--~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
.+++||.|..||.+.+|.-.. ....| +....|+|..| .+| ...+-++++.++..
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~~ 186 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIETE 186 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEET
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEecc
Confidence 379999999999999987543 33443 55679999886 555 56888899999754
No 140
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=40.59 E-value=27 Score=30.13 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred ecCCCeEEEEEcCCeeceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 118 VEMDEPIAQIETDKVTIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 118 V~~gd~l~evetdKa~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
+++|+-|+.++ .+|...-+.+.+|+.|-.|+.||.|.+...
T Consensus 96 lkkGt~L~lvp-----------aeG~~V~~i~~~G~rV~kgd~lA~i~T~KG 136 (169)
T 3d4r_A 96 LKAGTKLISVP-----------AEGYKVYPIMDFGFRVLKGYRLATLESKKG 136 (169)
T ss_dssp ECTTCBCEEEE-----------ECSSEEEECCCCSEEECTTCEEEEEECTTC
T ss_pred EcCCCEEEEEE-----------eCceEEEEEcCcCcEeccCCeEEEEEecCc
Confidence 56777778776 457777788999999999999999986443
No 141
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=39.35 E-value=20 Score=35.57 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEeeCCCCEeCCCCEEEEEEeCCC
Q 018779 146 NLIAKEGETVEPGAKIAVISKSGE 169 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~~~~ 169 (350)
.++.+.||.|..|++|++|-...+
T Consensus 384 ~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 384 TDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp ESCCCTTCEEBTTBCSEEEEESSH
T ss_pred eEeccCCCEECCCCeEEEEecCCH
Confidence 467889999999999999987654
No 142
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=38.32 E-value=14 Score=33.73 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.5
Q ss_pred eeCCCCEeCCCCEEEEEEeC
Q 018779 148 IAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 148 ~~~eG~~v~vG~~la~i~~~ 167 (350)
.+++||.|..|++|+.+...
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTCEECTTCEEEECBCC
T ss_pred cCCCCCEECCCCEEEEECCC
Confidence 45666666666666666543
No 143
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=37.96 E-value=4.3 Score=31.14 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.5
Q ss_pred EcCCCCeecCCCeEE
Q 018779 111 LKQPGDRVEMDEPIA 125 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~ 125 (350)
+|++||.|++||.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 699999999999875
No 144
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=34.30 E-value=18 Score=34.52 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=17.6
Q ss_pred EeeCCCCEeCCCCEEEEEEeCC
Q 018779 147 LIAKEGETVEPGAKIAVISKSG 168 (350)
Q Consensus 147 i~~~eG~~v~vG~~la~i~~~~ 168 (350)
+.+++||.|..|++|+.+...+
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~tg 305 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGATG 305 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 4688899999999999887544
No 145
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=32.00 E-value=13 Score=35.36 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=15.9
Q ss_pred EEEcCCCCeecCCCeEEEEEc
Q 018779 109 KFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~evet 129 (350)
++.|++||.|++||+|+.+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 446888888888888887764
No 146
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=31.79 E-value=26 Score=30.64 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEeeCCCCEeCCCCEEEEEEe
Q 018779 146 NLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~~ 166 (350)
+.++++||.|..|++|+.++.
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp EECSCTTCEECTTCEEEEECH
T ss_pred eEEEeCcCEEcCCCEEEEECH
Confidence 568999999999999999974
No 147
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=31.45 E-value=30 Score=31.36 Aligned_cols=50 Identities=28% Similarity=0.496 Sum_probs=34.0
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCee--c-eecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKVT--I-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa~--~-ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..|+|.++..+ ++|.-...|++..-. + .|++ | .++++.+||.|+.|++|-
T Consensus 176 ~~G~I~~I~~~-----ekgg~~vtI~~~~G~~v~~~iP~---G--p~LiV~~G~~v~~~qpLT 228 (249)
T 1ci3_M 176 AAGVITAIAKA-----DDGSAEVKIRTEDGTTIVDKIPA---G--PELIVSEGEEVAAGAALT 228 (249)
T ss_dssp SCEEEEEEEEC-----TTSCEEEEEECTTSCEEEEEECS---S--SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEEEc-----CCCCEEEEEECCCCCEEEEecCC---C--CeEEEecCCEEecCCccc
Confidence 56888888765 357777777765432 2 2332 2 256799999999999874
No 148
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=31.17 E-value=1.1e+02 Score=31.54 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=39.2
Q ss_pred EcCCCCeecCCCeEEEEEcCC-eecee--cCCCCeEEEEEeeCCCCEeCCCCEEEEEEe
Q 018779 111 LKQPGDRVEMDEPIAQIETDK-VTIDV--ASPQAGVIQNLIAKEGETVEPGAKIAVISK 166 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-a~~ei--~ap~~G~l~~i~~~eG~~v~vG~~la~i~~ 166 (350)
.+++||.|..||++.+|.-.. ....| +....|.|..| +.+|+ ..+-++++.++.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i-~~~g~-~~v~~~i~~i~~ 179 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI-AEEGD-YTIEEVIAKVKT 179 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCSEE-ECTTSEEEEEEC
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe-ccCCc-ccccceEEEEec
Confidence 478999999999999986432 33333 66679988774 45554 577888888874
No 149
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=31.07 E-value=51 Score=32.59 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.1
Q ss_pred EEeeCCCCEeCCCCEEEEEE
Q 018779 146 NLIAKEGETVEPGAKIAVIS 165 (350)
Q Consensus 146 ~i~~~eG~~v~vG~~la~i~ 165 (350)
.++++.||.|..|++|++|-
T Consensus 382 ~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 382 VLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred EEecCCcCEeCCCCeEEEEe
Confidence 45778999999999999998
No 150
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=30.06 E-value=54 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.9
Q ss_pred eceecCCCCeEEEEEeeCCCCEeCCCCEEEEEEeC
Q 018779 133 TIDVASPQAGVIQNLIAKEGETVEPGAKIAVISKS 167 (350)
Q Consensus 133 ~~ei~ap~~G~l~~i~~~eG~~v~vG~~la~i~~~ 167 (350)
..-+.|+..|.+. ..++.|+.|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECC
Confidence 4457899999875 678899999999999999763
No 151
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=29.60 E-value=35 Score=30.90 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=34.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCC---eec-eecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDK---VTI-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---a~~-ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..|+|.++..+ ++|.-...|++.. ..+ .|++ | .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~-----ekgg~~vtI~~~~~G~~v~~~iP~---G--peLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 175 AGGIISKILRK-----EKGGYEITIVDASNERQVIDIIPR---G--LELLVSEGESIKLDQPLT 228 (252)
T ss_dssp SCEEEEEEEEC-----TTSCEEEEEEETTTTEEEEEEECT---T--CCBCCCTTCEECTTCBSB
T ss_pred CCcEEEEEEEc-----CCCCEEEEEecCCCCCEEEEecCC---C--CeEEEecCCEEecCCccc
Confidence 56888888765 3577777777654 222 3443 2 256899999999999874
No 152
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=28.90 E-value=41 Score=30.45 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=33.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--ec-eecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--TI-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--~~-ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..|+|.++..-+. ++|.-...|++..- .+ .|++ | .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~---G--p~LiV~~G~~v~~~qpLT 229 (251)
T 1e2w_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPA---G--PDLIVKEGQTVQADQPLT 229 (251)
T ss_dssp SCEEEEEEEESSS---SSCCEEEEEECTTSCEEEEEECS---S--SCBCCCTTCEECTTCBCB
T ss_pred CCeEEEEEeeccc---CCCCEEEEEEcCCCCEEEEecCC---C--CeEEEecCCEEecCCccc
Confidence 5688888766211 25666777776542 22 2333 2 256799999999999874
No 153
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=27.59 E-value=12 Score=35.52 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=23.0
Q ss_pred EcCCCCeecCCCeEEEEEcCC-----eeceecCCCCeEEE
Q 018779 111 LKQPGDRVEMDEPIAQIETDK-----VTIDVASPQAGVIQ 145 (350)
Q Consensus 111 ~v~~Gd~V~~gd~l~evetdK-----a~~ei~ap~~G~l~ 145 (350)
.++.|+.|++||+|+++-... ...+|.+|.+|+|.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 458899999999999875432 34468889999763
No 154
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=26.20 E-value=24 Score=39.71 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.3
Q ss_pred EEcCCCCeecCCCeEEEEE
Q 018779 110 FLKQPGDRVEMDEPIAQIE 128 (350)
Q Consensus 110 w~v~~Gd~V~~gd~l~eve 128 (350)
..|++||.|+.||+|+.+=
T Consensus 1107 ~~v~~g~~v~~g~vlakip 1125 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIP 1125 (1407)
T ss_dssp CCCCSSCEECTTCEEECCC
T ss_pred EEecCCCEeccCceEEecc
Confidence 3689999999999999764
No 155
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=26.00 E-value=88 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhCCcceeEEeCCeEEE
Q 018779 299 LMSGFVKAAVSALQHQPVVNAVIDGDDIIY 328 (350)
Q Consensus 299 ~~~fliKAva~AL~~~P~lNa~~d~~~I~~ 328 (350)
|..+++|..+ -.-|-.+|..||+|.+..
T Consensus 19 faailikvfa--elgyndinvtwdgdtvtv 46 (62)
T 2gjh_A 19 FAAILIKVFA--ELGYNDINVTWDGDTVTV 46 (62)
T ss_dssp HHHHHHHHHH--HTTCCSCEEEECSSCEEE
T ss_pred HHHHHHHHHH--HhCcccceeEEcCCEEEE
Confidence 6677777554 356899999999987654
No 156
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=24.98 E-value=34 Score=30.94 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=31.6
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--ec-eecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--TI-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--~~-ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..|+|.++..++ |.-...|++..- .+ .|++ | .++++.+||.|+.|++|-
T Consensus 177 ~~G~i~~I~~~e------gg~~vtI~~~~G~~v~~~iP~---G--p~LiV~~G~~v~~~qpLT 228 (249)
T 2jxm_B 177 IAGTIAAIEDNG------FGFDVTIQPEDGDAVVTSILP---G--PELIVAVGDTVEAGQLLT 228 (249)
T ss_dssp SCEEEEEECCSS------SEEEEEEECTTSCCEEEEECS---S--SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEEeCC------CcEEEEEECCCCCEEEEecCC---C--CeEEEecCCEEecCCccc
Confidence 568888877654 445566665432 22 2333 2 256799999999999874
No 157
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=24.58 E-value=35 Score=29.46 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.6
Q ss_pred CeEEEEE
Q 018779 103 TDGTLAK 109 (350)
Q Consensus 103 ~eg~I~~ 109 (350)
.+|+|+.
T Consensus 55 ~~G~V~~ 61 (182)
T 3it5_A 55 HAGTVRV 61 (182)
T ss_dssp SSEEEEE
T ss_pred cCEEEEE
Confidence 4555554
No 158
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=23.90 E-value=1.5e+02 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=19.2
Q ss_pred CCCeEEEEEEEcCCCCeecCCCeEEEE
Q 018779 101 SITDGTLAKFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 101 ~m~eg~I~~w~v~~Gd~V~~gd~l~ev 127 (350)
...+|+|++..-+.|..|.+|..|--+
T Consensus 41 ~~~~g~Vi~q~P~~G~~v~~g~~V~l~ 67 (139)
T 2kuf_A 41 PRPAGEVTGTNPPAGTTVPVDSVIELQ 67 (139)
T ss_dssp SSCTTEEEEESSCTTEEEETTSEEEEE
T ss_pred CCCCCEEEEEcCCCCCCccCCCEEEEE
Confidence 445678888878888888887766533
No 159
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=23.28 E-value=51 Score=30.46 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=33.5
Q ss_pred CeEEEEEEEcCCCCeecCCCeEEEEEcCCe--ec-eecCCCCeEEEEEeeCCCCEeCCCCEEE
Q 018779 103 TDGTLAKFLKQPGDRVEMDEPIAQIETDKV--TI-DVASPQAGVIQNLIAKEGETVEPGAKIA 162 (350)
Q Consensus 103 ~eg~I~~w~v~~Gd~V~~gd~l~evetdKa--~~-ei~ap~~G~l~~i~~~eG~~v~vG~~la 162 (350)
..|+|.++..-+. ++|.-...|++..- .+ .|++ | .++++.+||.|+.|++|-
T Consensus 175 ~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~---G--peLiV~eG~~v~~~qpLT 229 (292)
T 1q90_A 175 AAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPA---G--PDLIVKEGQTVQADQPLT 229 (292)
T ss_dssp SSEEEEEEEECCT---TTCCEEEEEECSSSCEEEEEECS---S--SCBCCCTTCEECTTCBSB
T ss_pred CCeEEEEEeeccc---CCCceEEEEEcCCCCEEEEecCC---C--CeEEEecCCEEecCCccc
Confidence 5688888876211 25666777776542 22 2333 2 256799999999999874
No 160
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=21.67 E-value=53 Score=31.88 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEc
Q 018779 104 DGTLAKFLKQPGDRVEMDEPIAQIET 129 (350)
Q Consensus 104 eg~I~~w~v~~Gd~V~~gd~l~evet 129 (350)
.++| |.+++|+.|.+||+|++||-
T Consensus 76 ~~~i--~~~~eG~~v~~ge~ll~v~G 99 (395)
T 2i14_A 76 PVNV--YAMPEGTIFHPYEPVLQIEG 99 (395)
T ss_dssp SEEE--EECCTTCEECTTSCSEEEEE
T ss_pred CcEE--EEEcCCCEecCCCEEEEEEe
Confidence 4566 58999999999999999985
No 161
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=20.76 E-value=1.8e+02 Score=23.21 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=20.0
Q ss_pred CCe--EEEEEEEcCCCCeecCCCeEEEE
Q 018779 102 ITD--GTLAKFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 102 m~e--g~I~~w~v~~Gd~V~~gd~l~ev 127 (350)
..+ |+|++..-+.|..|.+|+.|..+
T Consensus 41 ~~~~~g~Vi~q~P~~G~~v~~g~~V~l~ 68 (138)
T 2kue_A 41 TPELVGKVIGTNPPANQTSAITNVVIII 68 (138)
T ss_dssp CGGGTTSEEEESSCSSSEEETTSCEEEE
T ss_pred CCccCCEEEEecCCCCCCcCCCCEEEEE
Confidence 346 88888888888888888877644
No 162
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=20.68 E-value=48 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=7.2
Q ss_pred eecCCCCeEEEEE
Q 018779 135 DVASPQAGVIQNL 147 (350)
Q Consensus 135 ei~ap~~G~l~~i 147 (350)
+|.|+.+|+|...
T Consensus 192 pV~A~~~G~V~~~ 204 (282)
T 2hsi_A 192 PIKAPAAGKVILI 204 (282)
T ss_dssp EEECSSCEEEEEE
T ss_pred eEEeccCeEEEEE
Confidence 4556666665443
No 163
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.39 E-value=1.7e+02 Score=19.70 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHHhhCCccee
Q 018779 296 KLGLMSGFVKAAVSALQHQPVVNA 319 (350)
Q Consensus 296 kls~~~fliKAva~AL~~~P~lNa 319 (350)
..|++.++..++..+|.+--.+|+
T Consensus 30 grS~N~~i~~~L~~~l~~~~r~~~ 53 (53)
T 1baz_A 30 GRSVNSEIYQRVMESFKKEGRIGA 53 (53)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHHHhhccccCC
Confidence 579999999999999987666653
No 164
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=20.21 E-value=51 Score=30.83 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=9.9
Q ss_pred EEEcCCCCeecCCCeEEEE
Q 018779 109 KFLKQPGDRVEMDEPIAQI 127 (350)
Q Consensus 109 ~w~v~~Gd~V~~gd~l~ev 127 (350)
++.|++||.|++||+|+.+
T Consensus 238 ~i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 238 RLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp EECCCTTCEECTTCEEEEC
T ss_pred ccccCCcCEECCCCEEEEE
Confidence 4445555555555555544
Done!